BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0303 (rbsA) DE:ribose ABC transporter, ATP-binding protein
(rbsA)
(498 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75161 ribose abc transporter, ATP-binding protein (rbsa) P... 965 0.0
pir||D71179 probable sugar ABC transporter - Pyrococcus horikosh... 820 0.0
gi|11498492 ribose ABC transporter, ATP-binding protein (rbsA-1)... 460 e-128
pir||G72418 sugar ABC transporter, ATP-binding protein - Thermot... 459 e-128
emb|CAC14305.1| (AJ276209) putative ATP-binding protein of an AB... 436 e-121
pir||E72493 probable ribose ABC transport system ATP-binding pro... 432 e-120
gb|AAG19337.1| (AE005028) ribose ABC transporter ATP-binding; Rb... 429 e-119
pir||D70009 probable ABC transporter yufO - Bacillus subtilis >g... 405 e-112
pir||D75454 sugar ABC transporter, ATP-binding protein - Deinoco... 385 e-106
pir||D71338 probable ribose/galactose ABC transporter rbsA-2 - s... 349 4e-95
pir||D70184 probable ribose/galactose ABC transporter mglA - Lym... 343 2e-93
dbj|BAB07449.1| (AP001519) ribose ABC transporter (ATP-binding p... 342 7e-93
pir||B83629 probable ATP-binding component of ABC transporter PA... 339 3e-92
sp|P36947|RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >... 326 3e-88
pir||C82944 methylgalactoside permease ATP-binding protein UU015... 323 4e-87
emb|CAB43719.1| (AJ132423) P59 [Mycoplasma agalactiae] 321 1e-86
dbj|BAB06041.1| (AP001515) sugar ABC transporter (ATP-binding pr... 316 4e-85
pir||B72417 sugar ABC transporter, ATP-binding protein - Thermot... 314 2e-84
sp|P75516|MGLA_MYCPN GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN M... 311 1e-83
sp|P44884|MGLA_HAEIN GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN M... 311 1e-83
emb|CAB66285.1| (AL136519) ABC transporter protein, ATP binding ... 310 2e-83
pir||E72314 ribose ABC transporter, ATP-binding protein - Thermo... 307 2e-82
sp|P23199|MGLA_ECOLI GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN M... 301 1e-80
pir||B37277 50K membrane-associated protein mglA - Escherichia c... 299 4e-80
pir||E82214 galactoside ABC transporter, ATP-binding protein VC1... 297 2e-79
sp|P44735|RBSA_HAEIN RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >... 297 2e-79
pir||A82497 ribose ABC transporter, ATP-binding protein VCA0128 ... 296 3e-79
sp|P04983|RBSA_ECOLI RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >... 295 6e-79
gb|AAA62102.1| (L10328) high affinity ribose transport protein [... 295 6e-79
sp|P23924|MGLA_SALTY GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN M... 295 8e-79
sp|P47365|MGLA_MYCGE GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN M... 294 1e-78
gb|AAD05298.1| (AF082511) putative ATP-binding protein MglA [Tre... 292 5e-78
sp|P32721|ALSA_ECOLI D-ALLOSE TRANSPORT ATP-BINDING PROTEIN ALSA... 287 2e-76
sp|P37388|XYLG_ECOLI D-XYLOSE TRANSPORT ATP-BINDING PROTEIN XYLG... 286 5e-76
gb|AAC43181.1| (U00006) matches PS00017: ATP/GTP-binding site mo... 284 1e-75
gb|AAD45713.1|AF160811_1 (AF160811) L-arabinose transport, ATP b... 284 2e-75
gb|AAB51510.1| (U91632) sugar transporter [Agrobacterium tumefac... 281 1e-74
dbj|BAB07160.1| (AP001518) L-arabinose ABC transporter (ATP-bind... 275 6e-73
gb|AAC44749.1| (U45323) MglA [Treponema pallidum] 272 5e-72
sp|Q56342|MGLA_TREPA GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN M... 272 7e-72
sp|P45046|XYLG_HAEIN D-XYLOSE TRANSPORT ATP-BINDING PROTEIN XYLG... 272 9e-72
sp|P77509|YPHE_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 269 4e-71
pir||G83402 ribose transport protein RbsA PA1947 [imported] - Ps... 268 1e-70
pir||I40465 ATP binding protein - Bacillus subtilis >gi|397497|e... 265 9e-70
sp|P77257|EGO_ECOLI PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN... 265 9e-70
pir||T34924 ABC transporter ATP binding protein - Streptomyces c... 263 3e-69
gb|AAC04781.1| (AF036920) sugar transport ATP-binding protein ho... 263 3e-69
emb|CAB62737.1| (AL133423) putative sugar-transport ATP binding ... 256 3e-67
pir||B72759 probable ABC transporter ATP-binding protein APE0063... 250 2e-65
gi|10954721 hypothetical ABC-transporter gene~similar to teuA ge... 250 3e-65
sp|P08531|ARAG_ECOLI L-ARABINOSE TRANSPORT ATP-BINDING PROTEIN A... 247 3e-64
emb|CAB66211.1| (AL136502) putative ABC transporter, ATP-binding... 246 5e-64
emb|CAB42544.1| (AJ238879) putative ABC-transporter, ATP-binding... 223 3e-57
gb|AAC45344.1| (AF100324) putative ATPase [Mycoplasma fermentans] 222 9e-57
sp|P39326|YTFR_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 209 7e-53
gb|AAD37310.1|AF135170_1 (AF135170) ribose ABC transporter [Yers... 192 7e-48
sp|P55570|Y4MK_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 185 7e-46
dbj|BAA15193.1| (D90793) Ribose transport ATP-binding protein Rb... 179 5e-44
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 162 1e-38
pir||D69159 methyl coenzyme M reductase system, component A2 hom... 155 1e-36
pir||D64507 methyl coenzyme M reductase system, component A2 hom... 149 6e-35
gb|AAB99680.1| (U67606) methyl coenzyme M reductase system, comp... 149 6e-35
pir||A70338 ABC transporter - Aquifex aeolicus >gi|2983088|gb|AA... 140 3e-32
pir||E71957 ABC transporter, ATP-binding protein - Helicobacter ... 140 3e-32
pir||B64551 oligopeptide ABC transporter, ATP-binding protein - ... 136 4e-31
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 136 6e-31
pir||H72356 amino acid ABC transporter, ATP-binding protein - Th... 134 2e-30
gb|AAG37225.1|AF298223_3 (AF298223) glutamine ABC transporter, A... 134 2e-30
pir||D83419 probable ATP-binding component of ABC transporter PA... 133 4e-30
pir||G83351 probable ATP-binding component of ABC transporter PA... 132 8e-30
pir||T03558 ribose transport ATP-binding protein - Rhodobacter c... 131 2e-29
dbj|BAB07378.1| (AP001519) teichoic acid ABC transporter (ATP-bi... 131 2e-29
gb|AAG28500.1|AF196574_3 (AF196574) FrcA [Sinorhizobium meliloti] 130 3e-29
gb|AAC72253.1| (U91581) LctF [Lactococcus lactis subsp. lactis] 130 3e-29
gi|11499064 ABC transporter, ATP-binding protein [Archaeoglobus ... 130 4e-29
sp|P54537|YQIZ_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 129 5e-29
pir||D70020 ABC transporter (ATP-binding protein) homolog yusC -... 129 5e-29
pir||C75369 amino acid ABC transporter, ATP-binding protein - De... 129 5e-29
pir||D69627 cell-division ATP-binding protein ftsE - Bacillus su... 129 7e-29
pir||G64435 cobalt transport ATP-binding protein O homolog - Met... 129 7e-29
sp|Q52815|AAPP_RHILV GENERAL L-AMINO ACID TRANSPORT ATP-BINDING ... 128 1e-28
emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding ... 128 1e-28
dbj|BAB07200.1| (AP001518) ABC transporter (ATP-binding protein)... 128 1e-28
pir||C72303 ABC transporter, ATP-binding protein - Thermotoga ma... 128 2e-28
gb|AAF99566.1| (AF167161) unknown [Staphylococcus aureus] 128 2e-28
pir||C82442 probable peptide ABC transporter, ATP-binding protei... 128 2e-28
pir||B83389 probable ATP-binding component of ABC transporter PA... 127 2e-28
gi|11498429 branched-chain amino acid ABC transporter, ATP-bindi... 127 3e-28
gi|11498623 ABC transporter, ATP-binding protein [Archaeoglobus ... 127 3e-28
gb|AAK41395.1| ABC transporter, ATP binding protein [Sulfolobus ... 127 4e-28
gi|11498288 glutamine ABC transporter, ATP-binding protein (glnQ... 126 6e-28
dbj|BAA77876.1| (D83536) ATP-binding protein ABC. [Escherichia c... 126 6e-28
sp|P30750|ABC_ECOLI ATP-BINDING PROTEIN ABC >gi|7445928|pir||G64... 126 6e-28
pir||T35675 probable ABC-transport system ATP binding protein - ... 125 8e-28
gb|AAD41366.1|AF151698_3 (AF151698) GlnP/GlnQ homolog [Agrobacte... 125 8e-28
pir||E81936 probable amino acid permease ATP-binding protein NMA... 123 3e-27
pir||G81168 amino acid ABC transporter, ATP-binding protein NMB0... 123 4e-27
gi|11498736 ABC transporter, ATP-binding protein [Archaeoglobus ... 123 4e-27
pir||A75184 ATP-binding transport protein PAB0434 - Pyrococcus a... 122 7e-27
gb|AAD11984.1| (AF085687) rhamnose transporter [Rhizobium legumi... 122 7e-27
emb|CAB60178.1| (AL132824) probable ABC sugar transport ATP bind... 122 7e-27
pir||G69043 cobalt transport ATP-binding protein O - Methanobact... 122 1e-26
pir||E70337 ABC transporter - Aquifex aeolicus >gi|2983089|gb|AA... 122 1e-26
pir||C71197 probable ATP-binding transport protein - Pyrococcus ... 122 1e-26
dbj|BAB05182.1| (AP001512) ABC transporter (ATP-binding protein)... 122 1e-26
emb|CAB88958.1| (AL353864) probable ABC transport protein, ATP-b... 122 1e-26
pir||G82993 probable ATP-binding/permease fusion ABC transporter... 121 2e-26
dbj|BAA05389.1| (D26358) CmpD [Synechococcus sp.] 121 2e-26
pir||A70194 ABC transporter, ATP-binding protein homolog - Lyme ... 121 2e-26
gb|AAC05643.1| (AF033673) unknown [Pseudomonas marginalis pv. al... 121 2e-26
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 121 2e-26
pir||A69095 cobalt transport ATP-binding protein O - Methanobact... 121 2e-26
pir||F71849 amino acid ABC transporter, ATP-binding protein - He... 121 2e-26
pir||F83488 probable ATP-binding component of ABC transporter PA... 121 2e-26
sp|P27675|GLNQ_BACST GLUTAMINE TRANSPORT ATP-BINDING PROTEIN GLN... 120 3e-26
sp|Q58903|YF08_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 120 3e-26
emb|CAB59828.1| (AJ012388) hypothetical protein [Lactococcus lac... 120 3e-26
sp|P14175|PROV_ECOLI GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BIN... 120 4e-26
sp|P48243|GLUA_CORGL GLUTAMATE TRANSPORT ATP-BINDING PROTEIN GLU... 120 4e-26
gi|10954682 probable mikimopine transporter gene~similar to potA... 120 4e-26
emb|CAC11998.1| (AL445065) ABC transporter related protein [Ther... 120 4e-26
sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 120 4e-26
pir||A71243 probable maltose/maltodextrin transport ATP-binding ... 120 5e-26
pir||B45917 nucleotide-binding protein proV - Salmonella typhimu... 119 6e-26
dbj|BAB03891.1| (AP001507) amino acid ABC transporter (ATP-bindi... 119 6e-26
sp|P17328|PROV_SALTY GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BIN... 119 8e-26
sp|P44785|ABC_HAEIN ATP-BINDING PROTEIN ABC >gi|1073885|pir||C64... 119 8e-26
emb|CAB76078.1| (AL157953) putative ABC transporter ATP-binding ... 119 8e-26
pir||H70432 ABC transporter - Aquifex aeolicus >gi|2983897|gb|AA... 118 1e-25
pir||JC5348 cdd4 protein - Clostridium difficile >gi|1770140|emb... 118 2e-25
sp|P42332|BCRA_BACLI BACITRACIN TRANSPORT ATP-BINDING PROTEIN BC... 118 2e-25
pir||T45265 cobalt transport ATP-binding protein O homolog [impo... 118 2e-25
sp|P73450|NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC ... 118 2e-25
pir||C64666 glutamine transport protein glnQ - Helicobacter pylo... 117 2e-25
pir||H64716 ABC transporter, ATP-binding protein - Helicobacter ... 117 2e-25
pir||F71800 ABC transporter, ATP-binding protein - Helicobacter ... 117 2e-25
pir||A83621 probable ATP-binding component of ABC transporter PA... 117 2e-25
pir||E83012 probable ATP-binding component of ABC transporter PA... 117 2e-25
pir||B71030 probable ATP-binding transport protein - Pyrococcus ... 117 3e-25
pir||E72364 ABC transporter, ATP-binding protein - Thermotoga ma... 117 3e-25
sp|P21629|BRAF_PSEAE HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 116 4e-25
gi|10954918 Hypothetical gene [Agrobacterium tumefaciens] >gi|64... 116 4e-25
pir||C82266 ABC transporter, ATP-binding protein VC0907 [importe... 116 4e-25
gb|AAF91339.1|AF249729_1 (AF249729) ATPase OpuCA [Listeria monoc... 116 5e-25
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 116 5e-25
gb|AAK41340.1| ABC transporter, ATP binding subunit [Sulfolobus ... 116 7e-25
sp|P72297|OCCP_RHIME OCTOPINE PERMEASE ATP-BINDING PROTEIN P >gi... 116 7e-25
gb|AAC45666.1| (AF010307) AbcC [Helicobacter pylori] 116 7e-25
pir||G69633 glutamine transport protein glnQ - Bacillus subtilis... 116 7e-25
emb|CAC05961.1| (AL391763) ATP-binding protein [Streptomyces coe... 116 7e-25
pir||T31682 bcrA protein - Bacillus licheniformis >gi|4464278|gb... 115 9e-25
pir||D75444 branched-chain amino acid ABC transporter, ATP-bindi... 115 9e-25
sp|P32010|DRRA_STRPE DAUNORUBICIN RESISTANCE ATP-BINDING PROTEIN... 115 1e-24
sp|Q52666|BZTD_RHOCA GLUTAMATE/GLUTAMINE/ASPARTATE/ASPARAGINE TR... 115 1e-24
gi|11498586 osmoprotection protein (proV) [Archaeoglobus fulgidu... 115 1e-24
pir||E75108 daunorubicin resistance ATP-binding protein (drra-1)... 115 1e-24
dbj|BAA83955.1| (AB024563) YFIL [Bacillus halodurans] 115 1e-24
pir||F81348 ABC transport system ATP-binding protein Cj0774c [im... 115 1e-24
dbj|BAB04773.1| (AP001510) transposase (08)/ABC transporter (ATP... 115 1e-24
pir||D72485 probable high-affinity branched-chain amino acid tra... 115 2e-24
pir||G75124 abc-transporter ATP-binding protein PAB0545 - Pyroco... 115 2e-24
pir||T35756 probable branched chain amino acid transport ATP-bin... 115 2e-24
gb|AAG34388.1|AF197468_4 (AF197468) ATP/GTP binding protein; Nos... 115 2e-24
pir||E69771 ABC transporter (ATP-binding protein) homolog ydbJ -... 114 2e-24
pir||H75157 daunorubicin resistance ATP-binding protein (drra-2)... 114 2e-24
pir||H71006 probable ATP-binding transport protein - Pyrococcus ... 114 3e-24
pir||E72598 probable ABC-transporter ATP-binding protein APE1253... 114 3e-24
pir||C82526 ABC transporter ATP-binding protein XF2695 [imported... 114 3e-24
sp|O34900|YTMN_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 113 4e-24
sp|P45022|YA78_HAEIN PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 113 5e-24
gi|11499200 spermidine/putrescine ABC transporter, ATP-binding p... 113 5e-24
dbj|BAB05817.1| (AP001514) ABC transporter (ATP-binding protein)... 113 5e-24
gb|AAG20473.1| (AE005119) copper transport ATP-binding protein; ... 113 5e-24
sp|P50332|NODI_RHIGA NODULATION ATP-BINDING PROTEIN I >gi|100191... 113 6e-24
pir||A75208 sugar transport ATP-binding protein. PAB2232 - Pyroc... 113 6e-24
pir||F82303 ABC transporter, ATP-binding protein VC0589 [importe... 112 8e-24
sp|P37624|YHIH_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 112 1e-23
pir||B70483 ABC transporter - Aquifex aeolicus >gi|2984332|gb|AA... 112 1e-23
pir||F72756 probable multiple sugar-binding transport ATP-bindin... 112 1e-23
emb|CAC01581.1| (AL391041) putative branched amino acid transpor... 112 1e-23
sp|P36879|YADG_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 111 1e-23
pir||S77745 probable transport protein - Mycoplasma capricolum ... 111 1e-23
pir||H70610 probable ABC-typetransmembrane transport portein - M... 111 1e-23
gb|AAD44229.1|AF143772_35 (AF143772) DrrA [Mycobacterium avium] 111 2e-23
sp|P19844|NOSF_PSEST COPPER TRANSPORT ATP-BINDING PROTEIN NOSF >... 111 2e-23
pir||H72272 sugar ABC transporter, ATP-binding protein - Thermot... 111 2e-23
dbj|BAB04885.1| (AP001511) ABC transporter (ATP-binding protein)... 111 2e-23
gb|AAG20488.1| (AE005121) sulfate transport system ATP-binding p... 111 2e-23
gb|AAB46619.1| (L42008) xylose transport ATP-binding protein [Ba... 110 3e-23
sp|P45073|YHBG_HAEIN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 110 3e-23
gb|AAA74953.1| (U31647) ATP-binding transport protein [Anabaena ... 110 4e-23
pir||G69803 ABC transporter (ATP-binding protein) homolog yfiL -... 110 4e-23
gb|AAD20382.1| (AF125999) daunorubicin resistance protein A [Myc... 110 4e-23
pir||D75447 ABC transporter, ATP-binding protein - Deinococcus r... 110 4e-23
pir||E75579 branched-chain amino acid ABC tranpsorter, ATP bindi... 110 4e-23
gb|AAK42960.1| ABC transporter, ATP binding protein (glucose) [S... 109 5e-23
sp|P37774|YECC_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP... 109 5e-23
pir||T44443 gliding motility protein [imported] - Flavobacterium... 109 5e-23
pir||D69068 methyl coenzyme M reductase system, component A2 hom... 109 5e-23
emb|CAB37661.1| (AJ224479) cdd4-like protein [Bacillus sphaericus] 109 5e-23
sp|P08720|NODI_RHILV NODULATION ATP-BINDING PROTEIN I >gi|78028|... 109 7e-23
pir||H72301 ABC transporter, ATP-binding protein - Thermotoga ma... 109 7e-23
gb|AAA50516.1| (M77784) transport protein [Agrobacterium tumefac... 109 9e-23
sp|P72335|NODI_RHIS3 NODULATION ATP-BINDING PROTEIN I >gi|153162... 109 9e-23
pir||E71123 probable sugar transport ATP-binding protein - Pyroc... 109 9e-23
dbj|BAA75396.1| (AB013378) YhaQ [Bacillus halodurans] 109 9e-23
pir||C82810 nitrate ABC transporter ATP-binding protein XF0412 [... 109 9e-23
dbj|BAB04722.1| (AP001510) ABC transporter (ATP-binding protein)... 109 9e-23
pir||H71066 probable ATP-binding transport protein - Pyrococcus ... 108 1e-22
pir||E81023 ABC transporter, ATP-binding protein NMB1948 [import... 108 1e-22
pir||D82147 amino acid ABC transporter, ATP-binding protein VC18... 108 1e-22
pir||G83031 probable ATP-binding component of ABC transporter PA... 108 1e-22
emb|CAA75761.1| (Y15759) ORF1 [Streptomyces rochei] 108 2e-22
pir||E83001 probable ATP-binding component of ABC transporter PA... 108 2e-22
gb|AAG19353.1| (AE005030) spermidine/putrescine ABC transporter ... 108 2e-22
sp|P26050|NODI_BRAJA NODULATION ATP-BINDING PROTEIN I >gi|281683... 108 2e-22
prf||1914270A nodulation protein [Bradyrhizobium japonicum] 108 2e-22
sp|P77795|YDCT_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 108 2e-22
gi|11499468 daunorubicin resistance ATP-binding protein (drrA) [... 108 2e-22
pir||F82386 amino acid ABC transporter, ATP-binding protein VCA1... 108 2e-22
dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.] 107 3e-22
sp|Q45460|OPBA_BACSU CHOLINE TRANSPORT ATP-BINDING PROTEIN OPUBA... 107 3e-22
pir||H70788 probable peptidetransport system ABC-transporter ATP... 107 3e-22
gi|10955056 occP [Agrobacterium tumefaciens] >gi|464298|sp|P3511... 107 3e-22
pir||S76626 ABC-type transport protein sll0489 - Synechocystis s... 107 3e-22
gi|7524830 sulfate transport system permease protein [Chlorella ... 107 3e-22
pir||B70118 glycine betaine, L-proline ABC transporter, ATP-bind... 107 3e-22
emb|CAB88183.1| (AL352972) putative ABC transporter ATP-binding ... 107 3e-22
pir||H83609 sulfate transport protein CysA PA0280 [imported] - P... 107 3e-22
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 106 5e-22
pir||C71081 probable resistance ATP-binding protein - Pyrococcus... 106 5e-22
pir||G72290 branched chain amino acid ABC transporter, ATP-bindi... 106 5e-22
pir||D72257 hypothetical protein TM1403 - Thermotoga maritima (s... 106 5e-22
pir||G72543 probable ABC transporter ATP-binding protein APE1635... 106 5e-22
pir||D72484 probable ATP-binding protein APE2516 - Aeropyrum per... 106 5e-22
pir||B82536 ABC transporter ATP-binding protein XF2617 [imported... 106 5e-22
pir||B64816 ABC-type transport protein ybhF - Escherichia coli >... 106 6e-22
sp|P75776|YBHF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 106 6e-22
gi|7304849 ATP-binding cassette 1, sub-family A, member 1 [Mus m... 106 8e-22
gb|AAB01532.1| (U38418) ProV [Bacillus subtilis] 106 8e-22
gi|5915658 ATP-binding cassette, sub-family A member 1; ATP-bind... 106 8e-22
gb|AAF86276.1|AF275948_1 (AF275948) ABCA1 [Homo sapiens] 106 8e-22
gb|AAF98175.1|AF285167_1 (AF285167) ATP-binding cassette transpo... 106 8e-22
pir||D83281 histidine transport protein HisP PA2926 [imported] -... 106 8e-22
gi|11429275 ATP-binding cassette, sub-family A member 1 [Homo sa... 106 8e-22
gb|AAG39073.1|AF287263_1 (AF287263) ATP-binding cassette 1, sub-... 106 8e-22
pir||B75076 daunorubicin resistance ATP-binding protein drra PAB... 105 1e-21
pir||G75311 branched-chain amino acid ABC transporter, ATP-bindi... 105 1e-21
gb|AAC13363.1| (U75364) putative ABC transporter subunit [Rhodop... 105 1e-21
gb|AAC80570.1| (AF105431) NodI [Bradyrhizobium sp. SNU001] 105 1e-21
pir||T35757 probable branched chain amino acid transport ATP-bin... 105 1e-21
pir||C65111 probable ABC transporter (ntrA/rpoN 5'region) - Esch... 104 2e-21
gb|AAC61484.1| (AF082738) ABC transporter ATP-binding protein [S... 104 2e-21
pir||T36523 probable ABC-type transport system ATP-binding prote... 104 2e-21
pir||H75288 ABC transporter, ATP-binding protein - Deinococcus r... 104 2e-21
emb|CAA65866.1| (X97228) yhbG-pg [Porphyromonas gingivalis] 104 2e-21
sp|P40735|YBXA_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 104 2e-21
sp|P31220|YHBG_ECOLI PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 104 2e-21
sp|P24693|YHBG_THIFE PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 103 4e-21
sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEI... 103 4e-21
pir||C71237 probable transport-ATP binding protein - Pyrococcus ... 103 4e-21
pir||H72555 probable transporter ATP-binding protein APE1732 - A... 103 4e-21
pir||B83294 probable ATP-binding component of ABC transporter PA... 103 4e-21
gb|AAK42130.1| Antibiotic ABC transporter ATP binding protein [S... 103 5e-21
pir||E69162 sulfate transport system ATP-binding - Methanobacter... 103 5e-21
gb|AAC44218.1| (U59229) PhoC [Sinorhizobium meliloti] 102 7e-21
pir||E82879 ABC transporter UU539 [imported] - Ureaplasma urealy... 102 9e-21
pir||E81337 ABC-transporter ATP-binding protein Cj0669 [imported... 102 9e-21
gb|AAK42824.1| ABC transporter, ATP binding protein [Sulfolobus ... 102 1e-20
pir||G69192 ABC transporter (glutamine transport ATP-binding pro... 102 1e-20
gi|11499426 cobalt transport ATP-binding protein (cbiO-2) [Archa... 102 1e-20
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 102 1e-20
sp|O30506|AOTP_PSEAE ARGININE/ORNITHINE TRANSPORT ATP-BINDING PR... 102 1e-20
pir||E72378 sugar ABC transporter, ATP-binding protein - Thermot... 102 1e-20
pir||G75169 abc transporter ATP-binding protein PAB0350 - Pyroco... 102 1e-20
gb|AAK42315.1| ABC transporter, ATP binding protein. [Sulfolobus... 101 2e-20
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 101 2e-20
gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [S... 101 2e-20
sp|P23703|NODI_RHILO NODULATION ATP-BINDING PROTEIN I >gi|95215|... 101 2e-20
pir||S74048 probable daunorubicin resistance protein - Sulfolobu... 101 2e-20
pir||E75122 hypothetical protein PAB1845 - Pyrococcus abyssi (st... 101 2e-20
dbj|BAB04795.1| (AP001510) sugar ABC transporter (ATP-binding pr... 101 2e-20
pir||T45204 probable sugar ABC transporter ugpC [imported] - Myc... 101 3e-20
sp|P54592|YHCH_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 101 3e-20
pir||B64458 high-affinity branched-chain amino acid transport AT... 101 3e-20
pir||H69746 ABC transporter (binding protein) homolog ybdA - Bac... 101 3e-20
gb|AAB88581.1| (M93437) CycB [Thermus thermophilus] 101 3e-20
pir||B71234 probable transport protein - Pyrococcus horikoshii >... 101 3e-20
pir||H82417 ABC transporter, ATP-binding protein VCA0782 [import... 101 3e-20
pir||C69049 ABC transporter (ATP-binding protein) - Methanobacte... 100 3e-20
pir||G81344 ABC transport system ATP-binding protein Cj0732 [imp... 100 3e-20
emb|CAC11290.1| (AL445063) probable ATP-binding protein [Thermop... 100 3e-20
sp|P55476|NODI_RHISN NODULATION ATP-BINDING PROTEIN I >gi|218242... 100 4e-20
dbj|BAA75384.1| (AB013374) MsmX [Bacillus halodurans] 100 4e-20
gi|10955070 agtA [Agrobacterium tumefaciens] >gi|6689864|gb|AAF2... 100 4e-20
dbj|BAB04231.1| (AP001508) ABC transporter (ATP-binding protein)... 100 4e-20
gb|AAK41557.1| Antibiotic ABC transporter, ATP binding protein [... 100 6e-20
sp|P26760|RT1B_ACTPL RTX-I TOXIN DETERMINANT B (TOXIN RTX-I SECR... 100 6e-20
pir||H71241 probable multiple sugar-binding transport ATP-bindin... 100 6e-20
pir||B83037 probable ATP-binding component of ABC transporter PA... 100 6e-20
gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomi... 99 1e-19
emb|CAC01582.1| (AL391041) putative branched amino acid transpor... 99 1e-19
dbj|BAB07698.1| (AP001520) ABC transporter (ATP-binding protein)... 99 1e-19
pir||D35718 phnC protein - Escherichia coli >gi|147196|gb|AAA243... 99 1e-19
sp|P16677|PHNC_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN ... 99 1e-19
pir||E75120 hypothetical protein PAB1855 - Pyrococcus abyssi (st... 99 1e-19
pir||C30169 leukotoxin expression protein B - Pasteurella haemol... 98 2e-19
sp|P16532|HLYB_PASHA LEUKOTOXIN SECRETION ATP-BINDING PROTEIN >g... 98 2e-19
pir||A72279 sugar ABC transporter, ATP-binding protein - Thermot... 98 2e-19
pir||B72582 probable nodulation ATP-binding protein APE1934 - Ae... 98 2e-19
pir||C81187 ABC transporter, ATP-binding protein NMB0549 [import... 98 2e-19
emb|CAC05759.1| (AL391751) putative ABC transporter ATP-binding ... 98 2e-19
gb|AAG20921.1| (AE005158) sn-glycerol-3-phosphate transport syst... 98 2e-19
pir||JN0849 hypothetical 35K protein - Streptomyces lividans >gi... 98 2e-19
gb|AAA25544.1| (M24197) leukotoxin (LktB) [Pasteurella haemolytica] 98 2e-19
sp|P55122|HLYB_PASSP LEUKOTOXIN SECRETION ATP-BINDING PROTEIN >g... 98 2e-19
sp|P44531|AFUC_HAEIN PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTE... 98 2e-19
pir||H71008 probable ATP-binding transport protein - Pyrococcus ... 98 2e-19
pir||F71654 ABC transporter ATP-binding protein (abcT2) RP508 - ... 98 2e-19
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 98 2e-19
pir||E83222 NosF protein PA3394 [imported] - Pseudomonas aerugin... 98 2e-19
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 98 2e-19
gb|AAC71714.1| (AF061267) ATPase component HtxD [Pseudomonas stu... 98 3e-19
gb|AAD23570.1|AF121946_1 (AF121946) maltose transport protein Ma... 98 3e-19
pir||E72536 probable oligopeptide transport ATP-binding protein ... 98 3e-19
dbj|BAB03314.1| (AB011415) AlgS [Sphingomonas sp.] 98 3e-19
sp|Q58429|YA23_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 97 4e-19
pir||E70952 probable sugC protein - Mycobacterium tuberculosis (... 97 4e-19
pir||C71220 probable sugar-binding transport ATP-binding protein... 97 4e-19
gb|AAF15371.1|U66588_3 (U66588) PaxB [Pasteurella aerogenes] 97 4e-19
pir||I39646 secretion protein B - Actinobacillus pleuropneumonia... 97 5e-19
gi|11498898 ABC transporter, ATP-binding protein [Archaeoglobus ... 97 5e-19
pir||G81926 probable polyamine permease ATP-binding protein NMA0... 97 5e-19
emb|CAB94554.1| (AL359152) putative ABC transporter, ATP-binding... 97 5e-19
gb|AAK41416.1| Sugar ABC transporter [Sulfolobus solfataricus] 96 7e-19
gb|AAD24578.1|AF126010_1 (AF126010) trehalose/maltose transport ... 96 7e-19
pir||C81179 spermidine/putrescine ABC transporter, ATP-binding p... 96 7e-19
pir||C49219 toxin apxIII secretion protein apxIIIB - Actinobacil... 96 9e-19
sp|Q04473|RT3B_ACTPL RTX-III TOXIN DETERMINANT B (TOXIN RTX-III ... 96 9e-19
emb|CAA11724.1| (AJ223978) putative ABC transporter, YvrO [Bacil... 96 9e-19
emb|CAA11111.1| (AJ223088) hypothetical protein [Pseudomonas stu... 96 9e-19
pir||E83248 probable ATP-binding component of ABC transporter PA... 96 9e-19
sp|Q01937|LACK_AGRRD LACTOSE TRANSPORT ATP-BINDING PROTEIN LACK ... 96 1e-18
pir||MMECMK inner membrane protein malK - Escherichia coli >gi|4... 96 1e-18
pir||B70849 hypothetical protein Rv0073 - Mycobacterium tubercul... 96 1e-18
pir||B75207 multiple sugar-binding transport ATP-binding protein... 96 1e-18
gi|11465470 unknown; ABC transporter [Cyanidium caldarium] >gi|6... 96 1e-18
pir||C81916 probable ABC transporter ATP-binding protein NMA0729... 96 1e-18
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 96 1e-18
pir||H82727 sugar ABC transporter ATP-binding protein XF1067 [im... 95 1e-18
sp|P23702|HLYB_ACTAC LEUKOTOXIN SECRETION ATP-BINDING PROTEIN >g... 95 2e-18
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 95 2e-18
gb|AAD47593.1|AF140784_2 (AF140784) Vexp2 [Streptococcus pneumon... 95 2e-18
sp|P94360|MSMX_BACSU PROBABLE MULTIPLE SUGAR-BINDING TRANSPORT A... 94 3e-18
pir||A71280 probable ABC transporter, ATP-binding protein - syph... 94 3e-18
pir||A75587 probable urea/short-chain amide ABC transporter, ATP... 94 3e-18
gb|AAG32068.1|AF317790_1 (AF317790) ATP-binding transporter AviA... 94 3e-18
sp|Q50734|YP64_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 94 3e-18
pir||T47062 hypothetical protein [imported] - Yersinia pestis >g... 94 3e-18
gb|AAC04471.1| (AF007800) MtlK [Pseudomonas fluorescens] 94 4e-18
pir||B72097 dipeptide transporter ATPase - Chlamydophila pneumon... 94 4e-18
gb|AAF23811.1|AF213822_26 (AF213822) ABC binding protein [Zymomo... 94 4e-18
gi|11497712 sulfate ABC transporter, ATP-binding protein (cysA) ... 93 6e-18
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 93 6e-18
gb|AAF81686.1|AF233069_9 (AF233069) unknown [Galdieria sulphuraria] 93 6e-18
pir||C75310 ABC transporter, ATP-binding protein - Deinococcus r... 93 8e-18
pir||F72485 probable high-affinity branched-chain amino acid tra... 92 1e-17
pir||S51777 xIIIB protein - Actinobacillus pleuropneumoniae >gi|... 92 1e-17
sp|Q07756|NODI_AZOCA NODULATION ATP-BINDING PROTEIN I >gi|486720... 92 2e-17
pir||C83353 probable ATP-binding component of ABC maltose/mannit... 92 2e-17
sp|P44662|FECE_HAEIN IRON(III) DICITRATE TRANSPORT ATP-BINDING P... 91 2e-17
pir||S61910 hypothetical protein 5 - Streptococcus parasanguis >... 91 3e-17
gb|AAC46148.1| (U50597) YfeB [Yersinia pestis] 91 3e-17
pir||C69992 ABC transporter (ATP-binding protein) homolog ytgB -... 91 3e-17
pir||B75459 sodium extrusion protein NatA - Deinococcus radiodur... 91 3e-17
dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein)... 91 3e-17
pir||E71045 probable ABC transporter - Pyrococcus horikoshii >gi... 90 4e-17
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 90 4e-17
sp|P23858|POTA_ECOLI SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING... 90 5e-17
sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANCE PROTEIN 3 (P-GLYCOPROT... 90 7e-17
pir||S76829 hypothetical protein - Synechocystis sp. (strain PCC... 90 7e-17
emb|CAB77334.1| (AL160331) ABC transporter ATP-binding protein [... 90 7e-17
gi|6679297 P glycoprotein 2 [Mus musculus] >gi|126929|sp|P21440|... 89 9e-17
gi|11498042 iron (III) ABC transporter, ATP-binding protein (hem... 89 1e-16
pir||T03543 probable cobalt transport system ATP-binding protein... 89 1e-16
emb|CAA70125.1| (Y08921) msiK [Streptomyces reticuli] 88 3e-16
gi|6981354 P-glycoprotein 3/ multidrug resistance 2 [Rattus norv... 87 3e-16
gb|AAG20232.1| (AE005098) phosphonates transport ATP-binding; Ph... 87 3e-16
pir||A72260 ABC transporter, ATP-binding protein - Thermotoga ma... 86 7e-16
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 85 1e-15
sp|Q55281|MNTA_SYNY3 MANGANESE TRANSPORT SYSTEM ATP-BINDING PROT... 84 3e-15
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 84 4e-15
pir||C70355 ABC transporter - Aquifex aeolicus >gi|2983231|gb|AA... 83 5e-15
dbj|BAB03338.1| (AB035453) ABC transporter [Staphylococcus aureus] 83 5e-15
sp|P55604|Y4OS_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 82 1e-14
pir||A70018 multiple sugar ABC transporter (ATP-bindin) homolog ... 82 1e-14
sp|Q57554|Y089_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 82 2e-14
sp|P95155|MODC_MYCTU MOLYBDENUM TRANSPORT ATP-BINDING PROTEIN MO... 82 2e-14
gb|AAD41066.1|AF128999_2 (AF128999) SitB [Salmonella typhimurium] 82 2e-14
pir||T45470 ATP-binding ABC transport protein [imported] - Erysi... 81 2e-14
pir||B71128 probable iron (III) dicitrate transport ATP-binding ... 80 4e-14
pir||S50217 multidrug resistance protein 3 - rat (fragment) >gi|... 78 3e-13
emb|CAB60586.1| (AL117200) contains similarity to Pfam domain: P... 77 4e-13
pir||T31617 hypothetical protein Y50E8A.m - Caenorhabditis elegans 77 4e-13
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 77 4e-13
pir||T27215 hypothetical protein Y57G11C.1 - Caenorhabditis eleg... 77 5e-13
emb|CAB69672.1| (AL137165) probable ABC transporter protein, ATP... 77 5e-13
pir||I48120 P-glycoprotein - Chinese hamster (fragment) >gi|5768... 75 2e-12
gi|11498005 ABC transporter, ATP-binding protein [Archaeoglobus ... 73 9e-12
gb|AAD56937.1|AF180520_2 (AF180520) ATP-binding protein MtsB [St... 72 2e-11
gb|AAD15237.1| (L17003) member of super-family of ABC proteins [... 71 3e-11
>pir||H75161 ribose abc transporter, ATP-binding protein (rbsa) PAB0303 -
Pyrococcus abyssi (strain Orsay)
>gi|5457885|emb|CAB49375.1| (AJ248284) ribose ABC
transporter, ATP-binding protein (rbsA) [Pyrococcus
abyssi]
Length = 498
Score = 965 bits (2467), Expect = 0.0
Identities = 498/498 (100%), Positives = 498/498 (100%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE
Sbjct: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA
Sbjct: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK
Sbjct: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV
Sbjct: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE
Sbjct: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLS 360
ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLS
Sbjct: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLS 360
Query: 361 RVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
RVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV
Sbjct: 361 RVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK
Sbjct: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
Query: 481 TEEFTLEKLGLLMGGVNA 498
TEEFTLEKLGLLMGGVNA
Sbjct: 481 TEEFTLEKLGLLMGGVNA 498
>pir||D71179 probable sugar ABC transporter - Pyrococcus horikoshii
>gi|3258144|dbj|BAA30827.1| (AP000007) 498aa long
hypothetical sugar transport ATP-binding protein
[Pyrococcus horikoshii]
Length = 498
Score = 820 bits (2096), Expect = 0.0
Identities = 408/498 (81%), Positives = 460/498 (91%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M AVEM I KVYPDGVVAL+GV+ VEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE
Sbjct: 1 MLAVEMRRIYKVYPDGVVALKGVDFTVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+KVFG +V FNGPWDAIR+GIAMVYQHFTL+PTFTVLENLYL+ML+INP I I++V KLA
Sbjct: 61 VKVFGDKVEFNGPWDAIRKGIAMVYQHFTLIPTFTVLENLYLSMLTINPNITINEVRKLA 120
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
KEKM+++GF VPL+++VEDLP+GIQQRVEIIKALM NAKILILDEPTSVLTP+EV+ELFK
Sbjct: 121 KEKMKDIGFSVPLDDVVEDLPIGIQQRVEIIKALMANAKILILDEPTSVLTPLEVEELFK 180
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
TLR LKE GITVIFITHKLKEVKEITDRVTVLRRGEVVG KT EVSER+LA+MMVQR++
Sbjct: 181 TLRKLKENGITVIFITHKLKEVKEITDRVTVLRRGEVVGVAKTKEVSERDLAKMMVQREI 240
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
VMEI K ++PGNT+L+VEDLWVKDDRGLDAVKGVSFEL+EGEILGIAGVQGNGQ+ELAE
Sbjct: 241 VMEIKKSPASPGNTVLRVEDLWVKDDRGLDAVKGVSFELKEGEILGIAGVQGNGQKELAE 300
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLS 360
ALAGIR EKG+IELLG+DVT+L A +RYK+GLAYVPDSR+VGLVLDM+VVENV+LTNL
Sbjct: 301 ALAGIRRIEKGRIELLGRDVTELSADKRYKAGLAYVPDSRKVGLVLDMSVVENVILTNLP 360
Query: 361 RVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
V+ RISW+KAN++ E+VE+F+VL+SS PIKHLSGGNQQKVMVGREIIREPKV++
Sbjct: 361 SVMRGRRISWEKANKIGKEIVERFDVLVSSLSTPIKHLSGGNQQKVMVGREIIREPKVVI 420
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
VSEPTQGLDIGATEFIRKTL+ LRD+ KGILLISTDLDEILQLSDR+AV+YEGKIM+IGK
Sbjct: 421 VSEPTQGLDIGATEFIRKTLVSLRDQGKGILLISTDLDEILQLSDRIAVMYEGKIMAIGK 480
Query: 481 TEEFTLEKLGLLMGGVNA 498
EEFTLEKLGLLMGGVNA
Sbjct: 481 VEEFTLEKLGLLMGGVNA 498
>gi|11498492 ribose ABC transporter, ATP-binding protein (rbsA-1) [Archaeoglobus
fulgidus] >gi|7430344|pir||G69360 probable ribose ABC
transporter rbsA-1 - Archaeoglobus fulgidus
>gi|2649712|gb|AAB90351.1| (AE001042) ribose ABC
transporter, ATP-binding protein (rbsA-1) [Archaeoglobus
fulgidus]
Length = 495
Score = 460 bits (1171), Expect = e-128
Identities = 245/492 (49%), Positives = 339/492 (68%), Gaps = 5/492 (1%)
Query: 6 MSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG 65
M IVK + +VA +N +V+ GEIHGLLGENGAGK+TLM ILYG +P +GEI G
Sbjct: 1 MRNIVKRF-GSLVANDHINFEVKRGEIHGLLGENGAGKTTLMNILYGIYQPDEGEIIFEG 59
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLS-INPGIKISDVEKLAKEKM 124
K+V F P DAI GI MV+QHF LVP VL+N+ L + +P I VE+ +
Sbjct: 60 KKVRFKSPKDAISAGIGMVHQHFMLVPRMNVLQNIVLGYRTPSDPLINHRWVEERIERLS 119
Query: 125 REVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRN 184
+ G +V L E++ +L VG +QRVEI+KAL + K+LILDEPT+VLTP EV LF L++
Sbjct: 120 EKYGIDVALYEVIMNLSVGEEQRVEILKALFRDVKLLILDEPTAVLTPQEVDSLFYALKS 179
Query: 185 LKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEI 244
+ + G+T+IFITHKLKE ++TDR+TVLRRG VGTV TSE +EREL RMMV RD+V++I
Sbjct: 180 MTKSGLTIIFITHKLKEALKVTDRITVLRRGRKVGTVITSETNERELTRMMVGRDIVLDI 239
Query: 245 SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAG 304
+K STPG +L+VEDLWV+D+RG AVKGVSF +REGEI GIAGV GNGQ+EL EA+AG
Sbjct: 240 TKPPSTPGREVLRVEDLWVRDERGNYAVKGVSFSIREGEIFGIAGVSGNGQKELEEAIAG 299
Query: 305 IRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSR-RVGLVLDMNVVENVVLTNLSRVL 363
+R E+G+I L GKD+T ER +AY+P+ R VGL ++V+EN++L + +
Sbjct: 300 LRKVERGRIILDGKDITAKGVAER--EDIAYIPEDRIGVGLAPSLSVLENLMLKDFKKYK 357
Query: 364 HKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSE 423
+ +++++ + +VE+F V S +P LSGGN Q++++ RE+ R P++I+ S+
Sbjct: 358 KRFSLNFEEMEKRAMSLVEEFSVKTPSLHSPAGTLSGGNIQRLILARELSRNPRLIIASQ 417
Query: 424 PTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
PT+GLD+ +++R+ L++ +LLIS DLDEI QLSDR+ V+YEG+I I +
Sbjct: 418 PTRGLDVAGIDYVRRRLIEAAMRGSAVLLISEDLDEIFQLSDRIGVMYEGEIRGIVDRKN 477
Query: 484 FTLEKLGLLMGG 495
EK+G LM G
Sbjct: 478 ANYEKIGYLMAG 489
>pir||G72418 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980593|gb|AAD35197.1|AE001696_11
(AE001696) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 507
Score = 459 bits (1169), Expect = e-128
Identities = 247/499 (49%), Positives = 343/499 (68%), Gaps = 9/499 (1%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AV M IVK +P GV+A V+L VE+GEIH ++GENGAGK+TLM+ LYG +KP +GEI
Sbjct: 4 AVVMKRIVKRFP-GVLANDHVDLFVEKGEIHAIVGENGAGKTTLMKQLYGLLKPDEGEIY 62
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
+ GK V F+GP DAI+ GI MV+QHF LV T EN+ + M GI + D +K KE
Sbjct: 63 INGKRVEFSGPADAIKSGIGMVHQHFMLVDNLTAYENVIIGM-EPRKGILL-DRKKARKE 120
Query: 123 KMR---EVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
R E G + ++ +ED+PVG+QQRVEIIK L A+ILILDEPT+VLTP E +ELF
Sbjct: 121 VKRLSEEYGLTIDVDMKIEDMPVGLQQRVEIIKTLYRGAEILILDEPTAVLTPQETEELF 180
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+ L+ LK+ G T+IFI+HKL EV EI+DR+TV+R+G V G + TS+ + +E+AR+MV RD
Sbjct: 181 EVLKRLKKSGKTIIFISHKLNEVMEISDRITVMRQGRVTGNLITSQTTPQEIARLMVGRD 240
Query: 240 VVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELA 299
VV+ + K G T+LK+EDLWVKD+R LDAVKGVSFE++ GEI+GIAGV GNGQ EL
Sbjct: 241 VVLTVEKKPKEAGETLLKIEDLWVKDNRKLDAVKGVSFEVKRGEIVGIAGVAGNGQSELV 300
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSR-RVGLVLDMNVVENVVLTN 358
EA+ G+R E+G++ G+D+T G+ +VP+ R + GL++D N +L
Sbjct: 301 EAITGLRGAERGRVYFKGEDITGYDPKRLRDLGMFHVPEDRLKRGLIVDFPAYFNTILGR 360
Query: 359 --LSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREP 416
+ + G ++ + + ++ EKF++ + + SGGNQQK++V RE+ P
Sbjct: 361 HMIEPFVKSGFLNMKEIKRFSKQLFEKFDIRPRNIELLAGSFSGGNQQKIIVAREMSFSP 420
Query: 417 KVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
+++VV++PT+GLD+GA EFI KTL+ +RD G+LLIS +LDEI LSDR+ V+YEG+IM
Sbjct: 421 ELLVVAQPTRGLDVGAIEFIHKTLVSMRDAGVGVLLISMELDEIFSLSDRILVMYEGQIM 480
Query: 477 SIGKTEEFTLEKLGLLMGG 495
K EE T E++GL+M G
Sbjct: 481 GEVKPEETTPEEVGLMMAG 499
>emb|CAC14305.1| (AJ276209) putative ATP-binding protein of an ABC-transporter
[Clostridium sticklandii]
Length = 513
Score = 436 bits (1108), Expect = e-121
Identities = 234/498 (46%), Positives = 323/498 (63%), Gaps = 8/498 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VEM I K + D VA ++L V GE+H LLGENGAGKSTLM ILYG PT G+I +
Sbjct: 15 VEMKSITKKFGD-FVANDNIDLTVHRGEVHALLGENGAGKSTLMNILYGLYTPTDGKIFI 73
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL---A 120
GKE + P AI GI MV+QHF LVP FTV EN+ L M + K D+EK
Sbjct: 74 EGKEAVIDNPNKAISLGIGMVHQHFMLVPPFTVAENIILGMEPMKT-FKQVDMEKAIADV 132
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
K + G V V D+ VG+QQRVEI+KAL A+ILILDEPT+VLTP E+KEL
Sbjct: 133 KAISEKYGLYVDPKARVMDITVGMQQRVEILKALYRGAEILILDEPTAVLTPQEIKELIX 192
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+RNL + G T+I ITHKLKE+KE D T++RRG+ + TV S+ E +LA MMV R+V
Sbjct: 193 IIRNLTKEGKTIILITHKLKEIKEAADYCTIIRRGKRIDTVDVSQTDENQLASMMVGREV 252
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
++ K + G+T+LK+EDL KD+RGL A+ G+ E+R GEILGIAGV GNGQ EL E
Sbjct: 253 TFKVDKNDAIYGDTVLKIEDLKAKDNRGLFALNGLDLEVRRGEILGIAGVDGNGQSELVE 312
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSR-RVGLVLDMNVVENVVLTNL 359
+ G++ E G + + GK++ SG++ +P+ R + GLVLD V EN++L N
Sbjct: 313 VITGLKKAESGSVMINGKEIVNTNPRNIMDSGISNIPEDRQKHGLVLDFTVSENMILQNY 372
Query: 360 --SRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPK 417
R G++ + +E++ KF+V + + LSGGNQQKV++ RE+ +P
Sbjct: 373 KKERFSKNGKLLDSNIKQFADELINKFDVRPQNNALKARALSGGNQQKVIIAREVTNDPD 432
Query: 418 VIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMS 477
+++ ++PT+GLD+GA EF+ K+L++ RD+ KG+LL+S +LDEI+ +SDR+AVIYEGKI+
Sbjct: 433 LLIATQPTRGLDVGAIEFVHKSLIEQRDKGKGVLLVSFELDEIMSVSDRIAVIYEGKIVG 492
Query: 478 IGKTEEFTLEKLGLLMGG 495
I ++ +LGL+M G
Sbjct: 493 IVDAKDANENQLGLMMAG 510
>pir||E72493 probable ribose ABC transport system ATP-binding protein APE2588 -
Aeropyrum pernix (strain K1) >gi|5106294|dbj|BAA81605.1|
(AP000064) 498aa long hypothetical ribose ABC transport
system ATP-binding protein [Aeropyrum pernix]
Length = 498
Score = 432 bits (1098), Expect = e-120
Identities = 241/497 (48%), Positives = 329/497 (65%), Gaps = 16/497 (3%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AV M GIVKVYPDGV AL V+ + GE+H LLGENGAGK+TLMRILYGEIKPT GEI
Sbjct: 12 AVAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIY 71
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V+G++VS+ GPWDAIR GIAMVYQ F LV + TV EN+ + + S+ G+ S+ + E
Sbjct: 72 VWGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSL--GLGRSEARRRTLE 129
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+G E+ L + V DLP+G +QRVEIIKAL AK+LILDEPTS LTP+E ++LF TL
Sbjct: 130 TAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVK-TSEVSERELARMMVQRDVV 241
R LK+ G++V++ITHKL EV + DRVTVLRRG V ++ SE ELAR+MV +
Sbjct: 190 RLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMV-GTLP 248
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
+ G +L V + V D G++ V+ VS E+REGEI+GIAGV GNGQ EL +A
Sbjct: 249 PPTPRPPGKVGRELLSVRGVSVVVD-GVERVREVSLEVREGEIVGIAGVAGNGQEELVDA 307
Query: 302 LAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVL----T 357
+ G+R P +G IE+ G+ + + + Y++G Y+ R L +D +V EN+
Sbjct: 308 IIGLRRPVRGSIEVQGRRIE--GSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTA 365
Query: 358 NLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPK 417
+ + +L + R+ ++ +VE+F ++ S P+ LSGGNQQKV+VG E++R K
Sbjct: 366 SKTLLLRRSRL-----EDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFK 420
Query: 418 VIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMS 477
++V PTQGLDI T F+R L +L + GILL+STDLDEIL+LSDR+ V+ G++
Sbjct: 421 LLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTG 480
Query: 478 IGKTEEFTLEKLGLLMG 494
+ + + T EKLG+LMG
Sbjct: 481 VLERSQATPEKLGVLMG 497
>gb|AAG19337.1| (AE005028) ribose ABC transporter ATP-binding; RbsA [Halobacterium
sp. NRC-1]
Length = 506
Score = 429 bits (1092), Expect = e-119
Identities = 235/501 (46%), Positives = 322/501 (63%), Gaps = 7/501 (1%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
MT++ +SGI K +P GVVA V L VEEG +H LLGENGAGK+TLM +LYG +P +G
Sbjct: 1 MTSISLSGITKRFP-GVVANDDVTLTVEEGTVHALLGENGAGKTTLMNVLYGLYEPDEGT 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSIN-PGIKIS-DVEK 118
+ V G E +F+ P DAI GI M++QHF LV + TV EN+ L G+++ + +
Sbjct: 60 VSVDGTERAFDSPRDAIDAGIGMIHQHFMLVDSMTVAENVVLGNEPRKWRGLRVDREAAR 119
Query: 119 LAKEKMRE-VGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
A + + + GF+V V D+ VG+QQRVEI+KAL A +LILDEPT+VLTP EV +
Sbjct: 120 AAVDDLCDRYGFDVDPTARVADVSVGVQQRVEILKALYRGADVLILDEPTAVLTPQEVDD 179
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
LF+ L L G T+IFITHKL E D VTVLR G+ VG + T++ + ELA +MV
Sbjct: 180 LFEVLGELTAEGKTIIFITHKLGEALHAADDVTVLRDGKTVGALPTADTTREELAELMVG 239
Query: 238 RDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRE 297
R+V+++I TPG+T+L V+ L V D G+D V VS +R GE+ GIAGV GNGQ E
Sbjct: 240 REVLLDIDADAGTPGDTVLDVDSLTVTDGDGIDRVADVSMRVRAGEVYGIAGVDGNGQAE 299
Query: 298 LAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVL 356
L EA+ G+R+P+ G + G+DVT+ ++G+AYVP+ R GLV+D ++V N +L
Sbjct: 300 LVEAITGLRVPDAGAVTFDGEDVTQRSRRHHIEAGMAYVPEDRHERGLVMDSDLVANGIL 359
Query: 357 --TNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIR 414
RI W A +V++ ++V A LSGGNQQK +VGRE R
Sbjct: 360 GSQRAPAFTTGSRIDWQSARTHATDVIDTYDVRPRDADATAASLSGGNQQKFIVGREFER 419
Query: 415 EPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGK 474
+P ++VV PT+G+DIG+TEFIR+ LL+LRDE +LL+S+ LDE+ LSDR+AV+YEG+
Sbjct: 420 DPDLVVVMHPTRGVDIGSTEFIRERLLELRDEGTAVLLVSSKLDEVTSLSDRLAVLYEGR 479
Query: 475 IMSIGKTEEFTLEKLGLLMGG 495
+M + T E LGLLM G
Sbjct: 480 VMDEVDPDTVTEEALGLLMAG 500
>pir||D70009 probable ABC transporter yufO - Bacillus subtilis
>gi|1934812|emb|CAB07937.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635651|emb|CAB15144.1| (Z99120) similar
to ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 510
Score = 405 bits (1029), Expect = e-112
Identities = 223/504 (44%), Positives = 329/504 (65%), Gaps = 21/504 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM I K +P G+VA +NL+V++GEIH LLGENGAGKSTLM +L+G +P +GEI+V
Sbjct: 5 IEMLNIRKAFP-GIVANDNINLQVKKGEIHALLGENGAGKSTLMNVLFGLYQPERGEIRV 63
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G++V N P A GI MV+QHF LV TFTV EN+ L G +I K A ++
Sbjct: 64 RGEKVHINSPNKANDLGIGMVHQHFMLVDTFTVAENIILGKEPKKFG-RID--RKRAGQE 120
Query: 124 MREV----GFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
++++ G ++ D+ VG+QQR EI+K L A ILI DEPT+VLTP E+KEL
Sbjct: 121 VQDISDRYGLQIHPEAKAADISVGMQQRAEILKTLYRGADILIFDEPTAVLTPHEIKELM 180
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+ ++NL + G ++I ITHKLKE+ EI DRVTV+R+G+ + T+ + ++ ELA +MV R+
Sbjct: 181 QIMKNLVKEGKSIILITHKLKEIMEICDRVTVIRKGKGIKTLDVRDTNQDELASLMVGRE 240
Query: 240 VVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELA 299
V + K + PG +L ++ + VKD RG++ V+ +S ++ GEI+GIAGV GNGQ EL
Sbjct: 241 VSFKTEKRAAQPGAEVLAIDGITVKDTRGIETVRDLSLSVKAGEIVGIAGVDGNGQSELI 300
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVP-DSRRVGLVLDMNVVENVVLTN 358
EA+ G+R + G I L GK + L + +SG+ ++P D + GLVLD + EN++L +
Sbjct: 301 EAVTGLRKTDSGTITLNGKQIQNLTPRKITESGIGHIPQDRHKHGLVLDFPIGENILLQS 360
Query: 359 LSR-------VLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGRE 411
+ VLHKG + + KA + E ++V + LSGGNQQK ++GRE
Sbjct: 361 YYKKPYSALGVLHKGEM-YKKARSLITE----YDVRTPDEYTHARALSGGNQQKAIIGRE 415
Query: 412 IIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIY 471
I R P +++ ++PT+GLD+GA EF+ K L++ RD K +LL+S +L+EI+ LSDR+AVI+
Sbjct: 416 IDRNPDLLIAAQPTRGLDVGAIEFVHKKLIEQRDAGKAVLLLSFELEEIMNLSDRIAVIF 475
Query: 472 EGKIMSIGKTEEFTLEKLGLLMGG 495
EG+I++ +E T ++LGLLM G
Sbjct: 476 EGRIIASVNPQETTEQELGLLMAG 499
>pir||D75454 sugar ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6458681|gb|AAF10532.1|AE001948_1 (AE001948) sugar
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 521
Score = 385 bits (978), Expect = e-106
Identities = 226/511 (44%), Positives = 321/511 (62%), Gaps = 23/511 (4%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+ + GI K +P V+A ++L V+ G +H L GENGAGKSTLM+I+YG PT GEI
Sbjct: 17 ALSLRGITKRFPL-VLANDDISLDVKWGSVHALCGENGAGKSTLMKIVYGAQPPTSGEIV 75
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM-----LSINPGIKISDVE 117
V G+ VSF P DAI +GI MV+QHF LV T TV EN+ L SIN G + V
Sbjct: 76 VDGQPVSFASPADAIAQGIGMVFQHFQLVDTLTVTENVILGAEPTQGTSINYGAARARVA 135
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
+L +R+ F++ + V DLPVG+QQ+VEI+K L A+ILILDEPT+VLTP E E
Sbjct: 136 EL----IRQFNFDLNPDARVGDLPVGLQQKVEILKTLYRGARILILDEPTAVLTPSETDE 191
Query: 178 LFKTLRN-LKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMV 236
LF L+N G VIFI+HKL EV I+D ++V+R G+++G++ + + LA+MMV
Sbjct: 192 LFDFLKNQYAASGNAVIFISHKLHEVLHISDTISVIRDGKMIGSIPAAGATTETLAKMMV 251
Query: 237 QRDVVMEISKGKSTPGNTILKVEDLWVKDDRG-----LDAVKGVSFELREGEILGIAGVQ 291
RDV + + K + PG L V+++ V+ + G +AV+ VSF++R GEI+GIAGV+
Sbjct: 252 GRDVSLRVDKRPAQPGEVALDVQNVTVRGENGGHGGHAEAVRDVSFQVRAGEIVGIAGVE 311
Query: 292 GNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNV 350
GNGQ EL EA+ G+ +P +G+I LG++ + E SGL++VP+ R GLVL+M+
Sbjct: 312 GNGQSELVEAITGL-LPYQGRITYLGREARGV--REVEASGLSHVPEDRNERGLVLEMST 368
Query: 351 VENVVLTNLSRVLHKGRISW---DKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVM 407
EN +L R G + D + E+ E+++V ST P SGGN QK++
Sbjct: 369 AENFILGEQDRAPFAGPLGLLRLDVIEQNARELSEQYDVRPRSTSLPAGRYSGGNAQKII 428
Query: 408 VGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRV 467
V RE+ + PK++V S+PT+G+DIGA EFI +++ RD+ +LLIS DL E++ L+DR+
Sbjct: 429 VAREMRKGPKILVASQPTRGVDIGAIEFIHARIVEARDQGLAVLLISADLGEVMNLADRI 488
Query: 468 AVIYEGKIMSIGKTEEFTLEKLGLLMGGVNA 498
V++EG+I E T LGLLM G A
Sbjct: 489 LVMFEGQIAGEVAASEATETGLGLLMTGSGA 519
>pir||D71338 probable ribose/galactose ABC transporter rbsA-2 - syphilis
spirochete >gi|3322598|gb|AAC65309.1| (AE001212)
ribose/galactose ABC transporter, ATP-binding protein
(rbsA-2) [Treponema pallidum]
Length = 533
Score = 349 bits (886), Expect = 4e-95
Identities = 207/520 (39%), Positives = 301/520 (57%), Gaps = 30/520 (5%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AVEM + +P GVVA V+ V+ E+H LLGENGAGKSTLM +L+G GE+
Sbjct: 4 AVEMRDVTVRFP-GVVANDCVSFGVQTAEVHALLGENGAGKSTLMGVLFGTCPKQSGELF 62
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK- 121
V G+ V P DA R GI MV+QHF LV TV EN+ +L + P + + + A
Sbjct: 63 VDGRSVCIRSPRDAARHGIGMVHQHFNLVHNLTVSENI---VLGVEPRARFARTDVRAAH 119
Query: 122 ----EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
E G V ++D+ VG+QQRVEI+K L +A++LI DEPT+VL P EV++
Sbjct: 120 RAVGELCERYGLAVDPYAKIQDITVGMQQRVEILKMLYRDARVLIFDEPTAVLAPQEVQQ 179
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
L + +R L G V+ ITHKL E+K I DR TVLRRG +GTV +EV E L MMV
Sbjct: 180 LMQVIRRLAREGKAVVLITHKLSEIKAIADRCTVLRRGACIGTVSVAEVGEERLVEMMVG 239
Query: 238 RDVVMEISKGKSTPGNTILKVEDLWVKDDRGLD----------------AVKGVSFELRE 281
V + + G +L+V L V R V+ VSF++R
Sbjct: 240 HAVDYALPRASRKDGACVLEVRSLSVGARRVTSGQMWADASPSAAPRAYGVRAVSFQVRC 299
Query: 282 GEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR 341
GEIL I GV GNGQ +L EA+AG+ +G+I L G ++ + ER G++Y+P+ RR
Sbjct: 300 GEILCITGVDGNGQSQLLEAIAGLVPVSEGQILLDGCEIQRTSVRERVLRGVSYIPEDRR 359
Query: 342 V-GLVLDMNVVENVVLTNLSRV--LHKGRISWDKANEMTNEVVEKFEVLLSSTKAPI--K 396
GLVLD +V EN+VL + R +G + + + + +KFEV + + +
Sbjct: 360 KHGLVLDFSVEENMVLRSYFRAPFARRGILDRRVIAQHAHALAKKFEVQSGALGCAVRAR 419
Query: 397 HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTD 456
LSGGNQQKV++ RE+ R P++++ ++PT+GLD+GA +++ + ++ R+ +LL S D
Sbjct: 420 TLSGGNQQKVIIARELHRAPRLLIAAQPTRGLDLGAVQYVHRAIVAERNRGGAVLLFSLD 479
Query: 457 LDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGGV 496
+DE+L L+D +AV+YEG+I+ + T ++LG LM G+
Sbjct: 480 MDEVLALADSIAVMYEGEIVGTVHACDATEQELGRLMSGM 519
>pir||D70184 probable ribose/galactose ABC transporter mglA - Lyme disease
spirochete >gi|2688601|gb|AAC67018.1| (AE001168)
ribose/galactose ABC transporter, ATP-binding protein
(mglA) [Borrelia burgdorferi]
Length = 536
Score = 343 bits (871), Expect = 2e-93
Identities = 191/531 (35%), Positives = 318/531 (58%), Gaps = 41/531 (7%)
Query: 6 MSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG 65
+ I K Y D VA V++K + GE+H +LGENGAGK+TLM+ +YG + G I + G
Sbjct: 8 LENITKKYGD-FVANDNVSIKFKAGEVHAILGENGAGKTTLMKTIYGIHQVNSGRIILKG 66
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG-IKISDVEKLAKEKM 124
+E++F +AIR GI MV+QHF L+P FT ++N+ L + G + K
Sbjct: 67 QEINFKDSSEAIRNGIGMVFQHFMLIPQFTAVQNIILGYENSKFGFLDYKQARKKISSLS 126
Query: 125 REVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRN 184
+ G ++ L + VEDL VG++Q++EI+K L NA I+I DEPT+VL P EV + L+
Sbjct: 127 EKYGLKIDLEKRVEDLSVGMEQKIEILKVLYRNADIIIFDEPTAVLAPSEVDDFINILKV 186
Query: 185 LKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEI 244
L + G TVI ITHK+KE++ I + T++R G+VV TV +++ +++L ++M+ ++V +
Sbjct: 187 LAQEGHTVILITHKIKEIRSIAKKCTIMRLGKVVKTVNIADIDDKDLTKLMIGKEVALRS 246
Query: 245 SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAG 304
SK K IL++++L VKD+RG+ VK V+ +LR GEILGI+G++G+GQ +L +A+ G
Sbjct: 247 SKIKFENHFNILEIKNLSVKDERGVLKVKDVNLDLRNGEILGISGIEGSGQEDLVDAILG 306
Query: 305 IRIPEKGKIELLG-----KDVTKLPAHERYKSGLAYVP-DSRRVGLVLDMNVVENVVLTN 358
++ KG I + + L +R + +P D ++ GL+L+ NV++N+ L +
Sbjct: 307 LKSIFKGDILKKNSSGNLESLKGLTIKQRIDKKIGNIPSDRQKHGLILEFNVMQNIGLKS 366
Query: 359 LS-------RVLH-----------------------KGRISWDK--ANEMTNEVVEKFEV 386
+ +H K + +D +++N++V F++
Sbjct: 367 FDNPDYLRLKTIHLKSNFDLKFNFFNFIKRQFNKFKKQFVGFDLNILRKLSNQLVSHFDI 426
Query: 387 LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE 446
+ +KHLSGGNQQKV+V REI EP +++ +PT+GLD+GA E I K +++ RD
Sbjct: 427 RPRDILSKVKHLSGGNQQKVIVAREISLEPDILLAIQPTRGLDVGAVENIYKRIIEQRDA 486
Query: 447 RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGGVN 497
+ +LL+S +LDE++ + DR+AV++ G+I+ I + F ++ +G +M G++
Sbjct: 487 GRSVLLVSLELDELVNVCDRIAVMHGGRIVGI-LEDNFDIDVIGKMMIGLS 536
>dbj|BAB07449.1| (AP001519) ribose ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 499
Score = 342 bits (867), Expect = 7e-93
Identities = 187/490 (38%), Positives = 303/490 (61%), Gaps = 10/490 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VEM+GI K + G L+ V+ +E+GEIH L+GENGAGKSTLM+IL G + G +K+
Sbjct: 3 VEMTGIHKSF-SGNPVLKDVSFTLEKGEIHALMGENGAGKSTLMKILTGIYERDSGTVKI 61
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM---LSINPGIKISDVEKLA 120
G+EV + P +A +G+A+++Q ++P TV ENL++ IK ++ +LA
Sbjct: 62 KGREVHYKHPKEAEADGLAVIHQELNILPELTVAENLFVGKERTYGKTGWIKSKEMNRLA 121
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+EK+ E+G +V E +L VG QQ +EI KALM NA I+I+DEPT+ LT E+ LF
Sbjct: 122 EEKLAELGLKVKGTERAGNLSVGKQQLIEIAKALMTNADIIIMDEPTAALTDREIDTLFA 181
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
T+R L+++G+T ++I+H+++E+ + R+TVLR GE VGT +E S E+ +MMV R +
Sbjct: 182 TVRELQKKGVTFVYISHRMEEIFSLCQRITVLRDGEYVGTKVIAETSFDEIVKMMVGRAL 241
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
+ TPG+ L+++ L + + VS +R GEILGI+G+ G G+ EL E
Sbjct: 242 GNRFPEHTLTPGDVKLEIKHLTRAGE-----FENVSLSVRAGEILGISGLMGAGRSELVE 296
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNL 359
+ G R + G++ + GK + G+ +V + R+ GL++D ++ +N+ LTNL
Sbjct: 297 TIFGYRKADSGEVWIDGKQAAIKGPDQAIAQGIGFVSEDRKSKGLIVDFSIRDNISLTNL 356
Query: 360 SRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVI 419
SR+ IS +K + E+ +K V S K LSGGNQQK+++ + + EPK++
Sbjct: 357 SRISTSSWISSEKERSLYEELAKKLHVKASGPSQQAKSLSGGNQQKIVIAKWLGIEPKIL 416
Query: 420 VVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
++ EPT+G+D+GA + I + +L + I+++S++L E++ LS RVAV++EGK+M I
Sbjct: 417 ILDEPTRGVDVGAKKEIYTIMNELAKQGVAIIMVSSELPEVIGLSTRVAVMFEGKLMHIL 476
Query: 480 KTEEFTLEKL 489
+ +E + E +
Sbjct: 477 ERDELSEETI 486
Score = 82.7 bits (201), Expect = 8e-15
Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 7/234 (2%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K G +K VSF L +GEI + G G G+ L + L GI + G +++ G++V
Sbjct: 10 KSFSGNPVLKDVSFTLEKGEIHALMGENGAGKSTLMKILTGIYERDSGTVKIKGREVHYK 69
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
E GLA + + + ++ ++ V EN+ + + G+ W K+ EM EK
Sbjct: 70 HPKEAEADGLAVI--HQELNILPELTVAENLFV---GKERTYGKTGWIKSKEMNRLAEEK 124
Query: 384 FEVLLSSTKAPIK--HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLL 441
L K + +LS G QQ + + + ++ +I++ EPT L + + T+
Sbjct: 125 LAELGLKVKGTERAGNLSVGKQQLIEIAKALMTNADIIIMDEPTAALTDREIDTLFATVR 184
Query: 442 KLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+L+ + + IS ++EI L R+ V+ +G+ + E + +++ +M G
Sbjct: 185 ELQKKGVTFVYISHRMEEIFSLCQRITVLRDGEYVGTKVIAETSFDEIVKMMVG 238
>pir||B83629 probable ATP-binding component of ABC transporter PA0136 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9945965|gb|AAG03526.1|AE004451_7 (AE004451) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 523
Score = 339 bits (861), Expect = 3e-92
Identities = 208/502 (41%), Positives = 301/502 (59%), Gaps = 17/502 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+ GI K YP G +A ++L ++ GEIH LLGENGAGKSTLM+I+YG +P GEI+
Sbjct: 12 LELRGISKRYP-GCLANDRIDLCIDAGEIHALLGENGAGKSTLMKIIYGVTRPDAGEIRW 70
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G+ V P A GI MV+QHF+L T +V EN+ LA+ G + +L + +
Sbjct: 71 QGEPVQVRDPARARALGIGMVFQHFSLFETLSVAENIALAL-----GAEAGSPRRL-EAR 124
Query: 124 MREVG--FEVPLN--EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+REV + +PL +V L +G +QRVEI++ LM + ++LILDEPTSVLTP E ++LF
Sbjct: 125 IREVSQRYGMPLEPRRLVHGLSIGERQRVEIVRCLMQDIRLLILDEPTSVLTPREAEDLF 184
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
TLR L E G +V+FI+HKL EV+ + R TVLR G V G ++ S+ ELAR+MV
Sbjct: 185 VTLRRLAEEGCSVLFISHKLAEVRALCQRATVLRGGRVAGQCVPAQCSDLELARLMVGDA 244
Query: 240 VVMEISKGKSTPGNTILKVEDL-WVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQREL 298
+ K T G L+V DL W D + G+ E+R GEILGIAGV GNGQ EL
Sbjct: 245 EGLAAEYPKVTGGAPFLQVRDLHWRNPDPFGVSFAGLDLEVRSGEILGIAGVAGNGQDEL 304
Query: 299 AEALAG-IRIP--EKGKIELLGKDVTKLPAHERYKSGLAYVPDSR-RVGLVLDMNVVENV 354
L+G +R+P + +I L G L R ++G A+VP R G V +M++ +N
Sbjct: 305 LALLSGEVRLPRAQAERIRLGGCAGAHLAPDARRRAGQAFVPAERLGHGAVPEMSLADNA 364
Query: 355 VLTNLSR-VLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREII 413
+LT + ++ +G + K + E++ +F V AP + LSGGN QK ++GREI+
Sbjct: 365 LLTAFQQGLVKRGLVRRRKVLALAEEIIRRFAVKAPGAGAPARSLSGGNLQKFILGREIL 424
Query: 414 REPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEG 473
+ P+++V + PT G+D+GA I + L+ LRD IL++S DLDE+ LSDR+A + G
Sbjct: 425 QAPRLLVAAHPTWGVDVGAAALIHRALIALRDAGTAILVVSEDLDELFLLSDRIAALCSG 484
Query: 474 KIMSIGKTEEFTLEKLGLLMGG 495
++ T + +K+G M G
Sbjct: 485 RLCPAVATASASPQKVGGWMAG 506
>sp|P36947|RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >gi|7445938|pir||H69689
ribose ABC transporter (ATP-binding protein) rbsA -
Bacillus subtilis >gi|1894759|emb|CAB07463.1| (Z92953)
ATP-binding transport protein [Bacillus subtilis]
>gi|2636119|emb|CAB15611.1| (Z99122) ribose ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 493
Score = 326 bits (828), Expect = 3e-88
Identities = 180/495 (36%), Positives = 300/495 (60%), Gaps = 9/495 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM I K + V L GV+ ++ GE+H L+GENGAGKSTLM IL G K KG+I +
Sbjct: 3 IEMKDIHKTFGKNQV-LSGVSFQLMPGEVHALMGENGAGKSTLMNILTGLHKADKGQISI 61
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM-LSINPGI-KISDVEKLAK 121
G E F+ P +A + GIA ++Q + P TVLENL++ +S G+ + ++ LAK
Sbjct: 62 NGNETYFSNPKEAEQHGIAFIHQELNIWPEMTVLENLFIGKEISSKLGVLQTRKMKALAK 121
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E+ ++ + L++ + VG QQ +EI KALM NA+++I+DEPT+ LT E+ +LF+
Sbjct: 122 EQFDKLSVSLSLDQEAGECSVGQQQMIEIAKALMTNAEVIIMDEPTAALTEREISKLFEV 181
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+ LK+ G+++++I+H+++E+ I DR+T++R G+ V T SE E+ + MV R++
Sbjct: 182 ITALKKNGVSIVYISHRMEEIFAICDRITIMRDGKTVDTTNISETDFDEVVKKMVGRELT 241
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
K + G+ + +V++ VK + + VSF +R GEI+G++G+ G G+ E+ A
Sbjct: 242 ERYPKRTPSLGDKVFEVKNASVK-----GSFEDVSFYVRSGEIVGVSGLMGAGRTEMMRA 296
Query: 302 LAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNLS 360
L G+ + G+I + GK E K GL ++ ++R+ GL+LD ++ EN+ L NLS
Sbjct: 297 LFGVDRLDTGEIWIAGKKTAIKNPQEAVKKGLGFITENRKDEGLLLDTSIRENIALPNLS 356
Query: 361 RVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
KG I + E + ++++ + +S + +HLSGGNQQKV++ + I PKV++
Sbjct: 357 SFSPKGLIDHKREAEFVDLLIKRLTIKTASPETHARHLSGGNQQKVVIAKWIGIGPKVLI 416
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+ EPT+G+D+GA I + +L + I+++S++L EIL +SDR+ V++EG+I
Sbjct: 417 LDEPTRGVDVGAKREIYTLMNELTERGVAIIMVSSELPEILGMSDRIIVVHEGRISGEIH 476
Query: 481 TEEFTLEKLGLLMGG 495
E T E++ L G
Sbjct: 477 AREATQERIMTLATG 491
>pir||C82944 methylgalactoside permease ATP-binding protein UU015 [imported] -
Ureaplasma urealyticum
>gi|6898960|gb|AAF30420.1|AE002101_3 (AE002101)
methylgalactoside permease ATP-binding protein
[Ureaplasma urealyticum]
Length = 535
Score = 323 bits (818), Expect = 4e-87
Identities = 196/524 (37%), Positives = 310/524 (58%), Gaps = 33/524 (6%)
Query: 3 AVEMSGIVKVYPDG-VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
A+EM I K + +G V+A + VNL V++ EIH ++GENGAGKSTLM IL+G K G I
Sbjct: 11 AIEMHEITKTFLNGTVIANKDVNLFVKKNEIHAIIGENGAGKSTLMSILFGIYKQDSGSI 70
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
K+ G+ V+F+ DA + GI MV+QHF L+ T +VL+N+ L + I + +K+ K
Sbjct: 71 KINGRIVNFSSAKDASKTGIGMVHQHFKLIDTLSVLDNVILGSEGATQ-LGIINRKKITK 129
Query: 122 EK---MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
E ++E G + L + + VG QQ+ EI+K L + ILI DEPT+VL+ E++
Sbjct: 130 ELKKIIQEYGLNINLKSKISKITVGQQQKTEILKLLYRDIDILIFDEPTAVLSEDEIQAF 189
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQR 238
+ L++ K G T+I ITHKL E+KE+ D TV+RRG + + + + E+A +MV R
Sbjct: 190 LQMLKDFKAAGKTIIIITHKLNEIKEVADSATVIRRGHYIDSFDVKQKTIAEMAELMVGR 249
Query: 239 DVVMEISKGKSTPGNTILKVEDLWVK------------------DDRGLDAVKG---VSF 277
+V + T + +V++L ++ DD L + K ++F
Sbjct: 250 KLVEVKNIDPITSNEKVFEVQNLDIQSIVKKQKDIVKVKSSPKGDDVSLLSTKNNNFINF 309
Query: 278 ELREGEILGIAGVQGNGQRELAEALAGIRIPEK-GKIELLGKDVTKLPAHERYKSGLAYV 336
+R+GEI IAGV+GNGQ ELA+ ++G+ K KI L +++ +RY+ GL++V
Sbjct: 310 SIRKGEIFAIAGVEGNGQSELAQIISGLLKGNKEAKIMLDNQEIEHASIRKRYQLGLSHV 369
Query: 337 PDSR-RVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNE---VVEKFEVLLSST- 391
P+ R + GLVLD + N +L + + + + NE++ +++K++V ++
Sbjct: 370 PEDRHKHGLVLDDTIAMNAILQQVDDKPYSN-LGFFNNNEISKHAINIIKKYDVRGTTRG 428
Query: 392 KAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGIL 451
+ + LSGGNQQK+++GRE R K+I++ +PT+GLD+GA EFI + L+ + + IL
Sbjct: 429 TSDARGLSGGNQQKLIIGREFERSHKLILLVQPTRGLDLGAIEFIHEQTLEEKRKGNAIL 488
Query: 452 LISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
LIS +LDEIL L+D +AVI+ G +S+G T +K+G LM G
Sbjct: 489 LISYELDEILSLADTIAVIHNGYFISVGDRFSMTRQKIGELMAG 532
>emb|CAB43719.1| (AJ132423) P59 [Mycoplasma agalactiae]
Length = 534
Score = 321 bits (813), Expect = 1e-86
Identities = 203/520 (39%), Positives = 302/520 (58%), Gaps = 27/520 (5%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AVE + K + G+ A V KV++G IH L+GENGAGKSTL IL+G +PT+G +K
Sbjct: 6 AVEFEHVTKDFV-GIRANDDVTFKVKKGSIHALIGENGAGKSTLTSILFGLYEPTEGSVK 64
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM-LSINPGIKISDVEKLAK 121
+ GK V P A GI MV+QHF LV +T L+N+ + + N + D+ KLAK
Sbjct: 65 INGKSVIVKNPNQANEIGIGMVHQHFKLVAAYTNLQNVIMGSEFTYNYSMGTLDL-KLAK 123
Query: 122 EKMREV----GFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
K++ + LN+ + QQ+VEI+K L +A+ILI DEPT+VLT E++
Sbjct: 124 AKIKSIQELYDLHFNLNQKTSKATMATQQKVEIMKMLYRDAEILIFDEPTAVLTDQEIQG 183
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
L KT++ KE G T+IFI+HKL EVK++ D TVLR+G+V+GT S+ S +LA MV
Sbjct: 184 LLKTMQVFKENGKTIIFISHKLNEVKQVADEATVLRKGKVIGTYDVSKTSIPQLAEAMVG 243
Query: 238 RDVV--MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQ 295
+ VV + S ++ E++ K R ++K VSF++ GEIL IAGV+GNGQ
Sbjct: 244 QKVVETKNTALFDSYDKPELISFENVSTKKTRDSVSLKDVSFKVHPGEILAIAGVEGNGQ 303
Query: 296 RELAEALAGIRIPEKGKIELLGKD-------------VTKLPAHERYKSG-LAYVP-DSR 340
L LAG+ P G+I++ D +T ++ ++ + VP D
Sbjct: 304 ETLEYVLAGLVKPTHGEIKIKNPDFDSSNPKSINEFNITNWSVDKKNRAAKINIVPGDRH 363
Query: 341 RVGLVLDMNVVENVVLTNLSRVLHK--GRISWDKANEMTNEVVEKFEVL-LSSTKAPIKH 397
+ GLVLD ++ +N +L L+ + G I +K E++ VV F+V + + +
Sbjct: 364 KHGLVLDFSIRDNSILRLLNDKTYAPFGFIKANKKEELSQNVVANFDVRGTNHGNSLARS 423
Query: 398 LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDL 457
LSGGNQQK +VGRE+ + ++V+ +PT+GLD+GA + I K +L + K ILLIS +L
Sbjct: 424 LSGGNQQKAIVGREMSTDHNLLVIVQPTRGLDVGAIDLIHKKILLEKQAGKAILLISYEL 483
Query: 458 DEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGGVN 497
DEIL L+D +AVI +G+I+ + +F ++GLLM N
Sbjct: 484 DEILALADTIAVINDGRILDLKPAAQFNRTEIGLLMAASN 523
>dbj|BAB06041.1| (AP001515) sugar ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 522
Score = 316 bits (801), Expect = 4e-85
Identities = 170/490 (34%), Positives = 296/490 (59%), Gaps = 10/490 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM I K +P GV AL V LKV +G +H L+GENGAGKSTLM+IL G KP +G+I
Sbjct: 7 LEMVDITKEFP-GVKALDRVQLKVRKGSVHALMGENGAGKSTLMKILIGMYKPNEGKIIF 65
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL---A 120
G+EV+FN DA+ +GI+M++Q + +P TV EN++L + D +KL
Sbjct: 66 DGEEVTFNSINDALDKGISMIHQELSPIPEMTVAENIFLGREPTFGKSGLVDNKKLIEMT 125
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+ + + + + + +L + Q +EI KA+ ++K++I+DEPTS +T EV +LFK
Sbjct: 126 RNLLESLEINIDPRKKMGELSIANTQMIEIAKAISFHSKLVIMDEPTSAITEKEVAQLFK 185
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+ +LK++G+ +I+ITHK+ E+ EI D ++V R G+ +GT ++ +L +MMV R++
Sbjct: 186 MIESLKKKGVGIIYITHKMSELDEIADDISVFRDGKYIGTDTAKNLTRDDLIKMMVGREL 245
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
K + G IL V+ L +D + VSFE+R+GEI+G AG+ G+G+ E+ E
Sbjct: 246 NQIFDKPEPKLGEVILSVKSLTKQD-----YFEDVSFEVRKGEIVGFAGLMGSGRTEVLE 300
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLTNL 359
+ G++ E G+I + G+ + K+ + ++ + R++ GL L ++V EN++ N+
Sbjct: 301 TIFGVKEAESGEIFVNGQKARIKSPQDAVKNNMGFLTEDRKLTGLFLPLSVRENMITVNI 360
Query: 360 SRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVI 419
+ ++ G ++ + + + +K + S + +++LSGGNQQKV++ R +++ P ++
Sbjct: 361 DKYINMGWLNGKRVKKDCEQQKQKLYIKTPSIEQIVENLSGGNQQKVLLARWLLKNPDIL 420
Query: 420 VVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
+ EPT+G+D+GA + +L + K I+++S+++ EIL L DR+ V++EGK+
Sbjct: 421 FLDEPTRGIDVGAKSEFYNLIFELASQGKAIVVVSSEMAEILGLCDRILVMHEGKVTGEL 480
Query: 480 KTEEFTLEKL 489
EE EK+
Sbjct: 481 TREEANQEKI 490
Score = 85.0 bits (207), Expect = 2e-15
Identities = 58/241 (24%), Positives = 118/241 (48%), Gaps = 4/241 (1%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+L++ D+ K+ G+ A+ V ++R+G + + G G G+ L + L G+ P +GKI
Sbjct: 6 LLEMVDI-TKEFPGVKALDRVQLKVRKGSVHALMGENGAGKSTLMKILIGMYKPNEGKII 64
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
G++VT ++ G++ + + + + +M V EN+ L G + K
Sbjct: 65 FDGEEVTFNSINDALDKGISMI--HQELSPIPEMTVAENIFLGREPTFGKSGLVDNKKLI 122
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
EMT ++E E+ + K + LS N Q + + + I K++++ EPT +
Sbjct: 123 EMTRNLLESLEINIDPRKK-MGELSIANTQMIEIAKAISFHSKLVIMDEPTSAITEKEVA 181
Query: 435 FIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMG 494
+ K + L+ + GI+ I+ + E+ +++D ++V +GK + + T + L +M
Sbjct: 182 QLFKMIESLKKKGVGIIYITHKMSELDEIADDISVFRDGKYIGTDTAKNLTRDDLIKMMV 241
Query: 495 G 495
G
Sbjct: 242 G 242
>pir||B72417 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980606|gb|AAD35209.1|AE001697_9
(AE001697) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 520
Score = 314 bits (795), Expect = 2e-84
Identities = 180/487 (36%), Positives = 294/487 (59%), Gaps = 15/487 (3%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M ++ GIVK +P GVVA+ V+ +V E EI L+GENGAGKSTL++IL G +KP GE
Sbjct: 12 MEILKAKGIVKRFP-GVVAVDNVDFEVYENEIVSLIGENGAGKSTLIKILTGVLKPDAGE 70
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSI-------NPGIKI 113
I V G+ V F+ P DA ++GI++++Q L TV EN++LA ++ + +
Sbjct: 71 ILVNGERVEFHSPVDAFKKGISVIHQELNLCDNMTVAENIFLAYEAVRGQKRTLSSRVDE 130
Query: 114 SDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPI 173
+ + +KE + +G + + +V +L +Q VEI KAL+ +I+ +DEPTS LT
Sbjct: 131 NYMYTRSKELLDLIGAKFSPDALVRNLTTAQRQMVEICKALVKEPRIIFMDEPTSSLTVE 190
Query: 174 EVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
E + LF+ + LK RGI+V+F++H+L EV I+DR+ V+R G+ +G +K E + +
Sbjct: 191 ETERLFEIIEMLKSRGISVVFVSHRLDEVMRISDRIVVMRDGKRIGELKKGEFDVDTIIK 250
Query: 234 MMVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGN 293
MMV R+V ++ PG L+V +L K D VK VSFE+R+GE+LG AG+ G
Sbjct: 251 MMVGREVEFFPHGIETRPGEIALEVRNLKWK-----DKVKNVSFEVRKGEVLGFAGLVGA 305
Query: 294 GQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVE 352
G+ E + G+ E G I + G+ V + K G+ +P+ R++ GLVL M V +
Sbjct: 306 GRTETMLLVFGVNQKESGDIYVNGRKVEIKNPEDAIKMGIGLIPEDRKLQGLVLRMTVKD 365
Query: 353 NVVLTNLSRVLHKGRISWD-KANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGRE 411
N+VL +L ++ G + + K E++ + V++ + S ++LSGGNQQKV++ +
Sbjct: 366 NIVLPSLKKISRWGLVLDERKEEEISEDYVKRLSIKTPSIYQITENLSGGNQQKVVLAKW 425
Query: 412 IIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIY 471
+ +++ EPT+G+D+GA I + + +L + K +++IS++L EIL LSDR+ V++
Sbjct: 426 LATNADILIFDEPTRGIDVGAKAEIHRMIRELAAQGKAVIMISSELPEILNLSDRIVVMW 485
Query: 472 EGKIMSI 478
EG+I ++
Sbjct: 486 EGEITAV 492
Score = 102 bits (251), Expect = 1e-20
Identities = 67/222 (30%), Positives = 122/222 (54%), Gaps = 10/222 (4%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
++ V+ +V +GE+ G G GAG++ M +++G + G+I V G++V P DAI+
Sbjct: 284 VKNVSFEVRKGEVLGFAGLVGAGRTETMLLVFGVNQKESGDIYVNGRKVEIKNPEDAIKM 343
Query: 80 GIAMVYQHFTL---VPTFTVLENLYLAMLS--INPGIKISD--VEKLAKEKMREVGFEVP 132
GI ++ + L V TV +N+ L L G+ + + E+++++ ++ + + P
Sbjct: 344 GIGLIPEDRKLQGLVLRMTVKDNIVLPSLKKISRWGLVLDERKEEEISEDYVKRLSIKTP 403
Query: 133 -LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGIT 191
+ +I E+L G QQ+V + K L NA ILI DEPT + E+ + +R L +G
Sbjct: 404 SIYQITENLSGGNQQKVVLAKWLATNADILIFDEPTRGIDVGAKAEIHRMIRELAAQGKA 463
Query: 192 VIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSE--VSEREL 231
VI I+ +L E+ ++DR+ V+ GE+ + E V++ E+
Sbjct: 464 VIMISSELPEILNLSDRIVVMWEGEITAVLDNREKRVTQEEI 505
Score = 97.9 bits (240), Expect = 2e-19
Identities = 68/249 (27%), Positives = 131/249 (52%), Gaps = 16/249 (6%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
ILK + + VK G+ AV V FE+ E EI+ + G G G+ L + L G+ P+ G+I
Sbjct: 14 ILKAKGI-VKRFPGVVAVDNVDFEVYENEIVSLIGENGAGKSTLIKILTGVLKPDAGEIL 72
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRIS----- 369
+ G+ V + +K G++ + + + L +M V EN+ L + K +S
Sbjct: 73 VNGERVEFHSPVDAFKKGISVI--HQELNLCDNMTVAENIFLAYEAVRGQKRTLSSRVDE 130
Query: 370 ---WDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQ 426
+ ++ E+ + + KF S A +++L+ +Q V + + +++EP++I + EPT
Sbjct: 131 NYMYTRSKELLDLIGAKF-----SPDALVRNLTTAQRQMVEICKALVKEPRIIFMDEPTS 185
Query: 427 GLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTL 486
L + TE + + + L+ ++ +S LDE++++SDR+ V+ +GK + K EF +
Sbjct: 186 SLTVEETERLFEIIEMLKSRGISVVFVSHRLDEVMRISDRIVVMRDGKRIGELKKGEFDV 245
Query: 487 EKLGLLMGG 495
+ + +M G
Sbjct: 246 DTIIKMMVG 254
>sp|P75516|MGLA_MYCPN GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA HOMOLOG
>gi|2146032|pir||S73901 ABC transporter yjcW homolog -
Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674275|gb|AAB96223.1| (AE000056) sugar
(ribose/galactose) ABC transporter ATP-binding subunit
[Mycoplasma pneumoniae]
Length = 572
Score = 311 bits (789), Expect = 1e-83
Identities = 199/569 (34%), Positives = 307/569 (52%), Gaps = 81/569 (14%)
Query: 3 AVEMSGIVKVYPDG-VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
A M I K + +G V A VNL V E +H LLGENGAGKSTL IL+G +P G+I
Sbjct: 5 AFRMENICKSFDNGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKI 64
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLS------INPGIKISD 115
+ +EV F DA++ I MV+QHF LV +TVL+N+ L S N +K+
Sbjct: 65 FIGEEEVHFKSSKDAVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPL 124
Query: 116 VEKLAKEK-----MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
+ + A E M V L++ V L VG QQRVEI+K L ++ ILI DEPT+VL
Sbjct: 125 LHRKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVL 184
Query: 171 TPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
+ E+K ++N K+ G T++ I+HKL E+KE+ + T+LR+G VGT + + S E
Sbjct: 185 SDQEIKSFLNIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSVGTFQIKDTSIDE 244
Query: 231 LARMMVQRDVVMEISKGKST-PGNTILKVED----------------------------- 260
+AR+M+ +++ + + T G +LKVE+
Sbjct: 245 MARLMMGKELKETKNNTQFTAKGEPVLKVENLHLYLNQNWFYKLIARWNQKRINQLQKQG 304
Query: 261 -----LWVKD-DRGLDAV-----------------------KGVSFELREGEILGIAGVQ 291
LW+K GL A+ KG+SFE+ +GEI IAGV+
Sbjct: 305 KPAKTLWLKSWLEGLAAIEKTPRFIRGIVNNLGFGSQQVFDKGISFEIHKGEIFAIAGVE 364
Query: 292 GNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYV-PDSRRVGLVLDMNV 350
GNGQ +L + + G+ K+ G D+++ +R +G+ +V D + GL+LD V
Sbjct: 365 GNGQNQLIDLICGLEKAAPKKVFFNGFDISRYSIRKRINAGIGFVLEDRHKYGLILDQTV 424
Query: 351 VENVVLTNLSRVLHKGRISWDKANEM-----TNEVVEKFEVL-LSSTKAPIKHLSGGNQQ 404
N V + R K SW+ N+M TN++V+KF+V A ++ LSGGNQQ
Sbjct: 425 RFNAVNNQIDR---KQFSSWNFLNQMQIAVYTNQIVDKFDVRGAVQGTAIVRLLSGGNQQ 481
Query: 405 KVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLS 464
K+++GRE+ ++ +++V ++ T+GLD+GA FI + +L + + ILL+S +LDEIL ++
Sbjct: 482 KLIIGRELTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNNAILLVSYELDEILAIA 541
Query: 465 DRVAVIYEGKIMSIGKTEEFTLEKLGLLM 493
D + VI +G ++ + K + T E++G L+
Sbjct: 542 DTIGVINKGNLLEVNKRDVMTRERIGKLI 570
>sp|P44884|MGLA_HAEIN GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA
>gi|1075019|pir||H64096 probable ATP-binding transport
protein mglA - Haemophilus influenzae (strain Rd KW20)
>gi|1573836|gb|AAC22482.1| (U32764) galactoside ABC
transporter, ATP-binding protein (mglA) [Haemophilus
influenzae Rd]
Length = 506
Score = 311 bits (789), Expect = 1e-83
Identities = 179/487 (36%), Positives = 293/487 (59%), Gaps = 7/487 (1%)
Query: 6 MSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG 65
M+ + K +P GV AL NL V +H L+GENGAGKSTL++ L+G +GEI G
Sbjct: 16 MTNVCKSFP-GVKALDNANLTVRSHSVHALMGENGAGKSTLLKCLFGIYAKDEGEILFLG 74
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSIN-PGIKISDVEKLAKEKM 124
+ V+F +A+ GI+MV+Q LV +V++NL+L + P + + + + K
Sbjct: 75 EPVNFKTSKEALENGISMVHQELNLVRQTSVMDNLWLGRYPLKGPFVDHAKMYRDTKAIF 134
Query: 125 REVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRN 184
E+ +V E V L V Q +EI KA NAKI+I+DEPTS L+ EV+ LFK +
Sbjct: 135 DELDIDVDPKEKVAKLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLSEKEVEHLFKIIDK 194
Query: 185 LKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEI 244
LK+RG +I+I+HK+ E+ +I D +T+LR G+ + TV E + ++ MMV R++
Sbjct: 195 LKQRGCGIIYISHKMDEIFKICDEITILRDGKWINTVNVKESTMEQIVGMMVGRELTQRF 254
Query: 245 SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAG 304
+ + P IL+VE+L K+ +++ VSFELR+GEILGIAG+ G + ++ EA+ G
Sbjct: 255 PEKTNVPKEVILQVENLTAKNQ---PSIQDVSFELRKGEILGIAGLVGAKRTDIVEAIFG 311
Query: 305 IRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNLSRVL 363
+R +G I+L GK V A E +G A V + RR G+ ++++ N +++N+ L
Sbjct: 312 VRELIEGTIKLHGKTVKNHTALEAINNGFALVTEERRSTGIYSNLSIEFNSLISNMKSYL 371
Query: 364 HKGR-ISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVS 422
+ +S K T V++ V S + I LSGGNQQKV++GR ++ +P+++++
Sbjct: 372 TPWKLLSTKKMKSDTQWVIDSMNVKTPSHRTTIGSLSGGNQQKVIIGRWLLTQPEILMLD 431
Query: 423 EPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
EPT+G+DIGA I + + +L + KGI++IS+++ E+L ++DR+ V+ GK+ I ++
Sbjct: 432 EPTRGIDIGAKFEIYQLIQELAKKDKGIIMISSEMPELLGVTDRILVMSNGKLAGIVESA 491
Query: 483 EFTLEKL 489
+ + E++
Sbjct: 492 KTSQEEI 498
Score = 80.4 bits (195), Expect = 4e-14
Identities = 56/229 (24%), Positives = 114/229 (49%), Gaps = 8/229 (3%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G+ A+ + +R + + G G G+ L + L GI ++G+I LG+ V + E
Sbjct: 25 GVKALDNANLTVRSHSVHALMGENGAGKSTLLKCLFGIYAKDEGEILFLGEPVNFKTSKE 84
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR-ISWDKANEMTNEVVEKFEV 386
++G++ V + + LV +V++N+ L R KG + K T + ++ ++
Sbjct: 85 ALENGISMV--HQELNLVRQTSVMDNLWL---GRYPLKGPFVDHAKMYRDTKAIFDELDI 139
Query: 387 LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE 446
+ K + LS Q + + + K++++ EPT L E + K + KL+
Sbjct: 140 DVDP-KEKVAKLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLSEKEVEHLFKIIDKLKQR 198
Query: 447 RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL-GLLMG 494
GI+ IS +DEI ++ D + ++ +GK ++ +E T+E++ G+++G
Sbjct: 199 GCGIIYISHKMDEIFKICDEITILRDGKWINTVNVKESTMEQIVGMMVG 247
>emb|CAB66285.1| (AL136519) ABC transporter protein, ATP binding component.
[Streptomyces coelicolor A3(2)]
Length = 517
Score = 310 bits (786), Expect = 2e-83
Identities = 185/484 (38%), Positives = 281/484 (57%), Gaps = 9/484 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ + GI K +P GVVAL V+ + GE+H LLGENGAGKSTL+++L G P G I
Sbjct: 10 LRIEGIRKTFP-GVVALDSVDFDLRRGEVHVLLGENGAGKSTLIKMLSGAYTPDAGRILA 68
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG-IKISDVEKLAKE 122
G+EV +G D+ R GIA +YQ F LVP TV EN++L G I ++ A+
Sbjct: 69 GGEEVRIHGAQDSERLGIATIYQEFNLVPDLTVAENIFLGRQPRRLGMIDRKRMDADAEV 128
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
++ VG V V +L + Q VEI KAL L+A++LI+DEPT+VLT EV +LF +
Sbjct: 129 LLKRVGVNVSPRARVRELGIARLQMVEIAKALSLDARVLIMDEPTAVLTSEEVDKLFAIV 188
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVM 242
R L+E G+ ++FITH L+E+ + DRVTV+R G VG V S E EL R+MV R +
Sbjct: 189 RRLREDGVGIVFITHHLEEIAALGDRVTVIRDGRSVGQVPAS-TPEDELVRLMVGRSIEQ 247
Query: 243 EISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEAL 302
+ + ++ G +LKVE L +D D V FE+R GE++GIAG+ G G+ E+ A+
Sbjct: 248 QYPRERTDAGEALLKVEGL-TRDGVFHD----VGFEVRAGEVVGIAGLVGAGRTEVVRAV 302
Query: 303 AGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNLSR 361
G + G + + G + + + +G+ VP+ R+ GLVLD +V EN+ L L
Sbjct: 303 FGADPYDAGTVHVAGAPLRRHDVNAAMAAGIGLVPEDRKGQGLVLDASVEENLGLVTLRS 362
Query: 362 VLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVV 421
G + + + + V ++ ++ LSGGNQQKV++G+ ++ KV+++
Sbjct: 363 TARAGLVDLKGQHTAAERIAGQLGVRMAGLGQHVRTLSGGNQQKVVIGKWLLANTKVLIL 422
Query: 422 SEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
EPT+G+D+GA I + + +L +L+IS+DL E+L +SDRV V+ +G++
Sbjct: 423 DEPTRGIDVGAKVEIYQLINELTAAGAAVLMISSDLPEVLGMSDRVVVMAQGRVAGELTA 482
Query: 482 EEFT 485
E+ T
Sbjct: 483 EQAT 486
Score = 81.9 bits (199), Expect = 1e-14
Identities = 68/229 (29%), Positives = 113/229 (48%), Gaps = 9/229 (3%)
Query: 15 DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPW 74
DGV V +V GE+ G+ G GAG++ ++R ++G G + V G + +
Sbjct: 269 DGV--FHDVGFEVRAGEVVGIAGLVGAGRTEVVRAVFGADPYDAGTVHVAGAPLRRHDVN 326
Query: 75 DAIREGIAMVYQHFT---LVPTFTVLENLYLAMLSINPGIKISDV--EKLAKEKMR-EVG 128
A+ GI +V + LV +V ENL L L + D+ + A E++ ++G
Sbjct: 327 AAMAAGIGLVPEDRKGQGLVLDASVEENLGLVTLRSTARAGLVDLKGQHTAAERIAGQLG 386
Query: 129 FEVP-LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKE 187
+ L + V L G QQ+V I K L+ N K+LILDEPT + E+++ + L
Sbjct: 387 VRMAGLGQHVRTLSGGNQQKVVIGKWLLANTKVLILDEPTRGIDVGAKVEIYQLINELTA 446
Query: 188 RGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMV 236
G V+ I+ L EV ++DRV V+ +G V G + + ++ + + V
Sbjct: 447 AGAAVLMISSDLPEVLGMSDRVVVMAQGRVAGELTAEQATQDAVMALAV 495
>pir||E72314 ribose ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981493|gb|AAD36035.1|AE001758_13
(AE001758) ribose ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 523
Score = 307 bits (777), Expect = 2e-82
Identities = 186/495 (37%), Positives = 293/495 (58%), Gaps = 16/495 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E I K +P GV+A+ V L++ +GE+ L+GENGAGKSTLM+IL G +G+I +
Sbjct: 13 LEARNITKTFP-GVIAVNNVTLQIYKGEVCALVGENGAGKSTLMKILAGVYPDYEGQIFL 71
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG--IKISDVEKLAK 121
GKEV F P +A GIA++ Q LVP + EN++L+ +N I+ + + A
Sbjct: 72 EGKEVRFRNPREAQENGIALIPQELDLVPNLSSAENIFLSREPVNEFGVIEYQKMFEQAS 131
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ ++G + VEDL QQ V I KAL L+AKI+I+DEPTS + E ++LF
Sbjct: 132 KLFSKLGVNIDPKTKVEDLSTSQQQMVAIAKALSLDAKIIIMDEPTSAIGKRETEQLFNI 191
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+R+LK G +VI+I+H+L+E+ EI DRV V+R G VG E +L R+MV R +
Sbjct: 192 IRSLKNEGKSVIYISHRLEEIFEIADRVVVMRDGRKVGEGPIEEFDHDKLVRLMVGRSID 251
Query: 242 MEISKGKSTPGNTILKVED--LWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELA 299
K ++T + I +VE LW D + L V VSF +R+GE+LGI G+ G G+ EL
Sbjct: 252 QFFIKERATITDEIFRVEGIKLWSLDRKKL-LVDDVSFYVRKGEVLGIYGLVGAGRTELL 310
Query: 300 EALAGIRIPE-KGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLT 357
EA+ G +GK+ + GK++ + K+G+ VP+ R+ GL+L M+V+ N+ L
Sbjct: 311 EAIFGAHPGRTEGKVFIGGKEIKIHSPRDAVKNGIGLVPEDRKTAGLILQMSVLHNITLP 370
Query: 358 N--LSRVLHK-GRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIR 414
+ + ++ K G I E+ +EK + S +++LSGGNQQKV++ + +
Sbjct: 371 SVVMKLIVRKFGLIDSQLEKEIVRSFIEKLNIKTPSPYQIVENLSGGNQQKVVLAKWLAI 430
Query: 415 EPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGK 474
+PKV+++ EPT+G+D+ A I K + ++ G++++S++L EIL +SDR+ V+ EG+
Sbjct: 431 KPKVLLLDEPTRGIDVNAKSEIYKLISEMAVSGMGVVMVSSELPEILAMSDRILVMSEGR 490
Query: 475 IMSIGKTEEFTLEKL 489
KT EF E++
Sbjct: 491 -----KTAEFLREEV 500
Score = 110 bits (272), Expect = 4e-23
Identities = 70/228 (30%), Positives = 124/228 (53%), Gaps = 4/228 (1%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G+ AV V+ ++ +GE+ + G G G+ L + LAG+ +G+I L GK+V E
Sbjct: 24 GVIAVNNVTLQIYKGEVCALVGENGAGKSTLMKILAGVYPDYEGQIFLEGKEVRFRNPRE 83
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
++G+A +P + + LV +++ EN+ L+ V G I + K E +++ K V
Sbjct: 84 AQENGIALIP--QELDLVPNLSSAENIFLSR-EPVNEFGVIEYQKMFEQASKLFSKLGVN 140
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+ K ++ LS QQ V + + + + K+I++ EPT + TE + + L++E
Sbjct: 141 IDP-KTKVEDLSTSQQQMVAIAKALSLDAKIIIMDEPTSAIGKRETEQLFNIIRSLKNEG 199
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
K ++ IS L+EI +++DRV V+ +G+ + G EEF +KL LM G
Sbjct: 200 KSVIYISHRLEEIFEIADRVVVMRDGRKVGEGPIEEFDHDKLVRLMVG 247
Score = 102 bits (253), Expect = 7e-21
Identities = 66/235 (28%), Positives = 127/235 (53%), Gaps = 11/235 (4%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKP-TKGEIKVFGKEVSFNGPWDAIREGI 81
V+ V +GE+ G+ G GAG++ L+ ++G T+G++ + GKE+ + P DA++ GI
Sbjct: 286 VSFYVRKGEVLGIYGLVGAGRTELLEAIFGAHPGRTEGKVFIGGKEIKIHSPRDAVKNGI 345
Query: 82 AMVYQHFT---LVPTFTVLENLYLAMLSINP-----GIKISDVEK-LAKEKMREVGFEVP 132
+V + L+ +VL N+ L + + G+ S +EK + + + ++ + P
Sbjct: 346 GLVPEDRKTAGLILQMSVLHNITLPSVVMKLIVRKFGLIDSQLEKEIVRSFIEKLNIKTP 405
Query: 133 LN-EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGIT 191
+IVE+L G QQ+V + K L + K+L+LDEPT + E++K + + G+
Sbjct: 406 SPYQIVENLSGGNQQKVVLAKWLAIKPKVLLLDEPTRGIDVNAKSEIYKLISEMAVSGMG 465
Query: 192 VIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISK 246
V+ ++ +L E+ ++DR+ V+ G EV+E +L + + R V +E ++
Sbjct: 466 VVMVSSELPEILAMSDRILVMSEGRKTAEFLREEVTEEDLLKAAIPRSVKVETTQ 520
>sp|P23199|MGLA_ECOLI GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA
>gi|7445927|pir||D64983 galactoside transport
ATP-binding protein mglA - Escherichia coli
>gi|1788472|gb|AAC75210.1| (AE000304) ATP-binding
component of methyl-galactoside transport and galactose
taxis [Escherichia coli K12]
Length = 506
Score = 301 bits (762), Expect = 1e-80
Identities = 179/491 (36%), Positives = 287/491 (57%), Gaps = 11/491 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EMSGI K +P GV AL VNLKV IH L+GENGAGKSTL++ L+G + G I
Sbjct: 14 LEMSGINKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILF 72
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
GKE+ F+ +A+ GI+MV+Q LV +V++N++L G+ + D +K+ +E
Sbjct: 73 QGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK-GMFV-DQDKMYRET 130
Query: 124 MR---EVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
E+ ++ V L V Q +EI KA NAKI+I+DEPTS LT EV LF
Sbjct: 131 KAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 190
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+R LKERG +++I+HK++E+ ++ D VTVLR G+ + T + ++ ++ MMV R +
Sbjct: 191 IIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRSL 250
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
++ PG IL+V +L +++ VSF+L +GEILGIAG+ G + ++ E
Sbjct: 251 NQRFPDKENKPGEVILEVRNL---TSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVE 307
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNL 359
L GIR G I L GK + A+E G A V + RR G+ +++ N +++N+
Sbjct: 308 TLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI 367
Query: 360 SRVLHK-GRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
+K G + + T V++ V + I LSGGNQQKV++GR ++ +P++
Sbjct: 368 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEI 427
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+++ EPT+G+D+GA I + + +L + KGI++IS+++ E+L ++DR+ V+ G + I
Sbjct: 428 LMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGI 487
Query: 479 GKTEEFTLEKL 489
T+ T ++
Sbjct: 488 VDTKTTTQNEI 498
Score = 81.9 bits (199), Expect = 1e-14
Identities = 63/253 (24%), Positives = 122/253 (47%), Gaps = 8/253 (3%)
Query: 244 ISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALA 303
+S + G +L++ + K G+ A+ V+ ++R I + G G G+ L + L
Sbjct: 2 VSSTTPSSGEYLLEMSGI-NKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF 60
Query: 304 GIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVL 363
GI + G I GK++ A E ++G++ V + + LVL +V++N+ L R
Sbjct: 61 GIYQKDSGTILFQGKEIDFHSAKEALENGISMV--HQELNLVLQRSVMDNMWL---GRYP 115
Query: 364 HKGR-ISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVS 422
KG + DK T + ++ ++ + +A + LS Q + + + K++++
Sbjct: 116 TKGMFVDQDKMYRETKAIFDELDIDIDP-RARVGTLSVSQMQMIEIAKAFSYNAKIVIMD 174
Query: 423 EPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
EPT L + + KL++ GI+ IS ++EI QL D V V+ +G+ ++
Sbjct: 175 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLA 234
Query: 483 EFTLEKLGLLMGG 495
T++K+ +M G
Sbjct: 235 GLTMDKIIAMMVG 247
Score = 81.1 bits (197), Expect = 2e-14
Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 10/225 (4%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
++R V+ + +GEI G+ G GA ++ ++ L+G + + G I + GK+++ + +AI
Sbjct: 278 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANEAIN 337
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMRE--------VGFE 130
G A+V + + L+ + +++S K + V L +M+ + +
Sbjct: 338 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYK-NKVGLLDNSRMKSDTQWVIDSMRVK 396
Query: 131 VPLNEI-VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERG 189
P + + L G QQ+V I + L+ +IL+LDEPT + E+++ + L ++G
Sbjct: 397 TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKG 456
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
+I I+ ++ E+ ITDR+ V+ G V G V T ++ E+ R+
Sbjct: 457 KGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRL 501
>pir||B37277 50K membrane-associated protein mglA - Escherichia coli
>gi|146854|gb|AAA24170.1| (M59444) galactose binding
protein [Escherichia coli]
Length = 506
Score = 299 bits (758), Expect = 4e-80
Identities = 178/491 (36%), Positives = 286/491 (57%), Gaps = 11/491 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EMSGI K +P GV AL VNLKV IH L+GENGAGKSTL++ L+G + G I
Sbjct: 14 LEMSGINKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILF 72
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
GKE+ F+ +A+ GI+MV+Q LV +V++N++L G+ + D +K+ +E
Sbjct: 73 QGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK-GMFV-DQDKMYRET 130
Query: 124 MR---EVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
E+ ++ V L V Q +EI K NAKI+I+DEPTS LT EV LF
Sbjct: 131 KAIFDELDIDIDPRARVGTLSVSQMQMIEIAKGFSYNAKIVIMDEPTSSLTEKEVNHLFT 190
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+R LKERG +++I+HK++E+ ++ D VTVLR G+ + T + ++ ++ MMV R +
Sbjct: 191 IIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRSL 250
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
++ PG IL+V +L +++ VSF+L +GEILGIAG+ G + ++ E
Sbjct: 251 NQRFPDKENKPGEVILEVRNL---TSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVE 307
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNL 359
L GIR G I L GK + A+E G A V + RR G+ +++ N +++N+
Sbjct: 308 TLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI 367
Query: 360 SRVLHK-GRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
+K G + + T V++ V + I LSGGNQQKV++GR ++ +P++
Sbjct: 368 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEI 427
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+++ EPT+G+D+GA I + + +L + KGI++IS+++ E+L ++DR+ V+ G + I
Sbjct: 428 LMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGI 487
Query: 479 GKTEEFTLEKL 489
T+ T ++
Sbjct: 488 VDTKTTTQNEI 498
Score = 81.5 bits (198), Expect = 2e-14
Identities = 63/253 (24%), Positives = 122/253 (47%), Gaps = 8/253 (3%)
Query: 244 ISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALA 303
+S + G +L++ + K G+ A+ V+ ++R I + G G G+ L + L
Sbjct: 2 VSSTTPSSGEYLLEMSGI-NKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF 60
Query: 304 GIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVL 363
GI + G I GK++ A E ++G++ V + + LVL +V++N+ L R
Sbjct: 61 GIYQKDSGTILFQGKEIDFHSAKEALENGISMV--HQELNLVLQRSVMDNMWL---GRYP 115
Query: 364 HKGR-ISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVS 422
KG + DK T + ++ ++ + +A + LS Q + + + K++++
Sbjct: 116 TKGMFVDQDKMYRETKAIFDELDIDIDP-RARVGTLSVSQMQMIEIAKGFSYNAKIVIMD 174
Query: 423 EPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
EPT L + + KL++ GI+ IS ++EI QL D V V+ +G+ ++
Sbjct: 175 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLA 234
Query: 483 EFTLEKLGLLMGG 495
T++K+ +M G
Sbjct: 235 GLTMDKIIAMMVG 247
Score = 81.1 bits (197), Expect = 2e-14
Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 10/225 (4%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
++R V+ + +GEI G+ G GA ++ ++ L+G + + G I + GK+++ + +AI
Sbjct: 278 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANEAIN 337
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMRE--------VGFE 130
G A+V + + L+ + +++S K + V L +M+ + +
Sbjct: 338 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYK-NKVGLLDNSRMKSDTQWVIDSMRVK 396
Query: 131 VPLNEI-VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERG 189
P + + L G QQ+V I + L+ +IL+LDEPT + E+++ + L ++G
Sbjct: 397 TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKG 456
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
+I I+ ++ E+ ITDR+ V+ G V G V T ++ E+ R+
Sbjct: 457 KGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRL 501
>pir||E82214 galactoside ABC transporter, ATP-binding protein VC1327 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655817|gb|AAF94485.1| (AE004212) galactoside ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 514
Score = 297 bits (753), Expect = 2e-79
Identities = 168/483 (34%), Positives = 286/483 (58%), Gaps = 7/483 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM+G+ K +P GV AL VNLKV +H L+GENGAGKSTL++ L+G + +G+I
Sbjct: 22 LEMTGVSKEFP-GVKALDKVNLKVRPHSVHALMGENGAGKSTLLKCLFGIYEKDEGDIIF 80
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISD-VEKLAKE 122
G+ V+F+ +A+ G++MV+Q V +V++N++L D + + K
Sbjct: 81 LGQHVNFSSSKEALESGVSMVHQELNQVKQCSVMDNIWLGRYPTKGFFVDHDKMYRDTKA 140
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
E+ ++ V L V Q +EI KA +AK++I+DEPTS LT EV LF +
Sbjct: 141 IFAELDIDIDPKVKVATLSVSQMQMLEIAKAFSYDAKVVIMDEPTSSLTEKEVNHLFTII 200
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVM 242
+ LKE+G V++I+HK++E+ I D +T+LR G+ V T + ++ MMV R++
Sbjct: 201 KKLKEKGCGVVYISHKMEEIFSICDEITILRDGQWVDTRPLKGLDMDKIISMMVGRELTQ 260
Query: 243 EISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEAL 302
+ + P N IL+V++L + +++ +SFELR GEILG+AG+ G+ + ++ E +
Sbjct: 261 RFPEKSNEPKNVILEVKNLTALNQ---PSIQDISFELRAGEILGVAGLVGSRRTDIVETI 317
Query: 303 AGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNLSR 361
G+R G I L G+++ AHE ++G A V + RR G+ ++++ N ++ N+
Sbjct: 318 FGVRERSAGHILLHGREMKNHDAHEAIRNGFALVTEERRSTGIYSNLDITFNSLVANVDE 377
Query: 362 V-LHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
G +S K T V++ V S + I LSGGNQQKV++GR ++ +P++++
Sbjct: 378 YKTPYGLLSDKKMKSDTQWVIDSMRVKTPSHQTHIGSLSGGNQQKVIIGRWLLTQPEILM 437
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+ EPT+G+D+GA I + +L+L + KGI++IS+++ E+L ++DR+ V+ G+ I
Sbjct: 438 LDEPTRGIDVGAKYEIYQLILELAKKDKGIIIISSEMPELLGITDRIMVMSNGRNAGIVN 497
Query: 481 TEE 483
T++
Sbjct: 498 TKQ 500
Score = 76.1 bits (184), Expect = 8e-13
Identities = 53/225 (23%), Positives = 117/225 (51%), Gaps = 10/225 (4%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
+++ ++ ++ GEI G+ G G+ ++ ++ ++G + + G I + G+E+ + +AIR
Sbjct: 286 SIQDISFELRAGEILGVAGLVGSRRTDIVETIFGVRERSAGHILLHGREMKNHDAHEAIR 345
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMRE--------VGFE 130
G A+V + ++ L+ + ++++ K + L+ +KM+ + +
Sbjct: 346 NGFALVTEERRSTGIYSNLDITFNSLVANVDEYK-TPYGLLSDKKMKSDTQWVIDSMRVK 404
Query: 131 VPLNEI-VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERG 189
P ++ + L G QQ+V I + L+ +IL+LDEPT + E+++ + L ++
Sbjct: 405 TPSHQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKYEIYQLILELAKKD 464
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
+I I+ ++ E+ ITDR+ V+ G G V T + S+ E+ +
Sbjct: 465 KGIIIISSEMPELLGITDRIMVMSNGRNAGIVNTKQTSQNEILEL 509
Score = 70.6 bits (170), Expect = 4e-11
Identities = 53/233 (22%), Positives = 111/233 (46%), Gaps = 7/233 (3%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K+ G+ A+ V+ ++R + + G G G+ L + L GI ++G I LG+ V
Sbjct: 29 KEFPGVKALDKVNLKVRPHSVHALMGENGAGKSTLLKCLFGIYEKDEGDIIFLGQHVNFS 88
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR-ISWDKANEMTNEVVE 382
+ E +SG++ V + + V +V++N+ L R KG + DK T +
Sbjct: 89 SSKEALESGVSMV--HQELNQVKQCSVMDNIWL---GRYPTKGFFVDHDKMYRDTKAIFA 143
Query: 383 KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
+ ++ + K + LS Q + + + + KV+++ EPT L + + K
Sbjct: 144 ELDIDIDP-KVKVATLSVSQMQMLEIAKAFSYDAKVVIMDEPTSSLTEKEVNHLFTIIKK 202
Query: 443 LRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
L+++ G++ IS ++EI + D + ++ +G+ + + ++K+ +M G
Sbjct: 203 LKEKGCGVVYISHKMEEIFSICDEITILRDGQWVDTRPLKGLDMDKIISMMVG 255
>sp|P44735|RBSA_HAEIN RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >gi|1074193|pir||H64072
ribose transport protein - Haemophilus influenzae
(strain Rd KW20) >gi|1573483|gb|AAC22160.1| (U32732)
D-ribose ABC transporter, ATP-binding protein (rbsA)
[Haemophilus influenzae Rd]
Length = 493
Score = 297 bits (752), Expect = 2e-79
Identities = 174/491 (35%), Positives = 276/491 (55%), Gaps = 10/491 (2%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T +++SG+ K +P GV AL L V G + L+GENGAGKSTLM++L G G I
Sbjct: 3 TLLKISGVDKSFP-GVKALNNACLSVYAGRVMALMGENGAGKSTLMKVLTGIYSKDAGTI 61
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLA--MLSINPGIKISDVEKL 119
+ + V+FNGP + GI++++Q LV T+ EN++L + I + +
Sbjct: 62 EYLNRSVNFNGPKASQEAGISIIHQELNLVGNLTIAENIFLGREFKTSWGAINWQKMHQE 121
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
A + + +G ++ +L +G QQ VEI KAL +K++I+DEPT LT E + LF
Sbjct: 122 ADKLLARLGVTHSSKQLCAELSIGEQQMVEIAKALSFESKVIIMDEPTDALTDTETEALF 181
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+R LK +++I+H+LKE+ +I D VTVLR G+ +G +E++E +L MMV R
Sbjct: 182 NVIRELKAENRGIVYISHRLKEIFQICDDVTVLRDGQFIGERVMAEITEDDLIEMMVGRR 241
Query: 240 VVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELA 299
+ + G +L V+ + G+D VSF+L GEI+G++G+ G G+ EL
Sbjct: 242 LDEQYPHLSQEKGECVLDVKHV---SGSGID---DVSFKLHAGEIVGVSGLMGAGRTELG 295
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLTN 358
+ L G GK+ L +++ + +G+ Y+ + R+ GLVL M+V EN+ LT+
Sbjct: 296 KLLYGALPKTAGKVRLKNQEIENRSPQDGLDNGIVYISEDRKGDGLVLGMSVKENMSLTS 355
Query: 359 LSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
L KG I ++ + F + + + LSGGNQQKV + R ++ P V
Sbjct: 356 LDHFSQKGGIRHQAEKMAVDDFILMFNIKTPNRDQQVGLLSGGNQQKVAIARGLMTRPNV 415
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+++ EPT+G+D+GA + I + + + + E IL+IS+D+ E+L +SDRV V+ EGKI +
Sbjct: 416 LILDEPTRGVDVGAKKEIYQLINEFKKEGLSILMISSDMPEVLGMSDRVLVMREGKISAE 475
Query: 479 GKTEEFTLEKL 489
EE T EKL
Sbjct: 476 FSREEATQEKL 486
Score = 93.2 bits (228), Expect = 6e-18
Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 5/242 (2%)
Query: 254 TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKI 313
T+LK+ + K G+ A+ + G ++ + G G G+ L + L GI + G I
Sbjct: 3 TLLKISGV-DKSFPGVKALNNACLSVYAGRVMALMGENGAGKSTLMKVLTGIYSKDAGTI 61
Query: 314 ELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKA 373
E L + V ++G++ + + + LV ++ + EN+ L + G I+W K
Sbjct: 62 EYLNRSVNFNGPKASQEAGISII--HQELNLVGNLTIAENIFLGREFKTSW-GAINWQKM 118
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
++ ++++ + V SS K LS G QQ V + + + E KVI++ EPT L T
Sbjct: 119 HQEADKLLARLGVTHSS-KQLCAELSIGEQQMVEIAKALSFESKVIIMDEPTDALTDTET 177
Query: 434 EFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLM 493
E + + +L+ E +GI+ IS L EI Q+ D V V+ +G+ + E T + L +M
Sbjct: 178 EALFNVIRELKAENRGIVYISHRLKEIFQICDDVTVLRDGQFIGERVMAEITEDDLIEMM 237
Query: 494 GG 495
G
Sbjct: 238 VG 239
>pir||A82497 ribose ABC transporter, ATP-binding protein VCA0128 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9657516|gb|AAF96042.1| (AE004354) ribose ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 500
Score = 296 bits (751), Expect = 3e-79
Identities = 174/489 (35%), Positives = 288/489 (58%), Gaps = 14/489 (2%)
Query: 6 MSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG 65
+S I K +P GV AL +L V G + L+GENGAGKSTLM++L G G I+ G
Sbjct: 8 LSQIEKAFP-GVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQG 66
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI--SDVEKLAKEK 123
+ VSF GP D+ GI++++Q L+P T+ EN++L +P +I ++ + A +
Sbjct: 67 QPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQL 126
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
+ + + ++ +L +G QQ VEI KAL +K++I+DEPT LT E + LF +
Sbjct: 127 LARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVIN 186
Query: 184 NLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVME 243
L+E+G +++I+H+LKE+ EI D +TVLR G+ +G + + +E L MMV R + +
Sbjct: 187 ELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLEEQ 246
Query: 244 ISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALA 303
+ + G+ L+V L V VSF L++GEILG++G+ G G+ EL + +
Sbjct: 247 YPRIAAQQGDISLEVIGLTG------SGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIY 300
Query: 304 GIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNLSRV 362
G E+G I L G+ V + + +G+AY+ + R+ GLVL ++V EN+ L L +
Sbjct: 301 GALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ- 359
Query: 363 LHKGRISWDKANEM--TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
L KG + A+E+ ++ + F + S + I +LSGGNQQKV + + ++ +PKV++
Sbjct: 360 LSKG-VQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+ EPT+G+D+GA + I + + + + E I+L+S+++ E+L +SDR+ V++EG+I
Sbjct: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478
Query: 481 TEEFTLEKL 489
E EKL
Sbjct: 479 ASEADQEKL 487
Score = 111 bits (274), Expect = 2e-23
Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 7/224 (3%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIREGIA 82
V+ +++GEI G+ G GAG++ LM+++YG + +G I + G+ V+ P D + GIA
Sbjct: 272 VSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIA 331
Query: 83 MVYQHFT---LVPTFTVLENLYLAMLS-INPGIKISDVEKL--AKEKMREVGFEVPLNE- 135
+ + LV +V EN+ L L ++ G++I +++ + +R + P E
Sbjct: 332 YISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQ 391
Query: 136 IVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFI 195
I+ +L G QQ+V I K LM K+LILDEPT + KE+++ + K G+++I +
Sbjct: 392 IIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILV 451
Query: 196 THKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+ ++ EV ++DR+ V+ G + G SE + +L V R+
Sbjct: 452 SSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRN 495
>sp|P04983|RBSA_ECOLI RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >gi|78831|pir||B26304
ribose transport protein rbsA - Escherichia coli
>gi|147513|gb|AAA51473.1| (M13169) high affinity ribose
transport protein [Escherichia coli]
>gi|1790190|gb|AAC76772.1| (AE000452) ATP-binding
component of D-ribose high-affinity transport system
[Escherichia coli K12]
Length = 501
Score = 295 bits (748), Expect = 6e-79
Identities = 176/491 (35%), Positives = 279/491 (55%), Gaps = 13/491 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+++ GI K +P GV AL G L V G + L+GENGAGKST+M++L G G +
Sbjct: 5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLW 63
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS--DVEKLAK 121
GKE +F GP + GI +++Q L+P T+ EN++L +N KI + A
Sbjct: 64 LGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEAD 123
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ + ++ +++V DL +G QQ VEI K L +K++I+DEPT LT E + LF+
Sbjct: 124 KLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV 183
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+R LK +G +++I+H++KE+ EI D VTV R G+ + + + ++E L MMV R +
Sbjct: 184 IRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLE 243
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
+ PG+ LKV++L V VSF LR+GEILG++G+ G G+ EL +
Sbjct: 244 DQYPHLDKAPGDIRLKVDNLCG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKV 297
Query: 302 LAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYV-PDSRRVGLVLDMNVVENVVLTNLS 360
L G G + L G +V + +G+ Y+ D +R GLVL M+V EN+ LT L
Sbjct: 298 LYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL- 356
Query: 361 RVLHKGRISWDKANEM--TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
R + S A+E ++ + F V S + I LSGGNQQKV + R ++ PKV
Sbjct: 357 RYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+++ EPT+G+D+GA + I + + + + + I+L+S+++ E+L +SDR+ V++EG +
Sbjct: 417 LILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGE 476
Query: 479 GKTEEFTLEKL 489
E+ T E L
Sbjct: 477 FTREQATQEVL 487
Score = 90.5 bits (221), Expect = 4e-17
Identities = 58/228 (25%), Positives = 112/228 (48%), Gaps = 4/228 (1%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G+ A+ G + + G ++ + G G G+ + + L GI + G + LGK+ T
Sbjct: 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKS 75
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
++G+ + + + L+ + + EN+ L V G+I W ++++ K +
Sbjct: 76 SQEAGIGII--HQELNLIPQLTIAENIFLGR-EFVNRFGKIDWKTMYAEADKLLAKLNLR 132
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S K + LS G+QQ V + + + E KVI++ EPT L TE + + + +L+ +
Sbjct: 133 FKSDKL-VGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+GI+ IS + EI ++ D V V +G+ ++ + T + L +M G
Sbjct: 192 RGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVG 239
>gb|AAA62102.1| (L10328) high affinity ribose transport protein [Escherichia coli]
Length = 501
Score = 295 bits (748), Expect = 6e-79
Identities = 176/491 (35%), Positives = 279/491 (55%), Gaps = 13/491 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+++ GI K +P GV AL G L V G + L+GENGAGKST+M++L G G +
Sbjct: 5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLW 63
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS--DVEKLAK 121
GKE +F GP + GI +++Q L+P T+ EN++L +N KI + A
Sbjct: 64 LGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEAD 123
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ + ++ +++V DL +G QQ VEI K L +K++I+DEPT LT E + LF+
Sbjct: 124 KLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV 183
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+R LK +G +++I+H++KE+ EI D VTV R G+ + + + ++E L MMV R +
Sbjct: 184 IRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLE 243
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
+ PG+ LKV++L V VSF LR+GEILG++G+ G G+ EL +
Sbjct: 244 DQYPHLDKAPGDIRLKVDNLCG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKV 297
Query: 302 LAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYV-PDSRRVGLVLDMNVVENVVLTNLS 360
L G G + L G +V + +G+ Y+ D +R GLVL M+V EN+ LT L
Sbjct: 298 LYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL- 356
Query: 361 RVLHKGRISWDKANEM--TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
R + S A+E ++ + F V S + I LSGGNQQKV + R ++ PKV
Sbjct: 357 RYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+++ EPT+G+D+GA + I + + + + + I+L+S+++ E+L +SDR+ V++EG +
Sbjct: 417 LILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGE 476
Query: 479 GKTEEFTLEKL 489
E+ T E L
Sbjct: 477 FTREQATQEVL 487
Score = 90.5 bits (221), Expect = 4e-17
Identities = 58/228 (25%), Positives = 112/228 (48%), Gaps = 4/228 (1%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G+ A+ G + + G ++ + G G G+ + + L GI + G + LGK+ T
Sbjct: 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKS 75
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
++G+ + + + L+ + + EN+ L V G+I W ++++ K +
Sbjct: 76 SQEAGIGII--HQELNLIPQLTIAENIFLGR-EFVNRFGKIDWKTMYAEADKLLAKLNLR 132
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S K + LS G+QQ V + + + E KVI++ EPT L TE + + + +L+ +
Sbjct: 133 FKSDKL-VGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+GI+ IS + EI ++ D V V +G+ ++ + T + L +M G
Sbjct: 192 RGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVG 239
>sp|P23924|MGLA_SALTY GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA
>gi|1345116|gb|AAC44149.1| (U40492) MglA [Salmonella
typhimurium]
Length = 506
Score = 295 bits (747), Expect = 8e-79
Identities = 176/491 (35%), Positives = 282/491 (56%), Gaps = 11/491 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM GI K +P GV AL VNL V IH L+GENGAGKSTL++ L+G + G I
Sbjct: 14 LEMRGINKSFP-GVKALDNVNLNVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIVF 72
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL---A 120
GKEV F+ +A+ GI+MV+Q LV +V++N++L G+ + D +K+
Sbjct: 73 QGKEVDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK-GMFV-DQDKMYQDT 130
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
K E+ ++ V L V Q +EI KA NAKI+I+DEPTS LT EV LF
Sbjct: 131 KAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 190
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+R LKERG +++I+HK++E+ ++ D +T+LR G+ + T + ++ MMV R +
Sbjct: 191 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLEGLDMDKIIAMMVGRSL 250
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
++ PG+ IL+V L +++ VSF+L +GEILGIAG+ G + ++ E
Sbjct: 251 NQRFPDKENKPGDVILEVRHL---TSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVE 307
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNL 359
L GIR G I L GK + A+E G A V + RR G+ +++ N +++N+
Sbjct: 308 TLFGIREKSSGTITLHGKKINNHTANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI 367
Query: 360 SRVLHK-GRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
+K G + + T V++ V + I LSGGNQQKV++GR ++ +P++
Sbjct: 368 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEI 427
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+++ EPT+G+D+GA I + + +L + KGI++IS+++ E+L ++DR+ V+ G + I
Sbjct: 428 LMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGI 487
Query: 479 GKTEEFTLEKL 489
T+ T ++
Sbjct: 488 VDTKTTTQNEI 498
Score = 81.9 bits (199), Expect = 1e-14
Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 7/229 (3%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G+ A+ V+ +R I + G G G+ L + L GI + G I GK+V A E
Sbjct: 25 GVKALDNVNLNVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIVFQGKEVDFHSAKE 84
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR-ISWDKANEMTNEVVEKFEV 386
++G++ V + + LVL +V++N+ L R KG + DK + T + ++ ++
Sbjct: 85 ALENGISMV--HQELNLVLQRSVMDNMWL---GRYPTKGMFVDQDKMYQDTKAIFDELDI 139
Query: 387 LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE 446
+ +A + LS Q + + + K++++ EPT L + + KL++
Sbjct: 140 DIDP-RARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER 198
Query: 447 RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
GI+ IS ++EI QL D + ++ +G+ ++ E ++K+ +M G
Sbjct: 199 GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLEGLDMDKIIAMMVG 247
Score = 80.4 bits (195), Expect = 4e-14
Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 10/225 (4%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
++R V+ + +GEI G+ G GA ++ ++ L+G + + G I + GK+++ + +AI
Sbjct: 278 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSSGTITLHGKKINNHTANEAIN 337
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMRE--------VGFE 130
G A+V + + L+ + +++S K + V L +M+ + +
Sbjct: 338 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYK-NKVGLLDNSRMKSDTQWVIDSMRVK 396
Query: 131 VPLNEI-VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERG 189
P + + L G QQ+V I + L+ +IL+LDEPT + E+++ + L ++G
Sbjct: 397 TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKG 456
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
+I I+ ++ E+ ITDR+ V+ G V G V T ++ E+ R+
Sbjct: 457 KGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRL 501
>sp|P47365|MGLA_MYCGE GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA HOMOLOG
>gi|1361723|pir||B64213 methylgalactoside permease
ATP-binding protein homolog - Mycoplasma genitalium
>gi|3844709|gb|AAC71337.1| (U39692) galactoside ABC
transporter, ATP-binding protein (mglA) [Mycoplasma
genitalium]
Length = 564
Score = 294 bits (746), Expect = 1e-78
Identities = 196/563 (34%), Positives = 302/563 (52%), Gaps = 77/563 (13%)
Query: 3 AVEMSGIVKVYPDGVVALR-GVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
A +M I K + +G + V+L V E +H +LGENGAGKSTL IL+G KP G+I
Sbjct: 5 AFKMEHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKI 64
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYL---AMLSINPGIKISDVEK 118
+ K+V+F DA++ I MV+QHF L+ +TVL+N+ L + P I E
Sbjct: 65 FIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEA 124
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
K M + G V L + V +L VG QQRVEI+K L ++ ILI DEPT+VL+ +E++
Sbjct: 125 KIKTIMEKYGIFVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNF 184
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT--VKTSEVSE-------R 229
K + N K+ G T++ I+HKL E+K++ D TVLR G+VVG+ VKT+ V + +
Sbjct: 185 LKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKVVGSFDVKTTPVDKIALLMMGK 244
Query: 230 ELARMMVQRDVVME----------------------------ISKGKSTPGNTILKVEDL 261
EL + D V + I K + N LK DL
Sbjct: 245 ELKQTKNTTDFVAKDEPVLKVQNLNLFLNKSLAYKFLVRCNNIHKAQQIKKNKPLK--DL 302
Query: 262 WV--------KDDRGLDAVKG----------------VSFELREGEILGIAGVQGNGQRE 297
W+ ++ VKG +SF + +GEI IAGV+GNGQ +
Sbjct: 303 WIISFLNKLTTSNKTPKLVKGLINKLGLSYQENTDETISFAIHKGEIFAIAGVEGNGQSQ 362
Query: 298 LAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYV-PDSRRVGLVLDMNVVENVVL 356
L + GI K+ D+++ +R +G+++V D + GL+LD V N V
Sbjct: 363 LVNLICGIEKAASNKLIFNNIDISRWSIRKRINAGISFVLEDRHKYGLILDQTVRFNTVN 422
Query: 357 TNLSRVLHKGRISWDKANEM-----TNEVVEKFEVLLSST-KAPIKHLSGGNQQKVMVGR 410
++ ++ SW+ M +N +++KF+V S+ A ++ LSGGNQQK+++GR
Sbjct: 423 NQIN---NRPFSSWNFLKPMEIALYSNTIIKKFDVRGSAEGSAVVRRLSGGNQQKLIIGR 479
Query: 411 EIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVI 470
E+ ++ ++V+++ T+GLDIGA FI + +L + K ILL+S +LDEIL L+D VAVI
Sbjct: 480 EMTKQNDLLVLAQVTRGLDIGAIAFIHENILLAKANNKAILLVSYELDEILALADTVAVI 539
Query: 471 YEGKIMSIGKTEEFTLEKLGLLM 493
+G+I+ +GK + + +G L+
Sbjct: 540 NKGRIVGMGKRDLMDRQSIGRLI 562
Score = 80.4 bits (195), Expect = 4e-14
Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 4/240 (1%)
Query: 257 KVEDLWVKDDRG-LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
K+E + D G + A VS + E + I G G G+ L L G+ P+ GKI +
Sbjct: 7 KMEHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFI 66
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
K V + + K + V + L+ + V++N++L N SR I+ +
Sbjct: 67 GEKQVNFKSSKDAVKHKIGMV--HQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEA 124
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
++EK+ + + K + +L+ G QQ+V + + + R+ +++ EPT L +
Sbjct: 125 KIKTIMEKYGIFVD-LKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQN 183
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
K + + K I+LIS L+EI Q++D V+ GK++ + ++K+ LLM G
Sbjct: 184 FLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKVVGSFDVKTTPVDKIALLMMG 243
>gb|AAD05298.1| (AF082511) putative ATP-binding protein MglA [Treponema denticola]
Length = 497
Score = 292 bits (740), Expect = 5e-78
Identities = 170/473 (35%), Positives = 269/473 (55%), Gaps = 7/473 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L G+NL V +G + GL+GENGAGKST+M+ L+G +G I + K + F P +A+
Sbjct: 21 LDGINLTVRQGSVMGLMGENGAGKSTMMKCLFGIYTRDEGAISLLNKSIEFKNPKEALES 80
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL--AKEKMREVGFEVPLNEIV 137
G+AMV+Q L TV +NL+L N GI + +++ A + V I+
Sbjct: 81 GVAMVHQELNLCLDRTVTDNLFLGRYPTNFGI-VDEIKMFESASSLFSSLNMNVNPKTIM 139
Query: 138 EDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITH 197
+ V +Q VEI KA+ NAK+++LDEPTS LT EVK+LF +R L+++G++ I+I+H
Sbjct: 140 RTMSVSQRQMVEIAKAVSYNAKLIVLDEPTSSLTEREVKKLFSIIRALQKKGVSFIYISH 199
Query: 198 KLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPGNTILK 257
K+ EV E+ D V VLR G+++ + + + E+ MV R + + PG LK
Sbjct: 200 KMDEVFEVCDEVAVLRDGKMILSKPVAGTNMNEIISAMVGRSLDKRFPDVDNVPGEDFLK 259
Query: 258 VEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLG 317
+E+L K ++ +SF +R+GEILG+ G+ G G+ EL AL GIR E G I +
Sbjct: 260 IENLKTK---YAPVLEDISFTVRKGEILGLYGLVGAGRSELLGALFGIRTIESGSISIND 316
Query: 318 KDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVE-NVVLTNLSRVLHKGRISWDKANEM 376
K + + E G A + + R++ + + +E N V+TNL+ G +S K E
Sbjct: 317 KYLKFKSSKEAMAHGFALLTEERKLNGMFGKDTIEFNTVITNLNNYKTIGVLSKRKIREA 376
Query: 377 TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFI 436
N +E S I LSGGNQQKV++G+ + R P V ++ EPT+G+D+GA I
Sbjct: 377 ANREIETMRTRCLSADQGISALSGGNQQKVIIGKWLERSPDVFLMDEPTRGIDVGAKYEI 436
Query: 437 RKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
+ ++K+ E K I+++S+++ EIL +++R+AV+ ++ I T+E E L
Sbjct: 437 YQLIIKMAKEGKTIIVVSSEMPEILGITNRIAVMSNRRLAGIVNTKETDQETL 489
Score = 80.4 bits (195), Expect = 4e-14
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L ++ V +GEI GL G GAG+S L+ L+G G I + K + F +A+
Sbjct: 271 LEDISFTVRKGEILGLYGLVGAGRSELLGALFGIRTIESGSISINDKYLKFKSSKEAMAH 330
Query: 80 GIAMVYQHFTLVPTF---TVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFE----VP 132
G A++ + L F T+ N + L+ I + K+ + RE+ +
Sbjct: 331 GFALLTEERKLNGMFGKDTIEFNTVITNLNNYKTIGVLSKRKIREAANREIETMRTRCLS 390
Query: 133 LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITV 192
++ + L G QQ+V I K L + + ++DEPT + E+++ + + + G T+
Sbjct: 391 ADQGISALSGGNQQKVIIGKWLERSPDVFLMDEPTRGIDVGAKYEIYQLIIKMAKEGKTI 450
Query: 193 IFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
I ++ ++ E+ IT+R+ V+ + G V T E + L R+
Sbjct: 451 IVVSSEMPEILGITNRIAVMSNRRLAGIVNTKETDQETLLRL 492
>sp|P32721|ALSA_ECOLI D-ALLOSE TRANSPORT ATP-BINDING PROTEIN ALSA >gi|1361038|pir||S56315
ABC-type transport protein homolog yjcW - Escherichia
coli >gi|536931|gb|AAA96986.1| (U14003) ORF_f510
[Escherichia coli] >gi|1790525|gb|AAC77048.1| (AE000482)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 510
Score = 287 bits (727), Expect = 2e-76
Identities = 183/492 (37%), Positives = 287/492 (58%), Gaps = 24/492 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ M+GI K + V AL+ VNL V GEIH LLGENGAGKSTLM++L G +PTKG I +
Sbjct: 6 ISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Query: 64 FGKEVSFNGPWD--AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINP--GIKISDVEKL 119
+S+N A + GI ++YQ +++ TVLENLY+ G+ I D ++
Sbjct: 65 --NNISYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREM 122
Query: 120 ---AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
A + VG +V L+E V +L + +Q +EI K LML+AK++I+DEPTS LT EV
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 177 ELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMV 236
LF + L++ G +++I+HKL E++ I DR TV++ G V + S+VS ++ R+MV
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRLMV 242
Query: 237 QRDVVMEISKGKSTPGN----TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQG 292
R++ + K N T+ +V ++ +D + V+ +SF + GEILG AG+ G
Sbjct: 243 GRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRK---KVRDISFSVCRGEILGFAGLVG 299
Query: 293 NGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVV 351
+G+ EL L G+ G+I L GKD++ + K G+AY+ +SRR G + ++
Sbjct: 300 SGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIA 359
Query: 352 ENVVLT-NLSRVLHKGRISW----DKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKV 406
+N+ ++ +L +KG + D+ N+ E + S I LSGGNQQKV
Sbjct: 360 QNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQ-RELLALKCHSVNQNITELSGGNQQKV 418
Query: 407 MVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDR 466
++ + + P+VI+ EPT+G+D+GA I K + +L D+ K IL++S++L EI+ + DR
Sbjct: 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDR 478
Query: 467 VAVIYEGKIMSI 478
+AV EG++ I
Sbjct: 479 IAVFCEGRLTQI 490
>sp|P37388|XYLG_ECOLI D-XYLOSE TRANSPORT ATP-BINDING PROTEIN XYLG >gi|1073617|pir||S47788
d-xylose transport ATP-binding protein xylG -
Escherichia coli >gi|466705|gb|AAB18544.1| (U00039) xylG
[Escherichia coli] >gi|1789991|gb|AAC76591.1| (AE000434)
putative ATP-binding protein of xylose transport system
[Escherichia coli K12]
Length = 513
Score = 286 bits (723), Expect = 5e-76
Identities = 188/482 (39%), Positives = 282/482 (58%), Gaps = 13/482 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT---KGE 60
+EM I K + V A+ V L++ GEI L GENG+GKSTLM++L G I P +GE
Sbjct: 5 LEMKNITKTF-GSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCG-IYPHGSYEGE 62
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I G+E+ + D R+GIA+++Q LV TVLEN++L + GI D+ L
Sbjct: 63 IIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMTLR 122
Query: 121 KEKM-REVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+K+ +V + + V DL +G QQ VEI KAL ++LILDEPT+ LT E L
Sbjct: 123 CQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSILL 182
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+R+L++ GI I+I+HKL EVK I+D + V+R G+ +GT + +SE ++ MMV R+
Sbjct: 183 DIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVGRE 242
Query: 240 VVMEISKGKSTPGNTILKVEDL--WVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRE 297
+ T G+ IL++E L W +R + V VSF L+ GEILGIAG+ G G+ E
Sbjct: 243 LTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGRTE 302
Query: 298 LAEALAGIRIPE-KGKIELLGKDVTKLPAHERYKSGLAYVP-DSRRVGLVLDMNVVENVV 355
+ L G+ + +GKI + GK V + G+A VP D +R G+V M V +N+
Sbjct: 303 TIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKNIT 362
Query: 356 LTNLSRVLHKGRISWDKANEM--TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREII 413
L L++ G D A E E +++ +V SS I LSGGNQQK ++ R ++
Sbjct: 363 LAALNK-FTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCLL 421
Query: 414 REPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEG 473
P+++++ EPT+G+DIGA I K + +L + +++IS++L E+L LSDRV V++EG
Sbjct: 422 LNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHEG 481
Query: 474 KI 475
K+
Sbjct: 482 KL 483
Score = 92.4 bits (226), Expect = 1e-17
Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 13/220 (5%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVF--GKEVSFNGPWDAIREG 80
V+ ++ GEI G+ G GAG++ ++ L+G + P + E K++ GK+V AI +G
Sbjct: 280 VSFSLKRGEILGIAGLVGAGRTETIQCLFG-VWPGQWEGKIYIDGKQVDIRNCQQAIAQG 338
Query: 81 IAMVYQHFT---LVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK-MREVGFEVPLNEI 136
IAMV + +VP V +N+ LA L+ G IS ++ A++K + E ++ +
Sbjct: 339 IAMVPEDRKRDGIVPVMAVGKNITLAALNKFTG-GISQLDDAAEQKCILESIQQLKVKTS 397
Query: 137 VEDLPVGI-----QQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGIT 191
DL +G QQ+ + + L+LN +ILILDEPT + E++K + L ++GI
Sbjct: 398 SPDLAIGRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIA 457
Query: 192 VIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSEREL 231
VI I+ +L EV ++DRV V+ G++ + +++ ++
Sbjct: 458 VIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQV 497
>gb|AAC43181.1| (U00006) matches PS00017: ATP/GTP-binding site motif A [Escherichia
coli]
Length = 502
Score = 284 bits (720), Expect = 1e-75
Identities = 179/479 (37%), Positives = 280/479 (58%), Gaps = 23/479 (4%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD- 75
V AL+ VNL V GEIH LLGENGAGKSTLM++L G +PTKG I + +S+N
Sbjct: 10 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI--NNISYNKLDHK 67
Query: 76 -AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINP--GIKISDVEKL---AKEKMREVGF 129
A + GI ++YQ +++ TVLENLY+ G+ I D ++ A + VG
Sbjct: 68 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGL 127
Query: 130 EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERG 189
+V L+E V +L + +Q +EI K LML+AK++I+DEPTS LT EV LF + L++ G
Sbjct: 128 KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 187
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKS 249
+++I+HKL E++ I DR TV++ G V + S+VS ++ R+MV R++ + K
Sbjct: 188 TAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRLMVGRELQNRFNAMKE 247
Query: 250 TPGN----TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGI 305
N T+ +V ++ +D + V+ +SF + GEILG AG+ G+G+ EL L G+
Sbjct: 248 NVSNLAHETVFEVRNVTSRDRK---KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 304
Query: 306 RIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLT-NLSRVL 363
G+I L GKD++ + K G+AY+ +SRR G + ++ +N+ ++ +L
Sbjct: 305 DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGG 364
Query: 364 HKGRISW----DKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVI 419
+KG + D+ N+ E + S I LSGGNQQKV++ + + P+VI
Sbjct: 365 YKGAMGLFHEVDEQRTAENQ-RELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVI 423
Query: 420 VVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+ EPT+G+D+GA I K + +L D+ K IL++S++L EI+ + DR+AV EG++ I
Sbjct: 424 IFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 482
>gb|AAD45713.1|AF160811_1 (AF160811) L-arabinose transport, ATP binding protein [Bacillus
stearothermophilus]
Length = 513
Score = 284 bits (718), Expect = 2e-75
Identities = 185/504 (36%), Positives = 288/504 (56%), Gaps = 19/504 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIK--PTKGEI 61
+EM GI K +P GV AL VN KV EGEIH L GENGAGKSTLM++L G GEI
Sbjct: 6 LEMRGITKQFP-GVKALDNVNFKVREGEIHALCGENGAGKSTLMKVLSGVYPYGTYDGEI 64
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
G+ F + + GI +++Q L+P ++ EN++L GI I+ E +A+
Sbjct: 65 VFKGEVCKFKNIKQSEQLGIVIIHQELALIPYLSIAENIFLGNERAKKGI-INWNETIAQ 123
Query: 122 EK--MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
K +++VG E + +V L VG QQ VEI KAL + K+LILDEPT+ L + + L
Sbjct: 124 TKKLLQKVGLEESPHTLVGQLGVGKQQLVEIAKALAKDVKLLILDEPTAALNEDDSENLL 183
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTV--KTSEVSERELARMMVQ 237
L LK++G++ I I+HKL E+ ++ D +T+LR G+ + T+ K EV+E + R MV
Sbjct: 184 NLLLELKKQGLSAIIISHKLNEITKVADSITILRDGKTIETLDMKHDEVTEDRIIRGMVG 243
Query: 238 RDVVMEISKGKSTPGNTILKVEDLWV-----KDDRGLDAVKGVSFELREGEILGIAGVQG 292
RD+ G I +V++ V + + LD + + +R GEI+GIAG+ G
Sbjct: 244 RDLTNRYPARTPKIGEVIFEVKNWTVYHPIYSERKVLDHI---NLSIRRGEIVGIAGLMG 300
Query: 293 NGQRELAEALAGIRIPEK--GKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMN 349
G+ ELA ++ G +K G+I G + + +G+AYV + R+ GL+L +
Sbjct: 301 AGRTELAMSIFGRSYGKKISGEIWKNGVKIDVSDVSKAIANGIAYVTEDRKGNGLILMED 360
Query: 350 VVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVG 409
+ +N+ L+ L ++ + + ++ + ++F++ S ++ LSGGNQQKV++
Sbjct: 361 IRKNITLSRLGKISNHFVVDENQEIVESERFRDQFKIKTPSVFQKVEALSGGNQQKVVLS 420
Query: 410 REIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAV 469
+ I EP ++++ EPT+G+D+GA I + +L D KGIL+IS++L EIL + DR+ V
Sbjct: 421 KWIFAEPDILILDEPTRGIDVGAKYEIYTIIQQLADAGKGILMISSELPEILGMCDRIYV 480
Query: 470 IYEGKIMSIGKTEEFTLEKLGLLM 493
+ EG+I EE T EKL LM
Sbjct: 481 MSEGRITGEVSREEATQEKLMRLM 504
Score = 84.3 bits (205), Expect = 3e-15
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 9/224 (4%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEI--KPTKGEIKVFGKEVSFNGPWDAIREG 80
+NL + GEI G+ G GAG++ L ++G K GEI G ++ + AI G
Sbjct: 283 INLSIRRGEIVGIAGLMGAGRTELAMSIFGRSYGKKISGEIWKNGVKIDVSDVSKAIANG 342
Query: 81 IAMVYQHFT---LVPTFTVLENLYLAMLS-INPGIKISDVEKLAKEKMREVGFEVPLNEI 136
IA V + L+ + +N+ L+ L I+ + + +++ + + F++ +
Sbjct: 343 IAYVTEDRKGNGLILMEDIRKNITLSRLGKISNHFVVDENQEIVESERFRDQFKIKTPSV 402
Query: 137 ---VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVI 193
VE L G QQ+V + K + ILILDEPT + E++ ++ L + G ++
Sbjct: 403 FQKVEALSGGNQQKVVLSKWIFAEPDILILDEPTRGIDVGAKYEIYTIIQQLADAGKGIL 462
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
I+ +L E+ + DR+ V+ G + G V E ++ +L R+M +
Sbjct: 463 MISSELPEILGMCDRIYVMSEGRITGEVSREEATQEKLMRLMTK 506
>gb|AAB51510.1| (U91632) sugar transporter [Agrobacterium tumefaciens]
Length = 512
Score = 281 bits (711), Expect = 1e-74
Identities = 177/487 (36%), Positives = 280/487 (57%), Gaps = 13/487 (2%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT---K 58
T +EM I K +P GV AL VNLKV+EGEIH L+GENGAGKSTLM++L G + P +
Sbjct: 4 TILEMRNITKTFP-GVKALENVNLKVKEGEIHALVGENGAGKSTLMKVLSG-VYPAGTYE 61
Query: 59 GEIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM-LSINPGIKISDVE 117
GEI G +F D+ GI +++Q LVP ++ EN++L ++ N I
Sbjct: 62 GEIHYEGAVRNFRAINDSEDIGIIIIHQELALVPLLSIAENIFLGNEVASNGVISWQQTF 121
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
+E +++VG + ++ D+ VG QQ VEI KAL + K+LILDEPT+ L + +
Sbjct: 122 NRTRELLKKVGLKESPETLITDIGVGKQQLVEIAKALSKSVKLLILDEPTASLNESDSEA 181
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKT--SEVSERELARMM 235
L L + +G+T I ITHKL EV+++ D++TVLR G V T+ E+SE + R M
Sbjct: 182 LLNLLMEFRNQGMTSIIITHKLNEVRKVADQITVLRDGMTVKTLDCHQEEISEDVIIRNM 241
Query: 236 VQRDVVMEISKGKSTPGNTILKVED--LWVKDDRGLDAVKGVSFELREGEILGIAGVQGN 293
V RD+ G TIL+V++ + + R + ++ +R+GE++GIAG+ G
Sbjct: 242 VGRDLEDRYPPRDVPIGETILEVKNWNAYHQQHRDRQVLHDINVTVRKGEVVGIAGLMGA 301
Query: 294 GQRELAEALAGIRIPEK--GKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNV 350
G+ E A ++ G + G + + GK V + +GLAYV + R+ +GLVL+ N+
Sbjct: 302 GRTEFAMSVFGKSYGHRITGDVLIDGKPVDVSTVRKAIDAGLAYVTEDRKHLGLVLNDNI 361
Query: 351 VENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGR 410
+ N L NL+ V I K ++ ++ + + S +LSGGNQQKV++ +
Sbjct: 362 LHNTTLANLAGVSKASIIDDIKEMKVASDFRTRLRIRSSGIFQETVNLSGGNQQKVVLSK 421
Query: 411 EIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVI 470
+ P V+++ EPT+G+D+GA I + +L + KG+L+IS+++ E+L DR+ V+
Sbjct: 422 WLFSNPDVLILDEPTRGIDVGAKYEIYTIINQLAADGKGVLMISSEMPELLGNCDRIYVM 481
Query: 471 YEGKIMS 477
EG+I++
Sbjct: 482 NEGRIVA 488
Score = 79.2 bits (192), Expect = 1e-13
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 9/227 (3%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTK--GEIKVFGKEVSFNGPWDAI 77
L +N+ V +GE+ G+ G GAG++ ++G+ + G++ + GK V + AI
Sbjct: 280 LHDINVTVRKGEVVGIAGLMGAGRTEFAMSVFGKSYGHRITGDVLIDGKPVDVSTVRKAI 339
Query: 78 REGIAMVYQ---HFTLVPTFTVLENLYLAMLS-INPGIKISDVEKLAKEKMREVGFEVPL 133
G+A V + H LV +L N LA L+ ++ I D++++ +
Sbjct: 340 DAGLAYVTEDRKHLGLVLNDNILHNTTLANLAGVSKASIIDDIKEMKVASDFRTRLRIRS 399
Query: 134 NEIVED---LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGI 190
+ I ++ L G QQ+V + K L N +LILDEPT + E++ + L G
Sbjct: 400 SGIFQETVNLSGGNQQKVVLSKWLFSNPDVLILDEPTRGIDVGAKYEIYTIINQLAADGK 459
Query: 191 TVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
V+ I+ ++ E+ DR+ V+ G +V + E S+ + R +++
Sbjct: 460 GVLMISSEMPELLGNCDRIYVMNEGRIVAELPKGEASQESIMRAIMR 506
>dbj|BAB07160.1| (AP001518) L-arabinose ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 517
Score = 275 bits (697), Expect = 6e-73
Identities = 177/502 (35%), Positives = 281/502 (55%), Gaps = 23/502 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIK--PTKGEI 61
+EM I K +P GV AL VNLKVE+GEIH L+GENGAGKSTLM++L G +G+I
Sbjct: 8 LEMRNITKAFP-GVKALNNVNLKVEQGEIHALVGENGAGKSTLMKVLSGVYPHGTYEGDI 66
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGI-----KISDV 116
G+ F ++ + GI +++Q LVP ++ EN++L G+ I++
Sbjct: 67 LFEGRVCQFKDIKESEQLGIVIIHQELALVPELSIAENIFLGNEQAKNGVIDWNQTITEA 126
Query: 117 EKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
KL K+ VG + ++ VG QQ VEI KAL K+LILDEPT+ L + +
Sbjct: 127 AKLLKK----VGLSDSPRTLAMNIGVGKQQLVEIAKALSKKVKLLILDEPTAALNEEDSQ 182
Query: 177 ELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTV--KTSEVSERELARM 234
L L K++G+T I I+HKL E+ + D +T+LR G+ + T+ ++ EV+E + +
Sbjct: 183 NLLHLLLEFKKQGMTSIIISHKLNEISYVADHLTILRDGQSIETLSLQSGEVTEDRIIKG 242
Query: 235 MVQRDVVMEISKGKSTPGNTILKVEDLWVKD----DRGLDAVKGVSFELREGEILGIAGV 290
MV RD+ + G+ IL+V V D DR L +K V+ L+ GEI+G+AG+
Sbjct: 243 MVGRDLENRFPPREPKIGDVILEVNHWHVDDPLHPDRSL--IKDVNLYLKRGEIVGVAGL 300
Query: 291 QGNGQRELAEALAGIRIPEKGKIELL--GKDVTKLPAHERYKSGLAYVPDSRRV-GLVLD 347
G G+ ELA ++ G + + +L+ GK++ + GLAYV + R+ GL+L
Sbjct: 301 MGAGRTELAMSIFGKSYGKNIRGQLIKDGKEIKVHSVKDAIDHGLAYVTEDRKTYGLILI 360
Query: 348 MNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVM 407
++ N+ LT+L ++ G + + + + +K + S +LSGGNQQKV+
Sbjct: 361 DDIKHNISLTSLEKLSKNGVVDKTREVKEAEDFRKKMNIRTPSIDQKTGNLSGGNQQKVV 420
Query: 408 VGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRV 467
+ + I+ P ++++ EPT+G+D+GA I + +L + K +L+IS++L E+L LSDR+
Sbjct: 421 LSKWILSGPDILILDEPTRGIDVGAKYEIYSVIHELAAQGKAVLVISSELPELLGLSDRI 480
Query: 468 AVIYEGKIMSIGKTEEFTLEKL 489
+ EG+I EE E L
Sbjct: 481 YALCEGRITGEVTREEANQEIL 502
Score = 85.8 bits (209), Expect = 1e-15
Identities = 65/235 (27%), Positives = 121/235 (50%), Gaps = 10/235 (4%)
Query: 12 VYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEI--KPTKGEIKVFGKEVS 69
++PD + ++ VNL ++ GEI G+ G GAG++ L ++G+ K +G++ GKE+
Sbjct: 275 LHPDRSL-IKDVNLYLKRGEIVGVAGLMGAGRTELAMSIFGKSYGKNIRGQLIKDGKEIK 333
Query: 70 FNGPWDAIREGIAMVYQH---FTLVPTFTVLENLYLAML---SINPGIKISDVEKLAKEK 123
+ DAI G+A V + + L+ + N+ L L S N + + K A++
Sbjct: 334 VHSVKDAIDHGLAYVTEDRKTYGLILIDDIKHNISLTSLEKLSKNGVVDKTREVKEAEDF 393
Query: 124 MREVGFEVP-LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+++ P +++ +L G QQ+V + K ++ ILILDEPT + E++ +
Sbjct: 394 RKKMNIRTPSIDQKTGNLSGGNQQKVVLSKWILSGPDILILDEPTRGIDVGAKYEIYSVI 453
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
L +G V+ I+ +L E+ ++DR+ L G + G V E ++ L + M +
Sbjct: 454 HELAAQGKAVLVISSELPELLGLSDRIYALCEGRITGEVTREEANQEILMKYMTR 508
>gb|AAC44749.1| (U45323) MglA [Treponema pallidum]
Length = 496
Score = 272 bits (689), Expect = 5e-72
Identities = 159/474 (33%), Positives = 262/474 (54%), Gaps = 9/474 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L GVN ++ +G + GL+GENGAGKSTLM+ L+G G+I V G V F P +A+
Sbjct: 20 LNGVNFRMGKGAVVGLMGENGAGKSTLMKCLFGMYAKDTGQILVDGSPVDFQSPKEALEN 79
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMR---EVGFEVPLNEI 136
G+AMV+Q TV++NL+L GI D +++ + + + +V +
Sbjct: 80 GVAMVHQELNQCLDRTVMDNLFLGRYPARFGIV--DEKRMLDDSLTLFASLKMDVNPRAV 137
Query: 137 VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFIT 196
+ + V +Q VEI KA+ NAKI++LDEPTS LT E+ LF +R+L ++G+ I+I+
Sbjct: 138 MRSMSVSQRQMVEIAKAMSYNAKIIVLDEPTSSLTEREIVRLFAIIRDLSKKGVAFIYIS 197
Query: 197 HKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPGNTIL 256
HK+ E+ +I V VLR G + + EV +L MV R + +T G+ L
Sbjct: 198 HKMDEIFQICSEVIVLRDGVLTLSQSIGEVEMSDLITAMVGRTLDKRFPDADNTVGDDYL 257
Query: 257 KVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELL 316
++ L R ++ +S ++ GEI G+ G+ G G+ EL EA+ G+R G+I L
Sbjct: 258 EIRGL---STRYAPQLRDISLSVKRGEIFGLYGLVGAGRSELLEAIFGLRTIADGEISLA 314
Query: 317 GKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
GK + + + K A+VP+ R++ G+ ++ N + NL G +S K E
Sbjct: 315 GKKIRLKSSRDAMKLNFAFVPEERKLNGMFAKGSIEYNTTIANLPAYKRYGLLSKKKLQE 374
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
++ V S I LSGGNQQKV++G+ + R+P V+++ EPT+G+D+GA
Sbjct: 375 AAEREIKAMRVKCVSPSELISALSGGNQQKVIIGKWLERDPDVLLLDEPTRGIDVGAKYE 434
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
I + ++++ E K I+++S+++ EIL +++R+AV+ ++ I T+ E L
Sbjct: 435 IYQLIIRMAREGKTIIVVSSEMPEILGITNRIAVMSNYRLAGIVDTKSTDQEAL 488
Score = 89.7 bits (219), Expect = 7e-17
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 11/224 (4%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
LR ++L V+ GEI GL G GAG+S L+ ++G GEI + GK++ DA++
Sbjct: 270 LRDISLSVKRGEIFGLYGLVGAGRSELLEAIFGLRTIADGEISLAGKKIRLKSSRDAMKL 329
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFE--------- 130
A V + L F Y ++ P K + L+K+K++E
Sbjct: 330 NFAFVPEERKLNGMFAKGSIEYNTTIANLPAYKRYGL--LSKKKLQEAAEREIKAMRVKC 387
Query: 131 VPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGI 190
V +E++ L G QQ+V I K L + +L+LDEPT + E+++ + + G
Sbjct: 388 VSPSELISALSGGNQQKVIIGKWLERDPDVLLLDEPTRGIDVGAKYEIYQLIIRMAREGK 447
Query: 191 TVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
T+I ++ ++ E+ IT+R+ V+ + G V T + L R+
Sbjct: 448 TIIVVSSEMPEILGITNRIAVMSNYRLAGIVDTKSTDQEALLRL 491
>sp|Q56342|MGLA_TREPA GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA HOMOLOG
>gi|2120519|pir||JC5170 probable methylgalactoside
transport ATP-binding protein mglA - syphilis spirochete
>gi|1230602|gb|AAC44585.1| (U48416) MglA [Treponema
pallidum] >gi|3322982|gb|AAC65648.1| (AE001242)
methylgalactoside ABC transporter, ATP binding protein
(mglA) [Treponema pallidum]
Length = 496
Score = 272 bits (688), Expect = 7e-72
Identities = 159/474 (33%), Positives = 262/474 (54%), Gaps = 9/474 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L GVN ++ +G + GL+GENGAGKSTLM+ L+G G+I V G V F P +A+
Sbjct: 20 LNGVNFRMGKGAVVGLMGENGAGKSTLMKCLFGMYAKDTGQILVDGSPVDFQSPKEALEN 79
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMR---EVGFEVPLNEI 136
G+AMV+Q TV++NL+L GI D +++ + + + +V +
Sbjct: 80 GVAMVHQELNQCLDRTVMDNLFLGRYPARFGIV--DEKRMFDDSLTLFASLKMDVNPRAV 137
Query: 137 VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFIT 196
+ + V +Q VEI KA+ NAKI++LDEPTS LT E+ LF +R+L ++G+ I+I+
Sbjct: 138 MRSMSVSQRQMVEIAKAMSYNAKIIVLDEPTSSLTEREIVRLFAIIRDLSKKGVAFIYIS 197
Query: 197 HKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPGNTIL 256
HK+ E+ +I V VLR G + + EV +L MV R + +T G+ L
Sbjct: 198 HKMDEIFQICSEVIVLRDGVLTLSQSIGEVEMSDLITAMVGRTLDKRFPDADNTVGDDYL 257
Query: 257 KVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELL 316
++ L R ++ +S ++ GEI G+ G+ G G+ EL EA+ G+R G+I L
Sbjct: 258 EIRGL---STRYAPQLRDISLSVKRGEIFGLYGLVGAGRSELLEAIFGLRTIADGEISLA 314
Query: 317 GKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
GK + + + K A+VP+ R++ G+ ++ N + NL G +S K E
Sbjct: 315 GKKIRLKSSRDAMKLNFAFVPEERKLNGMFAKGSIEYNTTIANLPAYKRYGLLSKKKLQE 374
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
++ V S I LSGGNQQKV++G+ + R+P V+++ EPT+G+D+GA
Sbjct: 375 AAEREIKAMRVKCVSPSELISALSGGNQQKVIIGKWLERDPDVLLLDEPTRGIDVGAKYE 434
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
I + ++++ E K I+++S+++ EIL +++R+AV+ ++ I T+ E L
Sbjct: 435 IYQLIIRMAREGKTIIVVSSEMPEILGITNRIAVMSNYRLAGIVDTKSTDQEAL 488
Score = 89.7 bits (219), Expect = 7e-17
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 11/224 (4%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
LR ++L V+ GEI GL G GAG+S L+ ++G GEI + GK++ DA++
Sbjct: 270 LRDISLSVKRGEIFGLYGLVGAGRSELLEAIFGLRTIADGEISLAGKKIRLKSSRDAMKL 329
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFE--------- 130
A V + L F Y ++ P K + L+K+K++E
Sbjct: 330 NFAFVPEERKLNGMFAKGSIEYNTTIANLPAYKRYGL--LSKKKLQEAAEREIKAMRVKC 387
Query: 131 VPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGI 190
V +E++ L G QQ+V I K L + +L+LDEPT + E+++ + + G
Sbjct: 388 VSPSELISALSGGNQQKVIIGKWLERDPDVLLLDEPTRGIDVGAKYEIYQLIIRMAREGK 447
Query: 191 TVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARM 234
T+I ++ ++ E+ IT+R+ V+ + G V T + L R+
Sbjct: 448 TIIVVSSEMPEILGITNRIAVMSNYRLAGIVDTKSTDQEALLRL 491
>sp|P45046|XYLG_HAEIN D-XYLOSE TRANSPORT ATP-BINDING PROTEIN XYLG >gi|1073980|pir||B64183
D-xylose transport ATP-binding protein xylG -
Haemophilus influenzae (strain Rd KW20)
>gi|1574664|gb|AAC22764.1| (U32791) D-xylose ABC
transporter, ATP-binding protein (xylG) [Haemophilus
influenzae Rd]
Length = 503
Score = 272 bits (687), Expect = 9e-72
Identities = 175/484 (36%), Positives = 278/484 (57%), Gaps = 11/484 (2%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT--- 57
M +EM I K + D V AL +++++E GEI L GENG+GKSTLM+IL G I P
Sbjct: 1 MALLEMKHITKKFGD-VTALHNISIELEAGEILSLCGENGSGKSTLMKILCG-IYPCGDY 58
Query: 58 KGEIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE 117
G+I E+ D +GI++++Q TLV +VLEN++L + G+ +
Sbjct: 59 SGDIYFSESELKARNIRDTEEKGISIIHQELTLVKNMSVLENIFLGNEITHKGLTADNEM 118
Query: 118 KL-AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
L K +++V + N V +L +G QQ VEI KAL ++LILDEPT+ LT E +
Sbjct: 119 YLRCKNLLQQVQLDADPNTRVGELGLGQQQLVEIAKALNKQVRLLILDEPTASLTEKETE 178
Query: 177 ELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMV 236
L +++LK I I+I+HKL EVK I+D++ V+R GE VGT S ++E ++ MMV
Sbjct: 179 ILLNLIKDLKAHNIACIYISHKLNEVKAISDKICVIRDGEHVGTKDASTMTEDDIITMMV 238
Query: 237 QRDVVMEISKGKSTPGNTILKVEDL--WVKDDRGLDAVKGVSFELREGEILGIAGVQGNG 294
R++ + IL+VE+L W + + V VSF L EGEILG+AG+ G+G
Sbjct: 239 GREITSLYPHEPHEIKDEILRVENLSAWHPINTHIKRVDNVSFSLHEGEILGVAGLVGSG 298
Query: 295 QRELAEALAGIRIPE-KGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVE 352
+ ++ + L G + +G I + K V + + + VP+ R+ G+V M V +
Sbjct: 299 RTDMVQCLFGSYEGKFEGNIFINQKQVNIKNCAQAIEHKIVMVPEDRKKHGIVSIMGVGK 358
Query: 353 NVVLTNL-SRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGRE 411
N+ L++L S K ++ K ++ +++ +V S PI LSGGNQQK ++ +
Sbjct: 359 NITLSSLKSYCFGKMVVNEAKEEQIIGSAIKRLKVKTFSPDLPIGRLSGGNQQKAILAKC 418
Query: 412 IIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIY 471
+ PK++++ EPT+G+D+GA I K + +L E I++IS++L E+L +SDRV V++
Sbjct: 419 LSLNPKILILDEPTRGIDVGAKYEIYKLINQLAQEGIAIIVISSELPEVLGISDRVLVMH 478
Query: 472 EGKI 475
+GK+
Sbjct: 479 QGKL 482
Score = 82.3 bits (200), Expect = 1e-14
Identities = 62/218 (28%), Positives = 112/218 (50%), Gaps = 9/218 (4%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT-KGEIKVFGKEVSFNGPWDAIREGI 81
V+ + EGEI G+ G G+G++ +++ L+G + +G I + K+V+ AI I
Sbjct: 279 VSFSLHEGEILGVAGLVGSGRTDMVQCLFGSYEGKFEGNIFINQKQVNIKNCAQAIEHKI 338
Query: 82 AMVYQH---FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVE 138
MV + +V V +N+ L+ L K+ E ++ + + +
Sbjct: 339 VMVPEDRKKHGIVSIMGVGKNITLSSLKSYCFGKMVVNEAKEEQIIGSAIKRLKVKTFSP 398
Query: 139 DLPVGI-----QQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVI 193
DLP+G QQ+ + K L LN KILILDEPT + E++K + L + GI +I
Sbjct: 399 DLPIGRLSGGNQQKAILAKCLSLNPKILILDEPTRGIDVGAKYEIYKLINQLAQEGIAII 458
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSEREL 231
I+ +L EV I+DRV V+ +G++ ++ + +++ ++
Sbjct: 459 VISSELPEVLGISDRVLVMHQGKLKASLINTALTQEQV 496
Score = 73.7 bits (178), Expect = 4e-12
Identities = 54/227 (23%), Positives = 109/227 (47%), Gaps = 7/227 (3%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRI--PEKGKIELLGKDVTKLPAHER 328
A+ +S EL GEIL + G G+G+ L + L GI G I ++ +
Sbjct: 18 ALHNISIELEAGEILSLCGENGSGKSTLMKILCGIYPCGDYSGDIYFSESELKARNIRDT 77
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
+ G++ + + + LV +M+V+EN+ L N + HKG + ++ ++++ + L
Sbjct: 78 EEKGISII--HQELTLVKNMSVLENIFLGN--EITHKGLTADNEMYLRCKNLLQQVQ-LD 132
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
+ + L G QQ V + + + ++ +++++ EPT L TE + + L+
Sbjct: 133 ADPNTRVGELGLGQQQLVEIAKALNKQVRLLILDEPTASLTEKETEILLNLIKDLKAHNI 192
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+ IS L+E+ +SD++ VI +G+ + T + + +M G
Sbjct: 193 ACIYISHKLNEVKAISDKICVIRDGEHVGTKDASTMTEDDIITMMVG 239
>sp|P77509|YPHE_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YPHE
>gi|7445633|pir||B65032 hypothetical protein b2547 -
Escherichia coli (strain K-12)
>gi|1788897|gb|AAC75600.1| (AE000340) putative
ATP-binding component of a transport system [Escherichia
coli K12] >gi|1799964|dbj|BAA16449.1| (D90884)
GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA.
[Escherichia coli] >gi|1799972|dbj|BAA16456.1| (D90885)
GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA.
[Escherichia coli]
Length = 503
Score = 269 bits (681), Expect = 4e-71
Identities = 164/485 (33%), Positives = 274/485 (55%), Gaps = 20/485 (4%)
Query: 2 TAVEMSGIVKV------YPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIK 55
TA E + KV YP GVVAL VN + +GE+ LLG+NGAGKSTL+R+L G +
Sbjct: 3 TATEAVPVAKVVAGNKRYP-GVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSER 61
Query: 56 PTKGEI-----KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG 110
P G+I ++ G E + A G+ VYQ +LV TV ENL L G
Sbjct: 62 PDSGDIWIGETRLEGDEATLTRR--AAELGVRAVYQELSLVEGLTVAENLCLGQWPRRNG 119
Query: 111 -IKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSV 169
I + + A+ ++ +G +V ++V L +Q VEI + + +++ILDEPTS
Sbjct: 120 MIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSS 179
Query: 170 LTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
L EV+ + ++ + G+ VI+++H+++E++ I TV+R G+V G V S
Sbjct: 180 LASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTH 239
Query: 230 ELARMMVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAG 289
+ +M+ RD V +I+ I+ L V+ R ++ +SF LR GE+LGIAG
Sbjct: 240 HIVSLMLGRDHV-DIAP---VAPQEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAG 295
Query: 290 VQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDM 348
+ G G+ EL +A+ G+ E+G+I + G+ +T+ + K G+ Y P++R+ G++ +
Sbjct: 296 LLGAGRSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKRGIGYTPENRKEAGIIPWL 355
Query: 349 NVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMV 408
V EN VLTN ++ G + W +T EV+++ V +S++ PI LSGGNQQKV++
Sbjct: 356 GVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVKAASSETPIGTLSGGNQQKVVI 415
Query: 409 GREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVA 468
GR + +++++ EPT+G+DI A + I + + +L E K ++ IS++++E+ + DR+
Sbjct: 416 GRWVYAASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEVEELPLVCDRIL 475
Query: 469 VIYEG 473
++ G
Sbjct: 476 LLQHG 480
>pir||G83402 ribose transport protein RbsA PA1947 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947944|gb|AAG05335.1|AE004621_6 (AE004621) ribose
transport protein RbsA [Pseudomonas aeruginosa]
Length = 510
Score = 268 bits (678), Expect = 1e-70
Identities = 172/493 (34%), Positives = 280/493 (55%), Gaps = 16/493 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ + G+ K Y V+A ++L++ GE+ L GENGAGKSTL +I+ G +P G +++
Sbjct: 9 LSIRGVGKTYAQPVLA--EIDLQLFGGEVLALTGENGAGKSTLSKIVGGLERPGAGSLEL 66
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG-IKISDVEKLAKE 122
G+ + +A G+ MV Q L+PT +V ENL+L L G I + A+E
Sbjct: 67 LGRPYAPASRREAEALGVRMVMQELNLLPTLSVAENLFLHDLPRRAGWIDRRRLRAAARE 126
Query: 123 KMREVGFE-VPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
M +VG E + + +V DL +G QQ VEI + L+ + ++LILDEPT++LT EV LF+
Sbjct: 127 AMAQVGLEAIDPDTLVGDLGIGHQQMVEIARNLIGDCRLLILDEPTAMLTAREVDMLFEQ 186
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+ L+ERG+ +++I+H+L+E+ I+ R+ VLR G +V +L +MV RD+
Sbjct: 187 VERLRERGVAIVYISHRLEELARISQRIAVLRDGRLVCVEPIERYDADQLVTLMVGRDLG 246
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
G G +L+VE L RG V VSFE+R GEI GI+G+ G+G+ EL
Sbjct: 247 ERFDLGPRQTGAPLLRVERL---SRRG--KVHEVSFEVRAGEIFGISGLIGSGRTELLRL 301
Query: 302 LAGIRIPEKGKIELLGKDVTKL----PAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVL 356
+ G + G++ LLG +L PA + + G+A + + R+ GL+LD ++ N+ L
Sbjct: 302 IYGADRADGGQV-LLGDPPQRLSLRSPA-DSVRQGVALITEDRKGEGLLLDQSISANLAL 359
Query: 357 TNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREP 416
NL + G I + + VE V + T + LSGGNQQKV++GR + R+
Sbjct: 360 GNLPALARHGVIDRRREEALARRQVEALRVRCADTAQAVGELSGGNQQKVVIGRWLERDC 419
Query: 417 KVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
+V++ EPT+G+D+GA I L +L K ++++S+DL E++ + DR+ V+ G+++
Sbjct: 420 QVLLFDEPTRGIDVGAKFDIYALLAELTRRGKALVVVSSDLRELMLICDRIGVLSAGRMV 479
Query: 477 SIGKTEEFTLEKL 489
+ + +T + L
Sbjct: 480 DTFERDAWTQDAL 492
Score = 88.9 bits (217), Expect = 1e-16
Identities = 57/221 (25%), Positives = 110/221 (48%), Gaps = 4/221 (1%)
Query: 275 VSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLA 334
+ +L GE+L + G G G+ L++ + G+ P G +ELLG+ PA R L
Sbjct: 26 IDLQLFGGEVLALTGENGAGKSTLSKIVGGLERPGAGSLELLGRPYA--PASRREAEALG 83
Query: 335 YVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAP 394
+ + L+ ++V EN+ L +L R G I + E + + +
Sbjct: 84 VRMVMQELNLLPTLSVAENLFLHDLPR--RAGWIDRRRLRAAAREAMAQVGLEAIDPDTL 141
Query: 395 IKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLIS 454
+ L G+QQ V + R +I + +++++ EPT L + + + + +LR+ I+ IS
Sbjct: 142 VGDLGIGHQQMVEIARNLIGDCRLLILDEPTAMLTAREVDMLFEQVERLRERGVAIVYIS 201
Query: 455 TDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
L+E+ ++S R+AV+ +G+++ + E + ++L LM G
Sbjct: 202 HRLEELARISQRIAVLRDGRLVCVEPIERYDADQLVTLMVG 242
>pir||I40465 ATP binding protein - Bacillus subtilis >gi|397497|emb|CAA81051.1|
(Z25798) ATP Binding Protein [Bacillus subtilis]
Length = 453
Score = 265 bits (670), Expect = 9e-70
Identities = 164/495 (33%), Positives = 274/495 (55%), Gaps = 49/495 (9%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM I K + V L GV+ ++ GE+H L+GENGAGKS LM IL G K KG+I +
Sbjct: 3 IEMKDIHKTFGKNQV-LSGVSFQLMPGEVHALMGENGAGKSRLMNILTGLHKADKGQISI 61
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM-LSINPGI-KISDVEKLAK 121
G E F+ P +A + GIA ++Q + P TVLENL++ +S G+ + ++ LAK
Sbjct: 62 NGNETYFSNPKEAEQHGIAFIHQELNIWPEMTVLENLFIGKEISSKLGVLQTRKMKALAK 121
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E+ ++ + L++ + VG QQ +EI KALM NA+++I+DEPT+ LT E+ +LF+
Sbjct: 122 EQFDKLSVSLSLDQEAGECSVGQQQMIEIAKALMTNAEVIIMDEPTAALTEREISKLFEV 181
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+ LK+ G+++++I+H+++E+ I DR+T++R G+ V T SE E+ + MV R++
Sbjct: 182 ITALKKNGVSIVYISHRMEEIFAICDRITIMRDGKTVDTTNISETDFDEVVKKMVGRELT 241
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
K + G+ + +V++ VK + + VSF +R GEI+G++G+ G G+ E+ A
Sbjct: 242 ERYPKRTPSLGDKVFEVKNASVK-----GSFEDVSFYVRSGEIVGVSGLMGAGRTEMMRA 296
Query: 302 LAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSR 361
L G+ + G+I + GK E K + +L ++R
Sbjct: 297 LFGVDRLDTGEIWIAGKKTAIKNPQEAVKK--------------------VSALLQRIAR 336
Query: 362 VLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQ-QKVMVGREIIREPKVIV 420
+ KG S +S + +HLSGG +KV++ + I PKV++
Sbjct: 337 M--KGSCS------------------TASPETHARHLSGGKPGKKVVIAKWIGIGPKVLI 376
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+ EPT+G+D+GA I + +L + I+++S++L EIL +SDR+ V++EG+I
Sbjct: 377 LDEPTRGVDVGAKREIYTLMNELTERGVAIIMVSSELPEILGMSDRIIVVHEGRISGEIH 436
Query: 481 TEEFTLEKLGLLMGG 495
E T E++ L G
Sbjct: 437 AREATQERIMTLATG 451
>sp|P77257|EGO_ECOLI PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN EGO (EGO10A)
>gi|7445685|pir||D64905 probable sugar transport
ATP-binding protein b1513 - Escherichia coli
>gi|1742490|dbj|BAA15200.1| (D90794) Ribose transport
ATP-binding protein RbsA. [Escherichia coli]
>gi|1787792|gb|AAC74586.1| (AE000249) putative
ATP-binding component of a transport system [Escherichia
coli K12] >gi|3661533|gb|AAC61747.1| (AF089855) aerobic
growth essential protein [Escherichia coli]
Length = 511
Score = 265 bits (670), Expect = 9e-70
Identities = 165/484 (34%), Positives = 273/484 (56%), Gaps = 35/484 (7%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
GV L+G++ + +GE+H LLG NGAGKSTLM+I+ G G +++ G P
Sbjct: 23 GVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVH 82
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNE 135
A + GI +V Q L P+ ++ EN+ + K ++K+ K + +G + L+
Sbjct: 83 AHQLGIYLVPQEPLLFPSLSIKENILFGLAK-----KQLSMQKM-KNLLAALGCQFDLHS 136
Query: 136 IVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFI 195
+ L V +Q VEI++ LM +++ILILDEPT+ LTP E + LF L+ L G+ ++FI
Sbjct: 137 LAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQELLATGVGIVFI 196
Query: 196 THKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR----------MMVQRDVVMEI- 244
+HKL E+++I DR++V+R G + + KTSE+S ++ + + + + +E+
Sbjct: 197 SHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAITPAVREKSLSASQKLWLELP 256
Query: 245 -SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALA 303
++ + G +L +E+L + + VS L GEILG+AG+ G G+ ELAE L
Sbjct: 257 GNRPQHAAGTPVLTLENLTG------EGFRNVSLTLNAGEILGLAGLVGAGRTELAETLY 310
Query: 304 GIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTNLSRV 362
G+R G+I L GK++ KL ER GL Y+P+ R+ GL LD ++ NV +
Sbjct: 311 GLRTLRGGRIMLNGKEINKLSTGERLLRGLVYLPEDRQSSGLNLDASLAWNV-----CAL 365
Query: 363 LHKGRISWDKANEMTNEVVEKF----EVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
H R W K + N +E++ + + + + LSGGNQQK+++ + + P+V
Sbjct: 366 THNLRGFWAKTAK-DNATLERYRRALNIKFNQPEQAARTLSGGNQQKILIAKCLEASPQV 424
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
++V EPT+G+D+ A I + L + + +LLIS+DL+EI ++DRV V+++G+I
Sbjct: 425 LIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLLISSDLEEIELMADRVYVMHQGEITHS 484
Query: 479 GKTE 482
TE
Sbjct: 485 ALTE 488
Score = 89.3 bits (218), Expect = 9e-17
Identities = 60/226 (26%), Positives = 114/226 (49%), Gaps = 12/226 (5%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K G++ +KG+ F L +GE+ + G G G+ L + +AGI + G +E+ G + +L
Sbjct: 19 KQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRL 78
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
++ G+ VP L +++ EN++ L K ++S K + + +
Sbjct: 79 TPVHAHQLGIYLVPQEPL--LFPSLSIKENILFG-----LAKKQLSMQKMKNLLAALGCQ 131
Query: 384 FEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
F++ + L ++Q V + R ++R+ +++++ EPT L TE + L +L
Sbjct: 132 FDL-----HSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQEL 186
Query: 444 RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
GI+ IS L EI Q++DR++V+ +G I GKT E + + +
Sbjct: 187 LATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDI 232
>pir||T34924 ABC transporter ATP binding protein - Streptomyces coelicolor
>gi|3218373|emb|CAA19625.1| (AL023862) ABC transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 505
Score = 263 bits (666), Expect = 3e-69
Identities = 164/500 (32%), Positives = 276/500 (54%), Gaps = 14/500 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ MSGI K +P GV AL GV+L V+ GE+H LLG+NGAGKSTL+++L G +P G I+
Sbjct: 8 LSMSGITKSFP-GVRALDGVDLDVQAGEVHCLLGQNGAGKSTLIKVLAGAHQPDTGTIRW 66
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G+EV+ P A+R GIA +YQ LV +V EN++L G + A
Sbjct: 67 RGEEVTLRSPIAAMRLGIATIYQELDLVEHLSVAENVHLGHEPTAAGFVVRGRAAKASTA 126
Query: 124 --MREVGF-EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
++ +G EV +V +L QQ V + +AL + +++++DEP++ L P EV LF+
Sbjct: 127 ALLKRLGHPEVDPGRLVGELSAAQQQIVSMARALSHDVRLIVMDEPSAALDPDEVDNLFR 186
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGE-VVGTVKTSEVSERELARMMVQRD 239
+ +L G+ V++I+H+L+E++ I DRVTVL+ G V G + E+ +M R+
Sbjct: 187 IVADLTADGVAVVYISHRLEEIRRIGDRVTVLKDGRAVAGGLPAESTPTSEVVALMTGRN 246
Query: 240 VVMEISKGKSTP--GNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRE 297
V + + P G +L V+ L + E+R GEI+G+AG+ G+G+ E
Sbjct: 247 VEYVFPERPAAPPTGEPVLSVKGL-----SRAGEFDRLDLEVRPGEIVGLAGLVGSGRSE 301
Query: 298 LAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVL 356
+ E + G R G++ + G+ + ++GL P+ R+ L++ +V NV +
Sbjct: 302 ILETVYGARKASTGQVLVDGRPLRPGSVRAAVRAGLGLAPEERKAQALLMLESVTRNVSV 361
Query: 357 TNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREP 416
+ +SR G I ++ + + + P++ LSGGNQQK ++ R ++R
Sbjct: 362 SAMSRFSRGGWIDRGAELGAAHKATRELSLRPDNPAVPVRTLSGGNQQKAVLARWLLRGC 421
Query: 417 KVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
+V+++ EPT+G+D+GA + + +L DE +LL+S+++ E+L L+DRV V+ EG+++
Sbjct: 422 RVLLLDEPTRGVDVGARAELYAVIRRLADEGLAVLLVSSEVPEVLGLADRVLVLREGRVV 481
Query: 477 SIGKTEEFTLEK-LGLLMGG 495
E + L L+M G
Sbjct: 482 HEAPARELDEHRVLDLVMEG 501
>gb|AAC04781.1| (AF036920) sugar transport ATP-binding protein homolog [Rhizobium
tropici]
Length = 508
Score = 263 bits (665), Expect = 3e-69
Identities = 163/496 (32%), Positives = 272/496 (53%), Gaps = 22/496 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VEM I K + L V +E G +H L+GENGAGKSTLMRIL G + T G I++
Sbjct: 5 VEMVSINKSF-GATKVLSNVQFSLERGSVHALMGENGAGKSTLMRILAGVYQQTAGRIRL 63
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLA--MLSINPGIKISDVEKLAK 121
G+EV+F P +A G++ V+Q FTL+P TV EN++L + I ++V + ++
Sbjct: 64 RGEEVTFRSPKEARLAGVSTVFQEFTLIPNLTVAENMFLGHEPRRADGSIDTAEVVERSR 123
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ + +V ++ IVE L V QQ VEI K L NA + I DEPT+ L +V LFK
Sbjct: 124 KLLADVFPQLDATAIVETLTVAQQQAVEIAKGLTSNADVFIFDEPTAALNSTDVAHLFKV 183
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+R+LK + V++I+H++ EV E+ D +TV++ G V T + + + + L MV R++
Sbjct: 184 IRDLKAQNKAVVYISHRMNEVFELCDTITVMKDGAWVKTARAEDFNLQTLVATMVGRELQ 243
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEA 301
G+ +L V L + D V F +R GEI+G+AG++G GQRE+ A
Sbjct: 244 SFFPPRAQAIGSAMLVVAGLRLNDHG-----PPVGFSVRTGEIIGLAGLEGQGQREIMRA 298
Query: 302 LAGIRIPEKGKIELLGKD-VTKLPAHERYKS----GLAYVPDSRR-VGLVLDMNVVENVV 355
+ G+ ++ D + + + S G+ ++P+ R+ GL L + + +N+
Sbjct: 299 VVGVEPAAAASVQRRRDDSMIDVNVSSGFSSAISAGIGFIPEDRKQEGLFLRLPIYDNIA 358
Query: 356 L-TNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIR 414
L L+R + ++W ++ ++V++ V + +P+ LSGGNQQKV++ R ++
Sbjct: 359 LGKQLNR--NMASVAW-RSISRVHDVIKSLRVAAADPASPVGKLSGGNQQKVLLCRWLLS 415
Query: 415 EPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGK 474
++V+ EPT+G+D+GA I K L D +++ S + E++ L D + V+++ K
Sbjct: 416 GVDILVIEEPTRGVDVGAKAEIYKLLRDFADRGGAVIVSSREHAELIGLCDNILVVHDKK 475
Query: 475 IM----SIGKTEEFTL 486
I+ ++ TEE L
Sbjct: 476 IVGQMPALDATEETIL 491
>emb|CAB62737.1| (AL133423) putative sugar-transport ATP binding protein
[Streptomyces coelicolor A3(2)]
Length = 525
Score = 256 bits (648), Expect = 3e-67
Identities = 174/503 (34%), Positives = 269/503 (52%), Gaps = 21/503 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT---KGE 60
+EM IVK +P GV AL V L V +GE+H + GENGAGKSTLM++L G + P +G+
Sbjct: 6 LEMRSIVKTFP-GVKALSDVTLTVRQGEVHAICGENGAGKSTLMKVLSG-VHPHGSYEGD 63
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG-IKISDVEKL 119
+ G+ F + + GI +++Q LVP ++ EN++L G I +D +
Sbjct: 64 VLFEGETCRFKDIRASEQHGIVIIHQELALVPYLSIAENIFLGNEHAKHGLINWNDTLRH 123
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
A E +R VG + V D+ VG QQ VEI KAL K+LILDEPT+ L + +L
Sbjct: 124 ATELLRRVGLDEHPETRVADIGVGKQQLVEIAKALSKKVKLLILDEPTAALNDEDSGKLL 183
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT--VKTSEVSERELARMMVQ 237
+ LKE+GIT I I+HKL E++ + D VT++R G + T VK +E +E + MV
Sbjct: 184 DLILQLKEQGITSIIISHKLNEIRRVADSVTIIRDGRSIETLDVKAAETTEDRIISGMVG 243
Query: 238 RDVVMEISKGKSTPGN------TILKVEDLWVKD--DRGLDAVKGVSFELREGEILGIAG 289
RD +E + TP L++ + V D+ V VS E+R GEI+GIAG
Sbjct: 244 RD--LENRFPERTPHQPEEGTAPALEIRNWTVHHPIDQQRKVVDDVSIEVRRGEIVGIAG 301
Query: 290 VQGNGQRELAEALAGIRIPEK--GKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVL 346
+ G G+ ELA ++ G G + G ++ E G+AYV + R+ GL L
Sbjct: 302 LMGAGRTELAMSVFGRTYGRHAGGTVLRDGHEIRTKTVPEAVGHGIAYVTEDRKHYGLNL 361
Query: 347 DMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKV 406
+ N+ LT L +V +G + ++ + + + + P+ LSGGNQQKV
Sbjct: 362 IDTINRNISLTALGKVSKRGVVDEHGERQVAEDYRKSMNIKAPTVFEPVGKLSGGNQQKV 421
Query: 407 MVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDR 466
++ + I P+V+++ EPT+G+D+GA I + +L E K ++ IS++L E+L + DR
Sbjct: 422 VLSKWIFAGPEVLILDEPTRGIDVGAKYEIYTVIDRLAAEGKAVVFISSELPELLGMCDR 481
Query: 467 VAVIYEGKIMSIGKTEEFTLEKL 489
+ + G++ E + E L
Sbjct: 482 IYTMAAGRLTGEFSRAEASQEAL 504
Score = 77.6 bits (188), Expect = 3e-13
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 9/224 (4%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEI--KPTKGEIKVFGKEVSFNGPWDAIREG 80
V+++V GEI G+ G GAG++ L ++G + G + G E+ +A+ G
Sbjct: 287 VSIEVRRGEIVGIAGLMGAGRTELAMSVFGRTYGRHAGGTVLRDGHEIRTKTVPEAVGHG 346
Query: 81 IAMVYQ---HFTLVPTFTVLENLYLAMLSINPGIKISDVE---KLAKEKMREVGFEVP-L 133
IA V + H+ L T+ N+ L L + D ++A++ + + + P +
Sbjct: 347 IAYVTEDRKHYGLNLIDTINRNISLTALGKVSKRGVVDEHGERQVAEDYRKSMNIKAPTV 406
Query: 134 NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVI 193
E V L G QQ+V + K + ++LILDEPT + E++ + L G V+
Sbjct: 407 FEPVGKLSGGNQQKVVLSKWIFAGPEVLILDEPTRGIDVGAKYEIYTVIDRLAAEGKAVV 466
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
FI+ +L E+ + DR+ + G + G +E S+ L R M +
Sbjct: 467 FISSELPELLGMCDRIYTMAAGRLTGEFSRAEASQEALMRQMTK 510
>pir||B72759 probable ABC transporter ATP-binding protein APE0063 - Aeropyrum
pernix (strain K1) >gi|5103451|dbj|BAA78972.1|
(AP000058) 492aa long hypothetical ABC transporter
ATP-binding protein [Aeropyrum pernix]
Length = 492
Score = 250 bits (632), Expect = 2e-65
Identities = 146/470 (31%), Positives = 252/470 (53%), Gaps = 20/470 (4%)
Query: 12 VYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFN 71
VYP GV AL+GV G + LLGENGAGK+TL++ + G +KP KG I V G E+
Sbjct: 13 VYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPK 72
Query: 72 GPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEV 131
GP D++R GI M Q+ + P E+L + ++ + + E +G +
Sbjct: 73 GPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNI 132
Query: 132 PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGIT 191
+ + ++ +QR+E+IKAL L ++ ++LDEPT+ LTP E + + L G
Sbjct: 133 DPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAA 192
Query: 192 VIFITHKLKEVKEITDRVTVLRRG----EVVGTVKTSEVSERELARMMVQRDVVMEISKG 247
V+ +TH++ E E DR+ +LR+G E T EV++ ++ R+ +
Sbjct: 193 VLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMFGEVLAPRE--PKTFTA 250
Query: 248 KSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRI 307
++ G +L V+ + + ++ E+R+GE++G+AGV GNGQ EL E + G+R
Sbjct: 251 ATSTGRPVLSVDRVSLP-----PRLRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRK 305
Query: 308 PEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR 367
P KG+I + G DVT+ P R + GL +P+ R+G L V + N++ +H R
Sbjct: 306 PAKGRILIAGVDVTRAPPLARRRLGLGVIPE-ERLGHAL---VPGESIAFNIALSIHTAR 361
Query: 368 ----ISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSE 423
+ W ++ E++ + S + + LSGGN Q++++ RE+ +P+++V
Sbjct: 362 DGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDELSGGNMQRLVLARELWLKPRLLVAMN 421
Query: 424 PTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEG 473
P GLD+ + + + ++++ ER G+L+I DLD +L++S+++ V G
Sbjct: 422 PAAGLDLEGQQAVAE-MMRMSSERGGVLVIDEDLDFLLRVSNKIYVASGG 470
>gi|10954721 hypothetical ABC-transporter gene~similar to teuA gene
[Agrobacterium rhizogenes] >gi|8918721|dbj|BAA97786.1|
(AB039932) hypothetical ABC-transporter gene~similar to
teuA gene [Agrobacterium rhizogenes]
>gi|10567385|dbj|BAB16194.1| (AP002086) hypothetical
ABC-transporter gene~similar to teuA gene [Agrobacterium
rhizogenes]
Length = 498
Score = 250 bits (631), Expect = 3e-65
Identities = 155/487 (31%), Positives = 272/487 (55%), Gaps = 25/487 (5%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EMS I K + G +AL V+L++ G +H L+GENGAGKSTLM+IL G +P GEI
Sbjct: 5 IEMSNISKSF-GGSLALDRVSLELLPGSVHALMGENGAGKSTLMKILAGVHQPDSGEIFK 63
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G +++F P +A+ GI+ V+Q TL+ T+ EN++L + + D +++ E
Sbjct: 64 NGHKIAFLNPKEALDFGISTVFQEMTLLANLTIAENMFLGREPVTRFGTV-DYKRMNAET 122
Query: 124 ---MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
++E+ ++ +V +L + +Q VEI + +A I ILDEPT+ L +V+ L K
Sbjct: 123 GKALKELSLDLDPRTLVSNLTIAERQFVEIAHGIKADASIFILDEPTAALNAADVEILNK 182
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+R L++ G +++I+H++ E+ +I D VTVL+ G+++GT SE++ L MMV R++
Sbjct: 183 HIRRLRDAGKALVYISHRMDEIFQICDTVTVLKDGKLIGTRPLSEMTPTSLIAMMVGREL 242
Query: 241 V-MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELA 299
+ ++ S G +L ++ + + K S + +GEI+ +AG++G GQ++L
Sbjct: 243 KDLFPARNGSASGEPMLDIKHFKIG-----ASTKPFSLHVCKGEIVALAGLEGQGQQKLL 297
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHER-----YKSGLAYVPDSRR-VGLVLDMNVVEN 353
+L G P G I L GK + +E + G+ ++P+ R+ GL L++ + N
Sbjct: 298 RSLVGKFQPFSGTITLNGKSLALPVPNENGVRKLQQMGVGFIPEDRKEEGLFLNLPIAHN 357
Query: 354 VVLTNLSRVLHKGRISWDKANE---MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGR 410
+ + LH R + A + + +++ V + AP+ LSGGNQQKV++GR
Sbjct: 358 IEI-----ALHSARAGFSPAKNYRTLVADTIKRLNVRTINASAPVGALSGGNQQKVLLGR 412
Query: 411 EIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVI 470
I ++++ EPT+G+DIGA I K L +L++S + E++ L DR+ V+
Sbjct: 413 YIAANLDILLIEEPTRGVDIGAKSEIYKLLRDFTQNGGAVLVLSRETVELIGLCDRIYVV 472
Query: 471 YEGKIMS 477
+ +++
Sbjct: 473 HGDTVVA 479
Score = 88.9 bits (217), Expect = 1e-16
Identities = 60/225 (26%), Positives = 109/225 (47%), Gaps = 4/225 (1%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ VS EL G + + G G G+ L + LAG+ P+ G+I G + L E
Sbjct: 19 ALDRVSLELLPGSVHALMGENGAGKSTLMKILAGVHQPDSGEIFKNGHKIAFLNPKEALD 78
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
G++ V + + L+ ++ + EN+ L V G + + + N T + +++ + L
Sbjct: 79 FGISTV--FQEMTLLANLTIAENMFLGR-EPVTRFGTVDYKRMNAETGKALKELSLDLDP 135
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
+ + +L+ +Q V + I + + ++ EPT L+ E + K + +LRD K +
Sbjct: 136 -RTLVSNLTIAERQFVEIAHGIKADASIFILDEPTAALNAADVEILNKHIRRLRDAGKAL 194
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+ IS +DEI Q+ D V V+ +GK++ E T L +M G
Sbjct: 195 VYISHRMDEIFQICDTVTVLKDGKLIGTRPLSEMTPTSLIAMMVG 239
>sp|P08531|ARAG_ECOLI L-ARABINOSE TRANSPORT ATP-BINDING PROTEIN ARAG
>gi|78318|pir||S01074 L-arabinose transport ATP-binding
protein araG - Escherichia coli
>gi|40946|emb|CAA29477.1| (X06091) araG gene product (AA
1 - 504) [Escherichia coli] >gi|1736558|dbj|BAA15720.1|
(D90831) AraG protein [Escherichia coli]
>gi|1736563|dbj|BAA15724.1| (D90832) AraG protein
[Escherichia coli] >gi|1788210|gb|AAC74970.1| (AE000283)
ATP-binding component of high-affinity L-arabinose
transport system [Escherichia coli K12]
Length = 504
Score = 247 bits (623), Expect = 3e-64
Identities = 155/480 (32%), Positives = 261/480 (54%), Gaps = 26/480 (5%)
Query: 8 GIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKE 67
GI K +P GV AL ++ G++H L+GENGAGKSTL++IL G PT G + + G+E
Sbjct: 12 GIGKTFP-GVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPTTGSVVINGQE 70
Query: 68 VSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGI-KISDVEKLAKEKMRE 126
+SF+ A+ G+A++YQ LVP TV EN+YL L GI S + A +++
Sbjct: 71 MSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGLQLKH 130
Query: 127 VGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK 186
+G ++ + ++ L +G Q VEI KAL NAKI+ DEPTS L+ E+ LF+ +R L+
Sbjct: 131 LGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREIDNLFRVIRELR 190
Query: 187 ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT-VKTSEVSERELARMMVQRDVVMEIS 245
+ G +++++H+++E+ ++D +TV + G V T +V L + MV RD+
Sbjct: 191 KEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAMVGRDIGDIYG 250
Query: 246 KGKSTPGNTILKVEDLWVKDDRGLDAVKG------VSFELREGEILGIAGVQGNGQRELA 299
+ G L+ LDAVK +S +R GEI+G+ G+ G G+ EL
Sbjct: 251 WQPRSYGEERLR-----------LDAVKAPGVRTPISLAVRSGEIVGLFGLVGAGRSELM 299
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLTN 358
+ + G G++ + + + +G+ P+ R+ G++ +V +N+ ++
Sbjct: 300 KGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMMLCPEDRKAEGIIPVHSVRDNINISA 359
Query: 359 LSRVLHKGRI---SWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIRE 415
+ + G + W++ N + + + + I +LSGGNQQK ++GR + E
Sbjct: 360 RRKHVLGGCVINNGWEENN--ADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEE 417
Query: 416 PKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKI 475
KVI++ EPT+G+D+GA I + L + +L S+DL E+L ++DR+ V+ EG+I
Sbjct: 418 MKVILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLFASSDLPEVLGVADRIVVMREGEI 477
Score = 88.9 bits (217), Expect = 1e-16
Identities = 58/216 (26%), Positives = 111/216 (50%), Gaps = 8/216 (3%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIREGIA 82
++L V GEI GL G GAG+S LM+ ++G + T G++ + + + P AI G+
Sbjct: 275 ISLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM 334
Query: 83 MVYQHFT---LVPTFTVLENLYLAMLS--INPGIKISD--VEKLAKEKMREVGFEVP-LN 134
+ + ++P +V +N+ ++ + G I++ E A +R + + P
Sbjct: 335 LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADHHIRSLNIKTPGAE 394
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIF 194
+++ +L G QQ+ + + L K+++LDEPT + E++ + L +G+ V+F
Sbjct: 395 QLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLF 454
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
+ L EV + DR+ V+R GE+ G + + ER+
Sbjct: 455 ASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQ 490
>emb|CAB66211.1| (AL136502) putative ABC transporter, ATP-binding component
(fragment). [Streptomyces coelicolor A3(2)]
Length = 434
Score = 246 bits (621), Expect = 5e-64
Identities = 149/425 (35%), Positives = 238/425 (55%), Gaps = 15/425 (3%)
Query: 65 GKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK- 123
G V F+GP DA GIA++YQ TL P ++ EN+++ P + ++ A
Sbjct: 2 GAPVVFHGPGDARDAGIAVIYQEPTLFPDLSIAENIFMGR---QPRRALGRIDHKATHDA 58
Query: 124 ----MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
M +G E+ + L + QQ VEI KAL +A++LI+DEPT+ LT EV LF
Sbjct: 59 TAALMLRLGVELDPDRPARGLSIADQQIVEIAKALSFDARVLIMDEPTAALTGSEVARLF 118
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+R L+++G V+FI+H+L+E+ I RVT LR G + + ++E +L R MV RD
Sbjct: 119 GVVRTLRDQGAAVLFISHRLEEIFHICARVTTLRDGAWIASEPLEGMTEDDLVRRMVGRD 178
Query: 240 VVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELA 299
+ K + TPG L V L + VSFE+R GEI+ +AG+ G G+ E+A
Sbjct: 179 LDELYPKQEVTPGERALSVRRLTRE-----GVFTDVSFEVRRGEIVALAGLVGAGRTEVA 233
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVLTN 358
A+ G+ + G++E+ GK + +GLA VP+ RR GLV+DM++ N+ LT
Sbjct: 234 RAVFGVDRWDAGEVEVDGKPLVNGAPSTAMAAGLALVPEDRRAQGLVMDMSIERNIGLTG 293
Query: 359 LSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
L + G + + + K +V + + LSGGNQQKV++ + + PKV
Sbjct: 294 LRTTVKAGLVDRGAERSRSLDWAVKLQVKYARIADTVATLSGGNQQKVVLAKWLATGPKV 353
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMS- 477
++V EPT+G+D+G + + L +L + +L+IS+DL E+L ++DRV V++EG++ +
Sbjct: 354 LIVDEPTRGIDVGTKAEVHRLLSQLAADGVAVLMISSDLPEVLGMADRVLVMHEGRLTAE 413
Query: 478 IGKTE 482
I +T+
Sbjct: 414 ISRTD 418
Score = 81.5 bits (198), Expect = 2e-14
Identities = 64/216 (29%), Positives = 106/216 (48%), Gaps = 13/216 (6%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIREGIA 82
V+ +V GEI L G GAG++ + R ++G + GE++V GK + P A+ G+A
Sbjct: 209 VSFEVRRGEIVALAGLVGAGRTEVARAVFGVDRWDAGEVEVDGKPLVNGAPSTAMAAGLA 268
Query: 83 MVYQHFT---LVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLN----- 134
+V + LV ++ N+ L L +K V++ A E+ R + + V L
Sbjct: 269 LVPEDRRAQGLVMDMSIERNIGLTGLRTT--VKAGLVDRGA-ERSRSLDWAVKLQVKYAR 325
Query: 135 --EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITV 192
+ V L G QQ+V + K L K+LI+DEPT + E+ + L L G+ V
Sbjct: 326 IADTVATLSGGNQQKVVLAKWLATGPKVLIVDEPTRGIDVGTKAEVHRLLSQLAADGVAV 385
Query: 193 IFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+ I+ L EV + DRV V+ G + + ++ +E
Sbjct: 386 LMISSDLPEVLGMADRVLVMHEGRLTAEISRTDATE 421
>emb|CAB42544.1| (AJ238879) putative ABC-transporter, ATP-binding subunit [Haloferax
volcanii]
Length = 313
Score = 223 bits (563), Expect = 3e-57
Identities = 119/294 (40%), Positives = 185/294 (62%), Gaps = 5/294 (1%)
Query: 207 DRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPGNTILKVEDLWVKDD 266
DRVTVLR GE VGTV TS+VS +LA MMV R+V+ + + + PG +L+ ++ DD
Sbjct: 1 DRVTVLRDGENVGTVSTSDVSRADLAEMMVGREVLFTVDRERVAPGEPVLRARNVSATDD 60
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
RG++A+ V +R GE++GIAGV GNGQ+ELAE +AG+R G++ + G+D+T
Sbjct: 61 RGIEALSNVDLTVRRGEVVGIAGVSGNGQKELAEVIAGLRTVSAGELTVDGRDLTNASPR 120
Query: 327 ERYKSGLAYVPDSR-RVGLVLDMNVVENVVLTNLSRVLHKGRISWD--KANEMTNEVVEK 383
+G+++VP+ R R G D++V+ N + + ++ D + +VE
Sbjct: 121 TFIDNGVSFVPEDRNRYGSAGDLSVMHNAAMKDFREDRFGSGVTLDYGELRAHAEALVEA 180
Query: 384 FEV--LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLL 441
F+V + T A LSGGN QK+++ REI R+P ++V ++PT+G+D+GA E IR+ +L
Sbjct: 181 FDVRGVHDVTDATAGDLSGGNLQKLILAREISRDPDLLVANQPTRGVDVGAIESIREAIL 240
Query: 442 KLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
R E G++L+S DLDEI+ LSDR+ V+YEG+++ E+ E++GL M G
Sbjct: 241 DQRTEGTGVVLLSEDLDEIIDLSDRILVVYEGEVVYETTPEDADRERIGLEMTG 294
>gb|AAC45344.1| (AF100324) putative ATPase [Mycoplasma fermentans]
Length = 600
Score = 222 bits (559), Expect = 9e-57
Identities = 133/321 (41%), Positives = 195/321 (60%), Gaps = 11/321 (3%)
Query: 1 MTAVEMSGIVKVYPDGVV-ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
M A+E I K + GV+ A + +N+++++G IH L+GENGAGKSTL+ IL+G +P G
Sbjct: 1 MNAIEFINISKSF--GVIKANQDINIQIKKGTIHALIGENGAGKSTLLSILFGLYEPDHG 58
Query: 60 EIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE-- 117
IKV GKEV N P DA GI MV+QHF LV +T L+N+ L S + K D +
Sbjct: 59 IIKVNGKEVLINNPNDANNLGIGMVHQHFKLVGAYTNLQNIILGAESESKTFKTLDYKPS 118
Query: 118 -KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
K K R LN+ V QQ+VEI+K L +++ILI DEPT+VLT E++
Sbjct: 119 IKKIKTIQRLFNLNFDLNKDTGTESVSTQQKVEIMKMLYRDSEILIFDEPTAVLTDEEIQ 178
Query: 177 ELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMV 236
L +T + K +G T+IFI+HKLKEVK + D TV+R G+V G + + S E+A MV
Sbjct: 179 GLLETFKLFKSQGKTIIFISHKLKEVKAVADYATVIRHGKVTGNFEVANTSIEEMANRMV 238
Query: 237 QRDVVMEISKGKST--PGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNG 294
++VM ++ +T+L++E++ K G ++K ++ ++ GEIL IAGV+GNG
Sbjct: 239 GDNIVMAQNQSLDVFEDKDTVLELENVSTK---GTKSLKNLNLKVHAGEILAIAGVEGNG 295
Query: 295 QRELAEALAGIRIPEKGKIEL 315
Q++L ++GI P KG + L
Sbjct: 296 QQDLEYVVSGIVKPTKGNVYL 316
Score = 102 bits (253), Expect = 7e-21
Identities = 63/164 (38%), Positives = 97/164 (58%), Gaps = 4/164 (2%)
Query: 334 AYVP-DSRRVGLVLDMNVVENVVLTNLSRVLHK--GRISWDKANEMTNEVVEKFEVL-LS 389
+++P D + GL LD N+ N +L L ++ G I + T EV++K++V
Sbjct: 425 SFIPRDRHKHGLALDYNIKNNTILRRLWDPKYQTFGFIKPKAVKKETAEVIDKYDVRGAR 484
Query: 390 STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
+ + LSGGN QK +VGRE+ I++ +PT+GLD+GA + I + +LK + E K
Sbjct: 485 EGYSTSRSLSGGNHQKFIVGREMNSPHDFILILQPTRGLDVGAIKNIHERILKEKAEGKA 544
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLM 493
ILLIS +LDE+L L+D +AVI EG+I E T +++GL M
Sbjct: 545 ILLISYELDEVLSLADTIAVINEGEIRLSKPARELTRKEIGLYM 588
>sp|P39326|YTFR_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN PPA-FBP
INTERGENIC REGION >gi|1361180|pir||S56454 hypothetical
ABC transporter (ppa-fbp intergenic region) -
Escherichia coli >gi|537070|gb|AAA97125.1| (U14003)
ORF_o417a [Escherichia coli] >gi|1790675|gb|AAC77185.1|
(AE000494) putative ATP-binding component of a transport
system [Escherichia coli K12]
Length = 417
Score = 209 bits (526), Expect = 7e-53
Identities = 127/352 (36%), Positives = 202/352 (57%), Gaps = 7/352 (1%)
Query: 8 GIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKE 67
G+ K +P GV AL V+ + GEI LLGENGAGKSTL++ L G +G I + G+
Sbjct: 14 GLSKFFP-GVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQA 72
Query: 68 VSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGI-KISDVEKLAKEKMRE 126
+S A + GI VYQ L+P +V +NL++ G+ + ++EK A E M
Sbjct: 73 ISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRKEMEKRATELMAS 132
Query: 127 VGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK 186
GF + + E + V +QQ V I +A+ L+AK+LILDEPT+ L EV+ LF +R L+
Sbjct: 133 YGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVELLFDLMRQLR 192
Query: 187 ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISK 246
+RG+++IF+TH L +V +++DR+TVLR G VG +T E+ + EL +MM+ R++ +
Sbjct: 193 DRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMMLGREL---DTH 249
Query: 247 GKSTPGNTILKVEDLWVKDDRG-LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGI 305
G T+L + + + G + E+R GEI+G+AG+ G+G+ E AE + GI
Sbjct: 250 ALQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLEVRPGEIVGLAGLLGSGRTETAEVIFGI 309
Query: 306 RIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV-GLVLDMNVVENVVL 356
+ + G + GK H+ G+ + P+ R+ G++ +V EN++L
Sbjct: 310 KPADSGTALIKGKPQNLRSPHQASVLGIGFCPEDRKTDGIIAAASVRENIIL 361
Score = 88.9 bits (217), Expect = 1e-16
Identities = 65/241 (26%), Positives = 119/241 (48%), Gaps = 7/241 (2%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
IL+ E L K G+ A+ V F LR GEI+ + G G G+ L +AL G+ ++G I
Sbjct: 9 ILRTEGL-SKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIW 67
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
L G+ ++ + G+ V + V L+ +M+V +N+ + + G + +
Sbjct: 68 LEGQAISPKNTAHAQQLGIGTV--YQEVNLLPNMSVADNLFIGREPKRF--GLLRRKEME 123
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
+ E++ + L + P+ S QQ V + R I KV+++ EPT LD E
Sbjct: 124 KRATELMASYGFSLD-VREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVE 182
Query: 435 FIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEF-TLEKLGLLM 493
+ + +LRD ++ ++ LD++ Q+SDR+ V+ G + +T E +E + +++
Sbjct: 183 LLFDLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMML 242
Query: 494 G 494
G
Sbjct: 243 G 243
>gb|AAD37310.1|AF135170_1 (AF135170) ribose ABC transporter [Yersinia pestis]
Length = 344
Score = 192 bits (483), Expect = 7e-48
Identities = 119/326 (36%), Positives = 182/326 (55%), Gaps = 5/326 (1%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G +AL VN V G+++ ++GENGAGKSTLM+IL G + T G+I + G++VS +
Sbjct: 20 GTLALDSVNYTVYRGKVNVIIGENGAGKSTLMKILAGVQQQTSGQIYLNGQKVSIANTRE 79
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDV---EKLAKEKMREVGFEVP 132
A GI MV+Q L V EN++L I G+K + E++ ++ M + +
Sbjct: 80 AAALGIGMVHQELNLSENLNVAENIFLGR-EIQHGLKPINQAAQERVTEQLMVRLDQVIS 138
Query: 133 LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITV 192
E V +L VG QQ +EI KAL A ILILDEPTS L+ EV LF+ +R L +G+++
Sbjct: 139 PQEKVSNLKVGQQQLIEIAKALAEQADILILDEPTSALSKTEVDVLFRVIRELTRQGVSI 198
Query: 193 IFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPG 252
++I+H+L+E+ I D +T+LR G ++ + R M+ D V + T G
Sbjct: 199 VYISHRLEELMAIGDYITILRDGRFQAEAAVKDIDVPWIVREMLGSDPVSSFLRPGRTFG 258
Query: 253 NTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGK 312
+++VED+ + ++ G V VS +R GEI+GI G+ G G+ EL E L G + G
Sbjct: 259 EPMMEVEDVTLINESGNTVVNHVSLHVRAGEIVGIYGLMGAGRTELFECLLGTQQNYLGT 318
Query: 313 IELLGKDV-TKLPAHERYKSGLAYVP 337
+ L G + K ER + G++ VP
Sbjct: 319 VRLNGTVMNAKTSTAERIRFGMSLVP 344
Score = 72.2 bits (174), Expect = 1e-11
Identities = 52/226 (23%), Positives = 111/226 (49%), Gaps = 11/226 (4%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+++ ED+ ++ G A+ V++ + G++ I G G G+ L + LAG++ G+I
Sbjct: 8 VMRAEDISMRFP-GTLALDSVNYTVYRGKVNVIIGENGAGKSTLMKILAGVQQQTSGQIY 66
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
L G+ V+ E G+ V + + L ++NV EN+ L R + G ++A
Sbjct: 67 LNGQKVSIANTREAAALGIGMV--HQELNLSENLNVAENIFL---GREIQHGLKPINQAA 121
Query: 375 EMTNEVVEKFEVLLSSTKAP---IKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIG 431
+ V E+ V L +P + +L G QQ + + + + + ++++ EPT L
Sbjct: 122 Q--ERVTEQLMVRLDQVISPQEKVSNLKVGQQQLIEIAKALAEQADILILDEPTSALSKT 179
Query: 432 ATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMS 477
+ + + + +L + I+ IS L+E++ + D + ++ +G+ +
Sbjct: 180 EVDVLFRVIRELTRQGVSIVYISHRLEELMAIGDYITILRDGRFQA 225
>sp|P55570|Y4MK_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN Y4MK
>gi|2182528|gb|AAB91774.1| (AE000085) Y4mK [Rhizobium
sp. NGR234]
Length = 497
Score = 185 bits (466), Expect = 7e-46
Identities = 150/503 (29%), Positives = 251/503 (49%), Gaps = 29/503 (5%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
V + + K Y V L+GV+ V GEIH LLG NGAGKSTL+R++ G GE+ V
Sbjct: 9 VSVRSLTKSY-GATVVLKGVDFSVARGEIHALLGGNGAGKSTLIRVITGTAAKDGGEL-V 66
Query: 64 FGKEVSFNGPWDAI-REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
F ++++ N +A R +A+V+Q L+P TV E+ +A+ G ++ D +
Sbjct: 67 F-RDMAGNILTEADGRRKVAVVHQELALLPHLTVAES--IALPHFRKGSRVYDGRTAGSQ 123
Query: 123 KMREVGF------EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
+ LN +V DL + Q VEI +AL A++++LDEPT+ LT E +
Sbjct: 124 AYAALSMIDRDFAGTALNRLVGDLSLHEGQMVEIARALSSGAELILLDEPTANLTAAETE 183
Query: 177 ELFKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGE-VVGTVKTSEVSERELARM 234
LF LR L + G++V+F++H++KE+++I +++R G VVG V T+E+S+ +
Sbjct: 184 RLFGVLRKLTRGNGLSVVFVSHRMKEIRQIAHVCSIIRDGRTVVGNVPTAELSDLAIIEH 243
Query: 235 MVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNG 294
M Q + P ++ D+ A G S L+ G ILG+AG G
Sbjct: 244 MGQAQATAVAHSARPAPVASL--------SDEPLTIAETGFSVTLQPGTILGVAGAPA-G 294
Query: 295 QRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVP-DSRRVGLVLDMNVVEN 353
L AL G + + G E + G +V D G++ + +++N
Sbjct: 295 PETLIAALIGAAHERRWTVTRAGWPDRFRSPREAARLGAGFVTGDRSHRGILHSLPIIDN 354
Query: 354 VVLTNLSRVLHKGRISWDKANEM-TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREI 412
V+ SR +G + K E+ ++++ +V S LSGG QQK+++ R +
Sbjct: 355 VL---ASRRATRGSLFATKREEVECLDLMQALKVKAGSLWHLPNTLSGGTQQKLLLARWL 411
Query: 413 IREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRV-AVIY 471
+++V+ EPT+G+DIG I + + + I+ ST+ E+L++ D+V A
Sbjct: 412 NVPSRLLVLEEPTRGVDIGTKREIYQLIRDMATTGTAIVWWSTENAELLEICDQVLAFDT 471
Query: 472 EGKIMSIGKTEEFTLEKLGLLMG 494
EG+ + + +E + +KL L G
Sbjct: 472 EGRSSGVIERDELSEDKLATLTG 494
>dbj|BAA15193.1| (D90793) Ribose transport ATP-binding protein RbsA. [Escherichia
coli]
Length = 327
Score = 179 bits (450), Expect = 5e-44
Identities = 109/317 (34%), Positives = 180/317 (56%), Gaps = 24/317 (7%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
GV L+G++ + +GE+H LLG NGAGKSTLM+I+ G G +++ G P
Sbjct: 23 GVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVH 82
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNE 135
A + GI +V Q L P+ ++ EN+ + K ++K+ K + +G + L+
Sbjct: 83 AHQLGIYLVPQEPLLFPSLSIKENILFGLAK-----KQLSMQKM-KNLLAALGCQFDLHS 136
Query: 136 IVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFI 195
+ L V +Q VEI++ LM +++ILILDEPT+ LTP E + LF L+ L G+ ++FI
Sbjct: 137 LAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQELLATGVGIVFI 196
Query: 196 THKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR----------MMVQRDVVMEI- 244
+HKL E+++I DR++V+R G + + KTSE+S ++ + + + + +E+
Sbjct: 197 SHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAITPAVREKSLSASQKLWLELP 256
Query: 245 -SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALA 303
++ + G +L +E+L + + VS L GEILG+AG+ G G+ ELAE L
Sbjct: 257 GNRPQHAAGTPVLTLENLTG------EGFRNVSLTLNAGEILGLAGLVGAGRTELAETLY 310
Query: 304 GIRIPEKGKIELLGKDV 320
G+R G+I L GK++
Sbjct: 311 GLRTLRGGRIMLNGKEI 327
Score = 89.3 bits (218), Expect = 9e-17
Identities = 60/226 (26%), Positives = 114/226 (49%), Gaps = 12/226 (5%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K G++ +KG+ F L +GE+ + G G G+ L + +AGI + G +E+ G + +L
Sbjct: 19 KQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRL 78
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
++ G+ VP L +++ EN++ L K ++S K + + +
Sbjct: 79 TPVHAHQLGIYLVPQEPL--LFPSLSIKENILFG-----LAKKQLSMQKMKNLLAALGCQ 131
Query: 384 FEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
F++ + L ++Q V + R ++R+ +++++ EPT L TE + L +L
Sbjct: 132 FDL-----HSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQEL 186
Query: 444 RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
GI+ IS L EI Q++DR++V+ +G I GKT E + + +
Sbjct: 187 LATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDI 232
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 162 bits (405), Expect = 1e-38
Identities = 148/520 (28%), Positives = 243/520 (46%), Gaps = 79/520 (15%)
Query: 15 DGVV-ALRGVNLKVEEGEIHGLLGENGAGKST----LMRILYGEIKPTKGEIKVFGKEVS 69
DGVV A++ V+ + GE ++GE+G+GKS LM++L + +F E
Sbjct: 20 DGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNARIHPESSIMFEGEEL 79
Query: 70 FNGPWDAIR----EGIAMVYQHFTLVPTFTVLENLYLAMLSINP----GIKISDV----- 116
N +R + I M++Q M S+NP G+++++
Sbjct: 80 LNKTDTQMRRIRGDRIGMIFQE---------------PMTSLNPYMRVGVQVAEAIRCHR 124
Query: 117 ---EKLAKEKMREVGFEVPL-------NEIVEDLPVGIQQRVEIIKALMLNAKILILDEP 166
+ AK+++ E+ V L + + G QR+ I AL+ ILI DEP
Sbjct: 125 NVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184
Query: 167 TSVLTPIEVKELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSE 225
T+ L E+ + ++ ++ G+ ++FITH L VK + DRV V+ +G+VV T +
Sbjct: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244
Query: 226 V---SERELARMMVQRDVVMEISKGKSTP----GNTILKVEDLWVK----------DDRG 268
+ E + RM++ I KG P +LK ED+ VK ++
Sbjct: 245 LFLQPEHDYTRMLIN-----SIPKGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQY 299
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
+AVKG+S EL++GE LGI G G+G+ L AL G+ +P G+I G+D L +R
Sbjct: 300 FEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGL-LPSTGQIAFKGQDFRALSEKQR 358
Query: 329 YKSGLAYVPDSRRV-----GLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
LA D + V G + V ++ L ++H+ IS + + +E+
Sbjct: 359 ----LALKKDIQMVFQDPYGSLSPRMTVGEIITEGL--LVHQPHISKLERMQRARRALEE 412
Query: 384 FEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
+ +S SGG +Q++ + R +I EP I++ EPT LD + + L ++
Sbjct: 413 VRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEI 472
Query: 444 RDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
+ R G L IS DL + LSDRV V+ +G++M G E
Sbjct: 473 QKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAE 512
Score = 79.6 bits (193), Expect = 7e-14
Identities = 67/255 (26%), Positives = 123/255 (47%), Gaps = 30/255 (11%)
Query: 253 NTILKVEDLWVK---DDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPE 309
N +L+V +L V +D +DAVK VSF++R GE L I G G+G+ AL + +P+
Sbjct: 4 NPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQL-LPK 62
Query: 310 KGKI-----------ELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTN 358
+I ELL K T++ + G+ + + +N V +
Sbjct: 63 NARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEP------MTSLNPYMRVGVQV 116
Query: 359 LSRVLHKGRISWDKANEMTNEVVEKFEVL-LSSTKAPIK----HLSGGNQQKVMVGREII 413
+ +S ++A + V+E F+++ L K + SGG Q++M+ +I
Sbjct: 117 AEAIRCHRNVSQNQAKQ---RVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALI 173
Query: 414 REPKVIVVSEPTQGLDIGATEFIRKTLLKLR-DERKGILLISTDLDEILQLSDRVAVIYE 472
EP +++ EPT LD+ + + + +++ + IL I+ DL + ++DRV V+ +
Sbjct: 174 NEPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCK 233
Query: 473 GKIMSIGKTEEFTLE 487
G ++ G TE+ L+
Sbjct: 234 GDVVEQGSTEQLFLQ 248
>pir||D69159 methyl coenzyme M reductase system, component A2 homolog -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621521|gb|AAB84960.1| (AE000829) methyl coenzyme M
reductase system, component A2 homolog [Methanobacterium
thermoautotrophicum]
Length = 480
Score = 155 bits (387), Expect = 1e-36
Identities = 132/501 (26%), Positives = 240/501 (47%), Gaps = 63/501 (12%)
Query: 1 MTAVEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
M A+ + G+ YP+ +ALR V+L+V+ GE + G +G+GKSTL R + I G
Sbjct: 1 MDAILLDGVSYRYPNQERLALRDVSLRVKRGESVFITGRSGSGKSTLARAVTAVIPSMMG 60
Query: 60 -----EIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG-IKI 113
++V G++ P D + + V+Q+ FT+ N + +S+ P +++
Sbjct: 61 GEMDGTVRVMGRDTDSLTPGDLAAD-VGYVFQN-PESQFFTLNVN---SEVSLGPDTLQL 115
Query: 114 SDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPI 173
E+ ++ +R VG E +E V +L G +QRV I L ++ +IL++DEPTS L
Sbjct: 116 DKREERVEDALRRVGMEHKRHESVFNLSEGEKQRVAIASQLSMSPEILLMDEPTSNLDQG 175
Query: 174 EVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
+LF L+NL+++ T+I I H+ V E+ DRV V+ G +V T + + E
Sbjct: 176 STDDLFSILKNLRDK--TLILIDHRTYRVPEVFDRVVVMDEGMIVEETDTDNLLDPEFRE 233
Query: 234 MMVQRD----------------VVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSF 277
R ++S T + +L+V + + +G + GV+
Sbjct: 234 RYGLRSPSPGFNQRSCGGRGLRPFFQVSTHPETKQDPVLRVMN--ISHTQGDFRLDGVNL 291
Query: 278 ELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKD--VTKLPAHERYKSGLAY 335
+L GE+LG+ G G+G+ LA + G+ PE G+I + G V + P H+
Sbjct: 292 DLWRGEVLGLTGPNGSGKTTLARLIVGLIEPEMGEIRVEGTAGLVMQDPDHQ-------- 343
Query: 336 VPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPI 395
L M+ V+ + L D ++ +++E ++ + P
Sbjct: 344 ----------LFMDTVKREITFGLD----------DYSDGDVEDLLETMKLHQLMERHP- 382
Query: 396 KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLIST 455
LSGG +Q+ ++ + R+P +I++ EPT G+D+ + + + KL+ ++LIS
Sbjct: 383 HSLSGGEKQRTLISVYLFRKPDLIIMDEPTTGMDLDNMKRLAGWIGKLKGMGVAMILISH 442
Query: 456 DLDEILQLSDRVAVIYEGKIM 476
DL+ + ++DR ++ G ++
Sbjct: 443 DLEFLQMVADRTIMMDNGALV 463
>pir||D64507 methyl coenzyme M reductase system, component A2 homolog -
Methanococcus jannaschii
Length = 558
Score = 149 bits (373), Expect = 6e-35
Identities = 140/560 (25%), Positives = 253/560 (45%), Gaps = 104/560 (18%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M V++ + K Y D AL V+ + ++GEI G++G++GAGKSTL+RIL G + +GE
Sbjct: 4 MITVKVKNLTKKYGD-FKALDKVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGE 62
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGI--------K 112
+++ G++ D +E A+ Q + V+ N+ + +I +
Sbjct: 63 VEILGRK-------DNFKEITAIHLQRNFALWAEPVINNIIRKLYAIRNNADEQLPLEEE 115
Query: 113 ISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRV----EIIKALMLNAKILILDEPTS 168
+ EK A E ++ VG E + L G +QR+ +I K +L+LDEP +
Sbjct: 116 WEEYEKTAIEILKLVGLEHKKDAFANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPAT 175
Query: 169 VLTPIEVKELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVS 227
+ P ++L ++N++++ GITVI +H + + + DR+ +L G+V EV
Sbjct: 176 MACPASKQKLLDVIKNIRDKLGITVIITSHLPEIHRYLCDRLILLENGKVKMDGDVEEVL 235
Query: 228 ERELARMMVQRDVVMEISKGKSTPG---NTILKVEDL----WVKDDRGLDAVKGVSFELR 280
L +M K TP N I++V ++ +V ++ VSF+++
Sbjct: 236 NEFLKKMK---------PPYKRTPNIKDNAIIQVRNVSKRYYVVHGGETLNLRNVSFDVK 286
Query: 281 EGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVT------------------- 321
EGEIL I G G G+ + +AG+ +P++GKI + G D+T
Sbjct: 287 EGEILSIIGPSGVGKTVIMRLMAGLELPDEGKIIVDGIDITNYGWERIELRKRIGIMHQE 346
Query: 322 -KLPAHERYKSGLAY-----------------------------------VPDSRRVGLV 345
LP ++ ++ L Y VP+S R+ +
Sbjct: 347 FSLPYYQTVENLLKYRLGLKGEKAIAHAKAKAEELGLSPKIVDALYQLIDVPESERISKL 406
Query: 346 LDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQK 405
M + E+++ V+ E++E ++ K + LSGG + +
Sbjct: 407 QKMGLTEDIIYKLFPPVVESFE---------PEEILEALDLGKDILKKKVIELSGGQKVR 457
Query: 406 VMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG--ILLISTDLDEILQL 463
V + ++I +PK++ + EP LD + LK+ +ER G I+L+S ++ I ++
Sbjct: 458 VAMALQLITKPKILFLDEPFGDLDPITLRDV-ANYLKIINERFGTTIVLVSHCVEFIKEI 516
Query: 464 SDRVAVIYEGKIMSIGKTEE 483
SDR ++ E +++ G EE
Sbjct: 517 SDRAILLDENRLVMEGNPEE 536
>gb|AAB99680.1| (U67606) methyl coenzyme M reductase system, component A2-like
[Methanococcus jannaschii]
Length = 555
Score = 149 bits (373), Expect = 6e-35
Identities = 140/560 (25%), Positives = 253/560 (45%), Gaps = 104/560 (18%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M V++ + K Y D AL V+ + ++GEI G++G++GAGKSTL+RIL G + +GE
Sbjct: 1 MITVKVKNLTKKYGD-FKALDKVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGE 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGI--------K 112
+++ G++ D +E A+ Q + V+ N+ + +I +
Sbjct: 60 VEILGRK-------DNFKEITAIHLQRNFALWAEPVINNIIRKLYAIRNNADEQLPLEEE 112
Query: 113 ISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRV----EIIKALMLNAKILILDEPTS 168
+ EK A E ++ VG E + L G +QR+ +I K +L+LDEP +
Sbjct: 113 WEEYEKTAIEILKLVGLEHKKDAFANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPAT 172
Query: 169 VLTPIEVKELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVS 227
+ P ++L ++N++++ GITVI +H + + + DR+ +L G+V EV
Sbjct: 173 MACPASKQKLLDVIKNIRDKLGITVIITSHLPEIHRYLCDRLILLENGKVKMDGDVEEVL 232
Query: 228 ERELARMMVQRDVVMEISKGKSTPG---NTILKVEDL----WVKDDRGLDAVKGVSFELR 280
L +M K TP N I++V ++ +V ++ VSF+++
Sbjct: 233 NEFLKKMK---------PPYKRTPNIKDNAIIQVRNVSKRYYVVHGGETLNLRNVSFDVK 283
Query: 281 EGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVT------------------- 321
EGEIL I G G G+ + +AG+ +P++GKI + G D+T
Sbjct: 284 EGEILSIIGPSGVGKTVIMRLMAGLELPDEGKIIVDGIDITNYGWERIELRKRIGIMHQE 343
Query: 322 -KLPAHERYKSGLAY-----------------------------------VPDSRRVGLV 345
LP ++ ++ L Y VP+S R+ +
Sbjct: 344 FSLPYYQTVENLLKYRLGLKGEKAIAHAKAKAEELGLSPKIVDALYQLIDVPESERISKL 403
Query: 346 LDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQK 405
M + E+++ V+ E++E ++ K + LSGG + +
Sbjct: 404 QKMGLTEDIIYKLFPPVVESFE---------PEEILEALDLGKDILKKKVIELSGGQKVR 454
Query: 406 VMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG--ILLISTDLDEILQL 463
V + ++I +PK++ + EP LD + LK+ +ER G I+L+S ++ I ++
Sbjct: 455 VAMALQLITKPKILFLDEPFGDLDPITLRDV-ANYLKIINERFGTTIVLVSHCVEFIKEI 513
Query: 464 SDRVAVIYEGKIMSIGKTEE 483
SDR ++ E +++ G EE
Sbjct: 514 SDRAILLDENRLVMEGNPEE 533
>pir||A70338 ABC transporter - Aquifex aeolicus >gi|2983088|gb|AAC06694.1|
(AE000689) ABC transporter [Aquifex aeolicus]
Length = 219
Score = 140 bits (350), Expect = 3e-32
Identities = 86/221 (38%), Positives = 129/221 (57%), Gaps = 8/221 (3%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M VE+ + K+YPDG +AL+GV+L VEEGE G++G +G+GKSTL+ ++ G KP++G
Sbjct: 1 MKVVELKNVKKIYPDGTIALKGVSLSVEEGEFLGVMGPSGSGKSTLLHLIGGLDKPSEGI 60
Query: 61 IKVFGKEVSF---NGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE 117
+KVFGKE++ + + + IA V+Q + L+ F+VLENL L I I + +
Sbjct: 61 VKVFGKEINHLDEDELAEMRKRKIAYVFQFYYLLEDFSVLENLTL----IGELAGIKNPK 116
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
K A E + + +N L G QQRV I +ALM+ K+++ DEPT L E
Sbjct: 117 KKALELLDFLRLSHRINHKPYQLSGGEQQRVAIGRALMVEPKLILADEPTGNLDSKEGFR 176
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+F+ + L E+GIT + TH +K R+ LR GE+V
Sbjct: 177 IFELFKELNEKGITFVVATHN-DSLKPFFGRIINLRDGEIV 216
Score = 83.5 bits (203), Expect = 5e-15
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH- 326
G A+KGVS + EGE LG+ G G+G+ L + G+ P +G +++ GK++ L
Sbjct: 16 GTIALKGVSLSVEEGEFLGVMGPSGSGKSTLLHLIGGLDKPSEGIVKVFGKEINHLDEDE 75
Query: 327 --ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKF 384
E K +AYV + L+ D +V+EN+ L G ++ K + +E
Sbjct: 76 LAEMRKRKIAYV--FQFYYLLEDFSVLENLTLI--------GELAGIK--NPKKKALELL 123
Query: 385 EVLLSSTKAPIK--HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
+ L S + K LSGG QQ+V +GR ++ EPK+I+ EPT LD F L K
Sbjct: 124 DFLRLSHRINHKPYQLSGGEQQRVAIGRALMVEPKLILADEPTGNLD-SKEGFRIFELFK 182
Query: 443 LRDERKGILLISTDLDEILQLSDRVAVIYEGKIMS 477
+E+ +++T D + R+ + +G+I++
Sbjct: 183 ELNEKGITFVVATHNDSLKPFFGRIINLRDGEIVT 217
>pir||E71957 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4154751|gb|AAD05811.1| (AE001461) ABC
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 516
Score = 140 bits (350), Expect = 3e-32
Identities = 140/502 (27%), Positives = 238/502 (46%), Gaps = 56/502 (11%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRI---LYGEIKPTKGEIKVFGKEVSFNGPWD 75
+L+ +N+ + E ++GE+G+GKS++ + L KP GEI +
Sbjct: 16 SLQNINISLSYSERVAIVGESGSGKSSIANLVMRLNPRFKPHNGEILFETTNL------- 68
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINP----GIKISDV---------EKLAKE 122
++E A + + + + L S+NP G ++S+ + L KE
Sbjct: 69 -LKESEAFMQHLRGNIIAYIAQDPLS----SLNPLHKIGKQMSEAYFLHHKNASQVLLKE 123
Query: 123 KMREVGFEVPLNEIVED-----LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
++ +V L+E D L G +QRV I ++ K+LI DEPT+ L +
Sbjct: 124 QVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQ 183
Query: 178 LFKTLRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELAR 233
+ L+ L E+ I ++FI+H LK VK + DRV VL++GE+V T T E+ + E ++
Sbjct: 184 ILDLLKQLSVEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKELFNDPKHEYSK 243
Query: 234 MMVQRDVVMEISKGKSTPGNTILKVEDLWV--------KDDRGLDAVKGVSFELREGEIL 285
+++Q + +K T+L+V+D V + + V F L+ E +
Sbjct: 244 LLIQASNLP--AKNLKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVDFSLKAKENI 301
Query: 286 GIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL--PAHERYKSGLAYVPDSRRVG 343
GI G G+G+ LA L + + G+ ++LG+ V L A + Y+ L V
Sbjct: 302 GIIGESGSGKSSLALGLLKLAL-NSGEEKILGQSVGLLNSKAFKPYRKILQMVFQDPYAS 360
Query: 344 LVLDMNVVENVVLTNLSRVLHK-GRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGN 402
L ++ ++++++ L K + W E+ E V LL+ LSGG
Sbjct: 361 LNPRLS-IQSILIEALRFAYPKASQQEWHHLAELCLEEVCLNPELLNFY---AYELSGGE 416
Query: 403 QQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK-GILLISTDLDEIL 461
+Q+V + R I +P++I++ EPT LD + + + LL L++++ L IS DLD I
Sbjct: 417 RQRVAIARAIALKPRIILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIK 476
Query: 462 QLSDRVAVIYEGKIMSIGKTEE 483
DRV V+ EGKI+ G EE
Sbjct: 477 AFCDRVLVVSEGKIVETGAIEE 498
Score = 85.0 bits (207), Expect = 2e-15
Identities = 66/213 (30%), Positives = 111/213 (51%), Gaps = 7/213 (3%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSF--NGPWDAI 77
+ V+ ++ E G++GE+G+GKS+L L ++ GE K+ G+ V + +
Sbjct: 288 IASVDFSLKAKENIGIIGESGSGKSSLALGLL-KLALNSGEEKILGQSVGLLNSKAFKPY 346
Query: 78 REGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPL-N 134
R+ + MV+Q + +L P ++ L A+ P + LA+ + EV L N
Sbjct: 347 RKILQMVFQDPYASLNPRLSIQSILIEALRFAYPKASQQEWHHLAELCLEEVCLNPELLN 406
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-GITVI 193
+L G +QRV I +A+ L +I++LDEPTS L K + + L NL+E+ ++ +
Sbjct: 407 FYAYELSGGERQRVAIARAIALKPRIILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYL 466
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
FI+H L +K DRV V+ G++V T EV
Sbjct: 467 FISHDLDVIKAFCDRVLVVSEGKIVETGAIEEV 499
>pir||B64551 oligopeptide ABC transporter, ATP-binding protein - Helicobacter
pylori (strain 26695) >gi|2313342|gb|AAD07317.1|
(AE000544) oligopeptide ABC transporter, ATP-binding
protein (oppD) [Helicobacter pylori 26695]
Length = 516
Score = 136 bits (340), Expect = 4e-31
Identities = 135/492 (27%), Positives = 233/492 (46%), Gaps = 36/492 (7%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRI---LYGEIKPTKGEIKVFGKEVSFNGPWD 75
+L+ +N+ + E ++GE+G+GKS++ I L KP GE+ +F +
Sbjct: 16 SLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEV-LFETTNLLKESEE 74
Query: 76 AIRE--GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPL 133
++ G A+ Y + + L + M + + L KE++ +V L
Sbjct: 75 FMQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMKQVQL 134
Query: 134 NEIVED-----LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK-E 187
+E D L G +QRV I ++ K+LI DEPT+ L ++ + L E
Sbjct: 135 DEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSAE 194
Query: 188 RGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMVQRDVVMEI 244
+ I ++FI+H LK VK + DRV VL++GE+V T T ++ + E +++++Q +
Sbjct: 195 KNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFNDPKHEYSKLLIQASNLP-- 252
Query: 245 SKGKSTPGNTILKVEDLWV--------KDDRGLDAVKGVSFELREGEILGIAGVQGNGQR 296
+K T+L+V+D V + + V+F L+ E +GI G G+G+
Sbjct: 253 AKNLKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESGSGKS 312
Query: 297 ELAEALAGIRIPEKGKIELLGKDVTKL--PAHERYKSGLAYVPDSRRVGLVLDMNVVENV 354
LA L + + G+ ++LG+ V L A + Y+ L V L +++
Sbjct: 313 SLALGLLKLAL-NSGEEKILGQSVGSLNSKAFKPYRKILQMVFQDPYASLNPRLSI--QS 369
Query: 355 VLTNLSRVLH--KGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREI 412
+LT R + + W ++ E V LL+S LSGG +Q+V + R I
Sbjct: 370 ILTEALRFAYPKASKEEWHHLAKLCLEEVCLSHELLNSY---AYELSGGERQRVAIARAI 426
Query: 413 IREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK-GILLISTDLDEILQLSDRVAVIY 471
+PK+I++ EPT LD + + + LL L++++ L IS DLD I D+V VI
Sbjct: 427 ALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVIS 486
Query: 472 EGKIMSIGKTEE 483
EGK++ + +E
Sbjct: 487 EGKVVEMNTIKE 498
Score = 85.4 bits (208), Expect = 1e-15
Identities = 69/213 (32%), Positives = 111/213 (51%), Gaps = 7/213 (3%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEV-SFNGP-WDAI 77
+ VN ++ E G++GE+G+GKS+L L ++ GE K+ G+ V S N +
Sbjct: 288 IASVNFSLKAKENIGIIGESGSGKSSLALGLL-KLALNSGEEKILGQSVGSLNSKAFKPY 346
Query: 78 REGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPL-N 134
R+ + MV+Q + +L P ++ L A+ P + LAK + EV L N
Sbjct: 347 RKILQMVFQDPYASLNPRLSIQSILTEALRFAYPKASKEEWHHLAKLCLEEVCLSHELLN 406
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-GITVI 193
+L G +QRV I +A+ L KI++LDEPTS L K + + L +L+E+ ++ +
Sbjct: 407 SYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYL 466
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
FI+H L +K D+V V+ G+VV EV
Sbjct: 467 FISHDLDVIKAFCDKVLVISEGKVVEMNTIKEV 499
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 136 bits (339), Expect = 6e-31
Identities = 130/499 (26%), Positives = 232/499 (46%), Gaps = 52/499 (10%)
Query: 22 GVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTK---GEIKVFGKEVSFNGPWDAIR 78
GV+ V GE GL+G +G GKST+ + + + P G+I + G+ + R
Sbjct: 29 GVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPPGSQIFGQIALQGQSLLGLSASQLQR 88
Query: 79 ---EGIAMVYQH--FTLVPTFTVLENLYLAMLS-----INPGIKISDVEKLAKEKMREVG 128
E I +V+Q L P ++ ++ + S P + +E L + K
Sbjct: 89 LRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRSHWFSWSRPQRRQRIIEVLERVK----- 143
Query: 129 FEVPLNEIVE---DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNL 185
+P N + + +L G++QRV I AL+LN ++I DEPT+ L E+ + L L
Sbjct: 144 --IPANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEPTTALDVTVAAEILEELTRL 201
Query: 186 ---KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVM 242
++RG+ + I+H L + + DR+ V+ +G+++ +V +R
Sbjct: 202 CQQEQRGL--LLISHDLALMAKYCDRLAVMHQGKIMELGAAHQVLQRPQHPYTQSLLAAT 259
Query: 243 EISKGKSTPGNT---ILKVEDL--------WVKDDRGLDAVKGVSFELREGEILGIAGVQ 291
+++ + P +T +L+VE+L W++ + AV GV LR GE LG+ G
Sbjct: 260 QLTSPQPPPLDTAPELLRVENLQRHYRLGGWLQPQTTIRAVDGVDLTLRRGETLGLVGES 319
Query: 292 GNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE--RYKSGLAYVPDSRRVGLVLDMN 349
G G+ L+ + + G + LG+ +T+L A + R + L + L M
Sbjct: 320 GCGKSTLSRLILQLIPANAGDVVFLGRSLTQLSAAQLRRTRRDLQMIFQDPHACLNPKMT 379
Query: 350 VVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKH----LSGGNQQK 405
V +N++ L L R + ++ EM +V L+ +A + LSGG +Q+
Sbjct: 380 VAQNLLEPLLIHRLMAKRAAQERVREML------MQVELTPAEAYLHRYPHALSGGQRQR 433
Query: 406 VMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE-RKGILLISTDLDEILQLS 464
V + R +I P++++ EP LD + + +L+++ + L I+ DL +
Sbjct: 434 VAIARALITHPQLVICDEPVSMLDAHIQAQVLALMQELKEQLQLTYLFITHDLAIARRFC 493
Query: 465 DRVAVIYEGKIMSIGKTEE 483
DRVAV+Y GKI+ + T +
Sbjct: 494 DRVAVMYRGKIVELAPTAQ 512
Score = 96.3 bits (236), Expect = 7e-19
Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 17/220 (7%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVS--FNGPWDA 76
A+ GV+L + GE GL+GE+G GKSTL R++ I G++ G+ ++
Sbjct: 299 AVDGVDLTLRRGETLGLVGESGCGKSTLSRLILQLIPANAGDVVFLGRSLTQLSAAQLRR 358
Query: 77 IREGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVP-- 132
R + M++Q H L P TV +NL +L I ++ A+E++RE+ +V
Sbjct: 359 TRRDLQMIFQDPHACLNPKMTVAQNLLEPLL-----IHRLMAKRAAQERVREMLMQVELT 413
Query: 133 -----LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKE 187
L+ L G +QRV I +AL+ + +++I DEP S+L ++ ++ LKE
Sbjct: 414 PAEAYLHRYPHALSGGQRQRVAIARALITHPQLVICDEPVSMLDAHIQAQVLALMQELKE 473
Query: 188 R-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
+ +T +FITH L + DRV V+ RG++V T+++
Sbjct: 474 QLQLTYLFITHDLAIARRFCDRVAVMYRGKIVELAPTAQL 513
Score = 85.0 bits (207), Expect = 2e-15
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 18/223 (8%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEK---GKIELLGKDVTKLPAHER 328
V GVSF + GE G+ G G G+ + +A+ + P G+I L G+ + L A +
Sbjct: 27 VDGVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPPGSQIFGQIALQGQSLLGLSASQL 86
Query: 329 YKS-----GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTN--EVV 381
+ GL + R+ ++ + + +L SW + EV+
Sbjct: 87 QRLRGEQIGLVFQDPMTRLNPLMS-------IYDHCDELLRSHWFSWSRPQRRQRIIEVL 139
Query: 382 EKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLL 441
E+ ++ + LSGG +Q+V + ++ P +I+ EPT LD+ I + L
Sbjct: 140 ERVKIPANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEPTTALDVTVAAEILEELT 199
Query: 442 KL-RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+L + E++G+LLIS DL + + DR+AV+++GKIM +G +
Sbjct: 200 RLCQQEQRGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAHQ 242
>pir||H72356 amino acid ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981110|gb|AAD35676.1|AE001734_3 (AE001734) amino
acid ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 242
Score = 134 bits (335), Expect = 2e-30
Identities = 77/218 (35%), Positives = 134/218 (61%), Gaps = 3/218 (1%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
MT +++ + K Y + LRG++L+V++GE+ ++G +G+GKSTL+R + + +G+
Sbjct: 1 MTVLKIEDLHK-YFGKLYVLRGIDLEVKKGEVISIIGPSGSGKSTLLRCINLLEEYQRGK 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I G+ ++ + IR I MV+Q F L P +VL NL LA + + K VEK A
Sbjct: 60 IYFKGELITHRNI-NRIRSSIGMVFQQFNLFPHLSVLNNLTLAPMKVKNMQKDEAVEK-A 117
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
K+ + VG +NE +L G QQRV I +ALM++ ++++ DEPTS L P VKE+
Sbjct: 118 KKLLERVGLIEKINEKPGNLSGGQQQRVAIARALMMDPELMLFDEPTSALDPELVKEVLD 177
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+++L + G+T++ +TH+++ ++++DRV + G +V
Sbjct: 178 VIKDLAQSGMTMLIVTHEMRFARDVSDRVVFMDEGRIV 215
Score = 85.8 bits (209), Expect = 1e-15
Identities = 59/230 (25%), Positives = 121/230 (51%), Gaps = 9/230 (3%)
Query: 254 TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKI 313
T+LK+EDL K L ++G+ E+++GE++ I G G+G+ L + + ++GKI
Sbjct: 2 TVLKIEDLH-KYFGKLYVLRGIDLEVKKGEVISIIGPSGSGKSTLLRCINLLEEYQRGKI 60
Query: 314 ELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKA 373
G+ +T + R +S + V ++ L ++V+ N+ L + + D+A
Sbjct: 61 YFKGELITHRNIN-RIRSSIGMV--FQQFNLFPHLSVLNNLTLAPMK----VKNMQKDEA 113
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
E +++E+ ++ + P +LSGG QQ+V + R ++ +P++++ EPT LD
Sbjct: 114 VEKAKKLLERVGLIEKINEKP-GNLSGGQQQRVAIARALMMDPELMLFDEPTSALDPELV 172
Query: 434 EFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + + L +L+++ ++ +SDRV + EG+I+ +G E+
Sbjct: 173 KEVLDVIKDLAQSGMTMLIVTHEMRFARDVSDRVVFMDEGRIVEMGPPEK 222
>gb|AAG37225.1|AF298223_3 (AF298223) glutamine ABC transporter, ATP-binding subunit
[Methanococcus maripaludis]
Length = 243
Score = 134 bits (334), Expect = 2e-30
Identities = 83/228 (36%), Positives = 132/228 (57%), Gaps = 11/228 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM I K + + V L+GV+LKV +GE+ ++G +G+GKSTL+R + G K T+G I
Sbjct: 2 IEMVNIHKKFKEAHV-LKGVDLKVAKGEVLVIVGPSGSGKSTLLRCINGLEKTTEGHIFF 60
Query: 64 FG-----KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
G K+V+ N IR+ I MV+Q F L P TVL+N+ A + + + E+
Sbjct: 61 EGDDITDKKVNIN----KIRQKIGMVFQQFNLFPHLTVLDNITFAPRKVL-NVSKKEAEE 115
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
LA+E +++VG E N+ L G QQRV I +AL + ++ DEPTS L P VKE+
Sbjct: 116 LARELLKKVGLEGKENQYPIQLSGGQQQRVAIARALAMKPDAMLFDEPTSALDPELVKEV 175
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
++ L G+T++ +TH++ KE+ DR+ + G+++ S+V
Sbjct: 176 LDVMKQLAYEGMTMVVVTHEMGFAKEVGDRLIFIDDGQILEDGNPSDV 223
Score = 77.6 bits (188), Expect = 3e-13
Identities = 54/215 (25%), Positives = 109/215 (50%), Gaps = 12/215 (5%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE---R 328
+KGV ++ +GE+L I G G+G+ L + G+ +G I G D+T + R
Sbjct: 17 LKGVDLKVAKGEVLVIVGPSGSGKSTLLRCINGLEKTTEGHIFFEGDDITDKKVNINKIR 76
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
K G+ + ++ L + V++N+ +VL+ +S +A E+ E+++K +
Sbjct: 77 QKIGMVF----QQFNLFPHLTVLDNITFAP-RKVLN---VSKKEAEELARELLKKVGLEG 128
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
+ PI+ LSGG QQ+V + R + +P ++ EPT LD + + + +L E
Sbjct: 129 KENQYPIQ-LSGGQQQRVAIARALAMKPDAMLFDEPTSALDPELVKEVLDVMKQLAYEGM 187
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+++++ ++ ++ DR+ I +G+I+ G +
Sbjct: 188 TMVVVTHEMGFAKEVGDRLIFIDDGQILEDGNPSD 222
>pir||D83419 probable ATP-binding component of ABC transporter PA1807 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947791|gb|AAG05196.1|AE004607_2 (AE004607) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 133 bits (332), Expect = 4e-30
Identities = 134/502 (26%), Positives = 233/502 (45%), Gaps = 56/502 (11%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKS----TLMRIL-YGEIKPTKGEIKVFGKEVSFNGPW 74
+ GV+ + +GE L+GE+G+GKS +++R+L Y G I G+++ P
Sbjct: 25 VEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYSVASHPAGSIHYQGEDL-LKLPE 83
Query: 75 DAIR----EGIAMVYQH-FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGF 129
+R IAMV+Q T + +E +L+++ G+ + E + VG
Sbjct: 84 RRLRGIRGNRIAMVFQEPMTSLNPLHTIEKQLAEVLALHKGLGGAKASARILELLELVGI 143
Query: 130 EVP---LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK 186
P L +L G +QRV I AL ++LI DEPT+ L ++ L++L+
Sbjct: 144 PEPAKRLKAYPHELSGGQRQRVMIAMALACEPQLLIADEPTTALDVTVQLKILDLLKDLQ 203
Query: 187 ER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEIS 245
R G++++ ITH L V+ I RV V+++G +V E+ R R+++
Sbjct: 204 ARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVEQASCQELFAAP--RHPYTRELLNAEP 261
Query: 246 KG---KSTPGNTILKVEDL--WVKDDRGL--------DAVKGVSFELREGEILGIAGVQG 292
G + PG T+L V+DL W +G+ AV GV+FEL G+ LGI G G
Sbjct: 262 SGAPASNPPGETLLAVDDLRVWFPIRKGVFRRTVDHVKAVDGVNFELPRGQTLGIVGESG 321
Query: 293 NGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVE 352
+G+ L A+ + + +G I G + L H+ V RR +M VV
Sbjct: 322 SGKSTLGLAILRL-LESQGGIRFEGTRLDGLAQHD--------VRPLRR-----EMQVVF 367
Query: 353 NVVLTNLSRVLHKGRISWD--KANEMTNEVVEKFEVLLSSTKAPI---------KHLSGG 401
+LS + G I + + + + +E ++ ++ + + + SGG
Sbjct: 368 QDPYGSLSPRMCVGEIVGEGLRIHRIGSEAEQEQAIIDALVEVGLDPQTRYRYPHEFSGG 427
Query: 402 NQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE-RKGILLISTDLDEI 460
+Q++ + R ++ +P +I++ EPT LD + + L +L+ + L IS DL +
Sbjct: 428 QRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVV 487
Query: 461 LQLSDRVAVIYEGKIMSIGKTE 482
LS ++ V+ GK++ G E
Sbjct: 488 KALSHQLMVVRHGKVVEQGSAE 509
Score = 81.9 bits (199), Expect = 1e-14
Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 26/247 (10%)
Query: 255 ILKVEDLWVK---DDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALA-----GIR 306
IL++ DL V+ ++ V+GVSF++R+GE L + G G+G+ A ++ +
Sbjct: 5 ILEIRDLAVEFLSGEQRQRVVEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYSVA 64
Query: 307 IPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSR----- 361
G I G+D+ KLP ER G+ R+ +V + L + +
Sbjct: 65 SHPAGSIHYQGEDLLKLP--ERRLRGIR----GNRIAMVFQEPMTSLNPLHTIEKQLAEV 118
Query: 362 -VLHKGRISWDKANEMTNEVVEKFEVL--LSSTKAPIKHLSGGNQQKVMVGREIIREPKV 418
LHKG + KA+ E++E + KA LSGG +Q+VM+ + EP++
Sbjct: 119 LALHKG-LGGAKASARILELLELVGIPEPAKRLKAYPHELSGGQRQRVMIAMALACEPQL 177
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDERKG--ILLISTDLDEILQLSDRVAVIYEGKIM 476
++ EPT LD+ + LLK R G +LLI+ DL+ + +++ RV V+ +G+I+
Sbjct: 178 LIADEPTTALDV-TVQLKILDLLKDLQARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIV 236
Query: 477 SIGKTEE 483
+E
Sbjct: 237 EQASCQE 243
Score = 80.0 bits (194), Expect = 6e-14
Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 22/224 (9%)
Query: 8 GIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTL-MRILYGEIKPTKGEIKVFGK 66
G+ + D V A+ GVN ++ G+ G++GE+G+GKSTL + IL + ++G I+ G
Sbjct: 289 GVFRRTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTLGLAIL--RLLESQGGIRFEGT 346
Query: 67 EVSFNGPWDA--IREGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKI------SDV 116
+ D +R + +V+Q + +L P V E + G++I ++
Sbjct: 347 RLDGLAQHDVRPLRREMQVVFQDPYGSLSPRMCVGE-------IVGEGLRIHRIGSEAEQ 399
Query: 117 EKLAKEKMREVGFEVPLN-EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
E+ + + EVG + + G +QR+ I +AL+L +++LDEPTS L
Sbjct: 400 EQAIIDALVEVGLDPQTRYRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQ 459
Query: 176 KELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+++ + LR L+ + +T +FI+H L VK ++ ++ V+R G+VV
Sbjct: 460 RQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHGKVV 503
>pir||G83351 probable ATP-binding component of ABC transporter PA2350 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948387|gb|AAG05738.1|AE004661_5 (AE004661) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 369
Score = 132 bits (329), Expect = 8e-30
Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 11/229 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ + G+ K YP GV ALR ++L++ GE+ G++G +GAGKS+L+R L +P++G++ +
Sbjct: 29 IRLHGLGKRYPGGVQALREIDLEIRRGEVFGIIGRSGAGKSSLIRTLNRLERPSEGQVLI 88
Query: 64 FGKEVSFNGPWD-----AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+++ G +D A+R I M++QHF L+ TV +N+ L + G+ + +E+
Sbjct: 89 DDEDI---GGYDGQRLVALRRRIGMIFQHFNLMSAKTVRQNIALPLRV--AGVPRARIEE 143
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
++ VG E + L G +QRV I +AL+ +IL+ DE TS L P + +
Sbjct: 144 RVAGLLQLVGLEEKRDAYPAQLSGGQKQRVGIARALVHQPQILLCDEATSALDPESTQAI 203
Query: 179 FKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
LR++ R G+T++ ITH++ ++EI DRV VL G +V + EV
Sbjct: 204 LALLRDINRRLGLTIVLITHEMAVIREICDRVVVLECGRIVEQGEVWEV 252
Score = 73.4 bits (177), Expect = 6e-12
Identities = 57/220 (25%), Positives = 109/220 (48%), Gaps = 13/220 (5%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G+ A++ + E+R GE+ GI G G G+ L L + P +G++ + +D+
Sbjct: 41 GVQALREIDLEIRRGEVFGIIGRSGAGKSSLIRTLNRLERPSEGQVLIDDEDIGGY---- 96
Query: 328 RYKSGLAYVPDSRRVGLVLD-MNVVE-NVVLTNLSRVLHKGRISWDKANEMTNEVVEKFE 385
G V RR+G++ N++ V N++ L + + E +++
Sbjct: 97 ---DGQRLVALRRRIGMIFQHFNLMSAKTVRQNIALPLRVAGVPRARIEERVAGLLQLVG 153
Query: 386 VLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD 445
+ P + LSGG +Q+V + R ++ +P++++ E T LD +T+ I LL+ +
Sbjct: 154 LEEKRDAYPAQ-LSGGQKQRVGIARALVHQPQILLCDEATSALDPESTQAI-LALLRDIN 211
Query: 446 ERKG--ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
R G I+LI+ ++ I ++ DRV V+ G+I+ G+ E
Sbjct: 212 RRLGLTIVLITHEMAVIREICDRVVVLECGRIVEQGEVWE 251
>pir||T03558 ribose transport ATP-binding protein - Rhodobacter capsulatus
>gi|3128359|gb|AAC16211.1| (AF010496) ribose transport
ATP-binding protein [Rhodobacter capsulatus]
Length = 305
Score = 131 bits (326), Expect = 2e-29
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 11/238 (4%)
Query: 8 GIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKE 67
G+VK Y V AL + + GEI ++G+NGAGKSTL++ L G ++P GEI++ G
Sbjct: 11 GLVKRYGK-VTALDHADFDLMPGEILAVIGDNGAGKSTLIKALCGAVQPDAGEIRLDGAP 69
Query: 68 VSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS--------DVEKL 119
V F P A GIA VYQ L P ++++N+++ PGI S +
Sbjct: 70 VRFAAPMQAQEAGIATVYQSLALSPALSIVDNMFMGRELRKPGIAGSLFRALDHGRMRAF 129
Query: 120 AKEKMREVGFEV--PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
A+EK+ E+G +++ VE L G +Q V + +A +K++ILDEPT+ L E +
Sbjct: 130 AREKLSELGLMTIQNIDQTVETLSGGQRQGVAVARAAAFGSKVIILDEPTAALGVKESRR 189
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM 235
+ + + ++K RGI +I I+H + V E+ DR+ + R G + + S + +M
Sbjct: 190 VLELILDVKARGIPIILISHNMPHVFEVADRIHIHRLGRRLCVIDPKSHSMSDAVALM 247
Score = 75.3 bits (182), Expect = 1e-12
Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 22/238 (9%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ F+L GEIL + G G G+ L +AL G P+ G+I L G V + +
Sbjct: 21 ALDHADFDLMPGEILAVIGDNGAGKSTLIKALCGAVQPDAGEIRLDGAPVRFAAPMQAQE 80
Query: 331 SGLAYVPDSRRVGLVLDMNVVENV----------VLTNLSRVLHKGRI---SWDKANEMT 377
+G+A V S + L +++V+N+ + +L R L GR+ + +K +E+
Sbjct: 81 AGIATVYQS--LALSPALSIVDNMFMGRELRKPGIAGSLFRALDHGRMRAFAREKLSELG 138
Query: 378 NEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIR 437
++ + ++ LSGG +Q V V R KVI++ EPT L + + +
Sbjct: 139 LMTIQNID-------QTVETLSGGQRQGVAVARAAAFGSKVIILDEPTAALGVKESRRVL 191
Query: 438 KTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+ +L ++ I+LIS ++ + +++DR+ + G+ + + + ++ LM G
Sbjct: 192 ELILDVKARGIPIILISHNMPHVFEVADRIHIHRLGRRLCVIDPKSHSMSDAVALMTG 249
>dbj|BAB07378.1| (AP001519) teichoic acid ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 534
Score = 131 bits (326), Expect = 2e-29
Identities = 113/471 (23%), Positives = 214/471 (44%), Gaps = 43/471 (9%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
LR ++ +GEI G++G NGAGK+TL ++L G +KP +GE+ V G+ VS
Sbjct: 65 LRNLDFTGYKGEILGIIGSNGAGKTTLCKMLSGILKPDEGELYVDGR-VS---------- 113
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
A+ T EN YL + + GI+ +++ E G +++ ++
Sbjct: 114 --ALFSLGMGFKKELTGRENAYLNGMML--GIEKDQIDQFIDEIHEFSGLGSFIDQPMKY 169
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKL 199
G++ R+ A L +ILILDE + K+ ++ L + VI +TH L
Sbjct: 170 YSSGMKARLGFSVAAFLEPEILILDEALNTGDAAFGKKAAAKMKELVSKAKMVILVTHSL 229
Query: 200 KEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPGN----TI 255
+ ++ DR+ L RGE+ + +EV E+ + V+ + + K T N T+
Sbjct: 230 RYARKNCDRLLWLDRGEIRAIGEPAEVIEKYKETIPVKVRRPRKRLELKKTEANVKERTV 289
Query: 256 LKVEDLWVK---DDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGK 312
+K E++ + + A+K VSF+++EGE++GI G G G+ L + L I P++G+
Sbjct: 290 VKAENIGMSFNFKNETFWALKNVSFDIKEGEVVGIIGHNGAGKSTLCKLLTKILTPDEGE 349
Query: 313 IELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDK 372
+EL G+ + L S G ++ +NV L + + K R++ +
Sbjct: 350 LELSGETTSLL---------------SYGTGFNAQLSGKDNVYLNGMLLGIPKERVAQEY 394
Query: 373 ANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGA 432
N + F L P+K S G + ++ +P + ++ E D+
Sbjct: 395 PN------IVAFSELEKHMDKPVKSYSSGMKSRLGFSIAATLQPDIFIIDEALSTGDVAF 448
Query: 433 TEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + + ++ + K ++++S + + + R + +G++ G EE
Sbjct: 449 QQKASEKIQEMMERAKAVIIVSHSMKFVESVCTRAIWLEKGQVRFDGDPEE 499
Score = 71.8 bits (173), Expect = 2e-11
Identities = 56/202 (27%), Positives = 101/202 (49%), Gaps = 21/202 (10%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
AL+ V+ ++EGE+ G++G NGAGKSTL ++L + P +GE+++ G+ S +
Sbjct: 308 ALKNVSFDIKEGEVVGIIGHNGAGKSTLCKLLTKILTPDEGELELSGETTSL------LS 361
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGF---EVPLNE 135
G Q + +N+YL + + GI E++A+E V F E +++
Sbjct: 362 YGTGFNAQ-------LSGKDNVYLNGMLL--GI---PKERVAQEYPNIVAFSELEKHMDK 409
Query: 136 IVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFI 195
V+ G++ R+ A L I I+DE S ++ + ++ + ER VI +
Sbjct: 410 PVKSYSSGMKSRLGFSIAATLQPDIFIIDEALSTGDVAFQQKASEKIQEMMERAKAVIIV 469
Query: 196 THKLKEVKEITDRVTVLRRGEV 217
+H +K V+ + R L +G+V
Sbjct: 470 SHSMKFVESVCTRAIWLEKGQV 491
>gb|AAG28500.1|AF196574_3 (AF196574) FrcA [Sinorhizobium meliloti]
Length = 260
Score = 130 bits (324), Expect = 3e-29
Identities = 72/238 (30%), Positives = 131/238 (54%), Gaps = 11/238 (4%)
Query: 8 GIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKE 67
G+VK Y V AL + + GEI ++G+NGAGKS++++ + G + P +GEI++ GK
Sbjct: 11 GLVKRY-GRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAVTPDEGEIRLEGKP 69
Query: 68 VSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGI--------KISDVEKL 119
+ F P +A + GI VYQ+ L P ++ +N++L PGI + +EK
Sbjct: 70 IQFRSPMEARQAGIETVYQNLALSPALSIADNMFLGREIRKPGIMGKWFRSLDRAAMEKQ 129
Query: 120 AKEKMREVGFEV--PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
A+ K+ E+G +N+ VE L G +Q V + +A +K++I+DEPT+ L E +
Sbjct: 130 ARAKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVVIMDEPTAALGVKESRR 189
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM 235
+ + + +++ RG+ ++ I+H + V E+ DR+ + R G + + + + + M
Sbjct: 190 VLELILDVRRRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCVINPKDYTMSDAVAFM 247
Score = 78.8 bits (191), Expect = 1e-13
Identities = 58/232 (25%), Positives = 114/232 (49%), Gaps = 10/232 (4%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ F+L GEIL + G G G+ + +A++G P++G+I L GK + E +
Sbjct: 21 ALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAVTPDEGEIRLEGKPIQFRSPMEARQ 80
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSR---VLHKGRISWDKANEMTNEVVEKFEVL 387
+G+ V + + L +++ +N+ L R ++ K S D+A M + K L
Sbjct: 81 AGIETV--YQNLALSPALSIADNMFLGREIRKPGIMGKWFRSLDRA-AMEKQARAKLSEL 137
Query: 388 ----LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
+ + ++ LSGG +Q V V R KV+++ EPT L + + + + +L +
Sbjct: 138 GLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVVIMDEPTAALGVKESRRVLELILDV 197
Query: 444 RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
R I+LIS ++ + +++DR+ + G+ + + +++T+ M G
Sbjct: 198 RRRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCVINPKDYTMSDAVAFMTG 249
>gb|AAC72253.1| (U91581) LctF [Lactococcus lactis subsp. lactis]
Length = 306
Score = 130 bits (324), Expect = 3e-29
Identities = 71/214 (33%), Positives = 137/214 (63%), Gaps = 8/214 (3%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
++R + + V++G+I G LG NGAGKST M+++ G + PT+GE+KVFGK++ N +++
Sbjct: 21 SVRNLTISVKKGDIFGFLGPNGAGKSTTMKMILGLLHPTEGEVKVFGKKLD-NSVKNSVL 79
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVE 138
+ + + + + P + LENL L +N + ++EK+ + V E N++V+
Sbjct: 80 KDVGCLIEEPSFYPNLSGLENLKLVQKLLN--LPYHNIEKV----LNIVKLEDQKNKLVK 133
Query: 139 DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-GITVIFITH 197
+ +G++QR+ I AL+ K+LILDEPT+ L P ++E+ + +++L E+ GITV+ +H
Sbjct: 134 NYSLGMKQRLGIALALIKFPKLLILDEPTNGLDPTGIREIRELIKSLPEKYGITVLISSH 193
Query: 198 KLKEVKEITDRVTVLRRGEVVGTVKTSEVSEREL 231
L E+++I + V ++++GE++ + S++ E+ +
Sbjct: 194 LLSEIEQIANTVAIIKKGELLYEGELSKLEEQPI 227
>gi|11499064 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445944|pir||D69433 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649101|gb|AAB89781.1| (AE001001) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 226
Score = 130 bits (323), Expect = 4e-29
Identities = 84/228 (36%), Positives = 130/228 (56%), Gaps = 10/228 (4%)
Query: 1 MTAVEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT 57
M +E+ + K+Y V AL GV+++VE GE ++G +G+GKSTL+ ++ KPT
Sbjct: 1 MKVIELVDVYKIYRTAYYEVHALDGVSMEVEAGEFVAIMGPSGSGKSTLLNMIGCLDKPT 60
Query: 58 KGEIKVFGKEVSFNGPWDAI---REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS 114
KGE+ + G + S + R+ I ++Q + L+PT T LEN+ L M I G+ +
Sbjct: 61 KGEVIINGVKTSGLSDRELTKLRRDSIGFIFQQYNLIPTLTALENVELPM--IFRGVARA 118
Query: 115 DVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIE 174
+ E+ AKE ++ VG E + ++ G QQRV I +AL N KIL+ DEPT L
Sbjct: 119 ERERRAKELLKVVGIEELADRRPREMSGGQQQRVAIARALANNPKILLCDEPTGNLDTKS 178
Query: 175 VKELFKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTV 221
+++ L+NL +E G+TV+ +TH + E DRV +R G+VV V
Sbjct: 179 GRQVMGILKNLNEENGVTVVLVTHD-PSLSEYADRVIRIRDGKVVEDV 225
Score = 72.6 bits (175), Expect = 9e-12
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 11/209 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ GVS E+ GE + I G G+G+ L + + P KG++ + G + L E K
Sbjct: 22 ALDGVSMEVEAGEFVAIMGPSGSGKSTLLNMIGCLDKPTKGEVIINGVKTSGLSDRELTK 81
Query: 331 ---SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
+ ++ ++ L+ + +ENV L + R + + + E+++ +
Sbjct: 82 LRRDSIGFI--FQQYNLIPTLTALENVELPMIFRGVARA-----ERERRAKELLKVVGIE 134
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+ + P + +SGG QQ+V + R + PK+++ EPT LD + + L L +E
Sbjct: 135 ELADRRP-REMSGGQQQRVAIARALANNPKILLCDEPTGNLDTKSGRQVMGILKNLNEEN 193
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIM 476
+++ T + + +DRV I +GK++
Sbjct: 194 GVTVVLVTHDPSLSEYADRVIRIRDGKVV 222
>sp|P54537|YQIZ_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN IN
BMRU-ANSR INTERGENIC REGION >gi|7442518|pir||H69962
ABC-type transport protein yqiZ - Bacillus subtilis
>gi|1303951|dbj|BAA12606.1| (D84432) YqiZ [Bacillus
subtilis] >gi|2634830|emb|CAB14327.1| (Z99116) similar
to amino acid ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 240
Score = 129 bits (322), Expect = 5e-29
Identities = 75/202 (37%), Positives = 118/202 (58%), Gaps = 6/202 (2%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD---A 76
L+ ++ + EGE+ ++G +G+GKST +R L KP G I + K+ P
Sbjct: 17 LKNISTTIAEGEVVAVIGPSGSGKSTFLRCLNLLEKPNGGTITI--KDTEITKPKTNTLK 74
Query: 77 IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEI 136
+RE I MV+QHF L P TVLEN+ A +++ K + EK A++ +R+VG N+
Sbjct: 75 VRENIGMVFQHFHLFPHKTVLENIMYAPVNVKKESKQAAQEK-AEDLLRKVGLFEKRNDY 133
Query: 137 VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFIT 196
L G +QRV I +AL +N I++ DEPTS L P VKE+ + ++ L E G+T++ +T
Sbjct: 134 PNRLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVKEVLQVMKELVETGMTMVIVT 193
Query: 197 HKLKEVKEITDRVTVLRRGEVV 218
H++ KE+ DRV + +G +V
Sbjct: 194 HEMGFAKEVADRVLFMDQGMIV 215
>pir||D70020 ABC transporter (ATP-binding protein) homolog yusC - Bacillus
subtilis >gi|2635771|emb|CAB15264.1| (Z99120) similar to
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 341
Score = 129 bits (322), Expect = 5e-29
Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 13/253 (5%)
Query: 4 VEMSGIVKVYPD---GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+ + + KVY V A++ V+L +++GEI G++G +GAGKS+L+R+L G KPT G
Sbjct: 2 INLQDVSKVYKSKHGDVNAVQNVSLSIKKGEIFGIIGYSGAGKSSLIRLLNGLEKPTSGT 61
Query: 61 IKVFG---KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE 117
++V G EV+ G A R I+M++QHF L+ + TV +N+ + G+K S+
Sbjct: 62 VEVAGTKINEVNGRGLRKA-RHEISMIFQHFNLLWSRTVRDNIMFPLEI--AGVKKSERI 118
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
K A E ++ VG E L G +QRV I +AL N K+L+ DE TS L P
Sbjct: 119 KRANELIKLVGLEGKEKSYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Query: 178 LFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELAR 233
+ L ++ ER G+T++ ITH++ +++I +RV V+ G+VV + +V + ++ +
Sbjct: 179 ILDLLSDINERLGLTIVLITHEMHVIRKICNRVAVMENGKVVEEGEVLDVFKNPKEQMTK 238
Query: 234 MMVQRDVVMEISK 246
VQ+ E +K
Sbjct: 239 RFVQQVTEPEETK 251
Score = 83.1 bits (202), Expect = 6e-15
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
++AV+ VS +++GEI GI G G G+ L L G+ P G +E+ G + ++
Sbjct: 18 VNAVQNVSLSIKKGEIFGIIGYSGAGKSSLIRLLNGLEKPTSGTVEVAGTKINEVNGRGL 77
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLT-NLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
K+ + L+ V +N++ ++ V RI +ANE+ K L
Sbjct: 78 RKARHEISMIFQHFNLLWSRTVRDNIMFPLEIAGVKKSERIK--RANELI-----KLVGL 130
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
K+ LSGG +Q+V + R + PKV++ E T LD T+ I L + +ER
Sbjct: 131 EGKEKSYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILDLLSDI-NER 189
Query: 448 KG--ILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
G I+LI+ ++ I ++ +RVAV+ GK++ G+
Sbjct: 190 LGLTIVLITHEMHVIRKICNRVAVMENGKVVEEGE 224
>pir||C75369 amino acid ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459415|gb|AAF11206.1|AE002008_1 (AE002008) amino
acid ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 265
Score = 129 bits (322), Expect = 5e-29
Identities = 72/200 (36%), Positives = 111/200 (55%), Gaps = 1/200 (0%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
ALRGVNL V +GE+ ++G +G+GKST +R + G I V G + DAIR
Sbjct: 40 ALRGVNLTVRQGEVVVIIGPSGSGKSTFIRTINALDPHDGGSITVDGLPLQGARNLDAIR 99
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVE 138
+ MV+Q F L P TVL+N+ LA + G+ + + + +R VG E +
Sbjct: 100 REVGMVFQSFNLFPHLTVLDNITLAPTRVR-GVDKAQAQARGLDLLRRVGIEEQAYKFPA 158
Query: 139 DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHK 198
L G QQRV I +AL + KI++ DEPTS L P +KE+ ++ L G+T++ +TH+
Sbjct: 159 QLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMIKEVLDVMKELARTGMTMLVVTHE 218
Query: 199 LKEVKEITDRVTVLRRGEVV 218
+ +E+ DR+ +G +V
Sbjct: 219 MGFAREVADRILFFDQGNIV 238
>pir||D69627 cell-division ATP-binding protein ftsE - Bacillus subtilis
>gi|2618833|gb|AAC67262.1| (AF017113) cell division
ATP-binding protein [Bacillus subtilis]
>gi|2636052|emb|CAB15543.1| (Z99122) cell-division
ATP-binding protein [Bacillus subtilis]
Length = 228
Score = 129 bits (321), Expect = 7e-29
Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 4/217 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM + K YP+GV AL G+++ + GE ++G +GAGKST ++++Y E KPTKG+I +
Sbjct: 2 IEMKEVYKAYPNGVKALNGISVTIHPGEFVYVVGPSGAGKSTFIKMIYREEKPTKGQILI 61
Query: 64 FGKEVSFNGPWDA--IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
K+++ + +R I +V+Q F L+P TV EN+ A+ I G + S ++K
Sbjct: 62 NHKDLATIKEKEIPFVRRKIGVVFQDFKLLPKLTVFENVAFALEVI--GEQPSVIKKRVL 119
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + V + + + L G QQRV I ++++ N ++I DEPT L P E+ KT
Sbjct: 120 EVLDLVQLKHKARQFPDQLSGGEQQRVSIARSIVNNPDVVIADEPTGNLDPDTSWEVMKT 179
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
L + RG TV+ TH + V + RV + G +V
Sbjct: 180 LEEINNRGTTVVMATHNKEIVNTMKKRVIAIEDGIIV 216
Score = 70.6 bits (170), Expect = 4e-11
Identities = 52/225 (23%), Positives = 109/225 (48%), Gaps = 12/225 (5%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
++++++++ G+ A+ G+S + GE + + G G G+ + + P KG+I
Sbjct: 1 MIEMKEVYKAYPNGVKALNGISVTIHPGEFVYVVGPSGAGKSTFIKMIYREEKPTKGQIL 60
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVL-DMNVVENVVLTNLSRVLHKGRISWDKA 373
+ KD+ + E + +V R++G+V D ++ LT V + ++
Sbjct: 61 INHKDLATIKEKE-----IPFV--RRKIGVVFQDFKLLPK--LTVFENVAFALEVIGEQP 111
Query: 374 NEMTNEVVEKFEVLLSSTKAPI--KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIG 431
+ + V+E +++ KA LSGG QQ+V + R I+ P V++ EPT LD
Sbjct: 112 SVIKKRVLEVLDLVQLKHKARQFPDQLSGGEQQRVSIARSIVNNPDVVIADEPTGNLDPD 171
Query: 432 ATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
+ + KTL ++ + +++ + + + + + RV I +G I+
Sbjct: 172 TSWEVMKTLEEINNRGTTVVMATHNKEIVNTMKKRVIAIEDGIIV 216
>pir||G64435 cobalt transport ATP-binding protein O homolog - Methanococcus
jannaschii >gi|1591732|gb|AAB99089.1| (U67551) cobalt
transport ATP-binding protein (cbiO) [Methanococcus
jannaschii]
Length = 279
Score = 129 bits (321), Expect = 7e-29
Identities = 80/226 (35%), Positives = 130/226 (57%), Gaps = 6/226 (2%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M VE + YPDG L+G+N KV++GE+ LLG NGAGKSTL G ++PTKGE
Sbjct: 1 MYIVETKDLYFRYPDGTAVLKGINFKVKKGEMVSLLGPNGAGKSTLFLHFNGILRPTKGE 60
Query: 61 IKVFGKEVSFNGP-WDAIREGIAMVYQH-FTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+ + GK + ++ +R+ + +V+Q+ + TV E++ A +N G+ +VEK
Sbjct: 61 VLIKGKPIKYDKKSLVEVRKTVGLVFQNPDDQIFAPTVKEDV--AFGPLNLGLPKEEVEK 118
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
KE ++ VG E N+ L G ++RV I L + ++++LDEPT+ L P+ ++
Sbjct: 119 RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMQPEVIVLDEPTAGLDPVGASKI 178
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV--GTVK 222
K L +L ++G+T+I TH + V D+V V+ G+++ GT K
Sbjct: 179 MKLLYDLNKKGMTIIISTHDVDLVPVYADKVYVMYDGKILKEGTPK 224
Score = 94.4 bits (231), Expect = 3e-18
Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 14/233 (6%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
I++ +DL+ + G +KG++F++++GE++ + G G G+ L GI P KG++
Sbjct: 3 IVETKDLYFRYPDGTAVLKGINFKVKKGEMVSLLGPNGAGKSTLFLHFNGILRPTKGEVL 62
Query: 315 LLGKDVT---KLPAHERYKSGLAYV-PDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISW 370
+ GK + K R GL + PD + + V E+V L+ L K +
Sbjct: 63 IKGKPIKYDKKSLVEVRKTVGLVFQNPDDQ----IFAPTVKEDVAFGPLNLGLPKEEVEK 118
Query: 371 DKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDI 430
+ +E FE P HLSGG +++V + + +P+VIV+ EPT GLD
Sbjct: 119 RVKEALKAVGMEGFE------NKPPHHLSGGQKKRVAIAGILAMQPEVIVLDEPTAGLDP 172
Query: 431 GATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
I K L L + I++ + D+D + +D+V V+Y+GKI+ G +E
Sbjct: 173 VGASKIMKLLYDLNKKGMTIIISTHDVDLVPVYADKVYVMYDGKILKEGTPKE 225
>sp|Q52815|AAPP_RHILV GENERAL L-AMINO ACID TRANSPORT ATP-BINDING PROTEIN AAPP
>gi|1154897|emb|CAA57936.1| (X82596) general amino acid
ABC type transporter [Rhizobium leguminosarum]
Length = 257
Score = 128 bits (319), Expect = 1e-28
Identities = 79/217 (36%), Positives = 126/217 (57%), Gaps = 3/217 (1%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AVE+ + K Y D V LR +NLKV GE + G +G+GKST++R + + KG+I
Sbjct: 17 AVEIVNMNKWYGDFHV-LRDINLKVMRGERIVIAGPSGSGKSTMIRCINRLEEHQKGKIV 75
Query: 63 VFGKEVSFN-GPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
V G E++ + D +R + MV+QHF L P T+LEN LA + + K E++A
Sbjct: 76 VDGTELTNDLKKIDEVRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPK-KQAEEVAM 134
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
++ V N+ L G QQRV I ++L +N KI++ DEPTS L P +KE+ T
Sbjct: 135 HFLKRVKIPEQANKYPGQLSGGQQQRVAIARSLCMNPKIMLFDEPTSALDPEMIKEVLDT 194
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ L E G+T++ +TH++ +++ +RV + +G++V
Sbjct: 195 MVGLAEEGMTMLCVTHEMGFARQVANRVIFMDQGQIV 231
>emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding protein
[Alicyclobacillus acidocaldarius]
Length = 393
Score = 128 bits (319), Expect = 1e-28
Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 6/227 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E G+ K+YP G ++RGV+ ++ EGE+ GLLG +G+GK+T++R++ G +PTKG++ +
Sbjct: 3 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 62
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
GK V+ P + + +V+Q++ L TV +N+ + + +++ +E
Sbjct: 63 GGKRVTDLPPQ---KRNVGLVFQNYALFQHMTVYDNVSFGLR--EKRVPKDEMDARVREL 117
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
+R + E N +L G QQRV + +AL ++L+ DEP + + +EL +R
Sbjct: 118 LRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVR 177
Query: 184 NL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
+ E G+T +F+TH +E E+ DRV VL G V EV E+
Sbjct: 178 QVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 224
Score = 108 bits (267), Expect = 2e-22
Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 19/229 (8%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G +V+GVSF++REGE++G+ G G+G+ + +AG+ P KG + + GK VT LP
Sbjct: 15 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--- 71
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVV--ENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFE 385
P R VGLV + V N+S L + R+ D+ + E++
Sbjct: 72 ---------PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR 122
Query: 386 VLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD 445
+ + + P LSGG QQ+V + R + P+V++ EP +D +R + ++ D
Sbjct: 123 LESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 181
Query: 446 ERKGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLL 492
E G+ + ++ D +E L+++DRV V++EG + G EE EK G L
Sbjct: 182 E-MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEE-VYEKPGTL 228
>dbj|BAB07200.1| (AP001518) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 338
Score = 128 bits (319), Expect = 1e-28
Identities = 86/262 (32%), Positives = 145/262 (54%), Gaps = 10/262 (3%)
Query: 4 VEMSGIVKVYP---DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+ + GI KV+ V A+ GVNLK+ EGEI G++G +GAGKSTL+R+L +PT+G
Sbjct: 2 ISLDGIRKVFKAKRGSVTAVDGVNLKINEGEIFGVIGYSGAGKSTLIRMLNMLERPTEGS 61
Query: 61 IKVFGKEVSFNGPWD--AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+ V GK++S D R+ I M++QHF L+ + TV +N+ + G+ + EK
Sbjct: 62 VIVAGKDLSKLSDRDLRIERQKIGMIFQHFNLLWSRTVRKNIAFPLEI--AGVPKKEREK 119
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
E + VG E L G +QRV I +AL N K+L+ DE TS L P +
Sbjct: 120 RVDELINLVGLEGREEAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPKTTDSI 179
Query: 179 FKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
L ++ E+ G+T++ ITH++ +++I RV V+ G+VV +V + + +
Sbjct: 180 LDLLVDINEKLGLTIVLITHEMHVIRKICHRVAVMEAGKVVEEGPVLDVFRK--PKEHIT 237
Query: 238 RDVVMEISKGKSTPGNTILKVE 259
++ V ++++ + T + + +V+
Sbjct: 238 KEFVKQVTEPEETVQHLLNEVK 259
Score = 81.5 bits (198), Expect = 2e-14
Identities = 69/224 (30%), Positives = 113/224 (49%), Gaps = 20/224 (8%)
Query: 264 KDDRG-LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTK 322
K RG + AV GV+ ++ EGEI G+ G G G+ L L + P +G + + GKD++K
Sbjct: 12 KAKRGSVTAVDGVNLKINEGEIFGVIGYSGAGKSTLIRMLNMLERPTEGSVIVAGKDLSK 71
Query: 323 LPAH----ERYKSGLAYVPDSRRVGLVLDMNVVENVVL-TNLSRVLHKGRISWDKANEMT 377
L ER K G+ + + L+ V +N+ ++ V K R + +E+
Sbjct: 72 LSDRDLRIERQKIGMIF----QHFNLLWSRTVRKNIAFPLEIAGVPKKEREK--RVDELI 125
Query: 378 NEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIR 437
N V L +A LSGG +Q+V + R + PKV++ E T LD T+ I
Sbjct: 126 NLV-----GLEGREEAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPKTTDSIL 180
Query: 438 KTLLKLRDERKG--ILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
L+ + +E+ G I+LI+ ++ I ++ RVAV+ GK++ G
Sbjct: 181 DLLVDI-NEKLGLTIVLITHEMHVIRKICHRVAVMEAGKVVEEG 223
>pir||C72303 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981569|gb|AAD36105.1|AE001764_8 (AE001764)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 293
Score = 128 bits (318), Expect = 2e-28
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 14/228 (6%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M+ VE+ + K Y + GV VEEGEI G +G NGAGK+T +R+L G I P G
Sbjct: 1 MSVVEVRDLTKYYGKSR-GVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSGL 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
++FGK+V G IR+ + + + P TV E L + S EK+
Sbjct: 60 AEIFGKDVLKEGK--EIRKNVGYIPGEVSFYPEVTVEEFLRYSA---------SFYEKVD 108
Query: 121 KEKMREVG--FEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
+ ++E+ F + + +++L +G +++V I++ALM K+LILDEPT+ L PI
Sbjct: 109 WDYVKELCGVFSLDTKKRIKELSMGNKKKVAIVQALMHRPKLLILDEPTNGLDPIVQNTF 168
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
F+ L+N KE+G TV F +H L EV+ + DRV +++ G ++ K +
Sbjct: 169 FEILKNEKEKGTTVFFSSHILSEVERLCDRVAMIKDGRIIRVEKVENL 216
Score = 98.7 bits (242), Expect = 1e-19
Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 20/237 (8%)
Query: 254 TILKVEDL--WVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKG 311
++++V DL + RG V+GV+F + EGEI G G G G+ L G+ P+ G
Sbjct: 2 SVVEVRDLTKYYGKSRG---VEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSG 58
Query: 312 KIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWD 371
E+ GKDV K + + + Y+P V ++ V E S ++ ++ WD
Sbjct: 59 LAEIFGKDVLK--EGKEIRKNVGYIPGE--VSFYPEVTVEE---FLRYSASFYE-KVDWD 110
Query: 372 KANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIG 431
E+ V TK IK LS GN++KV + + ++ PK++++ EPT GLD
Sbjct: 111 YVKELCG-------VFSLDTKKRIKELSMGNKKKVAIVQALMHRPKLLILDEPTNGLDPI 163
Query: 432 ATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEK 488
+ L +++ + S L E+ +L DRVA+I +G+I+ + K E E+
Sbjct: 164 VQNTFFEILKNEKEKGTTVFFSSHILSEVERLCDRVAMIKDGRIIRVEKVENLKGER 220
>gb|AAF99566.1| (AF167161) unknown [Staphylococcus aureus]
Length = 309
Score = 128 bits (318), Expect = 2e-28
Identities = 75/227 (33%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E++ + K Y +A+ +++ VE G+I+G LG NGAGK+T +R+L G IKPTKG IK+
Sbjct: 8 IEINNLTKQY-GSQIAVNNLSITVESGQIYGFLGRNGAGKTTTIRMLLGLIKPTKGNIKI 66
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
F KE F I + I + + T EN L+IN I E +E
Sbjct: 67 FEKE--FESNKTEILKNIGAMVETPGFYSNLTAKEN-----LTINAKILGIQKENAIEEV 119
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
+ VG ++ ++ +G++QR+ I +AL+ N ++LILDEPT+ L PI +KE+ K ++
Sbjct: 120 LEIVGLASEKVKLFKNYSLGMKQRLGIARALLHNPELLILDEPTNGLDPIGIKEIRKLIK 179
Query: 184 NL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
+L + R IT++ +H L E++++ D+V ++ G ++ + ++ ++
Sbjct: 180 DLAQSRNITILISSHILSEIEQLVDKVGIIHNGVLLEEIMYEDLKKK 226
Score = 72.2 bits (174), Expect = 1e-11
Identities = 59/227 (25%), Positives = 101/227 (43%), Gaps = 19/227 (8%)
Query: 253 NTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGK 312
N I+++ +L K AV +S + G+I G G G G+ L G+ P KG
Sbjct: 5 NNIIEINNL-TKQYGSQIAVNNLSITVESGQIYGFLGRNGAGKTTTIRMLLGLIKPTKGN 63
Query: 313 IELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDK 372
I++ K+ G L N+ N + + +
Sbjct: 64 IKIFEKEFESNKTEILKNIGAMVETPGFYSNLTAKENLTINAKILGIQK----------- 112
Query: 373 ANEMTNEVVEKFEVL-LSSTKAPI-KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDI 430
N + E E++ L+S K + K+ S G +Q++ + R ++ P+++++ EPT GLD
Sbjct: 113 ----ENAIEEVLEIVGLASEKVKLFKNYSLGMKQRLGIARALLHNPELLILDEPTNGLDP 168
Query: 431 GATEFIRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIM 476
+ IRK + L R +LIS+ L EI QL D+V +I+ G ++
Sbjct: 169 IGIKEIRKLIKDLAQSRNITILISSHILSEIEQLVDKVGIIHNGVLL 215
>pir||C82442 probable peptide ABC transporter, ATP-binding protein VCA0588
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9657999|gb|AAF96490.1| (AE004389) peptide ABC
transporter, ATP-binding protein, putative [Vibrio
cholerae]
Length = 530
Score = 128 bits (318), Expect = 2e-28
Identities = 132/502 (26%), Positives = 233/502 (46%), Gaps = 59/502 (11%)
Query: 22 GVNLKVEEGEIHGLLGENGAGKST----LMRILYGEIKPTKGEIKVFGKEVSFNGPWDAI 77
GV+L + GE L+GE+G+GKS ++R+L KG + F G D +
Sbjct: 27 GVSLTIARGETLALVGESGSGKSVTANAILRLL------PKGSAHYLSGSIHF-GDVDTL 79
Query: 78 REG-----------IAMVYQH--FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKM 124
R I M++Q +L P + + L + L+I+ G++ + E+ A E +
Sbjct: 80 RCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQL-VETLAIHRGLRATAAEQKAIEWL 138
Query: 125 REVGF---EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+VG E+ +N +L G +QRV I AL+ ++LI DEPT+ L ++
Sbjct: 139 GKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDL 198
Query: 182 LRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMVQ 237
L++L+ E G+ ++FITH L V+ I DRV V++ G++V T + + ++
Sbjct: 199 LKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLIN 258
Query: 238 RDVVMEISKGKSTP----GNTILKVEDLWV----------KDDRGLDAVKGVSFELREGE 283
D +G P T+L+ E L V + + AV +SF L +G+
Sbjct: 259 AD-----PRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQ 313
Query: 284 ILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER--YKSGLAYVPDSRR 341
LG+ G G+G+ A+ + + +G I G+D+ L E Y+S + V
Sbjct: 314 SLGLVGESGSGKSTTGMAILKL-LASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPY 372
Query: 342 VGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGG 401
L M+V + V+ RV +++ D+ + V+++ + + + SGG
Sbjct: 373 SALNPRMSVAQ--VIGEGLRV--HSQLNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGG 428
Query: 402 NQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE-RKGILLISTDLDEI 460
+Q++ + R ++ +P+ I++ EPT LD + L L+ + + L IS DL I
Sbjct: 429 QRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVI 488
Query: 461 LQLSDRVAVIYEGKIMSIGKTE 482
L V+ G+I+ G+T+
Sbjct: 489 RALCHHTIVMKAGEIVEHGETQ 510
Score = 73.7 bits (178), Expect = 4e-12
Identities = 66/239 (27%), Positives = 111/239 (45%), Gaps = 24/239 (10%)
Query: 255 ILKVEDLWVK---DDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKG 311
+LK+++L V + +GVS + GE L + G G+G+ A A+ +R+ KG
Sbjct: 5 VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAI--LRLLPKG 62
Query: 312 KIELLGK-----DVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVL--- 363
L DV L ER G+ R+G++ +V L + + L
Sbjct: 63 SAHYLSGSIHFGDVDTLRCSERALRGIR----GGRIGMIFQEPMVSLNPLHKIGKQLVET 118
Query: 364 ---HKGRISWDKANEMTNEVVEKFEVLLSSTK--APIKHLSGGNQQKVMVGREIIREPKV 418
H+G + A + E + K + K A LSGG +Q+VM+ +I EP++
Sbjct: 119 LAIHRG-LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPEL 177
Query: 419 IVVSEPTQGLDIGATEFIRKTLLKLRDE-RKGILLISTDLDEILQLSDRVAVIYEGKIM 476
++ EPT LD+ I L L+ E +L I+ DL + +++DRVAV+ G+++
Sbjct: 178 LIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLV 236
Score = 71.8 bits (173), Expect = 2e-11
Identities = 56/219 (25%), Positives = 118/219 (53%), Gaps = 10/219 (4%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTL-MRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
+ A+ ++ + +G+ GL+GE+G+GKST M IL ++ ++G I+ G+++ +
Sbjct: 299 IKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAIL--KLLASQGAIRFAGQDLQALKRRE 356
Query: 76 AI--REGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEV 131
+ R + +V+Q + L P +V + + L ++ + +++ M+EVG +V
Sbjct: 357 MLPYRSKMQVVFQDPYSALNPRMSVAQVIGEG-LRVHSQLNDDEIDHAICAVMQEVGLDV 415
Query: 132 PL-NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-G 189
+ + G +QR+ I +AL+L + ++LDEPTS L ++ L++L+++
Sbjct: 416 DTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQ 475
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+T +FI+H L ++ + V++ GE+V +T + E
Sbjct: 476 LTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFE 514
>pir||B83389 probable ATP-binding component of ABC transporter PA2061 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948069|gb|AAG05449.1|AE004632_8 (AE004632) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 127 bits (317), Expect = 2e-28
Identities = 135/506 (26%), Positives = 228/506 (44%), Gaps = 73/506 (14%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKS----TLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
++G++ + GE L+GE+G+GKS L+R+L G + G +++ G+E+ P
Sbjct: 21 VKGIDFSLRAGETLALVGESGSGKSQTAHALLRLLPGAAR-LGGSVRLDGEELLALSPQA 79
Query: 76 --AIR-EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI------SDVEKLAKEKMRE 126
AIR + I MV+Q T L L + G+++ + + E +
Sbjct: 80 LLAIRGQRIGMVFQE-----PMTSLNPLQRIGRQVGEGLRLHRRLRGAALRGRVLELLEL 134
Query: 127 VGFEVP---LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
G E P L L G +QRV + AL ++LI DEPT+ L K L + L+
Sbjct: 135 AGLEQPRRLLEAYPHQLSGGQRQRVMLAMALACEPQLLIADEPTTALDVTVQKRLLELLQ 194
Query: 184 NLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVG---------------TVKTSEVS 227
+L+ R G+ ++ I+H L V+ + DRV V+R G++V T E
Sbjct: 195 SLQRRLGMAILLISHDLNLVRRVADRVCVMRDGQIVEENACETLFRSPRHPYTRLLIEAE 254
Query: 228 ERELARMMVQRDVVMEI---SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEI 284
LA + R+ +E+ S PG W++ GL AV VS LR G
Sbjct: 255 PGGLAEPVACRETCLEVRALSLDYPAPGG--------WLRRRAGLRAVHEVSLRLRRGST 306
Query: 285 LGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTK------LPAHERYKSGLAYVPD 338
LGI G G+G+ L +AL + +P +G+I G+ + + LP ++++
Sbjct: 307 LGIVGESGSGKSSLGQALLRL-LPAEGQILFQGERLDRLHGKRLLPLRRQFQAVFQDPYG 365
Query: 339 SRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKF-EVLLSS--TKAPI 395
S L ++ V E + + + A E V+E EV L +
Sbjct: 366 SLNPRLSVEQIVGEGLRIHGIG-----------DAGERRARVLEALREVGLDEPCLERYP 414
Query: 396 KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI--LLI 453
SGG +Q++ + R ++ +P +I++ EPT LD + + L +L+ R G+ L I
Sbjct: 415 HEFSGGQRQRIAIARTLVLKPALILLDEPTSALDRSVQCQVVELLRRLQ-RRHGLSYLFI 473
Query: 454 STDLDEILQLSDRVAVIYEGKIMSIG 479
S DL + L+ + V+ +G+++ G
Sbjct: 474 SHDLAVVRALAHDILVLKDGRVVEQG 499
Score = 78.4 bits (190), Expect = 2e-13
Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 20/215 (9%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVS--FNGP 73
G+ A+ V+L++ G G++GE+G+GKS+L + L + P +G+I G+ +
Sbjct: 290 GLRAVHEVSLRLRRGSTLGIVGESGSGKSSLGQALL-RLLPAEGQILFQGERLDRLHGKR 348
Query: 74 WDAIREGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDV----EKLAK--EKMR 125
+R V+Q + +L P +V + + G++I + E+ A+ E +R
Sbjct: 349 LLPLRRQFQAVFQDPYGSLNPRLSVEQ-------IVGEGLRIHGIGDAGERRARVLEALR 401
Query: 126 EVGFEVP-LNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRN 184
EVG + P L + G +QR+ I + L+L +++LDEPTS L ++ + LR
Sbjct: 402 EVGLDEPCLERYPHEFSGGQRQRIAIARTLVLKPALILLDEPTSALDRSVQCQVVELLRR 461
Query: 185 LKER-GITVIFITHKLKEVKEITDRVTVLRRGEVV 218
L+ R G++ +FI+H L V+ + + VL+ G VV
Sbjct: 462 LQRRHGLSYLFISHDLAVVRALAHDILVLKDGRVV 496
Score = 73.4 bits (177), Expect = 6e-12
Identities = 66/236 (27%), Positives = 114/236 (47%), Gaps = 24/236 (10%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEK---- 310
+L+VE+L V VKG+ F LR GE L + G G+G+ + A AL + +P
Sbjct: 5 LLRVENLSVAYG-DTQVVKGIDFSLRAGETLALVGESGSGKSQTAHALLRL-LPGAARLG 62
Query: 311 GKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISW 370
G + L G+++ L +R+G+V + L + R + +G
Sbjct: 63 GSVRLDGEELLALSPQA------LLAIRGQRIGMVFQEPMTSLNPLQRIGRQVGEGLRLH 116
Query: 371 DKAN--EMTNEVVEKFEVLLSSTKAPIK-------HLSGGNQQKVMVGREIIREPKVIVV 421
+ + V+E E L+ + P + LSGG +Q+VM+ + EP++++
Sbjct: 117 RRLRGAALRGRVLELLE--LAGLEQPRRLLEAYPHQLSGGQRQRVMLAMALACEPQLLIA 174
Query: 422 SEPTQGLDIGATEFIRKTLLKL-RDERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
EPT LD+ + + + L L R ILLIS DL+ + +++DRV V+ +G+I+
Sbjct: 175 DEPTTALDVTVQKRLLELLQSLQRRLGMAILLISHDLNLVRRVADRVCVMRDGQIV 230
>gi|11498429 branched-chain amino acid ABC transporter, ATP-binding protein
(braG-2) [Archaeoglobus fulgidus]
>gi|7445760|pir||G69352 branched-chain amino acid ABC
transporter, ATP-binding protein (braG-2) homolog -
Archaeoglobus fulgidus >gi|2649778|gb|AAB90412.1|
(AE001047) branched-chain amino acid ABC transporter,
ATP-binding protein (braG-2) [Archaeoglobus fulgidus]
Length = 248
Score = 127 bits (316), Expect = 3e-28
Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 10/224 (4%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G++AL V ++ +GE+ G++G NGAGK+TL ++ G KP +G I GK ++ P
Sbjct: 13 GLIALNNVTFEIRKGEVLGIIGPNGAGKTTLFNVISGLYKPDEGVIIFEGKNITTMPPHK 72
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLS-----INPGIKISDVEKLAKEKMREVGFE 130
+R GI+ +Q +L + NL + + + + ++ + ++ KE M + F
Sbjct: 73 IVRLGISRTFQTVSLYFNLPAIGNLLITLTAWYRSGVLSALREENGDETFKEAMELLNF- 131
Query: 131 VPLNEI----VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK 186
V L+E V++LP Q+R+ I AL K+L+LDEPT+ L E + + +R LK
Sbjct: 132 VGLDEKAFTPVKNLPQEAQRRLSIAIALATKPKLLLLDEPTAGLNLEETDRILEIIRTLK 191
Query: 187 ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
ERG+TV I HK++ + ++DR+ VL GE++ E+ E E
Sbjct: 192 ERGVTVAIIEHKMRFIMGVSDRIVVLDSGEIIAEGSPKEIVENE 235
Score = 102 bits (253), Expect = 7e-21
Identities = 66/234 (28%), Positives = 131/234 (55%), Gaps = 9/234 (3%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+LKVE + ++ GL A+ V+FE+R+GE+LGI G G G+ L ++G+ P++G I
Sbjct: 1 MLKVEGVGIRFG-GLIALNNVTFEIRKGEVLGIIGPNGAGKTTLFNVISGLYKPDEGVII 59
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRIS---WD 371
GK++T +P H+ + G++ + V L ++ + N+++T L+ G +S +
Sbjct: 60 FEGKNITTMPPHKIVRLGISRT--FQTVSLYFNLPAIGNLLIT-LTAWYRSGVLSALREE 116
Query: 372 KANEMTNEVVEKFEVLLSSTKA--PIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD 429
+E E +E + KA P+K+L Q+++ + + +PK++++ EPT GL+
Sbjct: 117 NGDETFKEAMELLNFVGLDEKAFTPVKNLPQEAQRRLSIAIALATKPKLLLLDEPTAGLN 176
Query: 430 IGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ T+ I + + L++ + +I + I+ +SDR+ V+ G+I++ G +E
Sbjct: 177 LEETDRILEIIRTLKERGVTVAIIEHKMRFIMGVSDRIVVLDSGEIIAEGSPKE 230
>gi|11498623 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445942|pir||B69377 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649576|gb|AAB90224.1| (AE001033) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 228
Score = 127 bits (316), Expect = 3e-28
Identities = 84/224 (37%), Positives = 128/224 (56%), Gaps = 10/224 (4%)
Query: 1 MTAVEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT 57
M VE+ + K+Y V AL GV++ VEEGE ++G +G+GKSTL+ ++ KPT
Sbjct: 1 MKVVELRNVYKIYRTEYYEVRALDGVSMDVEEGEFVVIMGPSGSGKSTLLNLIGCLDKPT 60
Query: 58 KGEIKVFGKEVSF---NGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS 114
+GE+ + G E S N + R+ I ++Q + L+PT T LEN+ L M I G+
Sbjct: 61 EGEVLINGVETSSLNDNRLTELRRDTIGFIFQTYNLIPTLTALENVELPM--IFKGVGRR 118
Query: 115 DVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIE 174
+ E+ AKE ++ VG E +N ++ G QQRV I +AL N KIL+ DEPT L
Sbjct: 119 EREERAKELLKNVGLEKEMNRKPNEMSGGQQQRVAIARALANNPKILLCDEPTGNLDTKS 178
Query: 175 VKELFKTLRNLKE-RGITVIFITHKLKEVKEITDRVTVLRRGEV 217
+++ + +R+ E G+TVI +TH + + DRV LR G++
Sbjct: 179 GEQVMEIIRHQNEVLGVTVILVTHD-PSLAKYGDRVIRLRDGKI 221
Score = 70.6 bits (170), Expect = 4e-11
Identities = 53/212 (25%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH---E 327
A+ GVS ++ EGE + I G G+G+ L + + P +G++ + G + + L + E
Sbjct: 22 ALDGVSMDVEEGEFVVIMGPSGSGKSTLLNLIGCLDKPTEGEVLINGVETSSLNDNRLTE 81
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
+ + ++ + L+ + +ENV L ++ KG + + E E+++ +
Sbjct: 82 LRRDTIGFI--FQTYNLIPTLTALENVELP----MIFKG-VGRREREERAKELLKNVGLE 134
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+ P +SGG QQ+V + R + PK+++ EPT LD + E + + +++ ++E
Sbjct: 135 KEMNRKP-NEMSGGQQQRVAIARALANNPKILLCDEPTGNLDTKSGEQVME-IIRHQNEV 192
Query: 448 KGILLISTDLD-EILQLSDRVAVIYEGKIMSI 478
G+ +I D + + DRV + +GKI S+
Sbjct: 193 LGVTVILVTHDPSLAKYGDRVIRLRDGKIESV 224
>gb|AAK41395.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 275
Score = 127 bits (315), Expect = 4e-28
Identities = 73/219 (33%), Positives = 127/219 (57%), Gaps = 9/219 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M +E++ + K Y ++A + ++V+EGEI LLG NGAGK+TL++ +YGE+ PTKGE
Sbjct: 1 MYVIEVNNVWKAYGK-IIANEDITMRVKEGEIVALLGPNGAGKTTLVKQIYGELTPTKGE 59
Query: 61 IKVFGKEVSFNGPWDA-IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
I+V GK+ P D +++ + ++ Q TV +N+Y + G +++K
Sbjct: 60 IRVLGKK-----PTDRHVKKFLGVIPQECEPYGDLTVWDNIYY--MGRLKGASKDEIKKR 112
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+E + + N + DL G+++R I AL+ N K+LILDEPT+ L P +E++
Sbjct: 113 GEELLERLDLRSKRNTLARDLSGGLKRRTLIAMALINNPKLLILDEPTTGLDPEARREVW 172
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ L N+++ G +++ TH L E + + D++ L R +V
Sbjct: 173 EILLNMRKEGQSMLLTTHYLDEAERLADKIYFLSRKIIV 211
Score = 86.2 bits (210), Expect = 7e-16
Identities = 61/217 (28%), Positives = 113/217 (51%), Gaps = 21/217 (9%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+++V ++W K + A + ++ ++EGEI+ + G G G+ L + + G P KG+I
Sbjct: 3 VIEVNNVW-KAYGKIIANEDITMRVKEGEIVALLGPNGAGKTTLVKQIYGELTPTKGEIR 61
Query: 315 LLGKDVTKLPAHERYKSGLAYVP-DSRRVGLVLDMNVVENVVLTNLSRVLHKGRI---SW 370
+LGK P K L +P + G D+ V +N+ + GR+ S
Sbjct: 62 VLGKK----PTDRHVKKFLGVIPQECEPYG---DLTVWDNIY--------YMGRLKGASK 106
Query: 371 DKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDI 430
D+ + E++E+ + L S + LSGG +++ ++ +I PK++++ EPT GLD
Sbjct: 107 DEIKKRGEELLERLD-LRSKRNTLARDLSGGLKRRTLIAMALINNPKLLILDEPTTGLDP 165
Query: 431 GATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRV 467
A + + LL +R E + +LL + LDE +L+D++
Sbjct: 166 EARREVWEILLNMRKEGQSMLLTTHYLDEAERLADKI 202
>gi|11498288 glutamine ABC transporter, ATP-binding protein (glnQ)
[Archaeoglobus fulgidus] >gi|7442524|pir||H69334
glutamine transport protein glnQ - Archaeoglobus
fulgidus >gi|2649950|gb|AAB90561.1| (AE001058) glutamine
ABC transporter, ATP-binding protein (glnQ)
[Archaeoglobus fulgidus]
Length = 242
Score = 126 bits (313), Expect = 6e-28
Identities = 73/209 (34%), Positives = 122/209 (57%), Gaps = 4/209 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDA--I 77
L+GV +KVE+GE+ ++G +G+GKSTL+R + +PT G+I + G +++ N D +
Sbjct: 19 LKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILLDGVDIT-NSKIDINKV 77
Query: 78 REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIV 137
R+ I +V+Q F L P T L+N+ LA + I K + E+L + +VG E +
Sbjct: 78 RQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKMSK-REAEELGMRLLEKVGLEDKADYYP 136
Query: 138 EDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITH 197
L G QQRV I +AL +N ++++ DE TS L P VKE+ ++ L G+T++ +TH
Sbjct: 137 AQLSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDVMKQLARDGMTMVVVTH 196
Query: 198 KLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
++ +E+ DRV + G +V K ++
Sbjct: 197 EMGFAREVGDRVIFMDGGVIVEEGKPEQI 225
Score = 74.1 bits (179), Expect = 3e-12
Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 12/218 (5%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVT--KLPAH 326
L+ +KGV+ ++ +GE++ I G G+G+ L + + P GKI L G D+T K+ +
Sbjct: 16 LEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILLDGVDITNSKIDIN 75
Query: 327 E-RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFE 385
+ R + G+ + ++ L + ++NV L + ++S +A E+ ++EK
Sbjct: 76 KVRQRIGIVF----QQFNLFPHLTALQNVTLAPIKIK----KMSKREAEELGMRLLEKVG 127
Query: 386 VLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD 445
+ + P + LSGG QQ+V + R + P+V++ E T LD + + + +L
Sbjct: 128 LEDKADYYPAQ-LSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDVMKQLAR 186
Query: 446 ERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ +++++ ++ ++ DRV + G I+ GK E+
Sbjct: 187 DGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEEGKPEQ 224
>dbj|BAA77876.1| (D83536) ATP-binding protein ABC. [Escherichia coli]
Length = 343
Score = 126 bits (313), Expect = 6e-28
Identities = 83/250 (33%), Positives = 138/250 (55%), Gaps = 11/250 (4%)
Query: 4 VEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+++S I KV+ G + AL V+L V G+I+G++G +GAGKSTL+R + +PT+G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 61 IKVFGKEVS--FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+ V G+E++ R I M++QHF L+ + TV N+ L + N +V++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALRLELDN--TPKDEVKR 119
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
E + VG + +L G +QRV I +AL N K+L+ DE TS L P + +
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 179 FKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARM 234
+ L+++ R G+T++ ITH++ VK I D V V+ GE++ SEV + LA+
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQK 239
Query: 235 MVQRDVVMEI 244
+Q + ++I
Sbjct: 240 FIQSTLHLDI 249
Score = 76.9 bits (186), Expect = 5e-13
Identities = 62/218 (28%), Positives = 105/218 (47%), Gaps = 21/218 (9%)
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
R + A+ VS + G+I G+ G G G+ L + + P +G + + G+++T L
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 75
Query: 327 ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEV 386
E K+ R++G++ ++ L + V + + N +EV +
Sbjct: 76 ELTKA-------RRQIGMIF-----QHFNLLSSRTVFGNVALRLELDNTPKDEVKRRVTE 123
Query: 387 LLSSTKAPIKH------LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTL 440
LLS KH LSGG +Q+V + R + PKV++ E T LD T I + L
Sbjct: 124 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-L 182
Query: 441 LKLRDERKG--ILLISTDLDEILQLSDRVAVIYEGKIM 476
LK + R G ILLI+ ++D + ++ D VAVI G+++
Sbjct: 183 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220
>sp|P30750|ABC_ECOLI ATP-BINDING PROTEIN ABC >gi|7445928|pir||G64744 probable ABC-type
transport protein abc - Escherichia coli
>gi|1552775|gb|AAB08627.1| (U70214) ATP-binding protein
[Escherichia coli] >gi|1786398|gb|AAC73310.1| (AE000129)
ATP-binding component of a transporter [Escherichia coli
K12]
Length = 343
Score = 126 bits (313), Expect = 6e-28
Identities = 83/250 (33%), Positives = 138/250 (55%), Gaps = 11/250 (4%)
Query: 4 VEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+++S I KV+ G + AL V+L V G+I+G++G +GAGKSTL+R + +PT+G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 61 IKVFGKEVS--FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+ V G+E++ R I M++QHF L+ + TV N+ L + N +V++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN--TPKDEVKR 119
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
E + VG + +L G +QRV I +AL N K+L+ DE TS L P + +
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 179 FKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARM 234
+ L+++ R G+T++ ITH++ VK I D V V+ GE++ SEV + LA+
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQK 239
Query: 235 MVQRDVVMEI 244
+Q + ++I
Sbjct: 240 FIQSTLHLDI 249
Score = 76.9 bits (186), Expect = 5e-13
Identities = 62/218 (28%), Positives = 105/218 (47%), Gaps = 21/218 (9%)
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
R + A+ VS + G+I G+ G G G+ L + + P +G + + G+++T L
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 75
Query: 327 ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEV 386
E K+ R++G++ ++ L + V + + N +EV +
Sbjct: 76 ELTKA-------RRQIGMIF-----QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 123
Query: 387 LLSSTKAPIKH------LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTL 440
LLS KH LSGG +Q+V + R + PKV++ E T LD T I + L
Sbjct: 124 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-L 182
Query: 441 LKLRDERKG--ILLISTDLDEILQLSDRVAVIYEGKIM 476
LK + R G ILLI+ ++D + ++ D VAVI G+++
Sbjct: 183 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220
>pir||T35675 probable ABC-transport system ATP binding protein - Streptomyces
coelicolor >gi|2661682|emb|CAA15787.1| (AL009199)
probable ABC-transport system ATP binding protein
[Streptomyces coelicolor A3(2)]
Length = 260
Score = 125 bits (312), Expect = 8e-28
Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 2/217 (0%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDA 76
V AL V L+V GE+ L+G+NGAGKSTL++ + G +G I+ G+ VS N P DA
Sbjct: 19 VQALTDVELEVHAGEVVALVGDNGAGKSTLVKTIAGVHPIDEGAIEWDGRSVSINRPHDA 78
Query: 77 IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS-DVEKLAKEKMREVGFEVPLNE 135
GIA VYQ L V+ NLYL G+ ++E+ ++E + + +P
Sbjct: 79 QSLGIATVYQDLALCDNIDVVGNLYLGREIRRRGVLDEVEMERRSRELLDTLSIRIPSVR 138
Query: 136 I-VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIF 194
I + L G +Q V I ++++ K++ILDEPT+ L + ++ + L+ERG VI
Sbjct: 139 IPIASLSGGQRQVVAIARSMLGEPKLVILDEPTAALGVEQTAQVLDLVERLRERGHAVIL 198
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSEREL 231
I+H + +VK + D+V VLR G G + S+ E+
Sbjct: 199 ISHNMADVKAVADKVAVLRLGRNNGVFEVKSTSQEEI 235
Score = 97.9 bits (240), Expect = 2e-19
Identities = 56/221 (25%), Positives = 118/221 (53%), Gaps = 4/221 (1%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
+ A+ V E+ GE++ + G G G+ L + +AG+ ++G IE G+ V+ H+
Sbjct: 19 VQALTDVELEVHAGEVVALVGDNGAGKSTLVKTIAGVHPIDEGAIEWDGRSVSINRPHDA 78
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
G+A V + L +++VV N+ L + +G + + + E+++ + +
Sbjct: 79 QSLGIATVYQD--LALCDNIDVVGNLYLGR--EIRRRGVLDEVEMERRSRELLDTLSIRI 134
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
S + PI LSGG +Q V + R ++ EPK++++ EPT L + T + + +LR+
Sbjct: 135 PSVRIPIASLSGGQRQVVAIARSMLGEPKLVILDEPTAALGVEQTAQVLDLVERLRERGH 194
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
++LIS ++ ++ ++D+VAV+ G+ + + + + E++
Sbjct: 195 AVILISHNMADVKAVADKVAVLRLGRNNGVFEVKSTSQEEI 235
>gb|AAD41366.1|AF151698_3 (AF151698) GlnP/GlnQ homolog [Agrobacterium tumefaciens]
Length = 502
Score = 125 bits (312), Expect = 8e-28
Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 2/199 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L+GV+L V+ G + ++G +G+GKSTL+R L ++P G+I + G+ + P + +R
Sbjct: 281 LKGVDLSVKPGSVTCIIGPSGSGKSTLLRGLNRLVEPKSGDILIDGESILAMKP-ETLRR 339
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
+ MV+QHF L P T LEN+ L++ I G+ ++ E++AK + +VG +
Sbjct: 340 RVGMVFQHFNLFPDHTALENVMLSLKKIK-GLPAAEAERIAKAGLADVGLASRQHHRPGG 398
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKL 199
L G QQRV I +AL + ++++ DE TS L P VK + + L RG+T++ +TH++
Sbjct: 399 LSGGQQQRVAIARALAMEPEVILFDEVTSALDPELVKGVLNLMAELGTRGMTMVVVTHEM 458
Query: 200 KEVKEITDRVTVLRRGEVV 218
+ + D+V + G VV
Sbjct: 459 GFARRVADQVVFMDEGRVV 477
>pir||E81936 probable amino acid permease ATP-binding protein NMA0900 [imported]
- Neisseria meningitidis (group A strain Z2491)
>gi|7379613|emb|CAB84178.1| (AL162754) putative amino
acid permease ATP-binding protein [Neisseria
meningitidis Z2491]
Length = 242
Score = 123 bits (307), Expect = 3e-27
Identities = 71/200 (35%), Positives = 114/200 (56%), Gaps = 2/200 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSF-NGPWDAIR 78
+ GVNL++++GE+ + G +G+GKSTL+R + GEI V G V+ + IR
Sbjct: 17 INGVNLEIKKGEVVVVCGPSGSGKSTLIRTVNQLESIESGEIWVDGVNVADPKTDLNKIR 76
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVE 138
E + V+Q F L P TVLEN+ LA + + G EK A E + VG +
Sbjct: 77 EEVGFVFQSFNLYPHLTVLENITLAPMKVK-GQNAEQAEKKAMELLERVGLAHKKDAFPS 135
Query: 139 DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHK 198
L G QQRV I + L + ++++ DEPTS L P V E+ K +++L E G+T++ +TH+
Sbjct: 136 QLSGGQQQRVAIARGLAMEPRVMLFDEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHE 195
Query: 199 LKEVKEITDRVTVLRRGEVV 218
+ +E+ DRV + +G+++
Sbjct: 196 MGFAREVADRVIFVDKGQIL 215
Score = 73.7 bits (178), Expect = 4e-12
Identities = 54/222 (24%), Positives = 109/222 (48%), Gaps = 8/222 (3%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K + L + GV+ E+++GE++ + G G+G+ L + + E G+I + G +V
Sbjct: 9 KHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLIRTVNQLESIESGEIWVDGVNVADP 68
Query: 324 PAH-ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVE 382
+ + + +V S L + V+EN+ L + KG+ + ++A + E++E
Sbjct: 69 KTDLNKIREEVGFVFQS--FNLYPHLTVLENITLAPMKV---KGQNA-EQAEKKAMELLE 122
Query: 383 KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
+ + P LSGG QQ+V + R + EP+V++ EPT LD + K +
Sbjct: 123 RVGLAHKKDAFP-SQLSGGQQQRVAIARGLAMEPRVMLFDEPTSALDPEMVGEVLKVMKD 181
Query: 443 LRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEF 484
L + ++ ++ ++ +++DRV + +G+I+ E F
Sbjct: 182 LAESGMTMMCVTHEMGFAREVADRVIFVDKGQILEDETPEAF 223
>pir||G81168 amino acid ABC transporter, ATP-binding protein NMB0696 [imported]
- Neisseria meningitidis (group B strain MD58)
>gi|7225924|gb|AAF41113.1| (AE002424) amino acid ABC
transporter, ATP-binding protein [Neisseria meningitidis
MC58]
Length = 242
Score = 123 bits (306), Expect = 4e-27
Identities = 71/200 (35%), Positives = 114/200 (56%), Gaps = 2/200 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSF-NGPWDAIR 78
+ GVNL++++GE+ + G +G+GKSTL+R + GEI V G V+ + IR
Sbjct: 17 INGVNLEIKKGEVVVVCGPSGSGKSTLIRTVNQLESIESGEIWVDGVNVADPKTDLNKIR 76
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVE 138
E + V+Q F L P TVLEN+ LA + + G EK A E + VG +
Sbjct: 77 EEVGFVFQGFNLYPHLTVLENITLAPMKVK-GQNAEQAEKKAMELLERVGLAHKKDAFPS 135
Query: 139 DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHK 198
L G QQRV I + L + ++++ DEPTS L P V E+ K +++L E G+T++ +TH+
Sbjct: 136 QLSGGQQQRVAIARGLAMEPRVMLFDEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHE 195
Query: 199 LKEVKEITDRVTVLRRGEVV 218
+ +E+ DRV + +G+++
Sbjct: 196 MGFAREVADRVIFVDKGQIL 215
Score = 72.6 bits (175), Expect = 9e-12
Identities = 53/222 (23%), Positives = 109/222 (48%), Gaps = 8/222 (3%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K + L + GV+ E+++GE++ + G G+G+ L + + E G+I + G +V
Sbjct: 9 KHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLIRTVNQLESIESGEIWVDGVNVADP 68
Query: 324 PAH-ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVE 382
+ + + +V + L + V+EN+ L + KG+ + ++A + E++E
Sbjct: 69 KTDLNKIREEVGFV--FQGFNLYPHLTVLENITLAPMKV---KGQNA-EQAEKKAMELLE 122
Query: 383 KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
+ + P LSGG QQ+V + R + EP+V++ EPT LD + K +
Sbjct: 123 RVGLAHKKDAFP-SQLSGGQQQRVAIARGLAMEPRVMLFDEPTSALDPEMVGEVLKVMKD 181
Query: 443 LRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEF 484
L + ++ ++ ++ +++DRV + +G+I+ E F
Sbjct: 182 LAESGMTMMCVTHEMGFAREVADRVIFVDKGQILEDETPEAF 223
>gi|11498736 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445762|pir||G69391 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649451|gb|AAB90107.1| (AE001025) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 294
Score = 123 bits (306), Expect = 4e-27
Identities = 75/228 (32%), Positives = 127/228 (54%), Gaps = 11/228 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M +E+ + KV+ +G AL G++L VE GEI G LG NGAGK+T + G IKPT G
Sbjct: 1 MAQIEVENLTKVF-NGFRALDGISLVVERGEIFGFLGPNGAGKTTTINCCLGLIKPTSGS 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-YLAMLSINPGIKISDVEKL 119
+++ G +V P + ++E + +++ P T +NL Y + NP + ++ L
Sbjct: 60 VRIAGMDVE-EKPVE-VKEICGYLPENYGFYPNLTARQNLLYFSEFYANPKDNVDELLAL 117
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
VG + ++ V + G++QR+ + +AL+ + +++ LDEPT+ L P + +
Sbjct: 118 -------VGLQDSADKKVGEFSRGMKQRLALAQALINDPEVVFLDEPTNGLDPQGIADFR 170
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVS 227
K +R L ++G T F +H L EV+E+ V ++ RG +V K SE+S
Sbjct: 171 KIIRELNQKGKTFFFSSHILSEVREVCSVVGIINRGRIVKVGKISELS 218
Score = 78.4 bits (190), Expect = 2e-13
Identities = 59/230 (25%), Positives = 104/230 (44%), Gaps = 15/230 (6%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
++VE+L K G A+ G+S + GEI G G G G+ G+ P G + +
Sbjct: 4 IEVENL-TKVFNGFRALDGISLVVERGEIFGFLGPNGAGKTTTINCCLGLIKPTSGSVRI 62
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
G DV + P + G Y+P++ G ++ +N++ + K D +E
Sbjct: 63 AGMDVEEKPVEVKEICG--YLPEN--YGFYPNLTARQNLLYFSEFYANPK-----DNVDE 113
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
+ V L S + S G +Q++ + + +I +P+V+ + EPT GLD
Sbjct: 114 LLALVG-----LQDSADKKVGEFSRGMKQRLALAQALINDPEVVFLDEPTNGLDPQGIAD 168
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFT 485
RK + +L + K S L E+ ++ V +I G+I+ +GK E +
Sbjct: 169 FRKIIRELNQKGKTFFFSSHILSEVREVCSVVGIINRGRIVKVGKISELS 218
>pir||A75184 ATP-binding transport protein PAB0434 - Pyrococcus abyssi (strain
Orsay) >gi|5458062|emb|CAB49552.1| (AJ248284)
ATP-BINDING TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 244
Score = 122 bits (304), Expect = 7e-27
Identities = 85/247 (34%), Positives = 134/247 (53%), Gaps = 9/247 (3%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+TAV +S + K Y V ALRGV+ ++EEGEI GL+G NGAGKST ++IL + PT G
Sbjct: 4 VTAVAVSNLEKDYGK-VKALRGVSFQIEEGEIFGLIGPNGAGKSTTLKILATLLHPTGGR 62
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-YLAMLSINPGIKISDVEKL 119
+VFG +V +R+ I+ + + T LE L ++A L K EK+
Sbjct: 63 AEVFGHDVVKEA--SEVRKLISYLPEEAGAYKRLTGLEYLEFMAKLYAKDSRK---AEKM 117
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
K + G LN+ V G+ +R+ + +ALM+ K+ ILDEPTS L + E+
Sbjct: 118 LKLGIELSGLGERLNDKVSTYSKGMVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIR 177
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+T++ + G+T + +H + EV+ + DRV ++ +G ++ E+ ER A + +
Sbjct: 178 RTIKEFSKEGVTFLISSHNMLEVEYLCDRVALIHKGRILEVGTPRELKERYNAENL--EE 235
Query: 240 VVMEISK 246
V ME K
Sbjct: 236 VFMEAVK 242
Score = 88.9 bits (217), Expect = 1e-16
Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 10/220 (4%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
KD + A++GVSF++ EGEI G+ G G G+ + LA + P G+ E+ G DV K
Sbjct: 14 KDYGKVKALRGVSFQIEEGEIFGLIGPNGAGKSTTLKILATLLHPTGGRAEVFGHDVVKE 73
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
+ R ++Y+P+ G + +E L ++++ K +K ++ E+
Sbjct: 74 ASEVRKL--ISYLPEE--AGAYKRLTGLE--YLEFMAKLYAKDSRKAEKMLKLGIELSGL 127
Query: 384 FEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
E L + S G +++++ R ++ +PK+ ++ EPT GLDI IR+T+ +
Sbjct: 128 GERLNDK----VSTYSKGMVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRRTIKEF 183
Query: 444 RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
E L+ S ++ E+ L DRVA+I++G+I+ +G E
Sbjct: 184 SKEGVTFLISSHNMLEVEYLCDRVALIHKGRILEVGTPRE 223
>gb|AAD11984.1| (AF085687) rhamnose transporter [Rhizobium leguminosarum bv.
trifolii]
Length = 311
Score = 122 bits (304), Expect = 7e-27
Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 3/197 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+EM GI +++P GV AL V++ + G + L+GENGAGKSTL++IL G +P +GEI V
Sbjct: 116 LEMRGISQIFP-GVKALDNVSIALHPGTVTALIGENGAGKSTLVKILTGIYRPNEGEILV 174
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G+ +F AI G+ ++Q L TV EN+++ I ++ K
Sbjct: 175 DGRPTTFASAQAAIDAGVTAIHQETVLFDELTVAENIFIGHAPRTRFRTIDWQTMNSRSK 234
Query: 124 MREVGFEVPLNEIV--EDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E ++ + +DL + + V I +AL + A+I+I+DEPT+ L+ E+ +LF+
Sbjct: 235 ALLTALESNIDPTIRLKDLSIAQRHLVAIARALSIEARIVIMDEPTAALSRKEIDDLFRI 294
Query: 182 LRNLKERGITVIFITHK 198
+R LKE+G ++FI+HK
Sbjct: 295 VRGLKEQGKAILFISHK 311
>emb|CAB60178.1| (AL132824) probable ABC sugar transport ATP binding protein
[Streptomyces coelicolor]
Length = 263
Score = 122 bits (304), Expect = 7e-27
Identities = 81/239 (33%), Positives = 133/239 (54%), Gaps = 9/239 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VE+SG+ K Y + V AL GV+L+V GEI +LG+NGAGKSTL++I+ G + G + +
Sbjct: 11 VELSGVSKNYGN-VRALEGVSLEVHAGEITCVLGDNGAGKSTLIKIIAGLHQHDGGTLSL 69
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLA---MLSINPGIKISDVEKLA 120
G+E + P +A+ GIA VYQ +VP V N +L + P K DV+ +
Sbjct: 70 DGEETRLSSPREALDRGIATVYQDLAVVPLMPVWRNFFLGSEPRKGVAP-FKRMDVDHMR 128
Query: 121 K---EKMREVGFEV-PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
+ ++ +G ++ +++ + L G +Q V I +A+ AK+L+LDEPT+ L +
Sbjct: 129 RTTHAELLRMGIDLRDVDQPIGTLSGGERQCVAIARAVYFGAKVLVLDEPTAALGVKQSG 188
Query: 177 ELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM 235
+ K + +++G+ V+ ITH + DR +L+RG +V EV+ EL + M
Sbjct: 189 VVLKYVAAARDQGLGVVLITHNPHHAYLVGDRFVLLKRGTMVANQTRDEVTLDELTQQM 247
Score = 82.7 bits (201), Expect = 8e-15
Identities = 63/227 (27%), Positives = 107/227 (46%), Gaps = 4/227 (1%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A++GVS E+ GEI + G G G+ L + +AG+ + G + L G++ E
Sbjct: 25 ALEGVSLEVHAGEITCVLGDNGAGKSTLIKIIAGLHQHDGGTLSLDGEETRLSSPREALD 84
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSR--VLHKGRISWDKANEMTNEVVEKFEVLL 388
G+A V + +V M V N L + R V R+ D T+ + + + L
Sbjct: 85 RGIATVYQD--LAVVPLMPVWRNFFLGSEPRKGVAPFKRMDVDHMRRTTHAELLRMGIDL 142
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
PI LSGG +Q V + R + KV+V+ EPT L + + + K + RD+
Sbjct: 143 RDVDQPIGTLSGGERQCVAIARAVYFGAKVLVLDEPTAALGVKQSGVVLKYVAAARDQGL 202
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
G++LI+ + + DR ++ G +++ +E TL++L M G
Sbjct: 203 GVVLITHNPHHAYLVGDRFVLLKRGTMVANQTRDEVTLDELTQQMAG 249
>pir||G69043 cobalt transport ATP-binding protein O - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621173|gb|AAB84639.1| (AE000802) cobalt transport
ATP-binding protein O [Methanobacterium
thermoautotrophicum]
Length = 280
Score = 122 bits (302), Expect = 1e-26
Identities = 74/227 (32%), Positives = 121/227 (52%), Gaps = 2/227 (0%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M +E I YPDG ALRG+N E GE+ LLG NGAGKSTL G ++PT G+
Sbjct: 3 MRIIEAVDIRYTYPDGTEALRGINFHAERGEVVALLGPNGAGKSTLFLHFNGILQPTSGK 62
Query: 61 IKVFGKEVSFN-GPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
I + G+E+ ++ R+ + +V+Q+ F + +A +N G+ +VE+
Sbjct: 63 IMIDGEELDYSKSGLIKARQKVGIVFQN-PDDQLFAPRVDEDVAFGPLNMGLSEDEVEER 121
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
++ +++VG ++ G ++RV I + + I++LDEPTS L P ++
Sbjct: 122 VRDALQKVGMLGYESKPPHHFSGGEKKRVAIAGIIAMKPDIMVLDEPTSGLDPRGASQIL 181
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
+ L NL E G+T+I TH + +DR+ ++ GE++ T SEV
Sbjct: 182 RLLHNLNEEGMTIIISTHDVDLAPLYSDRIYIISDGEIISTGAPSEV 228
Score = 90.5 bits (221), Expect = 4e-17
Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
I++ D+ G +A++G++F GE++ + G G G+ L GI P GKI
Sbjct: 5 IIEAVDIRYTYPDGTEALRGINFHAERGEVVALLGPNGAGKSTLFLHFNGILQPTSGKIM 64
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDM--------NVVENVVLTNLSRVLHKG 366
+ G+++ + KSGL + ++VG+V V E+V L+ L
Sbjct: 65 IDGEEL------DYSKSGL--IKARQKVGIVFQNPDDQLFAPRVDEDVAFGPLNMGL--- 113
Query: 367 RISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQ 426
S D+ E + ++K +L +K P H SGG +++V + I +P ++V+ EPT
Sbjct: 114 --SEDEVEERVRDALQKVGMLGYESKPP-HHFSGGEKKRVAIAGIIAMKPDIMVLDEPTS 170
Query: 427 GLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
GLD I + L L +E I++ + D+D SDR+ +I +G+I+S G E
Sbjct: 171 GLDPRGASQILRLLHNLNEEGMTIIISTHDVDLAPLYSDRIYIISDGEIISTGAPSE 227
>pir||E70337 ABC transporter - Aquifex aeolicus >gi|2983089|gb|AAC06695.1|
(AE000689) ABC transporter [Aquifex aeolicus]
Length = 238
Score = 122 bits (302), Expect = 1e-26
Identities = 76/214 (35%), Positives = 120/214 (55%), Gaps = 2/214 (0%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L+G +L V +GEI GLLG NGAGK+TL + G I KG++ + G++V+ P+ ++
Sbjct: 17 LKGGSLSVNKGEIVGLLGPNGAGKTTLFNSIIGFISVDKGKVLLDGEDVTHLPPFKRAQK 76
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
G+A + Q TL TVLENL L L K + K A+ + + G ++
Sbjct: 77 GLAFLPQEHTLFEDLTVLENL-LIFLEFFTDSKEEAITK-AEALLEDFGLLELKDQKAYA 134
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKL 199
L G ++R+EI ++L+ K ++LDEP + L PI V E+ + ++NLK GI V+ H +
Sbjct: 135 LSGGQKRRLEIARSLITTPKYVLLDEPFAGLDPIIVSEIREIVKNLKNNGIGVLITDHNV 194
Query: 200 KEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
+E ++ DRV ++ G+V+ K EV E R
Sbjct: 195 RETIKMVDRVYIISEGKVLAHGKPEEVVNNEAVR 228
Score = 111 bits (274), Expect = 2e-23
Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
+KG S + +GEI+G+ G G G+ L ++ G +KGK+ L G+DVT LP +R +
Sbjct: 17 LKGGSLSVNKGEIVGLLGPNGAGKTTLFNSIIGFISVDKGKVLLDGEDVTHLPPFKRAQK 76
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL-LSS 390
GLA++P L D+ V+EN+++ L S ++A ++E F +L L
Sbjct: 77 GLAFLPQEHT--LFEDLTVLENLLI-----FLEFFTDSKEEAITKAEALLEDFGLLELKD 129
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
KA LSGG ++++ + R +I PK +++ EP GLD IR+ + L++ G+
Sbjct: 130 QKAYA--LSGGQKRRLEIARSLITTPKYVLLDEPFAGLDPIIVSEIREIVKNLKNNGIGV 187
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L+ ++ E +++ DRV +I EGK+++ GK EE
Sbjct: 188 LITDHNVRETIKMVDRVYIISEGKVLAHGKPEE 220
>pir||C71197 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3258287|dbj|BAA30970.1| (AP000007) 318aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 318
Score = 122 bits (302), Expect = 1e-26
Identities = 89/278 (32%), Positives = 154/278 (55%), Gaps = 32/278 (11%)
Query: 1 MTAVEMSGIVKVYPDGVV----------ALRGVNLKVEEGEIHGLLGENGAGKSTLMRIL 50
M +E+ + K+YP + AL+G+ +V++GE+ GLLG NGAGK+T ++IL
Sbjct: 1 MNVIEVRNLRKLYPKKIPLPFRKVEWFEALKGITFRVKKGELFGLLGPNGAGKTTTIKIL 60
Query: 51 YGEIKPTKGEIKVFGKEVSFNGPWDAIREGIAMVYQ-HFTLVPTFTVLENL-YLAMLSIN 108
++P+ GE KV G +V + IR+ I +V + TL T ENL Y A +
Sbjct: 61 TTLLEPSSGEAKVLGLDVVKDA--REIRKRINLVAEGERTLYWRLTAYENLRYFASIYYI 118
Query: 109 PGIKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPT- 167
P + EK +E ++ VG N++V + G++QR+ I KAL+ + ++L LDEPT
Sbjct: 119 PR---REAEKRIEELLKMVGLWDRRNDLVMNYSRGMKQRLAIAKALINDPEVLFLDEPTL 175
Query: 168 --SVLTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSE 225
V + + V+EL + L + E G TV+ TH + E +E+ DR+ ++ G+++
Sbjct: 176 GLDVQSAVFVRELVRRL--VDEEGKTVLLTTHYMNEAEELCDRIAIIDHGKIIA------ 227
Query: 226 VSERELARMMVQRDVVMEISKGKSTPGNT---ILKVED 260
++ E + MV+ D ++E+ + ++ PG ++KV+D
Sbjct: 228 LNTPEGLKRMVRNDTIVEV-RVRNYPGVNPFGLVKVDD 264
Score = 89.7 bits (219), Expect = 7e-17
Identities = 58/216 (26%), Positives = 110/216 (50%), Gaps = 14/216 (6%)
Query: 270 DAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERY 329
+A+KG++F +++GE+ G+ G G G+ + L + P G+ ++LG DV K R
Sbjct: 28 EALKGITFRVKKGELFGLLGPNGAGKTTTIKILTTLLEPSSGEAKVLGLDVVKDAREIR- 86
Query: 330 KSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEV--L 387
+R+ LV + LT + + I + E + E ++ L
Sbjct: 87 ----------KRINLVAEGERTLYWRLTAYENLRYFASIYYIPRREAEKRIEELLKMVGL 136
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+ + S G +Q++ + + +I +P+V+ + EPT GLD+ + F+R+ + +L DE
Sbjct: 137 WDRRNDLVMNYSRGMKQRLAIAKALINDPEVLFLDEPTLGLDVQSAVFVRELVRRLVDEE 196
Query: 448 -KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
K +LL + ++E +L DR+A+I GKI+++ E
Sbjct: 197 GKTVLLTTHYMNEAEELCDRIAIIDHGKIIALNTPE 232
>dbj|BAB05182.1| (AP001512) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 240
Score = 122 bits (302), Expect = 1e-26
Identities = 68/199 (34%), Positives = 118/199 (59%), Gaps = 6/199 (3%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSF-NGPWDAIR 78
L+G+ ++++G++ ++G +G+GKST +R L PT G + + +E++ +R
Sbjct: 17 LKGITTEIQKGDVVAVIGPSGSGKSTFLRCLNLLEVPTSGHVWIDDEEITHPKTNVGKLR 76
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK--MREVGFEVPLNEI 136
I MV+QHF L P TV+ENL A + + +S E +AK + +++VG +E
Sbjct: 77 TKIGMVFQHFHLFPHMTVMENLTFAPMKVKG---VSKAEAIAKGESLLQKVGLLEKRDEY 133
Query: 137 VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFIT 196
L G +QRV I +AL ++ ++++ DEPTS L P VKE+ +++L E G+T++ +T
Sbjct: 134 PSRLSGGQKQRVAIARALAMDPEVMLFDEPTSALDPEMVKEVLAVMKDLAETGMTMVIVT 193
Query: 197 HKLKEVKEITDRVTVLRRG 215
H++ KE+ DRV L +G
Sbjct: 194 HEMGFAKEVADRVLFLDQG 212
>emb|CAB88958.1| (AL353864) probable ABC transport protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 330
Score = 122 bits (302), Expect = 1e-26
Identities = 82/238 (34%), Positives = 129/238 (53%), Gaps = 7/238 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VE+ K Y + + AL GV+L V G + +LG+NGAGKSTL++I+ G + T+GE V
Sbjct: 28 VELRRAGKSYGN-IRALHGVDLAVHPGRVTCVLGDNGAGKSTLIKIISGLHQHTEGEFLV 86
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYL-AMLSINP----GIKISDVEK 118
G V F P DA+ GIA VYQ +P V N +L + ++ P + I +++
Sbjct: 87 DGDAVRFGTPRDALARGIATVYQDLATIPLMPVWRNFFLGSEMTKGPWPVRRLDIDRMKR 146
Query: 119 LAKEKMREVGFEV-PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
A E++R +G + L + + L G +Q V I +A+ A++LILDEPT+ L +
Sbjct: 147 TADEELRNMGIVLDDLEQPIGTLSGGQRQCVAIARAVYFGARVLILDEPTAALGVKQSGV 206
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM 235
+ K + +ERG+ VIFITH + D +VLR G + + ++++ L M
Sbjct: 207 VLKYIAAARERGLGVIFITHNPHHAYMVGDHFSVLRLGTLELSAARADITLEALTNHM 264
>pir||G82993 probable ATP-binding/permease fusion ABC transporter PA5231
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9951539|gb|AAG08616.1|AE004935_13 (AE004935)
probable ATP-binding/permease fusion ABC transporter
[Pseudomonas aeruginosa]
Length = 916
Score = 121 bits (301), Expect = 2e-26
Identities = 121/506 (23%), Positives = 230/506 (44%), Gaps = 49/506 (9%)
Query: 16 GVVALRGVNLKVEE-------------GEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
GV +LRGV+L+ E + GL+G +G GKS+L+ +L G K GEI+
Sbjct: 7 GVASLRGVSLRYGETRAVDDVSLEIPANRMVGLIGPDGVGKSSLLALLAGARKMQDGEIR 66
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHF--TLVPTFTVLENL-YLAMLSINPGIKISDVEKL 119
V ++ A+ IA + Q L PT +V EN+ + L G ++ E+
Sbjct: 67 VLDGDMRDRRHRRAVCPRIAYMPQGLGKNLYPTLSVFENVDFFGRLF---GHDKAERERR 123
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+ ++ G L G++Q++ + AL+ + +LILDEPT+ + P+ + +
Sbjct: 124 IADLLQSTGLAPFAERPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRNQFW 183
Query: 180 KTLRNLK--ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER-------- 229
+ + ++ G++V+ T ++E + D + + G+V+ T E+ ER
Sbjct: 184 ELIGRIRAGREGMSVLVATAYMEEAERF-DWLVAMDDGKVLATGTPQELRERTGTQSLES 242
Query: 230 -------ELARMMVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREG 282
E R R V+ + + P ++ E L + AV VSF + G
Sbjct: 243 AFIALLPESKRAGHHRLVIPPRPQSEGAP-RIAIEAEGLTCRFG-DFVAVDHVSFRIERG 300
Query: 283 EILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRV 342
EI G G G G+ + L G+ +G L G+ V R + G S+
Sbjct: 301 EIFGFLGSNGCGKSTTMKMLTGLLPASEGTCALFGQPVDASDMATRRRVGYM----SQAF 356
Query: 343 GLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGN 402
L +++V +N+VL +R+ H + D E++ +F++ + + P L G
Sbjct: 357 SLYAELSVRQNLVLH--ARLFH---LPADGIPARVGEMLRRFDLEKVADELP-NDLPLGI 410
Query: 403 QQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQ 462
+Q++ + +I +P+++++ EPT G+D A + + +++L + IST Q
Sbjct: 411 RQRLSLAVAVIHKPEILILDEPTSGVDPVARDGFWELMVELSRRDGVTIFISTHFMNEAQ 470
Query: 463 LSDRVAVIYEGKIMSIGKTEEFTLEK 488
DR+++++ GK+++ +E ++
Sbjct: 471 RCDRISLMHAGKVLASDTPDELVRQR 496
Score = 110 bits (273), Expect = 3e-23
Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 8/251 (3%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E G+ + D VA+ V+ ++E GEI G LG NG GKST M++L G + ++G
Sbjct: 274 AIEAEGLTCRFGD-FVAVDHVSFRIERGEIFGFLGSNGCGKSTTMKMLTGLLPASEGTCA 332
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
+FG+ V + A R + + Q F+L +V +NL L + + + E
Sbjct: 333 LFGQPVDASDM--ATRRRVGYMSQAFSLYAELSVRQNLVLHARLFH--LPADGIPARVGE 388
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+R E +E+ DLP+GI+QR+ + A++ +ILILDEPTS + P+ ++ +
Sbjct: 389 MLRRFDLEKVADELPNDLPLGIRQRLSLAVAVIHKPEILILDEPTSGVDPVARDGFWELM 448
Query: 183 RNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSE-VSERELARMMVQRDV 240
L R G+T+ TH + E + DR++++ G+V+ + E V +R L +
Sbjct: 449 VELSRRDGVTIFISTHFMNEAQR-CDRISLMHAGKVLASDTPDELVRQRGLPTLEATFIA 507
Query: 241 VMEISKGKSTP 251
+E + G + P
Sbjct: 508 YLEEAAGAAAP 518
>dbj|BAA05389.1| (D26358) CmpD [Synechococcus sp.]
Length = 278
Score = 121 bits (301), Expect = 2e-26
Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 12/224 (5%)
Query: 6 MSGIVKVY--PDG-VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
+ + K+Y P G L GVNL V+EGE ++G +G GKSTL+ ++ G +P+ G ++
Sbjct: 23 VENVSKIYETPKGPYTVLDGVNLTVQEGEFICVIGHSGCGKSTLLNMVSGFNQPSHGSVR 82
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
+ GKE+ GP + V+Q++ L+P T EN+YLA+ +NP ++ + ++ +E
Sbjct: 83 LKGKEIDRPGPDRMV------VFQNYALLPWMTAYENVYLAVDCVNPQMREGEKREIVRE 136
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ VG + + + G++QRV I +AL + ++LILDEP L I +EL + L
Sbjct: 137 HLAMVGLTEAAEKKITQISGGMKQRVAIARALSIRPEVLILDEPFGALDAITKEELQEEL 196
Query: 183 RNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEV--VGTVKT 223
+ + TV+ ITH + E + DR+ ++ G +G + T
Sbjct: 197 LKIWNDHRCTVLMITHDIDEALFLADRLVMMTNGPAANIGEIMT 240
Score = 80.0 bits (194), Expect = 6e-14
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 23/213 (10%)
Query: 274 GVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGL 333
GV+ ++EGE + + G G G+ L ++G P G + L GK++ + P +R
Sbjct: 42 GVNLTVQEGEFICVIGHSGCGKSTLLNMVSGFNQPSHGSVRLKGKEIDR-PGPDRMVVFQ 100
Query: 334 AYVPDSRRVGLVLDMNVVENVVLTN--LSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
Y L+ M ENV L ++ + +G E+V + ++ T
Sbjct: 101 NYA-------LLPWMTAYENVYLAVDCVNPQMREGE---------KREIVREHLAMVGLT 144
Query: 392 KAP---IKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL-RDER 447
+A I +SGG +Q+V + R + P+V+++ EP LD E +++ LLK+ D R
Sbjct: 145 EAAEKKITQISGGMKQRVAIARALSIRPEVLILDEPFGALDAITKEELQEELLKIWNDHR 204
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+L+I+ D+DE L L+DR+ ++ G +IG+
Sbjct: 205 CTVLMITHDIDEALFLADRLVMMTNGPAANIGE 237
>pir||A70194 ABC transporter, ATP-binding protein homolog - Lyme disease
spirochete >gi|2688689|gb|AAC67099.1| (AE001175) ABC
transporter, ATP-binding protein [Borrelia burgdorferi]
Length = 309
Score = 121 bits (301), Expect = 2e-26
Identities = 83/242 (34%), Positives = 133/242 (54%), Gaps = 24/242 (9%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ + + K+Y AL V+ KVEEGE+ G+LG NGAGKSTL++IL P+KG +K+
Sbjct: 2 INVEKVTKMYGP-FTALFNVSFKVEEGEVLGILGPNGAGKSTLIKILTSFHYPSKGNVKI 60
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE- 122
FGK++ + I + I V + L P +V E YL +S +I V+KL KE
Sbjct: 61 FGKDIVEHS--KEILQQIGYVPEKLALYPELSVKE--YLKFIS-----EIKGVKKLKKEI 111
Query: 123 -------KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K++EV ++++ L G +QRV I AL+ N K++ILDEPT+ L P ++
Sbjct: 112 DRVISIFKLKEVE-----DKLISQLSKGFRQRVGIAGALINNPKLVILDEPTNGLDPNQI 166
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM 235
E + LR L + T++F +H L EV+ I R+ ++ G +V + + +L +
Sbjct: 167 IEFKEFLRELAKES-TILFSSHILSEVESICKRIIIVNNGVIVADDTKENIIKNKLKEIE 225
Query: 236 VQ 237
++
Sbjct: 226 IE 227
Score = 81.9 bits (199), Expect = 1e-14
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 13/219 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ VSF++ EGE+LGI G G G+ L + L P KG +++ GKD+ + +
Sbjct: 16 ALFNVSFKVEEGEVLGILGPNGAGKSTLIKILTSFHYPSKGNVKIFGKDIVE--HSKEIL 73
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+ YVP+ ++ L +++V E L +S + KG K + + V+ F++
Sbjct: 74 QQIGYVPE--KLALYPELSVKE--YLKFISEI--KG---VKKLKKEIDRVISIFKLKEVE 124
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
K I LS G +Q+V + +I PK++++ EPT GLD ++ L +L E I
Sbjct: 125 DKL-ISQLSKGFRQRVGIAGALINNPKLVILDEPTNGLDPNQIIEFKEFLRELAKE-STI 182
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
L S L E+ + R+ ++ G I++ E KL
Sbjct: 183 LFSSHILSEVESICKRIIIVNNGVIVADDTKENIIKNKL 221
>gb|AAC05643.1| (AF033673) unknown [Pseudomonas marginalis pv. alfalfae]
Length = 254
Score = 121 bits (301), Expect = 2e-26
Identities = 77/216 (35%), Positives = 122/216 (55%), Gaps = 3/216 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
++M G+ K Y V L+ +NL V++GE L G +G+GKST +R L + +G I V
Sbjct: 15 IQMQGVNKWYGQFHV-LKDINLNVKQGERIVLCGPSGSGKSTTIRCLNRLEEHQQGRIVV 73
Query: 64 FGKEVSFN-GPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
G E++ + +AIR + MV+QHF L P T+L+N LA + + K E++A
Sbjct: 74 DGVELTNDLKQIEAIRREVGMVFQHFNLFPHLTILQNCTLAPMWVRKMPK-RKAEEIAMH 132
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ V ++ L G QQRV I +AL + KI++ DEPTS L P VKE+ T+
Sbjct: 133 YLERVRIPEQAHKFPGQLSGGQQQRVAIARALCMKPKIMLFDEPTSALDPEMVKEVLDTM 192
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
L E G+T++ +TH++ + + +RV + +GE+V
Sbjct: 193 IGLAEDGMTMLCVTHEMGFARTVANRVIFMDKGEIV 228
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 121 bits (301), Expect = 2e-26
Identities = 123/497 (24%), Positives = 227/497 (44%), Gaps = 56/497 (11%)
Query: 23 VNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKP----TKGEIKVFGKEV---------S 69
V+ ++ GE+ GL+GE G+GKS L R + I+ + G++ GK+V S
Sbjct: 28 VDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQAPLDISSGQVIFEGKDVLSLDARGLRS 87
Query: 70 FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGF 129
G R G +L P + + + S+ P I ++ ++ + + V
Sbjct: 88 IRGN----RIGFIGANPMGSLDPRLPIGHQIVEKLRSVRPDIGKAEAKEKVLDLLGRVHI 143
Query: 130 EVPLNEIVE---DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK 186
P + E G+ QRV I+ AL+ ++I D T L ++ + + NL+
Sbjct: 144 PSPRSRFHEAPFQFSGGMMQRVMIVDALVSEPSLVIADNITQPLDVTVAAQIIRLIDNLR 203
Query: 187 ERGITV-IFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVS---ERELARMMVQR--DV 240
E T +FI+ L V +I +R V++ G +V +T++++ ++ R ++ R +
Sbjct: 204 ESLDTAFLFISSSLPVVSKIAERTLVMQGGRIVEQGETADIAANPQQAYTRALLSRIPSI 263
Query: 241 VMEISKGKSTPGNTILKVEDLW----------VKDDRGLDAVKGVSFELREGEILGIAGV 290
+S ++ G +L VE+ + AV+ VSF ++ GE GI G
Sbjct: 264 WKNVSAPEAKDGEAVLTVENATRTYSVRRRDAFNAFNEVKAVRDVSFTVKAGENFGIVGE 323
Query: 291 QGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH---ERYKSGLAYVPD---SRRVGL 344
G G+ L LA + P G+I LGK+++ L A E KS + D S G+
Sbjct: 324 SGCGKSTLTRLLAWLEQPNAGRIAFLGKNLSNLSARSLTEMRKSFQLLLQDPYGSLPAGM 383
Query: 345 VLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQ 404
+ + E +++ ++R R + +A E EV ++ + + P+ LS G +Q
Sbjct: 384 SIIRMIEEPLLIHGVAR-----RDAEQRAQEAMREVGLHADL---AERLPV-GLSAGQRQ 434
Query: 405 KVMVGREIIREPKVIVVSEPTQGLD-IGATEFIRKTLLKLRDERKGI--LLISTDLDEIL 461
++ + R ++ +P+++++ E LD + E + L K G + IS DL +
Sbjct: 435 RINIARALVLKPRLLILDETLSALDQVEQAELL--DLFKRLQAAHGFSYIFISHDLALVR 492
Query: 462 QLSDRVAVIYEGKIMSI 478
++ RVAV+Y G+I+ +
Sbjct: 493 RICHRVAVMYLGRIVEL 509
Score = 102 bits (251), Expect = 1e-20
Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVS--FNGPW 74
V A+R V+ V+ GE G++GE+G GKSTL R+L +P G I GK +S
Sbjct: 302 VKAVRDVSFTVKAGENFGIVGESGCGKSTLTRLLAWLEQPNAGRIAFLGKNLSNLSARSL 361
Query: 75 DAIREGIAMVYQH-FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPL 133
+R+ ++ Q + +P + + L I+ G+ D E+ A+E MREVG
Sbjct: 362 TEMRKSFQLLLQDPYGSLPAGMSIIRMIEEPLLIH-GVARRDAEQRAQEAMREVGLHA-- 418
Query: 134 NEIVEDLPVGI----QQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK-ER 188
++ E LPVG+ +QR+ I +AL+L ++LILDE S L +E EL + L+
Sbjct: 419 -DLAERLPVGLSAGQRQRINIARALVLKPRLLILDETLSALDQVEQAELLDLFKRLQAAH 477
Query: 189 GITVIFITHKLKEVKEITDRVTVLRRGEVV 218
G + IFI+H L V+ I RV V+ G +V
Sbjct: 478 GFSYIFISHDLALVRRICHRVAVMYLGRIV 507
>pir||A69095 cobalt transport ATP-binding protein O - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622836|gb|AAB86176.1| (AE000928) cobalt transport
ATP-binding protein O [Methanobacterium
thermoautotrophicum]
Length = 311
Score = 121 bits (300), Expect = 2e-26
Identities = 79/233 (33%), Positives = 127/233 (53%), Gaps = 5/233 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+ + YPDG ALRG+N+KVE GE ++G NGAGKSTL L G +KP GE+ +
Sbjct: 2 IELRDLSYSYPDGTPALRGINMKVERGERVAVIGPNGAGKSTLFLHLNGILKPAAGEVII 61
Query: 64 FGKEVSFN-GPWDAIREGIAMVYQH-FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
G+ V ++ IR+ + +V+Q+ + + TV E+ +A +N G+ +VE+
Sbjct: 62 DGERVDYSKDELIKIRQKVGIVFQNPDDQLFSPTVRED--VAFGPMNLGLPEDEVEERVA 119
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + +VG N L G ++RV I L + +I++LDEPT+ L P + +
Sbjct: 120 ESLEKVGMSGYENRAPHHLSGGEKKRVAIAGILAMKPEIMVLDEPTTGLDPETADGIIRI 179
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV-SERELAR 233
L L GITV+ +H ++ + + +RV VL GE++ E+ + EL R
Sbjct: 180 LLELSREGITVMISSHDVEIISQFAERVFVLNSGELIAEGTPLEIFRDAELIR 232
Score = 79.6 bits (193), Expect = 7e-14
Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
++++ DL G A++G++ ++ GE + + G G G+ L L GI P G++
Sbjct: 1 MIELRDLSYSYPDGTPALRGINMKVERGERVAVIGPNGAGKSTLFLHLNGILKPAAGEVI 60
Query: 315 LLGK--DVTKLPAHE-RYKSGLAYV-PDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISW 370
+ G+ D +K + R K G+ + PD + + V E+V ++ L +
Sbjct: 61 IDGERVDYSKDELIKIRQKVGIVFQNPDDQ----LFSPTVREDVAFGPMNLGLPE----- 111
Query: 371 DKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDI 430
D+ E E +EK + +AP HLSGG +++V + + +P+++V+ EPT GLD
Sbjct: 112 DEVEERVAESLEKVGMSGYENRAP-HHLSGGEKKRVAIAGILAMKPEIMVLDEPTTGLDP 170
Query: 431 GATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
+ I + LL+L E +++ S D++ I Q ++RV V+ G++++ G
Sbjct: 171 ETADGIIRILLELSREGITVMISSHDVEIISQFAERVFVLNSGELIAEG 219
>pir||F71849 amino acid ABC transporter, ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4155696|gb|AAD06680.1|
(AE001537) AMINO ACID ABC TRANSPORTER, ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 121 bits (300), Expect = 2e-26
Identities = 70/217 (32%), Positives = 124/217 (56%), Gaps = 7/217 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E G+ K Y + +V L G+N + +GE+ +LG +G GKST ++ L G K +GEI
Sbjct: 5 LETKGLKKTYQNHLV-LDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKIDEGEILF 63
Query: 64 FGKEVSFNGP---WDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+ + N P W+ +R+ I MV+Q++ L P VL+N+ LA L + K +V A
Sbjct: 64 --ENTNLNTPSTNWNQMRQKIGMVFQNYELFPHLNVLDNILLAPLKVQKRSK-DEVLSQA 120
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
E ++ VG E ++L G +QRV I+++L + KI++ DE T+ L P VKE+ +
Sbjct: 121 VELLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEMVKEVLE 180
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
+ L + G++++ +TH++K ++I ++ G++
Sbjct: 181 VILELAKTGMSMVIVTHEMKFAQKIASKIVFFDSGKI 217
>pir||F83488 probable ATP-binding component of ABC transporter PA1256 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947188|gb|AAG04645.1|AE004555_5 (AE004555) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 240
Score = 121 bits (300), Expect = 2e-26
Identities = 72/215 (33%), Positives = 125/215 (57%), Gaps = 3/215 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E++ + K Y V ++GV+L+V++GE+ ++G +G+GKSTL+ + G +G I+V
Sbjct: 2 IEINDVHKAYGQFEV-VKGVDLRVDKGEVLSIIGGSGSGKSTLLMCINGLEPIQRGSIRV 60
Query: 64 FGKEVSFNGP-WDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
G +V G + +R I +V+Q + P TVLEN+ LA + G ++ E +A +
Sbjct: 61 DGIDVHARGTDLNRLRRKIGIVFQQWNAFPHLTVLENVMLAPRKVL-GKSRAEAEAMALK 119
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
++ VG L + L G QQR+ I +AL ++ ++ DE TS L P V E+ T+
Sbjct: 120 QLTHVGLGDKLKVFPQRLSGGQQQRMAIARALAMSPDYMLFDEATSALDPQLVGEVLDTM 179
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
R L E G+T++ +TH+++ ++++DRV R G V
Sbjct: 180 RLLAEEGMTMVLVTHEIRFARDVSDRVAFFRNGLV 214
Score = 69.5 bits (167), Expect = 8e-11
Identities = 61/221 (27%), Positives = 102/221 (45%), Gaps = 20/221 (9%)
Query: 270 DAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERY 329
+ VKGV + +GE+L I G G+G+ L + G+ ++G I + G DV H R
Sbjct: 15 EVVKGVDLRVDKGEVLSIIGGSGSGKSTLLMCINGLEPIQRGSIRVDGIDV-----HAR- 68
Query: 330 KSGLAYVPDSRRVGLVLD-------MNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVE 382
G R++G+V + V+ENV+L +VL K R +A M + +
Sbjct: 69 --GTDLNRLRRKIGIVFQQWNAFPHLTVLENVMLAP-RKVLGKSRA---EAEAMALKQLT 122
Query: 383 KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
L K + LSGG QQ++ + R + P ++ E T LD + T+
Sbjct: 123 HVG-LGDKLKVFPQRLSGGQQQRMAIARALAMSPDYMLFDEATSALDPQLVGEVLDTMRL 181
Query: 443 LRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L +E ++L++ ++ +SDRVA G + IG ++
Sbjct: 182 LAEEGMTMVLVTHEIRFARDVSDRVAFFRNGLVHEIGPPDQ 222
>sp|P27675|GLNQ_BACST GLUTAMINE TRANSPORT ATP-BINDING PROTEIN GLNQ >gi|98203|pir||A42478
glutamine transport protein glnQ - Bacillus
stearothermophilus >gi|142988|gb|AAA22483.1| (M61017)
membrane transport protein [Bacillus stearothermophilus]
Length = 242
Score = 120 bits (299), Expect = 3e-26
Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 14/236 (5%)
Query: 11 KVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE-----IKVFG 65
K Y D V L+ +NL + +GE+ ++G +G+GKSTL+R + + GE +KV
Sbjct: 9 KYYGDFHV-LKDINLTIHQGEVVVIIGPSGSGKSTLVRCINRLETISSGELIVDNVKVND 67
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMR 125
K + N +R I MV+QHF L P TVL+N+ LA + + I + ++ A +
Sbjct: 68 KHIDIN----QLRRNIGMVFQHFNLYPHMTVLQNITLAPMKVLR-IPEKEAKETAMYYLE 122
Query: 126 EVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNL 185
+VG N +L G QQRV I + L + KI++ DEPTS L P + E+ ++ L
Sbjct: 123 KVGIPDKANAYPSELSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPETIGEVLDVMKQL 182
Query: 186 KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMVQR 238
+ G+T++ +TH++ +E+ DR+ + +G ++ E + E A++ + R
Sbjct: 183 AKEGMTMVVVTHEMGFAREVADRIVFMDQGRILEEAPPEEFFSNPKEERAKVFLSR 238
>sp|Q58903|YF08_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ1508
>gi|2127732|pir||C64488 ABC transporter probable
ATP-binding subunit homolog - Methanococcus jannaschii
>gi|1592142|gb|AAB99520.1| (U67591) ABC transporter,
probable ATP-binding subunit [Methanococcus jannaschii]
Length = 224
Score = 120 bits (299), Expect = 3e-26
Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 9/221 (4%)
Query: 4 VEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+E + K+Y G +AL+ +NLK+EEGE ++G +G GKSTL+ IL PTKGE
Sbjct: 2 IEAKNVWKIYGKGEAKTIALKNINLKIEEGEFVMIMGPSGCGKSTLLNILALLDTPTKGE 61
Query: 61 IKVFGKEVSFNGPWDAI---REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE 117
+ G+ S + R+ ++Q F L+ T T LEN+ L M+ ++ K S
Sbjct: 62 VYYKGRRTSSMSENERAIFRRKISGFIFQQFHLIKTLTALENVELPMM-LDERDK-SYRR 119
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
K AK+ + VG LN L G QQRV I +AL N KI+ DEPT L
Sbjct: 120 KRAKKLLEMVGLGDRLNHYPHQLSGGQQQRVAIARALANNPKIIFADEPTGNLDSKSGMA 179
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ L+ L E+GIT+I +TH+ +E+ + ++ LR GE+V
Sbjct: 180 VMSILKGLNEKGITIIMVTHE-QELTKYASKIIKLRDGEIV 219
>emb|CAB59828.1| (AJ012388) hypothetical protein [Lactococcus lactis]
Length = 368
Score = 120 bits (299), Expect = 3e-26
Identities = 80/219 (36%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI-----KVFGKE--VS 69
V A++ L +E+G+I+G++G +GAGKSTL+R + KPT+G+I K+F E V
Sbjct: 21 VTAVKNATLHIEKGDIYGVIGYSGAGKSTLVRTINLLQKPTEGQIVINGEKIFDSENPVK 80
Query: 70 FNG-PWDAIREGIAMVYQHFTLVPTFTVLENLYLAM----LSINPGIKISDVEKLAKEKM 124
F G R+ I M++QHF L+ TV N+ A+ + G K +K +K+
Sbjct: 81 FTGAKLREFRQKIGMIFQHFNLLSEKTVFNNVAFALQHSQIEDKNGKKRYLTKKEKNDKV 140
Query: 125 REVGFEVPLNEIVEDLPV----GIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
E+ V L ++ + P G +QRV I +AL + +ILI DE TS L P ++
Sbjct: 141 TELLKLVDLADLSDKYPAQLSGGQKQRVAIARALANDPEILISDEGTSALDPKTTNQILD 200
Query: 181 TLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVV 218
L++L E+ GITV+ ITH+++ VKEI ++V V++ GE++
Sbjct: 201 LLKSLHEKLGITVVLITHEMQVVKEIANKVAVMQNGEII 239
Score = 71.4 bits (172), Expect = 2e-11
Identities = 57/225 (25%), Positives = 115/225 (50%), Gaps = 19/225 (8%)
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
R + AVK + + +G+I G+ G G G+ L + ++ P +G+I + G+ +
Sbjct: 19 RLVTAVKNATLHIEKGDIYGVIGYSGAGKSTLVRTINLLQKPTEGQIVINGEKIFDSENP 78
Query: 327 ERYKSGLAYVPDSRRVGLVLD-MNVV-ENVVLTNLSRVLHKGRISWDK-----------A 373
++ +G +++G++ N++ E V N++ L +I DK
Sbjct: 79 VKF-TGAKLREFRQKIGMIFQHFNLLSEKTVFNNVAFALQHSQIE-DKNGKKRYLTKKEK 136
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
N+ E+++ ++ S K P + LSGG +Q+V + R + +P++++ E T LD T
Sbjct: 137 NDKVTELLKLVDLADLSDKYPAQ-LSGGQKQRVAIARALANDPEILISDEGTSALDPKTT 195
Query: 434 EFIRKTLLKLRDERKGI--LLISTDLDEILQLSDRVAVIYEGKIM 476
I LLK E+ GI +LI+ ++ + +++++VAV+ G+I+
Sbjct: 196 NQI-LDLLKSLHEKLGITVVLITHEMQVVKEIANKVAVMQNGEII 239
>sp|P14175|PROV_ECOLI GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV
>gi|72467|pir||BVECPV glycine betaine/L-proline
transport ATP-binding protein proV - Escherichia coli
>gi|147373|gb|AAA24427.1| (M24856) proV peptide
[Escherichia coli] >gi|1789032|gb|AAC75724.1| (AE000352)
ATP-binding component of transport system for glycine,
betaine and proline [Escherichia coli K12]
>gi|1800065|dbj|BAA16542.1| (D90891) GLYCINE
BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV.
[Escherichia coli]
Length = 400
Score = 120 bits (298), Expect = 4e-26
Identities = 73/213 (34%), Positives = 124/213 (57%), Gaps = 6/213 (2%)
Query: 18 VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG---KEVSFNGPW 74
+ ++ +L +EEGEI ++G +G+GKST++R+L I+PT+G++ + G ++S
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 75 DAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLN 134
+ R+ IAMV+Q F L+P TVL+N M GI + + A + +R+VG E +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL--AGINAEERREKALDALRQVGLENYAH 159
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK-ERGITVI 193
++L G++QRV + +AL +N IL++DE S L P+ E+ L L+ + T++
Sbjct: 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
FI+H L E I DR+ +++ GEVV E+
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
Score = 73.4 bits (177), Expect = 6e-12
Identities = 54/218 (24%), Positives = 108/218 (48%), Gaps = 16/218 (7%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE---- 327
VK S + EGEI I G+ G+G+ + L + P +G++ + G D+ K+ E
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 328 -RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEV 386
R K + + + L+ M V++N + I+ ++ E + + + +
Sbjct: 104 RRKKIAMVF----QSFALMPHMTVLDNTAFG-----MELAGINAEERREKALDALRQVGL 154
Query: 387 LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE 446
+ P LSGG +Q+V + R + P ++++ E LD ++ L+KL+ +
Sbjct: 155 ENYAHSYP-DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213
Query: 447 -RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
++ I+ IS DLDE +++ DR+A++ G+++ +G +E
Sbjct: 214 HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251
>sp|P48243|GLUA_CORGL GLUTAMATE TRANSPORT ATP-BINDING PROTEIN GLUA
>gi|732701|emb|CAA57060.1| (X81191) gluA
[Corynebacterium glutamicum]
Length = 242
Score = 120 bits (298), Expect = 4e-26
Identities = 73/216 (33%), Positives = 122/216 (55%), Gaps = 3/216 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
++M+G+ K + D AL ++L++ G++ +LG +G+GKSTL R + +G I++
Sbjct: 2 IKMTGVQKYFGD-FHALTDIDLEIPRGQVVVVLGPSGSGKSTLCRTINRLETIEEGTIEI 60
Query: 64 FGKEVSFNGPWDA-IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
GK + G A +R + MV+Q F L P T+ +N+ LA + + +K S+ EKLA
Sbjct: 61 DGKVLPEEGKGLANLRADVGMVFQSFNLFPHLTIKDNVTLAPIKVRK-MKKSEAEKLAMS 119
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ VG ++ L G QQRV I AL +N KI++ DEPTS L P V E+ +
Sbjct: 120 LLERVGIANQADKYPAQLSGGQQQRVAIACALAMNPKIMLFDEPTSALDPEMVNEVLDVM 179
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+L + G+T++ +TH++ ++ DRV + G +V
Sbjct: 180 ASLAKEGMTMVCVTHEMGFARKAADRVLFMADGLIV 215
>gi|10954682 probable mikimopine transporter gene~similar to potA gene
[Agrobacterium rhizogenes] >gi|8918682|dbj|BAA97747.1|
(AB039932) hypothetical ABC-transporter gene~similar to
potA gene [Agrobacterium rhizogenes]
>gi|10567346|dbj|BAB16155.1| (AP002086) probable
mikimopine transporter gene~similar to potA gene
[Agrobacterium rhizogenes]
Length = 352
Score = 120 bits (298), Expect = 4e-26
Identities = 88/287 (30%), Positives = 144/287 (49%), Gaps = 23/287 (8%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M + + I K + D AL +NL V EGE +LG +G GKSTL+RI+ G PT G+
Sbjct: 1 MGEISVKNISKSWAD-FKALNNINLDVREGEFLSILGPSGCGKSTLLRIIAGLESPTDGD 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAM-LSINPGIKISDVEKL 119
I + GK+V+ + W + I V+Q+F L P TV +N+ + + L P ++++
Sbjct: 60 IVIAGKQVTNDPVW---KRKIGFVFQNFALWPHLTVFKNVAMGLELRKTPK---DELQQR 113
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL-------TP 172
+ +R V E + + L G QQRV + +A++L +L+LDEP S L
Sbjct: 114 VTKALRMVQLEALADRLPSQLSGGQQQRVALARAIVLKPDVLLLDEPLSALDKNLRQDMQ 173
Query: 173 IEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELA 232
+E+K L +TL G+T +F+TH +E ++DRV V+ RG + + + ++
Sbjct: 174 VELKALQRTL------GLTTVFVTHDQEEALSLSDRVVVMNRGVIEQLDTPDNIYNKPVS 227
Query: 233 RMMVQRDVVMEISKGKSTPGNTIL--KVEDLWVKDDRGLDAVKGVSF 277
+ + KG+ T N ++ + VK D A K V+F
Sbjct: 228 EYVARFVGEAFFFKGEVTGSNELVLDGGNAVAVKSDVPAAAGKAVAF 274
Score = 81.1 bits (197), Expect = 2e-14
Identities = 60/206 (29%), Positives = 99/206 (47%), Gaps = 12/206 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ ++ ++REGE L I G G G+ L +AG+ P G I + GK VT P +R K
Sbjct: 18 ALNNINLDVREGEFLSILGPSGCGKSTLLRIIAGLESPTDGDIVIAGKQVTNDPVWKR-K 76
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
G + + L + V +NV + L + D+ + + + ++ +
Sbjct: 77 IGFVF----QNFALWPHLTVFKNVAMG-----LELRKTPKDELQQRVTKALRMVQLEALA 127
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL-RDERKG 449
+ P LSGG QQ+V + R I+ +P V+++ EP LD + ++ L L R
Sbjct: 128 DRLP-SQLSGGQQQRVALARAIVLKPDVLLLDEPLSALDKNLRQDMQVELKALQRTLGLT 186
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKI 475
+ ++ D +E L LSDRV V+ G I
Sbjct: 187 TVFVTHDQEEALSLSDRVVVMNRGVI 212
>emb|CAC11998.1| (AL445065) ABC transporter related protein [Thermoplasma
acidophilum]
Length = 334
Score = 120 bits (298), Expect = 4e-26
Identities = 72/218 (33%), Positives = 128/218 (58%), Gaps = 5/218 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
++ + K+YP G+ A+ G+N+++EE EI+GLLG+NGAGK+T +++L I PT G +
Sbjct: 9 IKTENLTKIYPGGIKAVDGLNIEIEEAEIYGLLGKNGAGKTTTIKMLTTAIDPTSGNAII 68
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G ++ + + IR I +V Q T +EN L M++ I + E+ K+
Sbjct: 69 GGYDLRKDK--EKIRRIIGVVPQDLTTDADLKGVEN--LRMIASFYNIPKQEAEQRIKDL 124
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
+ V N+ V G+++R+E+I L+ + KIL LDEPT L +++K +R
Sbjct: 125 LEIVDLSDWGNKYVSQYSGGMRKRLELICGLVNSPKILFLDEPTLGLDVNTRSKMWKYIR 184
Query: 184 NL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT 220
++ KE G+T+I +H L+EV ++ DR++++ G+++ T
Sbjct: 185 DIQKELGVTIILTSHYLEEVDQLADRISIIDHGKILIT 222
Score = 74.5 bits (180), Expect = 2e-12
Identities = 61/226 (26%), Positives = 108/226 (46%), Gaps = 11/226 (4%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
I+K E+L G+ AV G++ E+ E EI G+ G G G+ + L P G
Sbjct: 8 IIKTENLTKIYPGGIKAVDGLNIEIEEAEIYGLLGKNGAGKTTTIKMLTTAIDPTSGNAI 67
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
+ G D+ K E+ + + VP D+ VEN L + I +A
Sbjct: 68 IGGYDLRK--DKEKIRRIIGVVPQDLTTDA--DLKGVEN-----LRMIASFYNIPKQEAE 118
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
+ +++E ++ K + SGG ++++ + ++ PK++ + EPT GLD+
Sbjct: 119 QRIKDLLEIVDLSDWGNKY-VSQYSGGMRKRLELICGLVNSPKILFLDEPTLGLDVNTRS 177
Query: 435 FIRKTLLKLRDE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
+ K + ++ E I+L S L+E+ QL+DR+++I GKI+ G
Sbjct: 178 KMWKYIRDIQKELGVTIILTSHYLEEVDQLADRISIIDHGKILITG 223
>sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YEJF
>gi|7445954|pir||C64987 probable oligopeptide transport
protein yejF - Escherichia coli
>gi|405909|gb|AAA16379.1| (U00008) yejF [Escherichia
coli] >gi|1788506|gb|AAC75241.1| (AE000307) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 529
Score = 120 bits (298), Expect = 4e-26
Identities = 131/493 (26%), Positives = 226/493 (45%), Gaps = 48/493 (9%)
Query: 23 VNLKVEEGEIHGLLGENGAGKS----TLMRILYGE-IKPTKGEIKVFGKEVSFNGPWDAI 77
V+L++E GE L+GE+G+GKS +++R+L ++ G+I+ G+ + D
Sbjct: 28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHAS--DQT 85
Query: 78 REG-----IAMVYQH--FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFE 130
G IAM++Q +L P T+ + LY +LS++ G++ + VG
Sbjct: 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY-EVLSLHRGMRREAARGEILNCLDRVGIR 144
Query: 131 VPLNEIVE---DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK- 186
+ + L G +QRV I AL+ ++LI DEPT+ L ++ + LR L+
Sbjct: 145 QAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQG 204
Query: 187 ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISK 246
E + ++FITH L V+++ RV V++ G V + + Q+ + E S
Sbjct: 205 ELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAATLFASP-THPYTQKLLNSEPSG 263
Query: 247 GK---STPGNTILKVEDLWVKDD-------RGLD---AVKGVSFELREGEILGIAGVQGN 293
P +T+L VE L V R +D VK +SF LR GE LG+ G G+
Sbjct: 264 DPVPLPEPASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGS 323
Query: 294 GQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVL-DMNVVE 352
G+ AL + I +G I G+ + L + +P R+ +V D N
Sbjct: 324 GKSTTGLALLRL-INSQGSIIFDGQPLQNLNRRQ-------LLPIRHRIQVVFQDPNSSL 375
Query: 353 NVVLTNLSRV-----LHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVM 407
N L L + +H+ +S + + V+ + + + SGG +Q++
Sbjct: 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIA 435
Query: 408 VGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK-GILLISTDLDEILQLSDR 466
+ R +I +P +I++ EPT LD I L L+ + + L IS DL + L +
Sbjct: 436 IARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQ 495
Query: 467 VAVIYEGKIMSIG 479
V ++ +G+++ G
Sbjct: 496 VIILRQGEVVEQG 508
Score = 82.3 bits (200), Expect = 1e-14
Identities = 65/217 (29%), Positives = 112/217 (50%), Gaps = 7/217 (3%)
Query: 8 GIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKE 67
GI+K D V ++ ++ + GE GL+GE+G+GKST L I ++G I G+
Sbjct: 290 GILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLIN-SQGSIIFDGQP 348
Query: 68 VSFNGPWDA--IREGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
+ IR I +V+Q + +L P VL+ + + P + + E+
Sbjct: 349 LQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAV 408
Query: 124 MREVGFEVPL-NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
M EVG + + + G +QR+ I +AL+L ++ILDEPTS L ++ L
Sbjct: 409 MHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLL 468
Query: 183 RNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVV 218
++L+++ + +FI+H L V+ + +V +LR+GEVV
Sbjct: 469 KSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVV 505
>pir||A71243 probable maltose/maltodextrin transport ATP-binding protein -
Pyrococcus horikoshii >gi|3256589|dbj|BAA29272.1|
(AP000001) 362aa long hypothetical maltose/maltodextrin
transport ATP-binding protein [Pyrococcus horikoshii]
Length = 362
Score = 120 bits (297), Expect = 5e-26
Identities = 78/229 (34%), Positives = 126/229 (54%), Gaps = 11/229 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M +++ IVK + + AL +NLK+++GE LLG +G+GKSTL+ + G KPT G+
Sbjct: 1 MVEIKLENIVKKFGN-FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I K+V+ P D + +V+Q++ L P TV +N+ L + + +++K
Sbjct: 60 IYFDEKDVTELPPKD---RNVGLVFQNWALYPHMTVYKNIAFP-LELRKAPR-EEIDKKV 114
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTS---VLTPIEVKE 177
+E + + + LN L G QQRV I +AL+ ++L+LDEP S L +EV+
Sbjct: 115 REVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
K L+ KE GIT +++TH E + DR+ V+R GE++ EV
Sbjct: 175 ELKRLQ--KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 101 bits (248), Expect = 3e-20
Identities = 72/244 (29%), Positives = 125/244 (50%), Gaps = 19/244 (7%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
+K+E++ VK A+ ++ ++++GE + + G G+G+ L +AGI P GKI
Sbjct: 4 IKLENI-VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVV--ENVVLTNLSRVLHKGRISWDKA 373
KDVT+LP P R VGLV + V N++ L + ++
Sbjct: 63 DEKDVTELP------------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
++ EV + + + P + LSGG QQ+V + R +++EP+V+++ EP LD
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169
Query: 434 EFIRKTLLKLRDERKGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGL 491
+R L +L+ E GI + ++ D E L ++DR+AVI EG+I+ +G +E +
Sbjct: 170 LEVRAELKRLQKE-LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYK 228
Query: 492 LMGG 495
+GG
Sbjct: 229 FVGG 232
>pir||B45917 nucleotide-binding protein proV - Salmonella typhimurium (fragment)
>gi|552022|gb|AAA88621.1| (M26063) proV gene product
[Salmonella typhimurium]
Length = 290
Score = 119 bits (296), Expect = 6e-26
Identities = 73/213 (34%), Positives = 124/213 (57%), Gaps = 6/213 (2%)
Query: 18 VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG---KEVSFNGPW 74
+ ++ +L +EEGEI ++G +G+GKST++R+L I+PT+G++ + G ++S
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 75 DAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLN 134
+ R+ IAMV+Q F L+P TVL+N M GI + + A + +R+VG E +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL--AGIAAQERREKALDALRQVGLENYAH 159
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK-ERGITVI 193
++L G++QRV + +AL +N IL++DE S L P+ E+ L L+ + T++
Sbjct: 160 AYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
FI+H L E I DR+ +++ GEVV E+
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
Score = 73.0 bits (176), Expect = 7e-12
Identities = 58/219 (26%), Positives = 110/219 (49%), Gaps = 18/219 (8%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE---- 327
VK S + EGEI I G+ G+G+ + L + P +G++ + G D+ K+ E
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 328 -RYKSGLAYVPDSRRVGLVLDMNVVENVVL-TNLSRVLHKGRISWDKANEMTNEVVEKFE 385
R K + + + L+ M V++N L+ + + R +KA + +V
Sbjct: 104 RRKKIAMVF----QSFALMPHMTVLDNTAFGMELAGIAAQERR--EKALDALRQVG---- 153
Query: 386 VLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD 445
L + A LSGG +Q+V + R + P ++++ E LD ++ L+KL+
Sbjct: 154 -LENYAHAYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 446 E-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ ++ I+ IS DLDE +++ DR+A++ G+++ +G +E
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251
>dbj|BAB03891.1| (AP001507) amino acid ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 247
Score = 119 bits (296), Expect = 6e-26
Identities = 68/207 (32%), Positives = 118/207 (56%), Gaps = 6/207 (2%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDA 76
V L+G++L VE G++ ++G +G+GK+TL+R L PT G +++ + + F+G +
Sbjct: 14 VEVLKGLDLTVERGKVVVVIGPSGSGKTTLLRCLNILETPTSGSVQIENQTLDFSGKVSS 73
Query: 77 -----IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEV 131
R MV+Q + L P TVL+N+ +++ K + VE+ AK+ + +VG
Sbjct: 74 KEIANFRRLTGMVFQSYNLFPHMTVLQNVMEGPMTVKKEAK-AQVEEKAKQLLAKVGLAD 132
Query: 132 PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGIT 191
L G QQRV I +AL + K+++ DEPTS L P V E+ + ++ L E G+T
Sbjct: 133 KETVYPFQLSGGQQQRVGIARALAMEPKVMLFDEPTSALDPELVGEVLRVMKELAEEGMT 192
Query: 192 VIFITHKLKEVKEITDRVTVLRRGEVV 218
+I +TH+++ +E+ D V + G++V
Sbjct: 193 MIVVTHEMRFAQEVADEVIFMDDGKIV 219
Score = 70.6 bits (170), Expect = 4e-11
Identities = 58/242 (23%), Positives = 117/242 (47%), Gaps = 29/242 (11%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
++ V+ L+ K ++ +KG+ + G+++ + G G+G+ L L + P G ++
Sbjct: 1 MIAVQSLYKKFGE-VEVLKGLDLTVERGKVVVVIGPSGSGKTTLLRCLNILETPTSGSVQ 59
Query: 315 L-------LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR 367
+ GK +K A+ R +G+ + + L M V++NV+ +G
Sbjct: 60 IENQTLDFSGKVSSKEIANFRRLTGMVF----QSYNLFPHMTVLQNVM---------EGP 106
Query: 368 ISWDKANEMTNEVVEKFEVLLSSTKAPIKH------LSGGNQQKVMVGREIIREPKVIVV 421
++ K E +V EK + LL+ K LSGG QQ+V + R + EPKV++
Sbjct: 107 MTVKK--EAKAQVEEKAKQLLAKVGLADKETVYPFQLSGGQQQRVGIARALAMEPKVMLF 164
Query: 422 SEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
EPT LD + + + +L +E +++++ ++ +++D V + +GKI+ G
Sbjct: 165 DEPTSALDPELVGEVLRVMKELAEEGMTMIVVTHEMRFAQEVADEVIFMDDGKIVERGTP 224
Query: 482 EE 483
++
Sbjct: 225 DD 226
>sp|P17328|PROV_SALTY GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV
>gi|72466|pir||QREBVT glycine betaine/proline transport
protein proV - Salmonella typhimurium
>gi|47831|emb|CAA36921.1| (X52693) proV protein (AA
1-400) [Salmonella typhimurium]
Length = 400
Score = 119 bits (295), Expect = 8e-26
Identities = 73/213 (34%), Positives = 124/213 (57%), Gaps = 6/213 (2%)
Query: 18 VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG---KEVSFNGPW 74
+ ++ +L +EEGEI ++G +G+GKST++R+L I+PT+G++ + G ++S
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 75 DAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLN 134
+ R+ IAMV+Q F L+P TVL+N M GI + + A + +R+VG E +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL--AGIAAQERREKALDALRQVGLENYRH 159
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLK-ERGITVI 193
++L G++QRV + +AL +N IL++DE S L P+ E+ L L+ + T++
Sbjct: 160 AYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
FI+H L E I DR+ +++ GEVV E+
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
Score = 72.6 bits (175), Expect = 9e-12
Identities = 58/219 (26%), Positives = 110/219 (49%), Gaps = 18/219 (8%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE---- 327
VK S + EGEI I G+ G+G+ + L + P +G++ + G D+ K+ E
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 328 -RYKSGLAYVPDSRRVGLVLDMNVVENVVL-TNLSRVLHKGRISWDKANEMTNEVVEKFE 385
R K + + + L+ M V++N L+ + + R +KA + +V
Sbjct: 104 RRKKIAMVF----QSFALMPHMTVLDNTAFGMELAGIAAQERR--EKALDALRQVG---- 153
Query: 386 VLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD 445
L + A LSGG +Q+V + R + P ++++ E LD ++ L+KL+
Sbjct: 154 -LENYRHAYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 446 E-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ ++ I+ IS DLDE +++ DR+A++ G+++ +G +E
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251
>sp|P44785|ABC_HAEIN ATP-BINDING PROTEIN ABC >gi|1073885|pir||C64082 ATP-binding protein
homolog HI0621 - Haemophilus influenzae (strain Rd
KW20) >gi|1573615|gb|AAC22280.1| (U32744) ABC
transporter, ATP-binding protein [Haemophilus influenzae
Rd]
Length = 345
Score = 119 bits (295), Expect = 8e-26
Identities = 79/234 (33%), Positives = 132/234 (55%), Gaps = 26/234 (11%)
Query: 4 VEMSGIVKVYP---DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
++++ I K++ + AL V+L +E+G+I G++G +GAGKSTL+R + KPT G
Sbjct: 2 IKLNNIXKIFELPXKKLTALDNVSLNIEKGQICGVIGASGAGKSTLIRCVNLLEKPTSGS 61
Query: 61 IKVFGKEVSFNGPWDAI--REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+ V G E++ + + R I M++QHF L+ + TV EN+ L + ++E
Sbjct: 62 VIVDGVELTKLSDRELVLARRQIGMIFQHFNLLSSRTVFENVALPL----------ELES 111
Query: 119 LAKEKMRE--------VGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
+K K++E VG + +L G +QRV I +AL + K+L+ DE TS L
Sbjct: 112 ESKAKIQEKITALLDLVGLSEKRDAYPSNLSGGQKQRVAIARALASDPKVLLCDEATSAL 171
Query: 171 TPIEVKELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVV--GTV 221
P + + K L+ + GIT++ ITH+++ VK+I D+V V+ +G +V GTV
Sbjct: 172 DPATTQSILKLLKEINRTLGITILLITHEMEVVKQICDQVAVIDQGRLVEQGTV 225
Score = 83.5 bits (203), Expect = 5e-15
Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 22/238 (9%)
Query: 253 NTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGK 312
N I K+ +L K L A+ VS + +G+I G+ G G G+ L + + P G
Sbjct: 5 NNIXKIFELPXKK---LTALDNVSLNIEKGQICGVIGASGAGKSTLIRCVNLLEKPTSGS 61
Query: 313 IELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDK 372
+ + G ++TKL E V R++G++ ++ L + V + +
Sbjct: 62 VIVDGVELTKLSDRE-------LVLARRQIGMIF-----QHFNLLSSRTVFENVALPLEL 109
Query: 373 ANEMTNEVVEKFEVLLSSTKAPIK------HLSGGNQQKVMVGREIIREPKVIVVSEPTQ 426
+E ++ EK LL K +LSGG +Q+V + R + +PKV++ E T
Sbjct: 110 ESESKAKIQEKITALLDLVGLSEKRDAYPSNLSGGQKQRVAIARALASDPKVLLCDEATS 169
Query: 427 GLDIGATEFIRKTLLKL-RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
LD T+ I K L ++ R ILLI+ +++ + Q+ D+VAVI +G+++ G E
Sbjct: 170 ALDPATTQSILKLLKEINRTLGITILLITHEMEVVKQICDQVAVIDQGRLVEQGTVGE 227
>emb|CAB76078.1| (AL157953) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 368
Score = 119 bits (295), Expect = 8e-26
Identities = 84/232 (36%), Positives = 128/232 (54%), Gaps = 16/232 (6%)
Query: 4 VEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+ SG+ KVY V AL GV+L V EGE++G++G++GAGKS+L+R + +PT G
Sbjct: 19 ITTSGLTKVYRSRGREVTALDGVDLHVREGEVYGVIGQSGAGKSSLIRCVNLLERPTAGT 78
Query: 61 IKVFGKEVSF---NGPWDA-----IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIK 112
+ V G +++ GP R I MV+QHF L+ + TV +N+ L + + K
Sbjct: 79 VTVAGADLTALAGRGPRAGRELRQARSRIGMVFQHFNLLSSRTVQDNVELPLEILGKSGK 138
Query: 113 ISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTP 172
+ + A E + VG L G +QRV I +AL + K+L+ DE TS L P
Sbjct: 139 --ERSRKALELLDLVGLADKARAYPAQLSGGQKQRVGIARALAGDPKVLLSDEATSALDP 196
Query: 173 IEVKELFKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVV--GTV 221
+ + + LR+L ++ G+TV+ ITH++ VK I D ++ RG VV GTV
Sbjct: 197 ETTRSILQLLRDLNRQLGLTVLLITHEMDVVKSICDSAALMDRGRVVESGTV 248
Score = 77.3 bits (187), Expect = 4e-13
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 13/224 (5%)
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
R + A+ GV +REGE+ G+ G G G+ L + + P G + + G D+T L A
Sbjct: 33 REVTALDGVDLHVREGEVYGVIGQSGAGKSSLIRCVNLLERPTAGTVTVAGADLTAL-AG 91
Query: 327 ERYKSGLAYVPDSRRVGLV------LDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEV 380
++G R+G+V L V++ V L + G+ KA E+ + V
Sbjct: 92 RGPRAGRELRQARSRIGMVFQHFNLLSSRTVQDNVELPLEILGKSGKERSRKALELLDLV 151
Query: 381 VEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTL 440
L +A LSGG +Q+V + R + +PKV++ E T LD T I + L
Sbjct: 152 -----GLADKARAYPAQLSGGQKQRVGIARALAGDPKVLLSDEATSALDPETTRSILQLL 206
Query: 441 LKL-RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L R +LLI+ ++D + + D A++ G+++ G E
Sbjct: 207 RDLNRQLGLTVLLITHEMDVVKSICDSAALMDRGRVVESGTVGE 250
>pir||H70432 ABC transporter - Aquifex aeolicus >gi|2983897|gb|AAC07448.1|
(AE000744) ABC transporter [Aquifex aeolicus]
Length = 247
Score = 118 bits (294), Expect = 1e-25
Identities = 77/231 (33%), Positives = 132/231 (56%), Gaps = 7/231 (3%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VE + Y + VV +G++ KVE +I ++G +GAGK+TL+R++ G +KP KGE+++
Sbjct: 3 VEFEEVYSGYGNTVVH-KGISFKVESSQIVAIVGGSGAGKTTLLRLILGLLKPLKGEVRL 61
Query: 64 FGKEVS--FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
FGK + +R+ + +V+Q L + TVLEN+ ++ + S VE A
Sbjct: 62 FGKSIKNLSEEELQKLRDRMGVVFQFSALFGSMTVLENVMYPVIK-KRKLDRSIVEMNAC 120
Query: 122 EKMREVGFE-VPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
K+ G + + ++L G++++ + +AL L+ ++LILDEPTS L PI +E
Sbjct: 121 FKLSVCGLKPEDFYKYPQELSGGMKKKTALARALSLDPELLILDEPTSGLDPISAEEFDN 180
Query: 181 TLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
++ +++ G TVI +TH L ++ I D+V LR G++V K E+ E E
Sbjct: 181 LIKTVRDTFGTTVIMVTHDLPSLR-ICDKVLALREGKIVFDGKPQELFESE 230
Score = 78.8 bits (191), Expect = 1e-13
Identities = 64/221 (28%), Positives = 110/221 (48%), Gaps = 24/221 (10%)
Query: 273 KGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSG 332
KG+SF++ +I+ I G G G+ L + G+ P KG++ L GK + L E K
Sbjct: 19 KGISFKVESSQIVAIVGGSGAGKTTLLRLILGLLKPLKGEVRLFGKSIKNLSEEELQKL- 77
Query: 333 LAYVPDSRRVGLVLDMNVV--ENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
R+G+V + + VL N+ + K R K + E+ F++ +
Sbjct: 78 ------RDRMGVVFQFSALFGSMTVLENVMYPVIKKR----KLDRSIVEMNACFKLSVCG 127
Query: 391 TKAPI-----KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD-IGATEFIRKTLLKLR 444
K + LSGG ++K + R + +P+++++ EPT GLD I A EF L+K
Sbjct: 128 LKPEDFYKYPQELSGGMKKKTALARALSLDPELLILDEPTSGLDPISAEEF--DNLIKTV 185
Query: 445 DERKG--ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ G +++++ DL L++ D+V + EGKI+ GK +E
Sbjct: 186 RDTFGTTVIMVTHDLPS-LRICDKVLALREGKIVFDGKPQE 225
>pir||JC5348 cdd4 protein - Clostridium difficile >gi|1770140|emb|CAA63569.1|
(X92982) cdd4 [Clostridium difficile]
Length = 301
Score = 118 bits (292), Expect = 2e-25
Identities = 71/243 (29%), Positives = 133/243 (54%), Gaps = 20/243 (8%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDA 76
+ ++ ++L+V +G ++G LG NGAGKST +++L G KPT+G I + GKE++
Sbjct: 17 IFRVKDIDLRVPQGAVYGFLGPNGAGKSTTLKMLLGLAKPTQGNINILGKELNEKNRISI 76
Query: 77 IREGIAMV-----YQHFTLVPTFTVLENLY-LAMLSINPGIKISDVEKLAKEKMREVGFE 130
+++ +++ Y H T + T+++ L L ++N +KI V E
Sbjct: 77 LKDIGSLIESPSYYGHLTGLENMTIMQRLLDLPKKNVNEALKI-------------VRLE 123
Query: 131 VPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-G 189
N+ V +G++QR+ I A+M K+LILDEPT+ L P ++E+ + +++L E+ G
Sbjct: 124 NQKNKKVSQYSLGMKQRLGIAMAIMKFPKLLILDEPTNGLDPAGIEEIRELIKSLPEKYG 183
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKS 249
+TV+ +H L E+ +I + ++ GE+V E+ R +++ ++ V+ K +
Sbjct: 184 MTVLISSHLLSEIDQIATSIGIINHGELVFQDSIKELHNRGQSQIAIKTKNVVSAQKLLN 243
Query: 250 TPG 252
T G
Sbjct: 244 TKG 246
>sp|P42332|BCRA_BACLI BACITRACIN TRANSPORT ATP-BINDING PROTEIN BCRA
>gi|7445603|pir||S77627 bacitracin transport protein
bcrA - Bacillus licheniformis >gi|437315|gb|AAA99504.1|
(L20573) TTG start codon [Bacillus licheniformis]
Length = 306
Score = 118 bits (292), Expect = 2e-25
Identities = 73/229 (31%), Positives = 129/229 (55%), Gaps = 9/229 (3%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T ++ + + K+Y ++ +N+ V++G+I+G LG NGAGK+T +R+L G IKPT G+I
Sbjct: 3 TIIKTTDLTKMY-GSQKSVDHLNINVKQGDIYGFLGRNGAGKTTTIRMLLGLIKPTSGQI 61
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
++FG E F + +R I + + T ENL IN I +
Sbjct: 62 EIFG-ENFFKNKKEILRR-IGSIVEVPGFYANLTARENLL-----INAKIIGIHKKNAID 114
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + VG + ++V +G++QR+ I +AL+ ++LILDEPT+ L PI +KE+ +
Sbjct: 115 EVLEIVGLQHETKKLVGKFSLGMKQRLGIARALLHYPELLILDEPTNGLDPIGIKEMRRL 174
Query: 182 LRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
+ +L KER IT+ +H L E++++ D V ++ G+++ + + +R
Sbjct: 175 IHSLAKERNITIFISSHILSEIEQLVDHVGIIHEGKLLEEIPFDHLKKR 223
Score = 78.8 bits (191), Expect = 1e-13
Identities = 63/228 (27%), Positives = 110/228 (47%), Gaps = 21/228 (9%)
Query: 253 NTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGK 312
+TI+K DL K +V ++ +++G+I G G G G+ L G+ P G+
Sbjct: 2 STIIKTTDL-TKMYGSQKSVDHLNINVKQGDIYGFLGRNGAGKTTTIRMLLGLIKPTSGQ 60
Query: 313 IELLGKDVTKLPAHERYKSG-LAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWD 371
IE+ G++ K + G + VP G ++ EN+++ +HK
Sbjct: 61 IEIFGENFFKNKKEILRRIGSIVEVP-----GFYANLTARENLLINAKIIGIHK------ 109
Query: 372 KANEMTNEVVEKFEV--LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD 429
N + E E+ L TK + S G +Q++ + R ++ P+++++ EPT GLD
Sbjct: 110 -----KNAIDEVLEIVGLQHETKKLVGKFSLGMKQRLGIARALLHYPELLILDEPTNGLD 164
Query: 430 IGATEFIRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIM 476
+ +R+ + L ER + IS+ L EI QL D V +I+EGK++
Sbjct: 165 PIGIKEMRRLIHSLAKERNITIFISSHILSEIEQLVDHVGIIHEGKLL 212
>pir||T45265 cobalt transport ATP-binding protein O homolog [imported] -
Methanobacterium thermoautotrophicum
>gi|1419078|emb|CAA63958.1| (X94292) cbiO
[Methanobacterium thermoautotrophicum]
Length = 277
Score = 118 bits (292), Expect = 2e-25
Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 3/219 (1%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M +E I YPDG AL+G++ ++GE+ LLG NGAGKSTL G ++PT G+
Sbjct: 1 MKIIEAVNIRYTYPDGTEALKGIDFHAKKGEVVALLGPNGAGKSTLFLHFNGILQPTSGK 60
Query: 61 IKVFGKEVSFN-GPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
+ V GKE+ ++ +R+ + +V+Q+ F + +A +N G+ +VE+
Sbjct: 61 VLVDGKEIDYSKSGLIKVRQKVGIVFQN-PDDQLFAPRVDEDVAFGPLNMGLDEDEVEER 119
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
K+ +R+VG + L G ++RV I L + I+ILDEPTS L P ++
Sbjct: 120 VKDALRKVGMSGTRTD-PHHLSGGEKKRVAIAGILAMKPDIMILDEPTSGLDPRGASQIL 178
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ L L E G+T+I TH + +DR+ ++ GE++
Sbjct: 179 RLLHELNEEGMTIIISTHDVDLAPLYSDRIYIISGGEII 217
Score = 89.3 bits (218), Expect = 9e-17
Identities = 65/220 (29%), Positives = 111/220 (49%), Gaps = 23/220 (10%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G +A+KG+ F ++GE++ + G G G+ L GI P GK+ + GK++ +
Sbjct: 16 GTEALKGIDFHAKKGEVVALLGPNGAGKSTLFLHFNGILQPTSGKVLVDGKEI------D 69
Query: 328 RYKSGLAYVPDSRRVGLVLDM--------NVVENVVLTNLSRVLHKGRISWDKANEMTNE 379
KSGL V ++VG+V V E+V L+ L + D+ E +
Sbjct: 70 YSKSGLIKV--RQKVGIVFQNPDDQLFAPRVDEDVAFGPLNMGLDE-----DEVEERVKD 122
Query: 380 VVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKT 439
+ K V +S T+ HLSGG +++V + + +P ++++ EPT GLD I +
Sbjct: 123 ALRK--VGMSGTRTDPHHLSGGEKKRVAIAGILAMKPDIMILDEPTSGLDPRGASQILRL 180
Query: 440 LLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
L +L +E I++ + D+D SDR+ +I G+I+S G
Sbjct: 181 LHELNEEGMTIIISTHDVDLAPLYSDRIYIISGGEIISEG 220
>sp|P73450|NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC >gi|7445984|pir||S77387
nitrate transport protein C-2 - Synechocystis sp.
(strain PCC 6803) >gi|1652569|dbj|BAA17490.1| (D90906)
nitrate transport protein NrtC [Synechocystis sp.]
Length = 670
Score = 118 bits (292), Expect = 2e-25
Identities = 71/220 (32%), Positives = 125/220 (56%), Gaps = 11/220 (5%)
Query: 1 MTAVEMSGIVKVYP--DG--VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKP 56
M +E+ + +++P DG +AL+ + LK+ +GE L+G +G GKSTL+ ++ G KP
Sbjct: 2 MPFIEIDHVDRIFPLPDGGRYIALKNIELKISQGEFISLIGHSGCGKSTLLNMISGLDKP 61
Query: 57 TKGEIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDV 116
T G + + GKE++ GP + V+Q+++L+P TV +N+ LA+ + + +
Sbjct: 62 TFGGVIMEGKEITEPGPERMV------VFQNYSLLPWLTVRQNIALAVNRVLRDLPKPEQ 115
Query: 117 EKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
EK+ + + VG + ++ +L G++QRV I +AL K+L+LDEP L +
Sbjct: 116 EKIIDDNIALVGLQRAAHKRPGELSGGMKQRVAIARALSTRPKVLLLDEPFGALDALTRG 175
Query: 177 ELFKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRG 215
L + L + +E G+T I +TH + E ++DRV +L G
Sbjct: 176 NLQERLMEIVQESGVTCIMVTHDVDEALLLSDRVVMLTTG 215
Score = 73.4 bits (177), Expect = 6e-12
Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+K + ++ +GE + + G G G+ L ++G+ P G + + GK++T+ P ER
Sbjct: 24 ALKNIELKISQGEFISLIGHSGCGKSTLLNMISGLDKPTFGGVIMEGKEITE-PGPERMV 82
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
Y L+ + V +N+ L ++RVL D ++++ L+
Sbjct: 83 VFQNY-------SLLPWLTVRQNIALA-VNRVLR------DLPKPEQEKIIDDNIALVGL 128
Query: 391 TKAPIK---HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+A K LSGG +Q+V + R + PKV+++ EP LD +++ L+++ E
Sbjct: 129 QRAAHKRPGELSGGMKQRVAIARALSTRPKVLLLDEPFGALDALTRGNLQERLMEIVQE- 187
Query: 448 KGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEK 488
G+ ++++ D+DE L LSDRV ++ G IG+ E + +
Sbjct: 188 SGVTCIMVTHDVDEALLLSDRVVMLTTGPEAHIGQILEVPIPR 230
>pir||C64666 glutamine transport protein glnQ - Helicobacter pylori (strain
26695) >gi|2314330|gb|AAD08217.1| (AE000623) glutamine
ABC transporter, ATP-binding protein (glnQ)
[Helicobacter pylori 26695]
Length = 248
Score = 117 bits (291), Expect = 2e-25
Identities = 67/215 (31%), Positives = 121/215 (56%), Gaps = 3/215 (1%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E G+ K Y + +V L G+N + +GE+ +LG +G GKST ++ L G K +GEI
Sbjct: 5 LETKGLKKTYQNHLV-LDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILF 63
Query: 64 FGKEVSFNGP-WDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
++ W+ +R+ I MV+Q++ L P VL+N+ LA + + K +V A E
Sbjct: 64 ENTNLNNKATNWNQMRQKIGMVFQNYELFPHLNVLDNILLAPMKVQKRSK-DEVISQAIE 122
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
++ VG E ++L G +QRV I+++L + KI++ DE T+ L P VKE+ + +
Sbjct: 123 LLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEMVKEVLEVI 182
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
L G++++ +TH++K ++I ++ G++
Sbjct: 183 LELATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKI 217
>pir||H64716 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2314761|gb|AAD08616.1| (AE000655) ABC
transporter, ATP-binding protein (abc) [Helicobacter
pylori 26695]
Length = 327
Score = 117 bits (291), Expect = 2e-25
Identities = 75/226 (33%), Positives = 129/226 (56%), Gaps = 5/226 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VE+ I K+Y +G AL+GVNL++++G+I G++G +GAGKSTL+R++ +P+ GE+ V
Sbjct: 3 VELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLV 62
Query: 64 FGKEVSFNGPWD--AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
G + P + R+ I M++QHF L+ V EN+ A L I K + ++
Sbjct: 63 NGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFA-LEIARWEK-NKIKSRVH 120
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + VG E ++ + L G +QRV I ++L +L+ DE TS L +
Sbjct: 121 ELLELVGLEDKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILTL 180
Query: 182 LRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
L + K+ ++++FITH+++ VKE+ +++ V+ GE+V E+
Sbjct: 181 LSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEI 226
Score = 85.0 bits (207), Expect = 2e-15
Identities = 62/222 (27%), Positives = 110/222 (48%), Gaps = 13/222 (5%)
Query: 266 DRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPA 325
+ G A+KGV+ EL++G+ILG+ G G G+ L + + P G++ + G ++ KL
Sbjct: 13 ENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLKLKP 72
Query: 326 HERYKSGLAYVPDSRRVGLVLDMNVVENVVLT-NLSRVLHKGRISWDKANEMTNEVVEKF 384
E K+ + L+ NV ENV ++R W+K N++ + V E
Sbjct: 73 KELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIAR--------WEK-NKIKSRVHELL 123
Query: 385 EVLLSSTKAPI--KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
E++ K K LSGG +Q+V + R + P +++ E T LD T I L
Sbjct: 124 ELVGLEDKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILTLLSG 183
Query: 443 LRDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
++ + I+ I+ +++ + +L +++ VI G+I+ G EE
Sbjct: 184 IQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEE 225
>pir||F71800 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4156118|gb|AAD07069.1| (AE001570) abc
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 327
Score = 117 bits (291), Expect = 2e-25
Identities = 74/226 (32%), Positives = 130/226 (56%), Gaps = 5/226 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VE+ I K+Y +G AL+GVNL++++G+I G++G +GAGKSTL+R++ +P+ GE+ V
Sbjct: 3 VELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLV 62
Query: 64 FGKEVSFNGPWD--AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
G + P + R+ I M++QHF L+ V EN+ A L I K + ++
Sbjct: 63 NGVNLLNLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFA-LEIARWEK-TKIKSRVH 120
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + VG E ++ + L G +QRV I ++L +L+ DE TS L +
Sbjct: 121 ELLELVGLEDKVHFYPKQLSGGQKQRVAIARSLANCPNLLLCDEATSALDSKTTHSILTL 180
Query: 182 LRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
L ++++ ++++FITH+++ VKE+ +++ V+ GE+V E+
Sbjct: 181 LSGIQKKFDLSIVFITHQIEVVKELCNQMCVISSGEIVERGSVEEI 226
Score = 80.4 bits (195), Expect = 4e-14
Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 266 DRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPA 325
+ G A+KGV+ EL++G+ILG+ G G G+ L + + P G++ + G ++ L
Sbjct: 13 ENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLNLKP 72
Query: 326 HERYKSGLAYVPDSRRVGLVLDMNVVENVVLT-NLSRVLHKGRISWDKANEMTNEVVEKF 384
E K+ + L+ NV ENV ++R W+K ++ + V E
Sbjct: 73 KELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIAR--------WEK-TKIKSRVHELL 123
Query: 385 EVLLSSTKAPI--KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
E++ K K LSGG +Q+V + R + P +++ E T LD T I L
Sbjct: 124 ELVGLEDKVHFYPKQLSGGQKQRVAIARSLANCPNLLLCDEATSALDSKTTHSILTLLSG 183
Query: 443 LRDE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
++ + I+ I+ ++ + +L +++ VI G+I+ G EE
Sbjct: 184 IQKKFDLSIVFITHQIEVVKELCNQMCVISSGEIVERGSVEE 225
>pir||A83621 probable ATP-binding component of ABC transporter PA0206 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9946041|gb|AAG03595.1|AE004458_10 (AE004458)
probable ATP-binding component of ABC transporter
[Pseudomonas aeruginosa]
Length = 370
Score = 117 bits (291), Expect = 2e-25
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 13/235 (5%)
Query: 3 AVEMSGIVKVYPD---GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
AV + + KVY D G VAL+ V+L + + E LLG +G GK+TL+R++ G PT+G
Sbjct: 11 AVSIRAVRKVYGDPESGPVALKRVDLDIRDNEFFTLLGPSGCGKTTLLRMIAGFEFPTEG 70
Query: 60 EIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
EI ++G+ ++ P++ + V+QH+ L P ++ ENL + S G + E
Sbjct: 71 EILLYGENIAARPPFE---RPVNTVFQHYALFPHMSIAENLAFGLESRPLGRSLGKAE-- 125
Query: 120 AKEKMREVGFEVPLNEIVE----DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
E++RE+ V + + L G QQRV + +AL ++L+LDEP S L
Sbjct: 126 IAERVREMLALVQMERFADRRPGQLSGGQQQRVALARALAPQPRVLLLDEPLSALDLKLR 185
Query: 176 KELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
+ + + L+ ++ + GIT IF+TH +E ++DR+ VL G+V E+ ER
Sbjct: 186 QAMREELKAIQAKTGITFIFVTHDQEEALTMSDRIAVLSEGQVQQVGPPEEIYER 240
Score = 93.2 bits (228), Expect = 6e-18
Identities = 64/232 (27%), Positives = 118/232 (50%), Gaps = 10/232 (4%)
Query: 254 TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKI 313
+I V ++ + G A+K V ++R+ E + G G G+ L +AG P +G+I
Sbjct: 13 SIRAVRKVYGDPESGPVALKRVDLDIRDNEFFTLLGPSGCGKTTLLRMIAGFEFPTEGEI 72
Query: 314 ELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKA 373
L G+++ P ER + + + L M++ EN+ SR L + + +
Sbjct: 73 LLYGENIAARPPFERPVNTV-----FQHYALFPHMSIAENLAFGLESRPLGRS-LGKAEI 126
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
E E++ ++ + + P LSGG QQ+V + R + +P+V+++ EP LD+
Sbjct: 127 AERVREMLALVQMERFADRRP-GQLSGGQQQRVALARALAPQPRVLLLDEPLSALDLKLR 185
Query: 434 EFIRKTLLKLRDERKGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ +R+ LK + GI + ++ D +E L +SDR+AV+ EG++ +G EE
Sbjct: 186 QAMREE-LKAIQAKTGITFIFVTHDQEEALTMSDRIAVLSEGQVQQVGPPEE 236
>pir||E83012 probable ATP-binding component of ABC transporter PA5074 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9951367|gb|AAG08459.1|AE004920_9 (AE004920) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 244
Score = 117 bits (291), Expect = 2e-25
Identities = 72/219 (32%), Positives = 123/219 (55%), Gaps = 5/219 (2%)
Query: 4 VEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+E+ ++KV+ V A+ V+ +V GE+ ++G +G+GKST +R L G + +G
Sbjct: 2 IEVRNLLKVFDTRGQVVRAVDDVSTRVARGEVLVVIGPSGSGKSTFLRCLNGLEEFDEGS 61
Query: 61 IKVFGKEVSF-NGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
+ + G +++ +A R + MV+QHF L P TVLENL LA + K ++ E
Sbjct: 62 VSIDGVDLADPRTDINAYRREVGMVFQHFNLFPHMTVLENLCLAQRVVRKRGK-AEREAK 120
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
A+ + +VG +E L G QQRV I +AL ++ K+++ DEPTS L P V E+
Sbjct: 121 ARALLAKVGIGQKADEYPSRLSGGQQQRVAIARALCMDPKVMLFDEPTSALDPEMVGEVL 180
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
++ L G+T++ +TH++ +E+ DRV G+++
Sbjct: 181 DVMKTLAVEGMTMVCVTHEMGFAREVADRVLFFDHGKLL 219
>pir||B71030 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3257959|dbj|BAA30642.1| (AP000006) 226aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 226
Score = 117 bits (290), Expect = 3e-25
Identities = 76/233 (32%), Positives = 127/233 (53%), Gaps = 16/233 (6%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
ALRG+ +EEGEI GL+G NGAGKST ++IL ++PT G+ +VFG +V D +R
Sbjct: 3 ALRGITFSIEEGEIFGLIGPNGAGKSTTLKILATLLRPTGGKAEVFGFDVVKEA--DEVR 60
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVP-----L 133
+ I+ + + T LE YL ++ K+ + EKM ++G E+ L
Sbjct: 61 KLISYLPEEAGAYKRLTGLE--YLKFMA-----KLYAKDSRKAEKMLKLGIELSGLGDRL 113
Query: 134 NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVI 193
+ + G+ +R+ + +ALM+ K+ ILDEPTS L + E+ + +R + G+T +
Sbjct: 114 RDKISTYSKGMVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRRIIREFSKEGVTFL 173
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISK 246
+H + EV+ + DRV ++ +G++V E+ E+ A + +V ME K
Sbjct: 174 ISSHNMLEVEYLCDRVALIHKGKIVEVGSPHELKEKHKAENL--EEVFMEAVK 224
Score = 85.8 bits (209), Expect = 1e-15
Identities = 62/215 (28%), Positives = 111/215 (50%), Gaps = 10/215 (4%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
+ A++G++F + EGEI G+ G G G+ + LA + P GK E+ G DV K +
Sbjct: 1 MKALRGITFSIEEGEIFGLIGPNGAGKSTTLKILATLLRPTGGKAEVFGFDVVK--EADE 58
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
+ ++Y+P+ G + +E L ++++ K KA +M +E L
Sbjct: 59 VRKLISYLPEE--AGAYKRLTGLE--YLKFMAKLYAKDS---RKAEKMLKLGIE-LSGLG 110
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
+ I S G +++++ R ++ +PK+ ++ EPT GLDI IR+ + + E
Sbjct: 111 DRLRDKISTYSKGMVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRRIIREFSKEGV 170
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L+ S ++ E+ L DRVA+I++GKI+ +G E
Sbjct: 171 TFLISSHNMLEVEYLCDRVALIHKGKIVEVGSPHE 205
>pir||E72364 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981058|gb|AAD35629.1|AE001729_9 (AE001729)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 244
Score = 117 bits (290), Expect = 3e-25
Identities = 68/214 (31%), Positives = 121/214 (55%), Gaps = 4/214 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L+G++ ++EEGEI GL+G NGAGK+T +RI+ IKP+ G + VFGK V P + +R+
Sbjct: 19 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHE-VRK 76
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
I+ + + +E YL ++ S++E++ + G + + V
Sbjct: 77 LISYLPEEAGAYRNMQGIE--YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 134
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKL 199
G+ +++ I +ALM+N ++ ILDEPTS L + +E+ K L+ + G+T++ +H +
Sbjct: 135 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 194
Query: 200 KEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
EV+ + DR+ ++ G +V T E+ ER A+
Sbjct: 195 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 228
Score = 88.5 bits (216), Expect = 1e-16
Identities = 64/214 (29%), Positives = 106/214 (48%), Gaps = 10/214 (4%)
Query: 270 DAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERY 329
+ +KG+SFE+ EGEI G+ G G G+ ++ + P G + + GK+V + P HE
Sbjct: 17 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVR 75
Query: 330 KSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLS 389
K ++Y+P+ G +M +E L V S + EM E L
Sbjct: 76 KL-ISYLPEE--AGAYRNMQGIEY-----LRFVAGFYASSSSEIEEMVERATE-IAGLGE 126
Query: 390 STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
K + S G +K+++ R ++ P++ ++ EPT GLD+ +RK L + E
Sbjct: 127 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 186
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
IL+ S ++ E+ L DR+A+I+ G I+ G EE
Sbjct: 187 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 220
>sp|P21629|BRAF_PSEAE HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN BRAF >gi|77619|pir||D36125 branched-chain amino
acid transport protein braF - Pseudomonas aeruginosa
(strain PAO) >gi|11347526|pir||E83509 branched-chain
amino acid transport protein BraF PA1071 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|216866|dbj|BAA14257.1| (D90223) BraF (peripheral
membrane protein, ATP-binding protein) [Pseudomonas
aeruginosa] >gi|9946987|gb|AAG04460.1|AE004539_2
(AE004539) branched-chain amino acid transport protein
BraF [Pseudomonas aeruginosa]
Length = 255
Score = 116 bits (289), Expect = 4e-25
Identities = 75/226 (33%), Positives = 120/226 (52%), Gaps = 15/226 (6%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+SG+ + G++A+ GVNLKVEE ++ ++G NGAGK+T+ L G +PT G I++
Sbjct: 6 LEVSGLTMRF-GGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRL 64
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-----------YLAMLSINPGIK 112
G+E+ R+G+ +Q+ L T +ENL +LA L P +
Sbjct: 65 DGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFR 124
Query: 113 ISDVEKL--AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
S+ E + A + EV N L G Q+R+EI + +M +IL+LDEP + L
Sbjct: 125 RSEREAMEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGL 184
Query: 171 TPIEVKELFKTLRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRG 215
P E +L + L+ E +TV+ I H +K V I+D + V+ +G
Sbjct: 185 NPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQG 230
Score = 84.7 bits (206), Expect = 2e-15
Identities = 66/240 (27%), Positives = 123/240 (50%), Gaps = 15/240 (6%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
IL+V L ++ GL AV GV+ ++ E +++ + G G G+ + L G P G I
Sbjct: 5 ILEVSGLTMRFG-GLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIR 63
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVL-------TNLSRVLHKG- 366
L G+++ LP H+ + G+ V + V L +M VEN+++ TN L K
Sbjct: 64 LDGEEIQGLPGHKIARKGV--VRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTP 121
Query: 367 --RISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEP 424
R S +A E +E+ + + ++ L+ G Q+++ + R ++ P+++++ EP
Sbjct: 122 AFRRSEREAMEYAAHWLEEVNLTEFANRSA-GTLAYGQQRRLEIARCMMTRPRILMLDEP 180
Query: 425 TQGLDIGATEFIRKTLLKLRDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
GL+ T+ ++ + KLR E +LLI D+ ++ +SD + VI +G ++ G E+
Sbjct: 181 AAGLNPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQ 240
>gi|10954918 Hypothetical gene [Agrobacterium tumefaciens]
>gi|6498271|dbj|BAA87723.1| (AB016260) Hypothetical gene
[Agrobacterium tumefaciens]
Length = 261
Score = 116 bits (289), Expect = 4e-25
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 13 YPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNG 72
Y AL V+LK G++ LLG+NGAGKSTL++IL G +P GE++ G++V+ G
Sbjct: 28 YFGATTALSDVSLKAWAGKVTVLLGDNGAGKSTLIKILSGVYRPDAGELRFKGRKVTLYG 87
Query: 73 PWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI-----SDVEKLAKEKMREV 127
P +A GIA YQ + +V N+ L K ++LAKE + +
Sbjct: 88 PNEARALGIATCYQDLAVCDLLSVTRNIVLGQEPTKGFWKFRIYDAKAADRLAKEALDGL 147
Query: 128 GFEV--PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNL 185
G ++ L L G +Q + I +A+ + LILDEPT+ L + + + +
Sbjct: 148 GVKLRGSLRSRAATLSGGQKQSLAIARAMYFGSSCLILDEPTAALAVRQATRVIEHIDRA 207
Query: 186 KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM 235
++ G VI ITH EI D + V RG V+G+ + EV+ + L ++
Sbjct: 208 RQMGNAVILITHNFNHALEIADHLVVFARGRVIGSFERGEVNLQGLTELV 257
>pir||C82266 ABC transporter, ATP-binding protein VC0907 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655363|gb|AAF94069.1| (AE004174) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 344
Score = 116 bits (289), Expect = 4e-25
Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 10/226 (4%)
Query: 4 VEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+E+ + KV+ G + AL+ +NL + +G I G++G +GAGKSTL+R + KPT G+
Sbjct: 2 IEIKSVNKVFYQGDKQIHALKDINLFIPQGTIFGVIGSSGAGKSTLIRCVNMLEKPTSGQ 61
Query: 61 IKVFGKEVS--FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK 118
+ V G +++ N A R I M++QHF L+ + TV EN+ L + G +E
Sbjct: 62 VIVDGVDLTTLSNPQLCAARRNIGMIFQHFNLLSSRTVFENVALPLEL--AGQSQQHIET 119
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
E + VG +L G +QRV I +AL + K+L+ DE TS L P + +
Sbjct: 120 KVTELLALVGLSEKRESYPANLSGGQKQRVAIARALASDPKVLLCDEATSALDPATTQSI 179
Query: 179 FKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVV--GTV 221
+ L+ + ++ +T++ ITH++ VK I V ++ GE+V GTV
Sbjct: 180 LELLKEINRQLNLTILLITHEMDVVKSICHEVAIIGGGELVEKGTV 225
Score = 72.2 bits (174), Expect = 1e-11
Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
I V ++ + D+ + A+K ++ + +G I G+ G G G+ L + + P G++
Sbjct: 4 IKSVNKVFYQGDKQIHALKDINLFIPQGTIFGVIGSSGAGKSTLIRCVNMLEKPTSGQVI 63
Query: 315 LLGKDVTKLPAHE----RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISW 370
+ G D+T L + R G+ + + L+ V ENV L ++
Sbjct: 64 VDGVDLTTLSNPQLCAARRNIGMIF----QHFNLLSSRTVFENVALPL--------ELAG 111
Query: 371 DKANEMTNEVVEKFEVLLSSTKAPI--KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGL 428
+ +V E ++ S K +LSGG +Q+V + R + +PKV++ E T L
Sbjct: 112 QSQQHIETKVTELLALVGLSEKRESYPANLSGGQKQRVAIARALASDPKVLLCDEATSAL 171
Query: 429 DIGATEFIRKTLLKL-RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
D T+ I + L ++ R ILLI+ ++D + + VA+I G+++ G
Sbjct: 172 DPATTQSILELLKEINRQLNLTILLITHEMDVVKSICHEVAIIGGGELVEKG 223
>gb|AAF91339.1|AF249729_1 (AF249729) ATPase OpuCA [Listeria monocytogenes]
Length = 397
Score = 116 bits (288), Expect = 5e-25
Identities = 103/368 (27%), Positives = 176/368 (46%), Gaps = 31/368 (8%)
Query: 9 IVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEV 68
+ K Y G A+ + L +++GE +G +G GK+T M+++ I+PT+G+I + K++
Sbjct: 7 VTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSGCGKTTTMKMINRLIEPTEGKIFINDKDI 66
Query: 69 SFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEK--LAKEKMRE 126
P +R I V Q L+P T+ EN+ L + +K S+ +K AKE ++
Sbjct: 67 MAEDP-VKLRRSIGYVIQQIGLMPHMTIRENIVL----VPKLLKWSEEKKQERAKELIKL 121
Query: 127 VGF-EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNL 185
V E L+ +L G QQR+ +++AL ++++DEP L PI L + +NL
Sbjct: 122 VDLPEEFLDRYPYELSGGQQQRIGVLRALAAEQNLILMDEPFGALDPITRDSLQEEFKNL 181
Query: 186 -KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMVQRDVV 241
KE G T+IF+TH + E ++ DR+ +++ GE+V E+ + +D +
Sbjct: 182 QKELGKTIIFVTHDMDEAIKLADRIVIMKDGEIVQFDTPDEILRNPANSFVEDFIGKDRL 241
Query: 242 MEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELR--------EGEIL-GIAGVQG 292
+E +K T I+ + + D+ L A V E R EG +L G V+
Sbjct: 242 IE-AKPDVTQVAQIMNTNPVSITADKSLQAAITVMKEKRVDTLLVVDEGNVLKGFIDVE- 299
Query: 293 NGQREL--AEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVP----DSRRVGLVL 346
Q +L A + + I EK + + + K G Y+P D R VG+V
Sbjct: 300 --QIDLNRRTATSVMDIIEKNVFYVYEDTLLRDTVQRILKRGYKYIPVVDKDKRLVGIVT 357
Query: 347 DMNVVENV 354
++V+ V
Sbjct: 358 RASLVDIV 365
Score = 75.3 bits (182), Expect = 1e-12
Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+LK E + G AV ++ + +GE + G G G+ + + + P +GKI
Sbjct: 1 MLKFEHVTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSGCGKTTTMKMINRLIEPTEGKIF 60
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
+ KD+ + +S + YV +++GL+ M + EN+VL + ++L + S +K
Sbjct: 61 INDKDIMAEDPVKLRRS-IGYV--IQQIGLMPHMTIRENIVL--VPKLL---KWSEEKKQ 112
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
E E+++ ++ LSGG QQ++ V R + E +I++ EP LD +
Sbjct: 113 ERAKELIKLVDLPEEFLDRYPYELSGGQQQRIGVLRALAAEQNLILMDEPFGALDPITRD 172
Query: 435 FIRKTLLKLRDER-KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+++ L+ E K I+ ++ D+DE ++L+DR+ ++ +G+I+ +E
Sbjct: 173 SLQEEFKNLQKELGKTIIFVTHDMDEAIKLADRIVIMKDGEIVQFDTPDE 222
>gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter ATPase subunit [uncultured
proteobacterium EBAC31A08]
Length = 532
Score = 116 bits (288), Expect = 5e-25
Identities = 128/496 (25%), Positives = 229/496 (45%), Gaps = 40/496 (8%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKS-TLMRILYGEIKPT-----KGEIKVFGKEVSFNG 72
A+ ++ +E+ + L+GE+G+GKS T M IL KP + IK G E+ N
Sbjct: 23 AVDNISFDIEKNQTLALVGESGSGKSVTAMSILQLLQKPQASYSKESSIKFNGDEI-INA 81
Query: 73 PWDAIREG----IAMVYQH--FTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMRE 126
++ + I+M++Q +L P V + ++L + K +++ AK+ M
Sbjct: 82 KYEKLLSLRGNIISMIFQEPMTSLNPYHRVGNQITESILLHSKSSKKDAIDE-AKKLMAL 140
Query: 127 VGF---EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
V E +L G +QRV I AL+ ++LI DEPT+ L ++ +
Sbjct: 141 VEIDDVERRFYAYPHELSGGQRQRVMIAMALVNKPELLIADEPTTALDVTIQAQILDLMS 200
Query: 184 NLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMVQRD 239
LK E G++++FITH L V+E +D V V++ G++V T EV E + ++ +
Sbjct: 201 KLKNELGMSILFITHDLGLVQEFSDNVCVMKNGKIVEQGNTVEVFNNPSHEYTKKLLDAE 260
Query: 240 VVMEISKGKSTPGNTILKVEDLWVK---------DDRGLDAVKGVSFELREGEILGIAGV 290
++ S I+++ DL V AVK SF + + +G+ G
Sbjct: 261 PQPKLDNPVS--DEPIIEINDLNVYYSIPSTNFFKKNTFHAVKNTSFSIYKNTTIGLVGE 318
Query: 291 QGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE--RYKSGLAYVPDSRRVGLVLDM 348
G+G+ L +A+A + + KG I+ G+D+ E K + V L M
Sbjct: 319 SGSGKSTLGKAIANL-VSYKGNIKFEGRDINSNSQKENKELKKNVQIVFQDPYGSLSPRM 377
Query: 349 NVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMV 408
V E +V L +H +++ + +E ++V+ + + + SGG +Q++ +
Sbjct: 378 TVGE-IVGEGLG--VH-FKLTKKERDERIDKVLSDVGIEIVAKNKYPHEFSGGQRQRIAI 433
Query: 409 GREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE-RKGILLISTDLDEILQLSDRV 467
R +I P +++ EPT LD + L ++++E L IS DL I +SD +
Sbjct: 434 ARSLIMNPAFMILDEPTSALDRSIQIQVIDLLKEIQNEYGLTYLFISHDLKVIRSMSDFI 493
Query: 468 AVIYEGKIMSIGKTEE 483
V+ G+I+ G + +
Sbjct: 494 FVMKNGEIVESGPSHK 509
Score = 92.8 bits (227), Expect = 8e-18
Identities = 64/218 (29%), Positives = 125/218 (56%), Gaps = 12/218 (5%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD--A 76
A++ + + + GL+GE+G+GKSTL + + + KG IK G++++ N +
Sbjct: 299 AVKNTSFSIYKNTTIGLVGESGSGKSTLGKAI-ANLVSYKGNIKFEGRDINSNSQKENKE 357
Query: 77 IREGIAMVYQ--HFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFE-VPL 133
+++ + +V+Q + +L P TV E + L ++ + + ++ + + +VG E V
Sbjct: 358 LKKNVQIVFQDPYGSLSPRMTVGE-IVGEGLGVHFKLTKKERDERIDKVLSDVGIEIVAK 416
Query: 134 NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLT---PIEVKELFKTLRNLKERGI 190
N+ + G +QR+ I ++L++N +ILDEPTS L I+V +L K ++N E G+
Sbjct: 417 NKYPHEFSGGQRQRIAIARSLIMNPAFMILDEPTSALDRSIQIQVIDLLKEIQN--EYGL 474
Query: 191 TVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
T +FI+H LK ++ ++D + V++ GE+V + + +V E
Sbjct: 475 TYLFISHDLKVIRSMSDFIFVMKNGEIVESGPSHKVFE 512
>gb|AAK41340.1| ABC transporter, ATP binding subunit [Sulfolobus solfataricus]
Length = 225
Score = 116 bits (287), Expect = 7e-25
Identities = 73/224 (32%), Positives = 122/224 (53%), Gaps = 7/224 (3%)
Query: 1 MTAVEMSGIVKVYPDGV--VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTK 58
M+ + + + K+Y V +ALR +NL ++EGE +LG +G+GKSTL+ IL +P++
Sbjct: 1 MSVIRLENVTKIYEGNVKTIALRDINLSIDEGEFISILGPSGSGKSTLLSILGILDRPSQ 60
Query: 59 GEIKVFGKEV---SFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISD 115
G++ ++ +V S N E I V+Q+F L+ +VL+N+ L +++ GI
Sbjct: 61 GKVYIYEVDVTKLSDNEISKIRNEYIGFVFQNFNLIQRLSVLQNVELPLVA--RGIPKKK 118
Query: 116 VEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
E++A ++ VG + +N+ +L G QQRV I +AL N KI++ DEPT L
Sbjct: 119 REEIAINSLKLVGLDGLINKKPSELSGGQQQRVAIARALAQNPKIILADEPTGNLDSSNA 178
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVG 219
K + + + E T I + +EV T R +R G++VG
Sbjct: 179 KIVMNIFKKINEEFKTTIAVVTHDREVASYTKRKIYIRDGKIVG 222
Score = 82.7 bits (201), Expect = 8e-15
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A++ ++ + EGE + I G G+G+ L L + P +GK+ + DVTKL +E K
Sbjct: 21 ALRDINLSIDEGEFISILGPSGSGKSTLLSILGILDRPSQGKVYIYEVDVTKLSDNEISK 80
Query: 331 SGLAYVPDS-RRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLS 389
Y+ + L+ ++V++NV L ++R + K K E+ ++ +
Sbjct: 81 IRNEYIGFVFQNFNLIQRLSVLQNVELPLVARGIPK-----KKREEIAINSLKLVGLDGL 135
Query: 390 STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
K P LSGG QQ+V + R + + PK+I+ EPT LD + + K+ +E K
Sbjct: 136 INKKP-SELSGGQQQRVAIARALAQNPKIILADEPTGNLDSSNAKIVMNIFKKINEEFKT 194
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIM 476
+ + T E+ + R I +GKI+
Sbjct: 195 TIAVVTHDREVASYTKRKIYIRDGKIV 221
>sp|P72297|OCCP_RHIME OCTOPINE PERMEASE ATP-BINDING PROTEIN P >gi|1519474|gb|AAB07520.1|
(U66830) OccP [Sinorhizobium meliloti]
Length = 262
Score = 116 bits (287), Expect = 7e-25
Identities = 77/253 (30%), Positives = 131/253 (51%), Gaps = 19/253 (7%)
Query: 3 AVEMSGIVKVYPDGVV-ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
AV+++GI K + G++ L GV+L +GE+ +LG +G+GKSTL+R + P G +
Sbjct: 8 AVKLTGIRKNF--GLLEVLHGVSLTANQGEVISILGSSGSGKSTLLRCVNMLEVPNSGSV 65
Query: 62 KVFGKEVSFNG------------PWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINP 109
+ G+E++ N + +RE AMV+Q F L T+L+N+ A L +
Sbjct: 66 SIMGEEIALNHRSGHPSRPKYPKQVNRLRERAAMVFQSFHLWSHLTILQNVMEAPLHVQR 125
Query: 110 GIKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSV 169
+ + A+ + VG N +L G QQR I +AL + ++L+ DEPTS
Sbjct: 126 RDR-KECHAEAEALLERVGIASKRNAFPSELSGGQQQRAAIARALAMRPEVLLFDEPTSA 184
Query: 170 LTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV--- 226
L P V E+ + +RNL G T++ +TH++ ++++ R L +G + +SE+
Sbjct: 185 LDPELVGEVLRVMRNLAAEGRTMLIVTHEMDFARDVSSRSVFLHQGVIAEEGLSSEMFAN 244
Query: 227 SERELARMMVQRD 239
E R ++RD
Sbjct: 245 PRTERFRQFLRRD 257
Score = 74.5 bits (180), Expect = 2e-12
Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDV-----TKL 323
L+ + GVS +GE++ I G G+G+ L + + +P G + ++G+++ +
Sbjct: 21 LEVLHGVSLTANQGEVISILGSSGSGKSTLLRCVNMLEVPNSGSVSIMGEEIALNHRSGH 80
Query: 324 PAHERYKSGLAYVPDSRRVGLVLD-------MNVVENVVLTNLSRVLHKGRISWDKANEM 376
P+ +Y + + + R +V + +++NV + LH R + +
Sbjct: 81 PSRPKYPKQVNRLRE--RAAMVFQSFHLWSHLTILQNV----MEAPLHVQRRDRKECHAE 134
Query: 377 TNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFI 436
++E+ + P LSGG QQ+ + R + P+V++ EPT LD +
Sbjct: 135 AEALLERVGIASKRNAFP-SELSGGQQQRAAIARALAMRPEVLLFDEPTSALDPELVGEV 193
Query: 437 RKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + L E + +L+++ ++D +S R +++G I G + E
Sbjct: 194 LRVMRNLAAEGRTMLIVTHEMDFARDVSSRSVFLHQGVIAEEGLSSE 240
>gb|AAC45666.1| (AF010307) AbcC [Helicobacter pylori]
Length = 327
Score = 116 bits (287), Expect = 7e-25
Identities = 75/226 (33%), Positives = 129/226 (56%), Gaps = 5/226 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
VE+ I K+Y +G AL+GVNL++++G+I G++G +GAGKSTL+R++ +P+ GE+ V
Sbjct: 3 VELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLV 62
Query: 64 FGKEVSFNGPWD--AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
G + P + R+ I M++QHF L+ V EN+ A L I K + ++
Sbjct: 63 NGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKDVFENVAFA-LEIARWEK-TKIKSRVH 120
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + VG E ++ + L G ++RV I ++L +L+ DE TS L +
Sbjct: 121 ELLELVGLEDKVHFYPKQLSGGQKERVAIARSLANCPDLLLCDEATSALDSKTTHSILTL 180
Query: 182 LRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
L + K+ ++V+FITH+++ VKE+ +++ V+ GE+V E+
Sbjct: 181 LSGIQKKLDLSVVFITHQIEVVKELCNQMCVISSGEIVERGSVEEI 226
Score = 78.8 bits (191), Expect = 1e-13
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 13/222 (5%)
Query: 266 DRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPA 325
+ G A+KGV+ EL++G+ILG+ G G G+ L + + P G++ + G ++ KL
Sbjct: 13 ENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLKLKP 72
Query: 326 HERYKSGLAYVPDSRRVGLVLDMNVVENVVLT-NLSRVLHKGRISWDKANEMTNEVVEKF 384
E K+ + L+ +V ENV ++R W+K ++ + V E
Sbjct: 73 KELQKARQKIGMIFQHFNLLSAKDVFENVAFALEIAR--------WEK-TKIKSRVHELL 123
Query: 385 EVLLSSTKAPI--KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
E++ K K LSGG +++V + R + P +++ E T LD T I L
Sbjct: 124 ELVGLEDKVHFYPKQLSGGQKERVAIARSLANCPDLLLCDEATSALDSKTTHSILTLLSG 183
Query: 443 LRDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
++ + ++ I+ ++ + +L +++ VI G+I+ G EE
Sbjct: 184 IQKKLDLSVVFITHQIEVVKELCNQMCVISSGEIVERGSVEE 225
>pir||G69633 glutamine transport protein glnQ - Bacillus subtilis
>gi|2635188|emb|CAB14684.1| (Z99117) glutamine ABC
transporter (ATP-binding protein) [Bacillus subtilis]
>gi|2635206|emb|CAB14701.1| (Z99118) glutamine ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 242
Score = 116 bits (287), Expect = 7e-25
Identities = 71/242 (29%), Positives = 131/242 (53%), Gaps = 12/242 (4%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ + K Y D V L+ +NL++E+GE+ ++G +G+GKSTL+R + +G + V
Sbjct: 2 ITFQNVNKHYGDFHV-LKQINLQIEKGEVVVIIGPSGSGKSTLLRCINRLESINEGVLTV 60
Query: 64 FGKEVSFNGP-WDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSI---NPGIKISDVEKL 119
G ++ + +R+ I MV+QHF L P TVL+N+ LA + + +P ++
Sbjct: 61 NGTAINDRKTDINQVRQNIGMVFQHFHLYPHKTVLQNIMLAPVKVLRQSP----EQAKET 116
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
A+ + +VG + L G QQRV I + L + ++++ DEPTS L P + E+
Sbjct: 117 ARYYLEKVGIPDKADAYPSQLSGGQQQRVAIARGLAMKPEVMLFDEPTSALDPEMIGEVL 176
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMV 236
++ L + G+T++ +TH++ KE+ DR+ + G+++ +E + E AR+ +
Sbjct: 177 DVMKTLAKEGMTMVVVTHEMGFAKEVADRIVFIDEGKILEEAVPAEFYANPKEERARLFL 236
Query: 237 QR 238
R
Sbjct: 237 SR 238
>emb|CAC05961.1| (AL391763) ATP-binding protein [Streptomyces coelicolor]
Length = 253
Score = 116 bits (287), Expect = 7e-25
Identities = 73/230 (31%), Positives = 122/230 (52%), Gaps = 14/230 (6%)
Query: 1 MTA-VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
MTA V+ G+ K + V L+G++L+V++GE+ L+G +G+GKST +R + K G
Sbjct: 1 MTAMVKAEGVHKSF-GAVEVLKGIDLEVKQGEVFCLIGPSGSGKSTFLRCINHLEKINAG 59
Query: 60 EIKVFGKEVSFNGPWDAI-----------REGIAMVYQHFTLVPTFTVLENLYLAMLSIN 108
+ V G+ V + D + R I MV+Q F L P T +EN+ A + +
Sbjct: 60 RLYVDGELVGYRQKGDKLYELKDSEVALKRRDIGMVFQRFNLFPHMTAVENVMEAPVQVK 119
Query: 109 PGIKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTS 168
G+ + + A+ + VG L G QQRV I +AL ++ K+++ DEPTS
Sbjct: 120 -GMSRAQARERARGLLERVGLADKAGNYPSQLSGGQQQRVAIARALAMDPKLMLFDEPTS 178
Query: 169 VLTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
L P V ++ +R+L E G+T++ +TH++ +E+ D + + G VV
Sbjct: 179 ALDPELVGDVLDVMRDLAESGMTMVVVTHEMGFAREVGDSLVFMDNGVVV 228
>pir||T31682 bcrA protein - Bacillus licheniformis >gi|4464278|gb|AAD21213.1|
(AF007865) BcrA [Bacillus licheniformis]
Length = 306
Score = 115 bits (286), Expect = 9e-25
Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 9/229 (3%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T ++ + + K+Y ++ +N+ V++G+I+G LG NGAGK+T +R+L G IKPT G+I
Sbjct: 3 TIIKTTDLTKMY-GSQKSVDHLNINVKQGDIYGFLGRNGAGKTTTIRMLLGLIKPTSGQI 61
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
++FG E F + +R I + + T ENL IN I +
Sbjct: 62 EIFG-ENFFKNKKEILRR-IGSIVEVPGFYANLTARENLL-----INAKIIGIHKKNAID 114
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
E + VG + ++V +G++QR+ I +AL+ ++ ILDEPT+ L PI +KE+ +
Sbjct: 115 EVLEIVGLQHETKKLVGKFSLGMKQRLGIARALLHYPELSILDEPTNGLDPIGIKEMRRL 174
Query: 182 LRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
+ +L KER IT+ +H L E++++ D V ++ G+++ + + +R
Sbjct: 175 IHSLAKERNITIFISSHILSEIEQLVDHVGIIHEGKLLEEIPFDHLKKR 223
Score = 77.3 bits (187), Expect = 4e-13
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 253 NTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGK 312
+TI+K DL K +V ++ +++G+I G G G G+ L G+ P G+
Sbjct: 2 STIIKTTDL-TKMYGSQKSVDHLNINVKQGDIYGFLGRNGAGKTTTIRMLLGLIKPTSGQ 60
Query: 313 IELLGKDVTKLPAHERYKSG-LAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWD 371
IE+ G++ K + G + VP G ++ EN+++ +HK
Sbjct: 61 IEIFGENFFKNKKEILRRIGSIVEVP-----GFYANLTARENLLINAKIIGIHK------ 109
Query: 372 KANEMTNEVVEKFEV--LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD 429
N + E E+ L TK + S G +Q++ + R ++ P++ ++ EPT GLD
Sbjct: 110 -----KNAIDEVLEIVGLQHETKKLVGKFSLGMKQRLGIARALLHYPELSILDEPTNGLD 164
Query: 430 IGATEFIRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIM 476
+ +R+ + L ER + IS+ L EI QL D V +I+EGK++
Sbjct: 165 PIGIKEMRRLIHSLAKERNITIFISSHILSEIEQLVDHVGIIHEGKLL 212
>pir||D75444 branched-chain amino acid ABC transporter, ATP-binding protein -
Deinococcus radiodurans (strain R1)
>gi|6458766|gb|AAF10610.1|AE001955_2 (AE001955)
branched-chain amino acid ABC transporter, ATP-binding
protein [Deinococcus radiodurans]
Length = 252
Score = 115 bits (286), Expect = 9e-25
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 15/231 (6%)
Query: 10 VKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVS 69
V Y + AL+G+N+ V EGEI L+G NGAGK+T +R + G +KP G + G+ V+
Sbjct: 23 VHSYYGQIEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKPKTGSVTYLGQNVT 82
Query: 70 FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGF 129
I G+A V + + P TV ENL + ++N +K A E GF
Sbjct: 83 GVPSHQLIGRGMAHVPEGRRIFPQMTVRENLEVGAYTVN--------DKAAINARIEEGF 134
Query: 130 EV------PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
E+ +++ + G QQ + I +ALM+ K+L+LDEP+ L+P+ V+ +F +
Sbjct: 135 ELFPRLRERESQLGGTMSGGEQQMLAIARALMIAPKVLLLDEPSMGLSPLFVENIFSIIE 194
Query: 184 NL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
L KERG T++ + I DR VL+ GE+ + +++ E R
Sbjct: 195 RLNKERGTTILLVEQNASMALAIADRAYVLQTGEIKLSGNAQDIARDETVR 245
Score = 95.6 bits (234), Expect = 1e-18
Identities = 65/221 (29%), Positives = 111/221 (49%), Gaps = 9/221 (4%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
++A+KG++ + EGEI+ + G G G+ ++G+ P+ G + LG++VT +P+H+
Sbjct: 30 IEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKPKTGSVTYLGQNVTGVPSHQL 89
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
G+A+VP+ RR+ M V EN+ + V K I N E E F L
Sbjct: 90 IGRGMAHVPEGRRI--FPQMTVRENLEV-GAYTVNDKAAI-----NARIEEGFELFPRLR 141
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER- 447
+SGG QQ + + R ++ PKV+++ EP+ GL E I + +L ER
Sbjct: 142 ERESQLGGTMSGGEQQMLAIARALMIAPKVLLLDEPSMGLSPLFVENIFSIIERLNKERG 201
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEK 488
ILL+ + L ++DR V+ G+I G ++ ++
Sbjct: 202 TTILLVEQNASMALAIADRAYVLQTGEIKLSGNAQDIARDE 242
>sp|P32010|DRRA_STRPE DAUNORUBICIN RESISTANCE ATP-BINDING PROTEIN DRRA
>gi|625935|pir||S27707 daunorubicin resistance protein -
Streptomyces peucetius >gi|153230|gb|AAA74717.1|
(M73758) daunorubicin resistance protein [Streptomyces
peucetius]
Length = 330
Score = 115 bits (285), Expect = 1e-24
Identities = 71/224 (31%), Positives = 124/224 (54%), Gaps = 5/224 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E SG+VKVY +G A+ G++L V G ++G+LG NGAGKST +R+L ++P G +
Sbjct: 8 AIETSGLVKVY-NGTRAVDGLDLNVPAGLVYGILGPNGAGKSTTIRMLATLLRPDGGTAR 66
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
VFG +V+ D +R I++ Q+ ++ T ENL M+ G + + A E
Sbjct: 67 VFGHDVTSEP--DTVRRRISVTGQYASVDEGLTGTENL--VMMGRLQGYSWARARERAAE 122
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ G + +++ G+++R++I ++++ +L LDEPT+ L P +++ +
Sbjct: 123 LIDGFGLGDARDRLLKTYSGGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDIV 182
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
R L + G TV+ T L E ++ DR+ V+ G V+ T E+
Sbjct: 183 RALVDAGTTVLLTTQYLDEADQLADRIAVIDHGRVIAEGTTGEL 226
Score = 84.3 bits (205), Expect = 3e-15
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 263 VKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTK 322
VK G AV G+ + G + GI G G G+ LA + P+ G + G DVT
Sbjct: 15 VKVYNGTRAVDGLDLNVPAGLVYGILGPNGAGKSTTIRMLATLLRPDGGTARVFGHDVTS 74
Query: 323 LPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRI---SWDKANEMTNE 379
P R RR+ + V+ LT ++ GR+ SW +A E E
Sbjct: 75 EPDTVR-----------RRISVTGQYASVDEG-LTGTENLVMMGRLQGYSWARARERAAE 122
Query: 380 VVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKT 439
+++ F L + +K SGG ++++ + I+ P ++ + EPT GLD + +
Sbjct: 123 LIDGFG-LGDARDRLLKTYSGGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDI 181
Query: 440 LLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ L D +LL + LDE QL+DR+AVI G++++ G T E
Sbjct: 182 VRALVDAGTTVLLTTQYLDEADQLADRIAVIDHGRVIAEGTTGE 225
>sp|Q52666|BZTD_RHOCA GLUTAMATE/GLUTAMINE/ASPARTATE/ASPARAGINE TRANSPORT ATP-BINDING
PROTEIN BZTD >gi|7442514|pir||S77604
glutamate/glutamine/aspartate/asparagine transport
protein - Rhodobacter capsulatus
>gi|1655715|gb|AAB17889.1| (U37407) BztD [Rhodobacter
capsulatus]
Length = 263
Score = 115 bits (285), Expect = 1e-24
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 3/217 (1%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+++S + K Y V LR +NL V GE + G +G+GKST++R + + G+I
Sbjct: 22 AIQISQMNKWYGQFHV-LRDINLTVHRGERIVIAGPSGSGKSTMIRCINRLEEHQSGKII 80
Query: 63 VFGKEVSFN-GPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
V G E++ + D +R + MV+QHF L P T+LENL LA + + K + E+ A
Sbjct: 81 VDGIELTSDLKNIDKVRSEVGMVFQHFNLFPHLTILENLTLAPIWVRKVPK-REAEETAM 139
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ +V + L G QQRV I ++L + KI++ DEPTS L P +KE+ T
Sbjct: 140 YYLEKVKIPEQAQKYPGQLSGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMIKEVLDT 199
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ L E G+T++ +TH++ + + +RV + G++V
Sbjct: 200 MIQLAEEGMTMLCVTHEMGFAQAVANRVIFMADGQIV 236
>gi|11498586 osmoprotection protein (proV) [Archaeoglobus fulgidus]
>gi|7428829|pir||E69372 osmoprotection protein (proV)
homolog - Archaeoglobus fulgidus
>gi|2649615|gb|AAB90260.1| (AE001036) osmoprotection
protein (proV) [Archaeoglobus fulgidus]
Length = 361
Score = 115 bits (285), Expect = 1e-24
Identities = 102/360 (28%), Positives = 178/360 (49%), Gaps = 48/360 (13%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAI- 77
A+R +NL VE GE+ L+G +G+GK+T +R++ ++P +G + + G+++S DA+
Sbjct: 23 AVRELNLTVEGGELLALIGPSGSGKTTTLRMINRLVEPDEGRVLINGQDIS---EIDAVR 79
Query: 78 -REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEI 136
R I V Q L P V EN+ L I +E +EK+R+ ++E+
Sbjct: 80 LRRNIGYVIQQIGLFPHMKVWENIGL----------IPKLEGWEEEKIRQ-----RVDEL 124
Query: 137 VE--DLPV------------GIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
++ DLP+ G QQRV + +AL LN +L++DEP L PI K+L +
Sbjct: 125 LKLVDLPIEFAERYPWQLSGGQQQRVGLARALALNPPLLLMDEPFGALDPILRKQLQEEF 184
Query: 183 RNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV 241
+KE G T++F+TH ++E + DR+ ++ G +V +V E E + + V
Sbjct: 185 ARIKEELGKTIVFVTHDVEEAFRLGDRIAIMNEGRLV------QVGEPEELIINPANEFV 238
Query: 242 MEISKGKSTPGN-TILKVEDLWVKDDRGLDAVKGVSFELREGEILGI-AGVQGNGQRELA 299
+I+ + + LKV+D + ++ L V+ L+E G+ G +G+
Sbjct: 239 EDITGARRKFRHLDTLKVKDFMISAEKYLIQNMEVAEALKEFRKRGVEVGFLDSGRAVFL 298
Query: 300 EALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRR-VGLVLDMNVVENVVLTN 358
+ +AG +GKI ++V + S L + +S VG+V + V V+L+N
Sbjct: 299 KDIAG----REGKISEYAREVKSFAPSDSLVSALLELRESGEFVGVVEEKGEVAGVLLSN 354
Score = 86.2 bits (210), Expect = 7e-16
Identities = 52/217 (23%), Positives = 119/217 (53%), Gaps = 9/217 (4%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV+ ++ + GE+L + G G+G+ + + P++G++ + G+D++++ A R +
Sbjct: 23 AVRELNLTVEGGELLALIGPSGSGKTTTLRMINRLVEPDEGRVLINGQDISEIDA-VRLR 81
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+ YV +++GL M V EN+ L + +K + +E+++ ++ +
Sbjct: 82 RNIGYV--IQQIGLFPHMKVWENIGLIPKLEGWEE-----EKIRQRVDELLKLVDLPIEF 134
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER-KG 449
+ LSGG QQ+V + R + P ++++ EP LD + +++ ++++E K
Sbjct: 135 AERYPWQLSGGQQQRVGLARALALNPPLLLMDEPFGALDPILRKQLQEEFARIKEELGKT 194
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTL 486
I+ ++ D++E +L DR+A++ EG+++ +G+ EE +
Sbjct: 195 IVFVTHDVEEAFRLGDRIAIMNEGRLVQVGEPEELII 231
>pir||E75108 daunorubicin resistance ATP-binding protein (drra-1) PAB1923 -
Pyrococcus abyssi (strain Orsay)
>gi|5458093|emb|CAB49582.1| (AJ248285) daunorubicin
resistance ATP-binding protein (drrA-1) [Pyrococcus
abyssi]
Length = 328
Score = 115 bits (285), Expect = 1e-24
Identities = 72/229 (31%), Positives = 132/229 (57%), Gaps = 6/229 (2%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M A+E+ +VK Y D A++G++ KV++GEI LG NGAGK+T + +L +KPT G+
Sbjct: 1 MYAIEVENLVKKYGD-FTAVKGISFKVKKGEIFAFLGPNGAGKTTTVHVLTTLLKPTSGK 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
V G +V P + +R+ I +V+Q +L T EN+Y+ + G+K ++++
Sbjct: 60 AIVAGHDV-VKEPQE-VRKKIGIVFQDPSLDRELTAYENMYIHGMIY--GLKGRELKEKI 115
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+E ++ V + V+ G+Q+R+EI +AL+ +IL LDEPT L P +++
Sbjct: 116 EELLKFVELWRFKDRPVKYFSGGMQRRLEIARALIHEPEILFLDEPTIGLDPQTRAHIWE 175
Query: 181 TLRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+R +K E +T+ TH + E +++ DR+ ++ G+++ + E+ +
Sbjct: 176 YIRTMKEEHEMTIFLTTHYMDEAEQLADRIAIIDHGKIIAEGTSEELKK 224
Score = 112 bits (278), Expect = 8e-24
Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 14/235 (5%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
++VE+L VK AVKG+SF++++GEI G G G+ L + P GK +
Sbjct: 4 IEVENL-VKKYGDFTAVKGISFKVKKGEIFAFLGPNGAGKTTTVHVLTTLLKPTSGKAIV 62
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
G DV K P R K G+ + S L ++ EN+ + + L KGR +K E
Sbjct: 63 AGHDVVKEPQEVRKKIGIVFQDPS----LDRELTAYENMYIHGMIYGL-KGRELKEKIEE 117
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
+ KF L P+K+ SGG Q+++ + R +I EP+++ + EPT GLD
Sbjct: 118 LL-----KFVELWRFKDRPVKYFSGGMQRRLEIARALIHEPEILFLDEPTIGLDPQTRAH 172
Query: 436 IRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
I + + +++E + + ++T +DE QL+DR+A+I GKI++ G +EE L+KL
Sbjct: 173 IWEYIRTMKEEHEMTIFLTTHYMDEAEQLADRIAIIDHGKIIAEGTSEE--LKKL 225
>dbj|BAA83955.1| (AB024563) YFIL [Bacillus halodurans]
Length = 310
Score = 115 bits (285), Expect = 1e-24
Identities = 71/224 (31%), Positives = 128/224 (56%), Gaps = 6/224 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+ + K Y + V ++G+N+ +E+GE+ GLLG NGAGKST + ++ I+PT G++ +
Sbjct: 2 IEVIDLSKTYRNRQV-VKGINMFIEKGEMVGLLGPNGAGKSTTISMISSLIQPTSGDVLI 60
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G + AIR + +V Q + T EN LA G+K +++ +
Sbjct: 61 KGGSIHKRS--KAIRSILGVVPQEIAVYHDLTAREN--LAFFGKIYGLKGEELKHRMEST 116
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
++ VG E N+ V G+++R+ I AL+ +++I+DEPT + P + +T++
Sbjct: 117 LQLVGLEERQNDRVHTFSGGMKRRLNIAVALLHEPELIIMDEPTVGIDPQSRSHILETVK 176
Query: 184 NL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
L +ER +TVI+ +H ++EV+ + DR+ ++ RGEV+ + EV
Sbjct: 177 TLNQEREMTVIYTSHYMEEVEYLCDRLYIMDRGEVIASGTKDEV 220
Score = 72.2 bits (174), Expect = 1e-11
Identities = 54/232 (23%), Positives = 114/232 (48%), Gaps = 16/232 (6%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+++V DL K R VKG++ + +GE++G+ G G G+ ++ + P G +
Sbjct: 1 MIEVIDL-SKTYRNRQVVKGINMFIEKGEMVGLLGPNGAGKSTTISMISSLIQPTSGDVL 59
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
+ G + K + +S L VP + + + D+ EN+ G+I K
Sbjct: 60 IKGGSIHK--RSKAIRSILGVVP--QEIAVYHDLTARENLAFF--------GKIYGLKGE 107
Query: 375 EMTNEVVEKFEV--LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGA 432
E+ + + ++ L + SGG ++++ + ++ EP++I++ EPT G+D +
Sbjct: 108 ELKHRMESTLQLVGLEERQNDRVHTFSGGMKRRLNIAVALLHEPELIIMDEPTVGIDPQS 167
Query: 433 TEFIRKTLLKLRDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
I +T+ L ER+ ++ S ++E+ L DR+ ++ G++++ G +E
Sbjct: 168 RSHILETVKTLNQEREMTVIYTSHYMEEVEYLCDRLYIMDRGEVIASGTKDE 219
>pir||F81348 ABC transport system ATP-binding protein Cj0774c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968220|emb|CAB73039.1| (AL139076) ABC transport
system ATP-binding protein [Campylobacter jejuni]
Length = 336
Score = 115 bits (285), Expect = 1e-24
Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 10 VKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEV- 68
+K Y + + V+L++++GEI+ ++G +GAGKSTL+R + G +G +KVF +E+
Sbjct: 7 LKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLLRCINGLENYQEGSLKVFDQEIK 66
Query: 69 ----SFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKM 124
+ +R+ I M++Q+F L+ V EN+ + + + K + KE M
Sbjct: 67 DLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENVAMPLRTHYTQCKF-HAKLFNKEYM 125
Query: 125 REVGFEVPLNEIVE-------------DLPVGIQQRVEIIKALMLNAKILILDEPTSVLT 171
E +N ++E +L G +QRV I +AL LN KIL+ DE TS L
Sbjct: 126 SEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQRVAIARALALNPKILLSDEATSALD 185
Query: 172 PIEVKELFKTLRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
P K + + + + E GITV+ +TH++ VK+I + +L G+++G+ E+ R
Sbjct: 186 PNTTKNILELISKINAEFGITVVLVTHEMDVVKDIAQKALLLEHGQIIGSGAIDELFLRP 245
Query: 231 LARM 234
A+M
Sbjct: 246 NAKM 249
Score = 71.4 bits (172), Expect = 2e-11
Identities = 53/232 (22%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE---- 327
+ VS E+++GEI I G G G+ L + G+ ++G +++ +++ L +
Sbjct: 17 INDVSLEIKKGEIYAIVGHSGAGKSTLLRCINGLENYQEGSLKVFDQEIKDLSQKKSKEL 76
Query: 328 ---RYKSGLAYVPDSRRVGLVLDMNVVENVVL---TNLSRVLHKGRISWDKANEMTNEVV 381
R G+ + + L+ NV ENV + T+ ++ ++ ++K E+
Sbjct: 77 RMLRKDIGMIF----QNFALMERKNVFENVAMPLRTHYTQCKFHAKL-FNKEYMSEKEIA 131
Query: 382 EKFEVLLS------STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
+K LL K+ + LSGG +Q+V + R + PK+++ E T LD T+
Sbjct: 132 QKVNSLLEIVGLDHKNKSYPRELSGGQKQRVAIARALALNPKILLSDEATSALDPNTTKN 191
Query: 436 IRKTLLKLRDE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTL 486
I + + K+ E ++L++ ++D + ++ + ++ G+I+ G +E L
Sbjct: 192 ILELISKINAEFGITVVLVTHEMDVVKDIAQKALLLEHGQIIGSGAIDELFL 243
>dbj|BAB04773.1| (AP001510) transposase (08)/ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 901
Score = 115 bits (285), Expect = 1e-24
Identities = 72/224 (32%), Positives = 129/224 (57%), Gaps = 6/224 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+ + K Y + V ++G+N+ +E+GE+ GLLG NGAGKST + ++ I+PT G++ +
Sbjct: 593 IEVIDLSKTYRNRQV-VKGINMFIEKGEMVGLLGPNGAGKSTTISMISSLIQPTSGDVLI 651
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G S + AIR + +V Q + T EN LA G+K +++ +
Sbjct: 652 KGG--SIHKQSKAIRSILGVVPQEIAVYHDLTAREN--LAFFGKIYGLKGEELKHRMEST 707
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
++ VG E N+ V G+++R+ I AL+ +++I+DEPT + P + +T++
Sbjct: 708 LQLVGLEERQNDRVHTFSGGMKRRLNIAVALLHEPELIIMDEPTVGIDPQSRSHILETVK 767
Query: 184 NL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
L +ER +TVI+ +H ++EV+ + DR+ ++ RGEV+ + EV
Sbjct: 768 TLNQEREMTVIYTSHYMEEVEYLCDRLYIMDRGEVIASGTKDEV 811
Score = 74.5 bits (180), Expect = 2e-12
Identities = 55/235 (23%), Positives = 115/235 (48%), Gaps = 16/235 (6%)
Query: 252 GNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKG 311
G +++V DL K R VKG++ + +GE++G+ G G G+ ++ + P G
Sbjct: 589 GENMIEVIDL-SKTYRNRQVVKGINMFIEKGEMVGLLGPNGAGKSTTISMISSLIQPTSG 647
Query: 312 KIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWD 371
+ + G + K + +S L VP + + + D+ EN+ G+I
Sbjct: 648 DVLIKGGSIHK--QSKAIRSILGVVP--QEIAVYHDLTARENLAFF--------GKIYGL 695
Query: 372 KANEMTNEVVEKFEV--LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD 429
K E+ + + ++ L + SGG ++++ + ++ EP++I++ EPT G+D
Sbjct: 696 KGEELKHRMESTLQLVGLEERQNDRVHTFSGGMKRRLNIAVALLHEPELIIMDEPTVGID 755
Query: 430 IGATEFIRKTLLKLRDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ I +T+ L ER+ ++ S ++E+ L DR+ ++ G++++ G +E
Sbjct: 756 PQSRSHILETVKTLNQEREMTVIYTSHYMEEVEYLCDRLYIMDRGEVIASGTKDE 810
>pir||D72485 probable high-affinity branched-chain amino acid transport
ATP-binding protein APE2524 - Aeropyrum pernix (strain
K1) >gi|5106229|dbj|BAA81540.1| (AP000064) 242aa long
hypothetical high-affinity branched-chain amino acid
transport ATP-binding protein [Aeropyrum pernix]
Length = 242
Score = 115 bits (284), Expect = 2e-24
Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 4/217 (1%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G+ AL+GV+ V GE GL+G NGAGK+TL I+ G P +G + G +++ +
Sbjct: 19 GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYR 78
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYL-AMLSINPGIKISDVEKLAKEKMREVGFEVPLN 134
R GIA +Q + TVL N+ + A+L N I + + A E + VG +
Sbjct: 79 RSRAGIARTFQIVRPLANLTVLNNVIVGALLRTND---IREARERAMEAIDMVGLAGKED 135
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIF 194
+ +DL + ++R+E+ +AL ++L+LDE + L P EV +L TL + +RGIT+I
Sbjct: 136 ILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITIIM 195
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSEREL 231
+ H ++ V +RV VL GE + EV+ +L
Sbjct: 196 VEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKL 232
Score = 87.4 bits (213), Expect = 3e-16
Identities = 61/237 (25%), Positives = 125/237 (52%), Gaps = 13/237 (5%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
IL V D++ K G++A+KGVSF +R GE +G+ G G G+ L ++GI +P++G++
Sbjct: 7 ILDVRDVY-KRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVI 65
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
G D+T PA+ R ++G+A + V + ++ V+ NV++ L R +
Sbjct: 66 YKGVDITGWPAYRRSRAGIART--FQIVRPLANLTVLNNVIVGALLRT--------NDIR 115
Query: 375 EMTNEVVEKFEVLLSSTKAPI--KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGA 432
E +E +++ + K I K L+ ++++ + R + +P+++++ E GL
Sbjct: 116 EARERAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPRE 175
Query: 433 TEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
+ + TLL++ I+++ + ++ ++RV V++ G+ ++ G E KL
Sbjct: 176 VDDLVYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKL 232
>pir||G75124 abc-transporter ATP-binding protein PAB0545 - Pyrococcus abyssi
(strain Orsay) >gi|5458223|emb|CAB49712.1| (AJ248285)
ABC-TRANSPORTER ATP-BINDING PROTEIN [Pyrococcus abyssi]
Length = 329
Score = 115 bits (284), Expect = 2e-24
Identities = 72/218 (33%), Positives = 123/218 (56%), Gaps = 9/218 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M VE+ G+ K +P LR V+L+V++GE+ +LG +G GK+T +RI+ G +P KG
Sbjct: 1 MVRVELRGVEKKFPG--FKLR-VDLEVKDGELISILGPSGCGKTTTLRIIAGLERPDKGN 57
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+ G++V+F P+ I V+Q + L P V +N+ L + + ++E+
Sbjct: 58 VLFDGRDVTFLPPYS---RNIGFVFQDYALFPHMNVFKNVAFG-LEVRK-LPRKEIERKV 112
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+E + VG + N + E L G QQRV + +AL++ ++L+LDEP S L + L
Sbjct: 113 REVLELVGLKGFENRMPEQLSGGQQQRVALARALVIEPEVLLLDEPLSNLDAKVRESLRM 172
Query: 181 TLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
++ + KE GIT +++TH +E I+DR+ V+ G +
Sbjct: 173 EIKRIQKELGITTMYVTHDQEEAMAISDRIAVMNFGRI 210
Score = 94.4 bits (231), Expect = 3e-18
Identities = 67/218 (30%), Positives = 109/218 (49%), Gaps = 28/218 (12%)
Query: 275 VSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLA 334
V E+++GE++ I G G G+ +AG+ P+KG + G+DVT LP
Sbjct: 20 VDLEVKDGELISILGPSGCGKTTTLRIIAGLERPDKGNVLFDGRDVTFLP---------- 69
Query: 335 YVPDSRRVGLVLD-------MNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
P SR +G V MNV +NV R L + I EV+E +
Sbjct: 70 --PYSRNIGFVFQDYALFPHMNVFKNVAFGLEVRKLPRKEI-----ERKVREVLELVGLK 122
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+ P + LSGG QQ+V + R ++ EP+V+++ EP LD E +R + +++ E
Sbjct: 123 GFENRMP-EQLSGGQQQRVALARALVIEPEVLLLDEPLSNLDAKVRESLRMEIKRIQKE- 180
Query: 448 KGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
GI + ++ D +E + +SDR+AV+ G+I +G+ E
Sbjct: 181 LGITTMYVTHDQEEAMAISDRIAVMNFGRIEQVGRPLE 218
>pir||T35756 probable branched chain amino acid transport ATP-binding protein -
Streptomyces coelicolor >gi|5689904|emb|CAB52067.1|
(AL109732) putative branched chain amino acid transport
ATP-binding protein [Streptomyces coelicolor A3(2)]
Length = 309
Score = 115 bits (284), Expect = 2e-24
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 16/232 (6%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G+ A+ GV+L V GEI GL+G NGAGK+T L G PT+GE++ G+ + +
Sbjct: 33 GLTAVNGVDLTVNSGEIVGLIGPNGAGKTTFFNCLTGLYIPTEGEVRYKGQVLPAKS-FK 91
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAM---------LSINPGIKISDVEKLAKEKMRE 126
G+A +Q+ L TVLEN+ + ++ G EK ++E+ E
Sbjct: 92 VTAAGVARTFQNIRLFANMTVLENVLVGRHTRTKEGFWSAVLRGPGFHRAEKASRERALE 151
Query: 127 ----VGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
VG + + +LP G Q+++EI +AL +L+LDEPT+ + P E + + +
Sbjct: 152 LLEFVGLAPKADHLARNLPYGEQRKLEIARALASEPGLLLLDEPTAGMNPQETRATEELV 211
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGE--VVGTVKTSEVSERELA 232
++++GI V+ I H ++ + + DRV VL +GE V G T + ER +A
Sbjct: 212 FAIRDQGIAVLVIEHDMRFIFNLCDRVAVLVQGEKLVEGDSATVQGDERVVA 263
Score = 92.1 bits (225), Expect = 1e-17
Identities = 67/242 (27%), Positives = 119/242 (48%), Gaps = 15/242 (6%)
Query: 243 EISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEAL 302
+ + G PG TIL + ++ GL AV GV + GEI+G+ G G G+ L
Sbjct: 9 DTAPGAPAPGTTILDARGVTMRFG-GLTAVNGVDLTVNSGEIVGLIGPNGAGKTTFFNCL 67
Query: 303 AGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRV 362
G+ IP +G++ G+ LPA + + + L +M V+ENV++ +R
Sbjct: 68 TGLYIPTEGEVRYKGQ---VLPAKSFKVTAAGVARTFQNIRLFANMTVLENVLVGRHTRT 124
Query: 363 LH-------KGRISWDKANEMTNE-VVEKFEVLLSSTKAP--IKHLSGGNQQKVMVGREI 412
+G + +A + + E +E E + + KA ++L G Q+K+ + R +
Sbjct: 125 KEGFWSAVLRGP-GFHRAEKASRERALELLEFVGLAPKADHLARNLPYGEQRKLEIARAL 183
Query: 413 IREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYE 472
EP ++++ EPT G++ T + + +RD+ +L+I D+ I L DRVAV+ +
Sbjct: 184 ASEPGLLLLDEPTAGMNPQETRATEELVFAIRDQGIAVLVIEHDMRFIFNLCDRVAVLVQ 243
Query: 473 GK 474
G+
Sbjct: 244 GE 245
>gb|AAG34388.1|AF197468_4 (AF197468) ATP/GTP binding protein; NosF [Pseudomonas fluorescens]
Length = 305
Score = 115 bits (284), Expect = 2e-24
Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M VE+ G+ + Y D V LRG++L + +GE+ GL G NGAGK+T M+++ G ++ ++GE
Sbjct: 1 MNVVEIEGVSQRYGD-VAVLRGLDLTLAQGEVLGLFGHNGAGKTTTMKLILGLLRASEGE 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-YLAMLSINPGIKISDVEKL 119
++VFG+ S ++R+ + + ++ P + LE L + A L G VE+L
Sbjct: 60 VRVFGRAPSD----PSVRQMLGYLPENVMFYPQLSGLETLRHFARLK---GAAPEQVERL 112
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+ EVG V G++QR+ + +AL+ ++L+LDEPT L PI ++L+
Sbjct: 113 ----LEEVGLAGAARRRVRTYSKGMRQRLGLAQALLGQPRLLLLDEPTVGLDPIATQDLY 168
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+ L L+ +G ++I +H L V+ +R +L RG ++ + + E
Sbjct: 169 QLLDRLRWQGTSIILCSHVLPGVEAHINRAAILTRGRLLALGSLARLRE 217
Score = 73.0 bits (176), Expect = 7e-12
Identities = 49/208 (23%), Positives = 107/208 (50%), Gaps = 16/208 (7%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
++G+ L +GE+LG+ G G G+ + + G+ +G++ + G+ P+ +
Sbjct: 19 LRGLDLTLAQGEVLGLFGHNGAGKTTTMKLILGLLRASEGEVRVFGR----APSDPSVRQ 74
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
L Y+P+ NV+ L+ L + H R+ A E ++E+ L +
Sbjct: 75 MLGYLPE----------NVMFYPQLSGLETLRHFARLK-GAAPEQVERLLEEVG-LAGAA 122
Query: 392 KAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGIL 451
+ ++ S G +Q++ + + ++ +P+++++ EPT GLD AT+ + + L +LR + I+
Sbjct: 123 RRRVRTYSKGMRQRLGLAQALLGQPRLLLLDEPTVGLDPIATQDLYQLLDRLRWQGTSII 182
Query: 452 LISTDLDEILQLSDRVAVIYEGKIMSIG 479
L S L + +R A++ G+++++G
Sbjct: 183 LCSHVLPGVEAHINRAAILTRGRLLALG 210
>pir||E69771 ABC transporter (ATP-binding protein) homolog ydbJ - Bacillus
subtilis >gi|1881259|dbj|BAA19286.1| (AB001488) PROBABLE
TRANSPORT ATP BINDING PROTEIN. [Bacillus subtilis]
>gi|2632749|emb|CAB12256.1| (Z99106) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 308
Score = 114 bits (283), Expect = 2e-24
Identities = 76/247 (30%), Positives = 137/247 (54%), Gaps = 15/247 (6%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L+ +++ V EGEI GLLG NG+GK+TL+RI+ G +K G + + G + ++ E
Sbjct: 21 LKQISMDVMEGEIIGLLGPNGSGKTTLIRIIVGLLKQNSGSVTISG--FQHDTEFEKAME 78
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
+ + ++ P T ENL N KI+D E+L E + VG +++ V+
Sbjct: 79 AVGAIVENPEFYPYLTGWENL---KHFANMHKKIAD-ERL-DEVVERVGLTSAIHDKVKT 133
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKE-RGITVIFITHK 198
+G++QR+ I +A++ K+LILDEPT+ L P +K+ ++ L E G V+F TH
Sbjct: 134 YSLGMRQRLGIAQAILHRPKLLILDEPTNGLDPAGMKDFRDHIKELAEMEGTAVLFATHL 193
Query: 199 LKEVKEITDRVTVLRRGEVVGTVK---TSEVSERELARMMVQRDVVMEIS----KGKSTP 251
L+EV+++ DRV ++++GE+ V T + +E+ + + Q + ++ + +S
Sbjct: 194 LREVEDLCDRVIIIQKGEIKAEVSLQGTDQTTEKAIIEVQPQEKALNWLTGNQYQAESQD 253
Query: 252 GNTILKV 258
G +++V
Sbjct: 254 GTIVVEV 260
Score = 75.3 bits (182), Expect = 1e-12
Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
+K +S ++ EGEI+G+ G G+G+ L + G+ G + + G ++
Sbjct: 21 LKQISMDVMEGEIIGLLGPNGSGKTTLIRIIVGLLKQNSGSVTISG-----------FQH 69
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
+ VG +++ N LT + H + A+E +EVVE+ L S+
Sbjct: 70 DTEFEKAMEAVGAIVE-NPEFYPYLTGWENLKHFANMHKKIADERLDEVVERVG-LTSAI 127
Query: 392 KAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD-ERKGI 450
+K S G +Q++ + + I+ PK++++ EPT GLD + R + +L + E +
Sbjct: 128 HDKVKTYSLGMRQRLGIAQAILHRPKLLILDEPTNGLDPAGMKDFRDHIKELAEMEGTAV 187
Query: 451 LLISTDLDEILQLSDRVAVIYEGKI---MSIGKTEEFT 485
L + L E+ L DRV +I +G+I +S+ T++ T
Sbjct: 188 LFATHLLREVEDLCDRVIIIQKGEIKAEVSLQGTDQTT 225
>pir||H75157 daunorubicin resistance ATP-binding protein (drra-2) PAB2068 -
Pyrococcus abyssi (strain Orsay)
>gi|5457853|emb|CAB49343.1| (AJ248284) daunorubicin
resistance ATP-binding protein (drrA-2) [Pyrococcus
abyssi]
Length = 318
Score = 114 bits (283), Expect = 2e-24
Identities = 85/263 (32%), Positives = 144/263 (54%), Gaps = 36/263 (13%)
Query: 1 MTAVEMSGIVKVYPDGVV----------ALRGVNLKVEEGEIHGLLGENGAGKSTLMRIL 50
M A+E+ + K+YP + AL+G+ V++GE+ GLLG NGAGK+T ++IL
Sbjct: 1 MKAIEVKNLRKLYPKKIPLPFRKIEWFEALKGITFNVKKGELFGLLGPNGAGKTTTIKIL 60
Query: 51 YGEIKPTKGEIKVFGKEVSFNGPWDAIREGIAMVYQ-HFTLVPTFTVLENL-YLAMLSIN 108
++PT GE +V G ++ IR+ I +V + TL T ENL Y A +
Sbjct: 61 TTLLEPTSGEARVLGFDIVKEA--REIRKRINLVAEGERTLYWRLTAYENLRYFASIYYV 118
Query: 109 PGIKISDVEKLAKEKMREVGFEVPLNEIVEDLPV----GIQQRVEIIKALMLNAKILILD 164
P +K+A+E++R + V L + +DL + G++QR+ I KAL+ + ++L LD
Sbjct: 119 P-------KKVAEERIRNLLHMVGLWDRKDDLVMNYSRGMKQRLAIAKALINDPEVLFLD 171
Query: 165 EPT---SVLTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTV 221
EPT V + I V+EL K L ++E TV+ TH + E +E+ DR+ ++ G ++
Sbjct: 172 EPTLGLDVQSAIFVRELIKKL--VEEEKKTVLLTTHYMHEAEELCDRIAIIDHGRIIA-- 227
Query: 222 KTSEVSERELARMMVQRDVVMEI 244
+ E + +V++D ++E+
Sbjct: 228 ----LDTPEGLKKLVRKDTIVEV 246
Score = 85.4 bits (208), Expect = 1e-15
Identities = 59/238 (24%), Positives = 114/238 (47%), Gaps = 58/238 (24%)
Query: 270 DAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTK------- 322
+A+KG++F +++GE+ G+ G G G+ + L + P G+ +LG D+ K
Sbjct: 28 EALKGITFNVKKGELFGLLGPNGAGKTTTIKILTTLLEPTSGEARVLGFDIVKEAREIRK 87
Query: 323 ---------------LPAHE--RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHK 365
L A+E RY + + YVP + V + +LH
Sbjct: 88 RINLVAEGERTLYWRLTAYENLRYFASIYYVP--------------KKVAEERIRNLLHM 133
Query: 366 GRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPT 425
+ WD+ +++ + + S G +Q++ + + +I +P+V+ + EPT
Sbjct: 134 VGL-WDRKDDL------------------VMNYSRGMKQRLAIAKALINDPEVLFLDEPT 174
Query: 426 QGLDIGATEFIRKTLLKL-RDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
GLD+ + F+R+ + KL +E+K +LL + + E +L DR+A+I G+I+++ E
Sbjct: 175 LGLDVQSAIFVRELIKKLVEEEKKTVLLTTHYMHEAEELCDRIAIIDHGRIIALDTPE 232
>pir||H71006 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3257773|dbj|BAA30456.1| (AP000006) 330aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 330
Score = 114 bits (282), Expect = 3e-24
Identities = 94/335 (28%), Positives = 172/335 (51%), Gaps = 32/335 (9%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M ++E+ I+K + G L+ V+L V++GE+ LLG +G GK+T +RI+ G KP KG
Sbjct: 1 MVSIELRDIIKRF--GEFELK-VSLSVKDGELLTLLGPSGCGKTTTLRIIAGLEKPDKGR 57
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+ G++++ P++ I +V+Q + L P TV +N+ L + + ++EK
Sbjct: 58 VYFDGRDITDLPPYE---RNIGLVFQDYALFPHMTVFKNVAFG-LEVR-RVPRMEIEKRV 112
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL-TPIEVKELF 179
+E + VG N + E+L G QQRV + +AL++ +L+LDEP S L + K
Sbjct: 113 REVLDLVGLRGFENRLPEELSGGQQQRVALARALVIEPDVLLLDEPLSNLDAKVREKLRG 172
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV-----SERELARM 234
+ R +KE GIT I++TH +E ++DR+ V+ G + + ++ +E +
Sbjct: 173 EIKRIVKELGITTIYVTHDQEEAMVLSDRIAVMNFGRIEQVGEPYDLYYNPKNEFVANFL 232
Query: 235 MVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREG---EILGIAGVQ 291
+ V +E +G++ G+ +V ++ +G + + + EG E++G +
Sbjct: 233 GISNIVELEAKEGRACLGDLCFEVG----REGKGKIFFRPENVAVGEGIEAEVIGYELLP 288
Query: 292 G--------NGQRELAEAL---AGIRIPEKGKIEL 315
G G+ +AE L G +IP+K +I +
Sbjct: 289 GRVRLRLSIEGREIIAEELLSRIGKKIPKKVRIRV 323
Score = 90.9 bits (222), Expect = 3e-17
Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 275 VSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLA 334
VS +++GE+L + G G G+ +AG+ P+KG++ G+D+T LP +ER GL
Sbjct: 20 VSLSVKDGELLTLLGPSGCGKTTTLRIIAGLEKPDKGRVYFDGRDITDLPPYER-NIGLV 78
Query: 335 YVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAP 394
+ + L M V +NV L R+ + + EV++ + + P
Sbjct: 79 F----QDYALFPHMTVFKNVAFG-----LEVRRVPRMEIEKRVREVLDLVGLRGFENRLP 129
Query: 395 IKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI--LL 452
+ LSGG QQ+V + R ++ EP V+++ EP LD E +R + ++ E GI +
Sbjct: 130 -EELSGGQQQRVALARALVIEPDVLLLDEPLSNLDAKVREKLRGEIKRIVKE-LGITTIY 187
Query: 453 ISTDLDEILQLSDRVAVIYEGKIMSIGK 480
++ D +E + LSDR+AV+ G+I +G+
Sbjct: 188 VTHDQEEAMVLSDRIAVMNFGRIEQVGE 215
>pir||E72598 probable ABC-transporter ATP-binding protein APE1253 - Aeropyrum
pernix (strain K1) >gi|5104929|dbj|BAA80243.1|
(AP000061) 306aa long hypothetical ABC-transporter
ATP-binding protein [Aeropyrum pernix]
Length = 306
Score = 114 bits (282), Expect = 3e-24
Identities = 87/285 (30%), Positives = 138/285 (47%), Gaps = 28/285 (9%)
Query: 3 AVEMSGIVKVYP---DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
AV + G+VK+Y + +VALR V+L V GE+ ++G +G+GK+TL+ I+ G +P G
Sbjct: 10 AVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAG 69
Query: 60 EIKVFGKEVSFNGPWDAIR---EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDV 116
+ V G EVS G + R E + V+Q L+PT T LEN+ L M ++
Sbjct: 70 RVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLR-- 127
Query: 117 EKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVK 176
+E +R VG E+L G QQR+ + AL + I++ DEPT L +
Sbjct: 128 ---GQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGE 184
Query: 177 ELFK-TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVS-------- 227
+ + L RG TV+ TH V + DRV V+ G + G S ++
Sbjct: 185 RIVRILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRLRGVYSPSRIAGATGFGEV 243
Query: 228 ERELARMMVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAV 272
E E A V R ++ + + + + ED + + + G+DA+
Sbjct: 244 EAEKAVEAVMRRILDDAER-------RLREAEDRFRRGEVGIDAL 281
Score = 84.3 bits (205), Expect = 3e-15
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A++ VS + GE+L I G G+G+ L +AG+ P G++ + G +V+ E +
Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRR 88
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVV--LTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
L RVG V + N++ LT L +L ++ KAN + + + + L
Sbjct: 89 FRL------ERVGYVFQQH---NLIPTLTALENILLPMALA-GKANRLRGQELLRRVGLG 138
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
+ + LSGG QQ++ V + +P +IV EPT LDI E I + LL+ R
Sbjct: 139 GKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRG 198
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSI 478
++++T + +++DRVAVI +G++ +
Sbjct: 199 KTVVLTTHDPRVARMADRVAVIEDGRLRGV 228
>pir||C82526 ABC transporter ATP-binding protein XF2695 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107936|gb|AAF85492.1|AE004075_7 (AE004075) ABC
transporter ATP-binding protein [Xylella fastidiosa]
Length = 228
Score = 114 bits (282), Expect = 3e-24
Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 16/236 (6%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M+ + + K YPDG +AL V+ V EGE+ + G +GAGKSTL++++ + +PT GE
Sbjct: 1 MSVLSFDNVSKQYPDGHLALDDVSFSVAEGEMLFVTGHSGAGKSTLLKLIQLDERPTYGE 60
Query: 61 I--------KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIK 112
+ V G+++ F+ R + VYQ L+ ++V +N+ L + + GI
Sbjct: 61 VLFDDLNLLNVRGRQIPFH------RRQVGAVYQEHRLLMDYSVGDNVALPL--VLRGIP 112
Query: 113 ISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTP 172
+++ K + V + +L G QQRV I +A++ ++L+ DEPT L P
Sbjct: 113 RAEIGKQVCSVLERVSLAHRSRALPSELSAGEQQRVGIARAIISEPRLLVADEPTGNLDP 172
Query: 173 IEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+E+ + L RG +V+ ++H L +K++ RV +L G +V + +++E
Sbjct: 173 TLAEEIMQLFVELPARGTSVLVVSHDLALLKKMRKRVLILDHGRLVDDISPQDLAE 228
Score = 76.9 bits (186), Expect = 5e-13
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKI-----ELLGKDVTKLPA 325
A+ VSF + EGE+L + G G G+ L + + P G++ LL ++P
Sbjct: 19 ALDDVSFSVAEGEMLFVTGHSGAGKSTLLKLIQLDERPTYGEVLFDDLNLLNVRGRQIPF 78
Query: 326 HERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFE 385
H R + G Y + L++D +V +NV L + R + + I + V+E+
Sbjct: 79 HRR-QVGAVY----QEHRLLMDYSVGDNVALPLVLRGIPRAEIG-----KQVCSVLERVS 128
Query: 386 VLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRD 445
+ S P LS G QQ+V + R II EP+++V EPT LD E I + ++L
Sbjct: 129 LAHRSRALP-SELSAGEQQRVGIARAIISEPRLLVADEPTGNLDPTLAEEIMQLFVELPA 187
Query: 446 ERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
+L++S DL + ++ RV ++ G+++
Sbjct: 188 RGTSVLVVSHDLALLKKMRKRVLILDHGRLV 218
>sp|O34900|YTMN_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YTMN
>gi|7442519|pir||F69641 histidine transport protein hisP
- Bacillus subtilis >gi|2293251|gb|AAC00329.1|
(AF008220) putative amino acid transporter [Bacillus
subtilis] >gi|2635399|emb|CAB14894.1| (Z99118) histidine
transport protein (ATP-binding protein) [Bacillus
subtilis] >gi|2635418|emb|CAB14912.1| (Z99119) histidine
transport protein (ATP-binding protein) [Bacillus
subtilis]
Length = 259
Score = 113 bits (281), Expect = 4e-24
Identities = 69/228 (30%), Positives = 129/228 (56%), Gaps = 12/228 (5%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGP------ 73
L+G+NL V +GE+ ++G +G+GK+T +R L +P +G I + K ++ P
Sbjct: 17 LKGINLTVRKGEVVTIIGPSGSGKTTFLRCLNLLERPDEGIISIHDKVINCRFPSKKEVH 76
Query: 74 WDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPL 133
W +R+ AMV+Q + L TV+EN+ + L+I ++ D +A+ ++R+VG + L
Sbjct: 77 W--LRKQTAMVFQQYHLFAHKTVIENV-MEGLTIARKMRKQDAYAVAENELRKVGLQDKL 133
Query: 134 NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVI 193
N L G +QRV I +AL ++ +L+ DEPT+ L P V E+ + + + + G T+I
Sbjct: 134 NAYPSQLSGGQKQRVGIARALAIHPDVLLFDEPTAALDPELVGEVLEVMLEIVKTGATMI 193
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---SERELARMMVQR 238
+TH+++ + ++D+V + G +V EV ++++ R ++R
Sbjct: 194 VVTHEMEFARRVSDQVVFMDEGVIVEQGTPEEVFRHTKKDRTRQFLRR 241
>sp|P45022|YA78_HAEIN PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN HI1078
>gi|1075335|pir||G64181 ABC-type transport protein
HI1078 - Haemophilus influenzae
>gi|1574632|gb|AAC22734.1| (U32788) amino acid ABC
transporter, ATP-binding protein [Haemophilus influenzae
Rd]
Length = 257
Score = 113 bits (280), Expect = 5e-24
Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 11/226 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRIL-------YGE 53
M+ +++S I K + +G L+G++ ++ +GE+ +LG +G+GK+T +R L G
Sbjct: 1 MSMLKVSNIQKNF-NGNHVLKGIDFEINKGEVVAILGPSGSGKTTFLRCLNLLERPEQGI 59
Query: 54 IKPTKGEIKV-FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIK 112
++ T G +K+ F +++S +R +MV+Q + L P + LEN+ M+ + K
Sbjct: 60 LEFTDGSLKIDFSQKIS-KADELKLRRRSSMVFQQYNLFPHRSALENVMEGMVVVQKQDK 118
Query: 113 ISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTP 172
EK A + +VG + + L G QQRV I +AL + I++LDEPTS L P
Sbjct: 119 AQAREK-ALSLLEKVGLKNKADLFPSQLSGGQQQRVGIARALAVKPDIILLDEPTSALDP 177
Query: 173 IEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
V E+ +TL+ L + G T+I +TH+++ K++ DRV ++ G +V
Sbjct: 178 ELVGEVLQTLKMLAQEGWTMIIVTHEMQFAKDVADRVILMADGHIV 223
Score = 71.4 bits (172), Expect = 2e-11
Identities = 57/240 (23%), Positives = 117/240 (48%), Gaps = 19/240 (7%)
Query: 254 TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKI 313
++LKV ++ K+ G +KG+ FE+ +GE++ I G G+G+ L + PE+G +
Sbjct: 2 SMLKVSNIQ-KNFNGNHVLKGIDFEINKGEVVAILGPSGSGKTTFLRCLNLLERPEQGIL 60
Query: 314 EL--------LGKDVTKLPAHE-RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLH 364
E + ++K + R +S + + ++ L + +ENV + ++
Sbjct: 61 EFTDGSLKIDFSQKISKADELKLRRRSSMVF----QQYNLFPHRSALENV----MEGMVV 112
Query: 365 KGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEP 424
+ +A E ++EK + + P LSGG QQ+V + R + +P +I++ EP
Sbjct: 113 VQKQDKAQAREKALSLLEKVGLKNKADLFP-SQLSGGQQQRVGIARALAVKPDIILLDEP 171
Query: 425 TQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEF 484
T LD + +TL L E +++++ ++ ++DRV ++ +G I+ ++F
Sbjct: 172 TSALDPELVGEVLQTLKMLAQEGWTMIIVTHEMQFAKDVADRVILMADGHIVEQNTADKF 231
>gi|11499200 spermidine/putrescine ABC transporter, ATP-binding protein (potA)
[Archaeoglobus fulgidus] >gi|7445763|pir||G69450
spermidine/putrescine ABC transporter, ATP-binding
protein (potA) homolog - Archaeoglobus fulgidus
>gi|2648948|gb|AAB89638.1| (AE000991)
spermidine/putrescine ABC transporter, ATP-binding
protein (potA) [Archaeoglobus fulgidus]
Length = 345
Score = 113 bits (280), Expect = 5e-24
Identities = 84/280 (30%), Positives = 135/280 (48%), Gaps = 10/280 (3%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AVE+ GI K Y D L +NL++++GE LLG +G+GK+T++RI+ G P +G ++
Sbjct: 5 AVELEGISKSY-DSTTVLEDINLRIQQGEFFSLLGPSGSGKTTIIRIIAGLTFPDQGFVR 63
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-YLAMLSINPGIKISDVEKLAK 121
+ G++ + P+ R + MV+Q+ L P V EN+ Y L P +I D
Sbjct: 64 INGEDCTSLPPY---RRNVGMVFQNLALFPHLNVFENVAYGLRLRKIPEGEIKD-RVYRY 119
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
++ + E+ VE L G QQRV I +AL+ IL+LDEP L + +
Sbjct: 120 LELVNLDPEIYAKRKVEQLSGGQQQRVAIARALVTEPSILLLDEPLGALDLKIRQHMISE 179
Query: 182 LRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
L+ + K G T I++TH E ++DR+ VL G + E+ ER R +
Sbjct: 180 LKRIQKTLGTTFIYVTHDQSEALLLSDRLAVLNEGRIHQIGTPREIYERPKTRFVASFIG 239
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELR 280
+ + G I ++ + V GLD + +R
Sbjct: 240 ETNFLEARVVNGEVITEIGKVRV---FGLDGAREFCISIR 276
Score = 94.8 bits (232), Expect = 2e-18
Identities = 59/213 (27%), Positives = 109/213 (50%), Gaps = 10/213 (4%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
++ ++ +++GE + G G+G+ + +AG+ P++G + + G+D T LP + R
Sbjct: 21 LEDINLRIQQGEFFSLLGPSGSGKTTIIRIIAGLTFPDQGFVRINGEDCTSLPPYRR-NV 79
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
G+ + + + L +NV ENV R + +G I D+ V E+
Sbjct: 80 GMVF----QNLALFPHLNVFENVAYGLRLRKIPEGEIK-DRVYRYLELVNLDPEIY---A 131
Query: 392 KAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE-RKGI 450
K ++ LSGG QQ+V + R ++ EP ++++ EP LD+ + + L +++
Sbjct: 132 KRKVEQLSGGQQQRVAIARALVTEPSILLLDEPLGALDLKIRQHMISELKRIQKTLGTTF 191
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ ++ D E L LSDR+AV+ EG+I IG E
Sbjct: 192 IYVTHDQSEALLLSDRLAVLNEGRIHQIGTPRE 224
>dbj|BAB05817.1| (AP001514) ABC transporter (ATP-binding protein) (daunorubicin
resistance) [Bacillus halodurans]
Length = 310
Score = 113 bits (280), Expect = 5e-24
Identities = 77/245 (31%), Positives = 130/245 (52%), Gaps = 9/245 (3%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G A++ VN+ + GE GLLG NGAGKST + ++ IKPT GEIK+ G + + P D
Sbjct: 13 GQPAVQEVNMYLNSGESVGLLGPNGAGKSTTISMISTLIKPTSGEIKLNGINI-ISHPGD 71
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNE 135
IR+ + +V Q L + EN L +K +E + + VG + +
Sbjct: 72 -IRKILGVVPQELALYQELSAYEN--LKFFGSTYKMKGKHLENRIQHALEIVGLKDRQKD 128
Query: 136 IVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKE-RGITVIF 194
+V+ G+++R+ I AL+ KILILDEPT + P + +T+R L E G TV++
Sbjct: 129 LVKTFSGGMKRRINIAAALLHEPKILILDEPTVGIDPQSRNHILETVRTLNENEGTTVLY 188
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGKSTPGNT 254
+H ++EV+++ DR+ ++ GE++ + E L+ + + + +E+SK T
Sbjct: 189 TSHYMEEVEQLCDRLYIMDHGEII----AAGTKEELLSILSTEDTIKVELSKIDETFVQN 244
Query: 255 ILKVE 259
+ +E
Sbjct: 245 VKMIE 249
Score = 80.8 bits (196), Expect = 3e-14
Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K +G AV+ V+ L GE +G+ G G G+ ++ + P G+I+L G ++
Sbjct: 9 KTFKGQPAVQEVNMYLNSGESVGLLGPNGAGKSTTISMISTLIKPTSGEIKLNGINIISH 68
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
P R G+ VP + + L +++ EN+ + + K + N +
Sbjct: 69 PGDIRKILGV--VP--QELALYQELSAYENLKFFGSTYKM--------KGKHLENRIQHA 116
Query: 384 FEV--LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLL 441
E+ L K +K SGG ++++ + ++ EPK++++ EPT G+D + I +T+
Sbjct: 117 LEIVGLKDRQKDLVKTFSGGMKRRINIAAALLHEPKILILDEPTVGIDPQSRNHILETVR 176
Query: 442 KLRD-ERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L + E +L S ++E+ QL DR+ ++ G+I++ G EE
Sbjct: 177 TLNENEGTTVLYTSHYMEEVEQLCDRLYIMDHGEIIAAGTKEE 219
>gb|AAG20473.1| (AE005119) copper transport ATP-binding protein; NosF1
[Halobacterium sp. NRC-1]
Length = 304
Score = 113 bits (280), Expect = 5e-24
Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 14/263 (5%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M A+E+SG+ K Y D V AL +N+ V+EGEI+G LG NGAGKST + IL ++PT G
Sbjct: 1 MPAIELSGVSKRYGD-VTALTDLNITVDEGEIYGFLGPNGAGKSTAINILLDFVRPTTGS 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+ G + + AIR+ I ++ + F++ T +++ A+ S N +D + L
Sbjct: 60 ATILGYDAQADS--QAIRQRIGVLPEGFSVYDRLTARKHVEFAIDSKN---ATNDPDAL- 113
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+ VG + G++QR+ + AL+ + ++L+LDEP+S L P +E+
Sbjct: 114 ---LDRVGIPEAADRKAGGFSTGMRQRLGLAIALVGDPEMLLLDEPSSGLDPNGAREMRS 170
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELA--RMMVQR 238
L RG TV F +H L +V+ I D +L+ G +V + E A + V
Sbjct: 171 ILTEEANRGTTVFFSSHILGQVEAICDHAGILQNGTLVAEDSIDALREATDATTTLTVTL 230
Query: 239 DVVME--ISKGKSTPGNTILKVE 259
D V + ++ + PG + + V+
Sbjct: 231 DAVTDDAVAAANAIPGVSEVSVD 253
>sp|P50332|NODI_RHIGA NODULATION ATP-BINDING PROTEIN I >gi|1001916|emb|CAA60881.1|
(X87578) nodI [Rhizobium galegae]
Length = 347
Score = 113 bits (279), Expect = 6e-24
Identities = 73/216 (33%), Positives = 115/216 (52%), Gaps = 5/216 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+++ + +Y D V + ++ V GE GLLG NGAGKST+ R+L G P+ G+I
Sbjct: 48 AIDLQAVTMIYRDKTV-VDSLSFGVRAGECFGLLGPNGAGKSTITRMLLGMATPSAGKIS 106
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G V G R I +V Q L FTV ENL + + +EKL
Sbjct: 107 VLGLPVP--GKARLARASIGVVSQFDNLDMEFTVRENLLVFGRYFQMSTRA--IEKLIPS 162
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ E + V DL G+++R+ + +AL+ + ++LILDEPT+ L P ++++ L
Sbjct: 163 LLEFAQLEAKADVRVSDLSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWERL 222
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
R+L RG T++ TH + E + + DR+ VL G ++
Sbjct: 223 RSLLIRGKTILLTTHMMDEAERMCDRLCVLEGGRMI 258
Score = 80.8 bits (196), Expect = 3e-14
Identities = 59/220 (26%), Positives = 104/220 (46%), Gaps = 24/220 (10%)
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
R V +SF +R GE G+ G G G+ + L G+ P GKI +LG V
Sbjct: 59 RDKTVVDSLSFGVRAGECFGLLGPNGAGKSTITRMLLGMATPSAGKISVLGLPVPGKARL 118
Query: 327 ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK--- 383
R G+ D+ L ++ V EN+++ + + +M+ +EK
Sbjct: 119 ARASIGVVSQFDN----LDMEFTVRENLLV-------------FGRYFQMSTRAIEKLIP 161
Query: 384 ----FEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKT 439
F L + + LSGG ++++ + R ++ +P+++++ EPT GLD A I +
Sbjct: 162 SLLEFAQLEAKADVRVSDLSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWER 221
Query: 440 LLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
L L K ILL + +DE ++ DR+ V+ G++++ G
Sbjct: 222 LRSLLIRGKTILLTTHMMDEAERMCDRLCVLEGGRMIAEG 261
>pir||A75208 sugar transport ATP-binding protein. PAB2232 - Pyrococcus abyssi
(strain Orsay) >gi|5457621|emb|CAB49112.1| (AJ248283)
SUGAR TRANSPORT ATP-BINDING PROTEIN. [Pyrococcus abyssi]
Length = 362
Score = 113 bits (279), Expect = 6e-24
Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 11/229 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M + + IVK + + +AL +NL++++GE LLG +G+GKSTL+ + G KPT G
Sbjct: 1 MVRIRLENIVKKFGN-FIALDNINLEIKDGEFMALLGPSGSGKSTLLYTVAGIYKPTSGR 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I ++V+ P D I +V+Q++ L P TV +N+ L + K ++++
Sbjct: 60 IYFDERDVTELPPKD---RNIGLVFQNWALYPHMTVYKNIAFP-LELRKAPK-DEIDEKV 114
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTS---VLTPIEVKE 177
++ + + E L+ L G QQRV I +AL+ ++L+LDEP S L +EV+
Sbjct: 115 RKVAKMLHIEKLLDRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
K L+ KE GIT I++TH E + DR+ V+R G+++ EV
Sbjct: 175 ELKRLQ--KELGITTIYVTHDQAEALAMADRIAVIREGKILQVGTPDEV 221
Score = 102 bits (251), Expect = 1e-20
Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 19/244 (7%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
+++E++ VK A+ ++ E+++GE + + G G+G+ L +AGI P G+I
Sbjct: 4 IRLENI-VKKFGNFIALDNINLEIKDGEFMALLGPSGSGKSTLLYTVAGIYKPTSGRIYF 62
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVV--ENVVLTNLSRVLHKGRISWDKA 373
+DVT+LP P R +GLV + V N++ L + D+
Sbjct: 63 DERDVTELP------------PKDRNIGLVFQNWALYPHMTVYKNIAFPLELRKAPKDEI 110
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
+E +V + + + P + LSGG QQ+V + R +++EP+V+++ EP LD
Sbjct: 111 DEKVRKVAKMLHIEKLLDRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169
Query: 434 EFIRKTLLKLRDERKGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGL 491
+R L +L+ E GI + ++ D E L ++DR+AVI EGKI+ +G +E + +
Sbjct: 170 LEVRAELKRLQKE-LGITTIYVTHDQAEALAMADRIAVIREGKILQVGTPDEVYYKPMYK 228
Query: 492 LMGG 495
+GG
Sbjct: 229 FVGG 232
>pir||F82303 ABC transporter, ATP-binding protein VC0589 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655020|gb|AAF93756.1| (AE004144) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 305
Score = 112 bits (278), Expect = 8e-24
Identities = 64/218 (29%), Positives = 127/218 (57%), Gaps = 4/218 (1%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M A+E+ + K Y G AL+G++L+V++G+ + LLG NGAGKST + I+ + T G+
Sbjct: 1 MYALEIEQLRKTYAGGFEALKGISLQVKKGDFYALLGPNGAGKSTTIGIISSLVNKTSGK 60
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+ VFG ++ + + ++ + +V Q F P F +E + L G+ + ++ A
Sbjct: 61 VTVFGYDL--DSQLELAKQKLGLVPQEFNFNP-FETVEQIVLQQAGYY-GVPKALAKERA 116
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
K+ + ++ +E +L G+++R+ I +ALM ++LILDEPT+ + + +++
Sbjct: 117 KKYLTQLDLWEKRSERARNLSGGMKRRLMIARALMHEPQLLILDEPTAGVDIELRRSMWE 176
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
L+ + +G+T+I TH L+E + + + +++RGE++
Sbjct: 177 FLKQINAQGVTIILTTHYLEEAEMLCRHIGIIQRGELI 214
Score = 70.6 bits (170), Expect = 4e-11
Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 10/221 (4%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
L++E L G +A+KG+S ++++G+ + G G G+ ++ + GK+ +
Sbjct: 4 LEIEQLRKTYAGGFEALKGISLQVKKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVTV 63
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
G D+ + K GL VP + N E V L + + G + A E
Sbjct: 64 FGYDLDSQLELAKQKLGL--VPQE------FNFNPFETVEQIVLQQAGYYG-VPKALAKE 114
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
+ + + + L ++LSGG ++++M+ R ++ EP+++++ EPT G+DI
Sbjct: 115 RAKKYLTQLD-LWEKRSERARNLSGGMKRRLMIARALMHEPQLLILDEPTAGVDIELRRS 173
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIM 476
+ + L ++ + I+L + L+E L + +I G+++
Sbjct: 174 MWEFLKQINAQGVTIILTTHYLEEAEMLCRHIGIIQRGELI 214
>sp|P37624|YHIH_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YHIH
>gi|7430321|pir||A65146 probable ABC transporter yhiH -
Escherichia coli >gi|2367231|gb|AAC76511.1| (AE000424)
putative ATP-binding component of a transport system,
fragment 1 [Escherichia coli K12]
Length = 894
Score = 112 bits (277), Expect = 1e-23
Identities = 116/490 (23%), Positives = 227/490 (45%), Gaps = 33/490 (6%)
Query: 18 VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAI 77
VAL + L + + GL+G +G GKS+L+ ++ G +G + V G ++ +
Sbjct: 9 VALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDV 68
Query: 78 REGIAMVYQHF--TLVPTFTVLENL-YLAMLSINPGIKISDVEKLAKEKMREVGFEVPLN 134
IA + Q L T +V EN+ + A L G ++ E E + G +
Sbjct: 69 CPRIAWMPQGLGKNLYHTLSVYENVDFFARLF---GHDKAEREVRINELLTSTGLAPFRD 125
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER--GITV 192
L G++Q++ + AL+ + ++LILDEPT+ + P+ + + + ++++R ++V
Sbjct: 126 RPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSV 185
Query: 193 IFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMM----------VQRDVVM 242
+ T ++E + D + + GEV+ T E+ ++ + + QR
Sbjct: 186 LVATAYMEEAERF-DWLVAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQ 244
Query: 243 EISKGKSTPGNTILKVE--DLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAE 300
+ P N + +E DL ++ + AV V+F + GEI G G G G+ +
Sbjct: 245 AVVIPPYQPENAEIAIEARDLTMRFGSFV-AVDHVNFRIPRGEIFGFLGSNGCGKSTTMK 303
Query: 301 ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLS 360
L G+ +G+ L G+ V R + G S+ L ++ V +N+ L +
Sbjct: 304 MLTGLLPASEGEAWLFGQPVDPKDIDTRRRVGYM----SQAFSLYNELTVRQNLELH--A 357
Query: 361 RVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
R+ H I + E+ E+F++ P + L G +Q++ + +I P++++
Sbjct: 358 RLFH---IPEAEIPARVAEMSERFKLNDVEDILP-ESLPLGIRQRLSLAVAVIHRPEMLI 413
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+ EPT G+D A + + ++ L + K + IST + DR+++++ GK+++ G
Sbjct: 414 LDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGT 473
Query: 481 TEEFTLEKLG 490
+E +EK G
Sbjct: 474 PQEL-VEKRG 482
Score = 100 bits (246), Expect = 4e-20
Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 13/269 (4%)
Query: 18 VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDA- 76
VA+ VN ++ GEI G LG NG GKST M++L G + ++GE +FG+ V P D
Sbjct: 273 VAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD---PKDID 329
Query: 77 IREGIAMVYQHFTLVPTFTVLENLYL-AMLSINPGIKISD--VEKLAKEKMREVGFEVPL 133
R + + Q F+L TV +NL L A L P +I E + K+ +V +P
Sbjct: 330 TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILP- 388
Query: 134 NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVI 193
E LP+GI+QR+ + A++ ++LILDEPTS + P+ ++ + +L + I
Sbjct: 389 ----ESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTI 444
Query: 194 FITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVV-MEISKGKSTPG 252
FI+ E DR++++ G+V+ + E+ E+ A + + + ++ + G+S
Sbjct: 445 FISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFIAYLQEAAGQSNEA 504
Query: 253 NTILKVEDLWVKDDRGLDAVKGVSFELRE 281
V D +G + S+ RE
Sbjct: 505 EAPPVVHDTTHAPRQGFSLRRLFSYSRRE 533
>pir||B70483 ABC transporter - Aquifex aeolicus >gi|2984332|gb|AAC07853.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 253
Score = 112 bits (277), Expect = 1e-23
Identities = 72/216 (33%), Positives = 122/216 (56%), Gaps = 5/216 (2%)
Query: 15 DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEV-SFNG- 72
+G V L+ VN V +GEI ++G +G+GK+++ +++ G KPTKG++ VF K V +G
Sbjct: 15 EGRVILKDVNFSVYKGEIFSIIGGSGSGKTSITKLIVGLWKPTKGKVLVFRKNVPELSGL 74
Query: 73 PWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGF-EV 131
D +R+ I V+Q L ++ V EN+ L K ++ K+A E ++ V E
Sbjct: 75 ELDELRKNIGYVFQEGALFDSYRVWENVVFYYLEHGKHNK-EELRKMALENLKLVNVDES 133
Query: 132 PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-GI 190
L+ +L G+++RV I +A+ +++I DEPTS L PI + + K + L+ + G
Sbjct: 134 VLDLYPSELFGGMRKRVAIARAIATRPQLIIYDEPTSGLDPITSRVIDKLILELRNKTGT 193
Query: 191 TVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
T + +TH + I+DRV V++ GE++ K EV
Sbjct: 194 TSLVVTHDMISAFTISDRVMVIKNGEIIAIGKPDEV 229
Score = 94.4 bits (231), Expect = 3e-18
Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
++++E ++ K+ G +K V+F + +GEI I G G+G+ + + + G+ P KGK+
Sbjct: 4 VVRLEHIY-KEIEGRVILKDVNFSVYKGEIFSIIGGSGSGKTSITKLIVGLWKPTKGKVL 62
Query: 315 LLGKDVTKLPAHE--RYKSGLAYVPDSRRVGLVLDM-NVVENVVLTNLSRVLHKGRISWD 371
+ K+V +L E + + YV G + D V ENVV L G+ + +
Sbjct: 63 VFRKNVPELSGLELDELRKNIGYVFQE---GALFDSYRVWENVVFYYLEH----GKHNKE 115
Query: 372 KANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIG 431
+ +M E ++ V S L GG +++V + R I P++I+ EPT GLD
Sbjct: 116 ELRKMALENLKLVNVDESVLDLYPSELFGGMRKRVAIARAIATRPQLIIYDEPTSGLDPI 175
Query: 432 ATEFIRKTLLKLRDERKGILLIST-DLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ I K +L+LR++ L+ T D+ +SDRV VI G+I++IGK +E
Sbjct: 176 TSRVIDKLILELRNKTGTTSLVVTHDMISAFTISDRVMVIKNGEIIAIGKPDE 228
>pir||F72756 probable multiple sugar-binding transport ATP-binding protein
APE0043 - Aeropyrum pernix (strain K1)
>gi|5103431|dbj|BAA78952.1| (AP000058) 381aa long
hypothetical multiple sugar-binding transport
ATP-binding protein [Aeropyrum pernix]
Length = 381
Score = 112 bits (277), Expect = 1e-23
Identities = 73/232 (31%), Positives = 123/232 (52%), Gaps = 7/232 (3%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M + + G+VK + VVA+ V+L +++GE LLG +G GK+T +R++ G P +G
Sbjct: 14 MAEIRLEGVVKRFGK-VVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGR 72
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEK 118
I + G++V+F P D +AMV+Q++ L P +V +N+ L + G+ D+ +
Sbjct: 73 ILIDGEDVTFKDPKD---RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRR 129
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
E + + E L+ L G QQRV + +AL+ K+ ++DEP S L + +
Sbjct: 130 RVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAM 189
Query: 179 FKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
L+ L K+ IT +++TH E + DR+ V+ +G VV EV R
Sbjct: 190 RAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMR 241
Score = 85.4 bits (208), Expect = 1e-15
Identities = 62/214 (28%), Positives = 107/214 (49%), Gaps = 8/214 (3%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV V +++GE + G G G+ +AG+ P++G+I + G+DVT +R
Sbjct: 31 AVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDR-- 88
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+A V + L M+V +N+ T R G ++ D EV + +
Sbjct: 89 -NVAMV--FQNYALYPHMSVFDNIAFTLHLRRKEMG-LTKDDIRRRVIEVAKLLRIEDLL 144
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK-G 449
+ P LSGG QQ+V + R ++R PKV ++ EP LD +R L KL+ + K
Sbjct: 145 DRKP-GQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKIT 203
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ ++ D E + ++DR+AV+ +G+++ +G EE
Sbjct: 204 TVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEE 237
>emb|CAC01581.1| (AL391041) putative branched amino acid transport system
ATP-binding protein [Streptomyces coelicolor A3(2)]
Length = 261
Score = 112 bits (277), Expect = 1e-23
Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 14/245 (5%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T+VE+S + Y GV A+ L G + GL+G NGAGK+TL+ L G PT G I
Sbjct: 10 TSVEVSALTVRY-GGVKAVDDFTLSHSSGGVIGLIGPNGAGKTTLLNALSGVTPPTSGTI 68
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
+V G++++ GP R G+ +Q+ + + TVL+N+ L + + + + V LA
Sbjct: 69 RVNGRDLTGAGPVRTARLGVTRTFQNLQIFGSLTVLQNVMLPRTARSVHLSLGHVLGLAG 128
Query: 122 EKMR-------------EVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTS 168
+ R VG + E L G+Q+RVEI +AL + +L+LDEP +
Sbjct: 129 SRKRVEAERRTAGELLDRVGLGPYAHLPAESLAYGLQRRVEIARALAGDPALLLLDEPLA 188
Query: 169 VLTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
L E L ++ G+TV+ + H + V ++DRV VL G ++ + +++
Sbjct: 189 GLARAESAGLTALFTDIAAEGVTVLMVEHDVAGVFAVSDRVLVLDHGRLLADGTSEQIAA 248
Query: 229 RELAR 233
+ R
Sbjct: 249 DPVVR 253
Score = 71.4 bits (172), Expect = 2e-11
Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 14/247 (5%)
Query: 251 PGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEK 310
P T ++V L V+ G+ AV + G ++G+ G G G+ L AL+G+ P
Sbjct: 7 PVTTSVEVSALTVRYG-GVKAVDDFTLSHSSGGVIGLIGPNGAGKTTLLNALSGVTPPTS 65
Query: 311 GKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLH------ 364
G I + G+D+T + G+ + + + + V++NV+L +R +H
Sbjct: 66 GTIRVNGRDLTGAGPVRTARLGVTRT--FQNLQIFGSLTVLQNVMLPRTARSVHLSLGHV 123
Query: 365 ----KGRISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIV 420
R + E++++ L P + L+ G Q++V + R + +P +++
Sbjct: 124 LGLAGSRKRVEAERRTAGELLDRVG-LGPYAHLPAESLAYGLQRRVEIARALAGDPALLL 182
Query: 421 VSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGK 480
+ EP GL + + + E +L++ D+ + +SDRV V+ G++++ G
Sbjct: 183 LDEPLAGLARAESAGLTALFTDIAAEGVTVLMVEHDVAGVFAVSDRVLVLDHGRLLADGT 242
Query: 481 TEEFTLE 487
+E+ +
Sbjct: 243 SEQIAAD 249
>sp|P36879|YADG_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YADG
>gi|628771|pir||S45204 probable ABC-type transport
protein yagD - Escherichia coli
>gi|473794|dbj|BAA05583.1| (D26562) 'ORF' [Escherichia
coli] >gi|1786319|gb|AAC73238.1| (AE000122) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 308
Score = 111 bits (276), Expect = 1e-23
Identities = 68/216 (31%), Positives = 124/216 (56%), Gaps = 4/216 (1%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E+ + K YP GV ALRG++L+VE G+ + LLG NGAGKST + I+ + T G +
Sbjct: 4 ALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVS 63
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
VFG ++ +A R+ + +V Q F P F ++ + + G++ + +++
Sbjct: 64 VFGYDLE-KDVVNAKRQ-LGLVPQEFNFNP-FETVQQIVVNQAGYY-GVERKEAYIRSEK 119
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
++++ NE L G+++R+ I +ALM K+LILDEPT+ + + ++ L
Sbjct: 120 YLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFL 179
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
++L ++G T+I TH L+E + + + +++ GE+V
Sbjct: 180 KDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELV 215
>pir||S77745 probable transport protein - Mycoplasma capricolum (fragment)
>gi|530438|emb|CAA83763.1| (Z33105) arabinose transport
protein [Mycoplasma capricolum]
Length = 202
Score = 111 bits (276), Expect = 1e-23
Identities = 63/168 (37%), Positives = 105/168 (62%), Gaps = 4/168 (2%)
Query: 332 GLAYVPDSR-RVGLVLDMNVVENVVLTNLSRVLHK--GRISWDKANEMTNEVVEKFEVLL 388
G++++P+ R + G++LD V EN+V + + G I+ + V+++F++
Sbjct: 2 GMSHIPEDRHKHGMLLDFLVEENIVSQEIDKKPFSQFGFINKKAISRYAQTVIKEFDIRG 61
Query: 389 SSTKAPI-KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S I + LSGGNQQK +VGREI RE +++V +PT+GLD+GA E + +LK ++
Sbjct: 62 SRNGTAIARGLSGGNQQKAIVGREIKREHDLLIVVQPTRGLDVGAIENVHSQILKEKERG 121
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
+GILL+S DL+EI+ L+DR+ VI +GK++ + E++G LM G
Sbjct: 122 RGILLVSYDLNEIMALADRIVVINDGKLIGELPAKRAKKEEIGALMTG 169
>pir||H70610 probable ABC-typetransmembrane transport portein - Mycobacterium
tuberculosis (strain H37RV) >gi|3261727|emb|CAB07840.1|
(Z93777) hypothetical protein Rv1218c [Mycobacterium
tuberculosis]
Length = 311
Score = 111 bits (276), Expect = 1e-23
Identities = 92/292 (31%), Positives = 152/292 (51%), Gaps = 26/292 (8%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+ G+ K + V AL G++L V EGE+HG LG NGAGKST +RIL G +K G +++
Sbjct: 10 IEIRGLTKHF-GSVRALDGLDLTVREGEVHGFLGPNGAGKSTTLRILLGLVKADGGSVRL 68
Query: 64 FGKEVSFNGPW-DAI--REGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
G + PW DA+ IA V TL P+ T E + L + + GI + +L
Sbjct: 69 LGGD-----PWTDAVDLHRHIAYVPGDVTLWPSLTGGETIDL-LARMRGGIDNARRAELI 122
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+ F + + G +Q+V +I AL +A +L+LDEP+S L P+ +
Sbjct: 123 ER------FGLDPTKKARTYSKGNRQKVSLISALSSHATLLLLDEPSSGLDPLMENVFQQ 176
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDV 240
+ ++RG+TV+ +H L E + + ++VT++R G+ V + + R L+R ++ ++
Sbjct: 177 CIGEARQRGVTVLLSSHILAETEALCEKVTIIRAGKTVESGSLDAL--RHLSRTSIKAEM 234
Query: 241 VMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELRE-GEILGIAGVQ 291
+ G + I VED+ ++ V S LRE ++LG AGV+
Sbjct: 235 I-----GDPGDLSQIKGVEDISIEGTTVRAQVDSES--LRELIQVLGHAGVR 279
>gb|AAD44229.1|AF143772_35 (AF143772) DrrA [Mycobacterium avium]
Length = 315
Score = 111 bits (275), Expect = 2e-23
Identities = 73/224 (32%), Positives = 117/224 (51%), Gaps = 4/224 (1%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E+ G+ K + VAL GV+ V G + GLLG NGAGK+T + IL I+PT G
Sbjct: 5 AIEVEGLTKKFGGSTVALAGVDFSVPAGTVCGLLGHNGAGKTTTINILSTLIRPTSGRAS 64
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G +V P + +R I M Q L P T ENL L S G+ + A E
Sbjct: 65 VAGHDV-VRRPAE-VRASIGMAGQFTGLDPMLTGRENLVL--FSRLRGLNRRRAKARADE 120
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ + + + G+ +RV++ AL++ K+L LDEPT+ L P ++++ +
Sbjct: 121 LLEQFNLVDAADRRLSTYSGGMFRRVDLASALVVPPKVLFLDEPTTGLDPRSRRDVWALV 180
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
+L+ +GITV+ T L+E ++D + V+ G V+ + + E+
Sbjct: 181 SSLRVQGITVLLTTQYLEEADVLSDSIVVIDHGRVIASGTSEEL 224
Score = 87.0 bits (212), Expect = 4e-16
Identities = 66/228 (28%), Positives = 112/228 (48%), Gaps = 10/228 (4%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
++VE L K A+ GV F + G + G+ G G G+ L+ + P G+ +
Sbjct: 6 IEVEGLTKKFGGSTVALAGVDFSVPAGTVCGLLGHNGAGKTTTINILSTLIRPTSGRASV 65
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
G DV + PA R G+A + GL + EN+VL + R L++ R A
Sbjct: 66 AGHDVVRRPAEVRASIGMA----GQFTGLDPMLTGRENLVLFSRLRGLNRRR-----AKA 116
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
+E++E+F L+ + + SGG ++V + ++ PKV+ + EPT GLD +
Sbjct: 117 RADELLEQFN-LVDAADRRLSTYSGGMFRRVDLASALVVPPKVLFLDEPTTGLDPRSRRD 175
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + LR + +LL + L+E LSD + VI G++++ G +EE
Sbjct: 176 VWALVSSLRVQGITVLLTTQYLEEADVLSDSIVVIDHGRVIASGTSEE 223
>sp|P19844|NOSF_PSEST COPPER TRANSPORT ATP-BINDING PROTEIN NOSF >gi|95000|pir||S13584
nosF protein - Pseudomonas stutzeri
>gi|45849|emb|CAA37716.1| (X53676) ATP-binding protein,
peripheral [Pseudomonas stutzeri]
Length = 308
Score = 111 bits (274), Expect = 2e-23
Identities = 74/246 (30%), Positives = 134/246 (54%), Gaps = 28/246 (11%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M AVE+ G+ + Y + L +NL + EGE+ GL G NGAGK+T M+++ G + P++G+
Sbjct: 1 MNAVEIQGVSQRY-GSMTVLHDLNLNLGEGEVLGLFGHNGAGKTTSMKLILGLLSPSEGQ 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-YLAMLSINPGIKISDVEKL 119
+KV G+ N P +R + + ++ T P + E L + A L G ++ V++L
Sbjct: 60 VKVLGRAP--NDP--QVRRQLGYLPENVTFYPQLSGRETLRHFARLK---GAALTQVDEL 112
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+ +VG + V+ G++QR+ + +AL+ ++L+LDEPT L PI ++L+
Sbjct: 113 ----LEQVGLAHAADRRVKTYSKGMRQRLGLAQALLGEPRLLLLDEPTVGLDPIATQDLY 168
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRG--EVVGT-------------VKTS 224
+ L++RG ++I +H L V+ +R +L +G + VG+ ++ S
Sbjct: 169 LLIDRLRQRGTSIILCSHVLPGVEAHINRAAILAKGCLQAVGSLSQLRAEAGLPVRIRAS 228
Query: 225 EVSERE 230
+SER+
Sbjct: 229 GISERD 234
Score = 71.8 bits (173), Expect = 2e-11
Identities = 51/213 (23%), Positives = 107/213 (49%), Gaps = 16/213 (7%)
Query: 275 VSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLA 334
++ L EGE+LG+ G G G+ + + G+ P +G++++LG+ P + + L
Sbjct: 22 LNLNLGEGEVLGLFGHNGAGKTTSMKLILGLLSPSEGQVKVLGR----APNDPQVRRQLG 77
Query: 335 YVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAP 394
Y+P+ NV L+ + H R+ A +E++E+ + ++ +
Sbjct: 78 YLPE----------NVTFYPQLSGRETLRHFARLK-GAALTQVDELLEQVGLAHAADRR- 125
Query: 395 IKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLIS 454
+K S G +Q++ + + ++ EP+++++ EPT GLD AT+ + + +LR I+L S
Sbjct: 126 VKTYSKGMRQRLGLAQALLGEPRLLLLDEPTVGLDPIATQDLYLLIDRLRQRGTSIILCS 185
Query: 455 TDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLE 487
L + +R A++ +G + ++G + E
Sbjct: 186 HVLPGVEAHINRAAILAKGCLQAVGSLSQLRAE 218
>pir||H72272 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981834|gb|AAD36351.1|AE001783_2
(AE001783) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 369
Score = 111 bits (274), Expect = 2e-23
Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 18/228 (7%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M V + + KVY + VVA++ NL VE+ E LLG +G GK+T +R++ G + T G+
Sbjct: 3 MAQVVLENVTKVYENKVVAVKNANLVVEDKEFVVLLGPSGCGKTTTLRMIAGLEEITDGK 62
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI-----SD 115
I + GK V+ P D IAMV+Q++ L P TV EN+ G+K+ +
Sbjct: 63 IYIDGKVVNDVEPKD---RDIAMVFQNYALYPHMTVYENMAF-------GLKLRKYPKDE 112
Query: 116 VEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
+++ +E + +G E L+ L G +QRV + +A++ N K+ + DEP S L
Sbjct: 113 IDRRVREAAKILGIENLLDRKPRQLSGGQRQRVAVGRAIVRNPKVFLFDEPLSNLDAKLR 172
Query: 176 KELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEV--VGT 220
++ L+ L R T+I++TH E + D++ V++ GE+ +GT
Sbjct: 173 VQMRSELKKLHHRLQATIIYVTHDQVEAMTMADKIVVMKDGEIQQIGT 220
Score = 73.4 bits (177), Expect = 6e-12
Identities = 61/226 (26%), Positives = 100/226 (43%), Gaps = 12/226 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AVK + + + E + + G G G+ +AG+ GKI + GK V + +R
Sbjct: 21 AVKNANLVVEDKEFVVLLGPSGCGKTTTLRMIAGLEEITDGKIYIDGKVVNDVEPKDR-- 78
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+A V + L M V EN+ R K D+ + E + +
Sbjct: 79 -DIAMV--FQNYALYPHMTVYENMAFGLKLRKYPK-----DEIDRRVREAAKILGIENLL 130
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG- 449
+ P + LSGG +Q+V VGR I+R PKV + EP LD +R L KL +
Sbjct: 131 DRKP-RQLSGGQRQRVAVGRAIVRNPKVFLFDEPLSNLDAKLRVQMRSELKKLHHRLQAT 189
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
I+ ++ D E + ++D++ V+ +G+I IG E + + G
Sbjct: 190 IIYVTHDQVEAMTMADKIVVMKDGEIQQIGTPHEIYNSPANVFVAG 235
>dbj|BAB04885.1| (AP001511) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 299
Score = 111 bits (274), Expect = 2e-23
Identities = 73/219 (33%), Positives = 125/219 (56%), Gaps = 14/219 (6%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
++ + G+ K + A+ +++ V +GE+ G+LG NGAGK+T R++ G ++PT+G I
Sbjct: 2 SLTIDGVTKKFGT-FTAVNNLHVSVPKGEMFGMLGANGAGKTTTFRMILGLLEPTEGTIH 60
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL-YLAMLSINPGIKISDVEKLAK 121
+ +++N I + + L P TV + L YL L G+K D++K +
Sbjct: 61 WREQPLTYNQT-----NCIGYLPEERGLYPKLTVKDQLKYLGRLK---GMKTQDIQK--E 110
Query: 122 EKMREVGFEVPLNEI--VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
KM FEVP E VE L G QQ+++ I +++ ++LILDEP S L P+ V+ L
Sbjct: 111 MKMWLERFEVPEYEHKRVEQLSKGNQQKIQFIASVLHRPELLILDEPFSGLDPVNVELLK 170
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
K + +LK+ G T++F +H+++ V+E+ + +L RG V
Sbjct: 171 KAVIDLKKEGTTILFSSHRMEHVEELCQHLCILHRGSPV 209
Score = 71.0 bits (171), Expect = 3e-11
Identities = 50/206 (24%), Positives = 99/206 (47%), Gaps = 19/206 (9%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV + + +GE+ G+ G G G+ + G+ P +G I + +T
Sbjct: 17 AVNNLHVSVPKGEMFGMLGANGAGKTTTFRMILGLLEPTEGTIHWREQPLTY-----NQT 71
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEV---VEKFEVL 387
+ + Y+P+ R GL + V + ++ + GR+ K ++ E+ +E+FEV
Sbjct: 72 NCIGYLPEER--GLYPKLTVKD--------QLKYLGRLKGMKTQDIQKEMKMWLERFEVP 121
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
K ++ LS GNQQK+ ++ P+++++ EP GLD E ++K ++ L+ E
Sbjct: 122 EYEHKR-VEQLSKGNQQKIQFIASVLHRPELLILDEPFSGLDPVNVELLKKAVIDLKKEG 180
Query: 448 KGILLISTDLDEILQLSDRVAVIYEG 473
IL S ++ + +L + +++ G
Sbjct: 181 TTILFSSHRMEHVEELCQHLCILHRG 206
>gb|AAG20488.1| (AE005121) sulfate transport system ATP-binding protein; CysA
[Halobacterium sp. NRC-1]
Length = 343
Score = 111 bits (274), Expect = 2e-23
Identities = 87/286 (30%), Positives = 141/286 (48%), Gaps = 24/286 (8%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
MT+VE+ G+V+ + A+ V++ + +GE L+G +G GK+T +R++ G P +GE
Sbjct: 1 MTSVELQGLVRAFGSTTTAVDDVSVSIADGEFFTLVGPSGCGKTTTLRLIAGFETPDRGE 60
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I + VS P D + +V+Q + L P TV EN+ + P S E+++
Sbjct: 61 IVFGDRSVSGVPPED---RDVGIVFQSYALFPHMTVRENVAYGLRFREPPGGASTEERVS 117
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
E + V + L G QQRV + +AL +L+LDEP S L L
Sbjct: 118 -ELLSLVDLAGTGDREPAALSGGQQQRVALARALAPGPSVLLLDEPMSALDARLRDRLRG 176
Query: 181 TLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEV--VGTVKT--SEVSERELARMM 235
T++ + +E IT +++TH E I+DRV V+R G V VGT + E S R +A +
Sbjct: 177 TIKEIQRELDITTVYVTHDQAEALSISDRVAVMRDGAVVQVGTPEAVYREPSSRFVAEFV 236
Query: 236 VQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELRE 281
+ +VV + T G+++ +V GV+FE+ E
Sbjct: 237 GENNVVSGTAVPLETGGSSV---------------SVNGVTFEVSE 267
Score = 78.0 bits (189), Expect = 2e-13
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 25/220 (11%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV VS + +GE + G G G+ +AG P++G+I + V+ +P
Sbjct: 19 AVDDVSVSIADGEFFTLVGPSGCGKTTTLRLIAGFETPDRGEIVFGDRSVSGVP------ 72
Query: 331 SGLAYVPDSRRVGLVLD-------MNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK 383
P+ R VG+V M V ENV R G + ++ +E+ + V
Sbjct: 73 ------PEDRDVGIVFQSYALFPHMTVRENVAYGLRFREPPGGASTEERVSELLSLV--- 123
Query: 384 FEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
++ + + P LSGG QQ+V + R + P V+++ EP LD + +R T+ ++
Sbjct: 124 -DLAGTGDREPAA-LSGGQQQRVALARALAPGPSVLLLDEPMSALDARLRDRLRGTIKEI 181
Query: 444 RDERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
+ E + ++ D E L +SDRVAV+ +G ++ +G E
Sbjct: 182 QRELDITTVYVTHDQAEALSISDRVAVMRDGAVVQVGTPE 221
>gb|AAB46619.1| (L42008) xylose transport ATP-binding protein [Bacillus sp.]
Length = 214
Score = 110 bits (273), Expect = 3e-23
Identities = 54/153 (35%), Positives = 96/153 (62%)
Query: 337 PDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAPIK 396
PD ++ GL+L+M++++N L L RV + I + E+ +K ++ S+ + +
Sbjct: 52 PDRKKYGLILEMDIIKNSTLVALKRVTNWNMIDHALEVKYAEEMTKKMKLKASNLELKVS 111
Query: 397 HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLISTD 456
LSGGNQQKV++ + ++ P+V+++ EPT+G+D+GA I K + +L + GI+LIS++
Sbjct: 112 QLSGGNQQKVVLSKWLLNNPQVLILDEPTRGIDVGAKYEIYKIINELASQGVGIVLISSE 171
Query: 457 LDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
L E++ +SDR+ V+ EG+I E T EK+
Sbjct: 172 LPEVMGMSDRILVMSEGRITGEFSRENATQEKI 204
>sp|P45073|YHBG_HAEIN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN HI1148
>gi|1074660|pir||I64167 hypothetical protein HI1148 -
Haemophilus influenzae (strain Rd KW20)
>gi|1574704|gb|AAC22803.1| (U32794) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 241
Score = 110 bits (273), Expect = 3e-23
Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 2/230 (0%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M+ + + K Y V + V+L V EI GLLG NGAGK+T ++ G ++ +G+
Sbjct: 1 MSILTAENLAKSYKSRKV-VSDVSLTVNSNEIVGLLGPNGAGKTTTFYMVVGLVRQDQGK 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I + G+++S + + GI + Q ++ TV ENL +A+L I + + A
Sbjct: 60 IVIDGEDISLLPMHNRAQRGIGYLPQEASIFRRLTVYENL-MAVLEIRKDLTPQQRREKA 118
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
E + E + + + L G ++RVEI +AL N K ++LDEP + + PI V ++ K
Sbjct: 119 DELIEEFNISHIRDNLGQALSGGERRRVEIARALAANPKFILLDEPFAGVDPISVSDIKK 178
Query: 181 TLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
+ +L+ RG+ V+ H ++E ++ +R ++ G+++ T +V E
Sbjct: 179 IITDLRNRGLGVLITDHNVRETLDVCERAYIVGAGKIIATGTPEQVMNDE 228
Score = 96.7 bits (237), Expect = 5e-19
Identities = 65/232 (28%), Positives = 119/232 (51%), Gaps = 12/232 (5%)
Query: 254 TILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKI 313
+IL E+L K + V VS + EI+G+ G G G+ + G+ ++GKI
Sbjct: 2 SILTAENL-AKSYKSRKVVSDVSLTVNSNEIVGLLGPNGAGKTTTFYMVVGLVRQDQGKI 60
Query: 314 ELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLH-KGRISWDK 372
+ G+D++ LP H R + G+ Y+P + L V NL VL + ++ +
Sbjct: 61 VIDGEDISLLPMHNRAQRGIGYLPQEASIFRRL-------TVYENLMAVLEIRKDLTPQQ 113
Query: 373 ANEMTNEVVEKFEVLLSSTKAPI-KHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIG 431
E +E++E+F + S + + + LSGG +++V + R + PK I++ EP G+D
Sbjct: 114 RREKADELIEEFNI--SHIRDNLGQALSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
Query: 432 ATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ I+K + LR+ G+L+ ++ E L + +R ++ GKI++ G E+
Sbjct: 172 SVSDIKKIITDLRNRGLGVLITDHNVRETLDVCERAYIVGAGKIIATGTPEQ 223
>gb|AAA74953.1| (U31647) ATP-binding transport protein [Anabaena PCC7120]
Length = 171
Score = 110 bits (272), Expect = 4e-23
Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 276 SFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAY 335
SF+LR GEILG+AG+ G G+ E++ + G G++ L GK + + G+ Y
Sbjct: 2 SFKLRAGEILGLAGLVGAGRTEVSRLIFGADRKVSGEVFLNGKKLEIHSPSDAIAVGIGY 61
Query: 336 VPDSRR-VGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKAP 394
VP+ R+ GL L+M+ +N+ L L + + G ++W N++ + VE F + L++ +
Sbjct: 62 VPEDRKDQGLFLEMSSRKNIGLNRLKQDANLGIVNWGSVNKVATDAVENFHIRLANLEIR 121
Query: 395 IKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL 443
LSGGNQQK+ V R + P+V+++ EPT+G+DIGA I + + L
Sbjct: 122 AVDLSGGNQQKLPVARWLAINPRVLMLDEPTRGVDIGAKSEIYRIISDL 170
>pir||G69803 ABC transporter (ATP-binding protein) homolog yfiL - Bacillus
subtilis >gi|1817536|dbj|BAA11402.1| (D78508) YfiL
[Bacillus subtilis] >gi|2633155|emb|CAB12660.1| (Z99108)
similar to ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 311
Score = 110 bits (272), Expect = 4e-23
Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 13/230 (5%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
++ I K Y + ++G++ +++GE GLLG NGAGKST + ++ G + G I V
Sbjct: 2 LQAENIKKAYGKKTI-VKGISFSLKKGESFGLLGPNGAGKSTTISMISGLVPHDSGNITV 60
Query: 64 ----FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
GKE + ++ I +V Q L PT T ENL G+ + +K
Sbjct: 61 GGYVIGKETA------KAKQKIGIVPQEIALYPTLTAHENLMFWGKMY--GLTHDEAKKR 112
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
A E + VG + +E G+++R+ I ALM ++LI+DEPT + P +
Sbjct: 113 AAEVLEYVGLTERAKDKIETFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHIL 172
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
+T++ L E G+TVI+ +H ++EV+ + DR+ ++ +GE++ +++ R
Sbjct: 173 ETVKQLNETGMTVIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTDLCSR 222
Score = 87.0 bits (212), Expect = 4e-16
Identities = 62/232 (26%), Positives = 121/232 (51%), Gaps = 17/232 (7%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
VKG+SF L++GE G+ G G G+ ++G+ + G I + G + K A + K
Sbjct: 17 VKGISFSLKKGESFGLLGPNGAGKSTTISMISGLVPHDSGNITVGGYVIGKETAKAKQKI 76
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
G+ VP + + L + EN++ L + D+A + EV+E + L
Sbjct: 77 GI--VP--QEIALYPTLTAHENLMFWGKMYGL-----THDEAKKRAAEVLE-YVGLTERA 126
Query: 392 KAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGIL 451
K I+ SGG ++++ +G ++ +P+++++ EPT G+D + I +T+ +L + ++
Sbjct: 127 KDKIETFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLNETGMTVI 186
Query: 452 LISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLG------LLMGGVN 497
S ++E+ L DR+ +I +G++++IG T+ +LG L + G+N
Sbjct: 187 YTSHYMEEVEFLCDRIGIIDQGEMIAIG-TKTDLCSRLGGDTIIQLTVSGIN 237
>gb|AAD20382.1| (AF125999) daunorubicin resistance protein A [Mycobacterium avium]
Length = 315
Score = 110 bits (272), Expect = 4e-23
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 4/224 (1%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E+ G+ K + VAL GV+ V G + GLLG NGAGK+T + IL I+PT G
Sbjct: 5 AIEVEGLTKKFGGSTVALAGVDFSVPAGTVCGLLGHNGAGKTTTINILSTLIRPTSGRGN 64
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G +V +R I M Q L P T ENL L S G+ + A E
Sbjct: 65 VAGHDVVARPA--EVRANIGMAGQFTGLDPMLTGRENLVL--FSRLRGLNRRRAKARADE 120
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ + + + G+ +RV++ AL++ K+L LDEPT+ L P ++++ +
Sbjct: 121 LLEQFNLVDAADRRLSTYSGGMFRRVDLASALVVPPKVLFLDEPTTGLDPRSRRDVWALV 180
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
+L+ +GITV+ T L+E ++D + V+ G V+ + + E+
Sbjct: 181 SSLRVQGITVLLTTQYLEEADVLSDSIVVIDHGRVIASGTSEEL 224
Score = 84.7 bits (206), Expect = 2e-15
Identities = 66/228 (28%), Positives = 111/228 (47%), Gaps = 10/228 (4%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
++VE L K A+ GV F + G + G+ G G G+ L+ + P G+ +
Sbjct: 6 IEVEGLTKKFGGSTVALAGVDFSVPAGTVCGLLGHNGAGKTTTINILSTLIRPTSGRGNV 65
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANE 375
G DV PA R G+A + GL + EN+VL + R L++ R A
Sbjct: 66 AGHDVVARPAEVRANIGMA----GQFTGLDPMLTGRENLVLFSRLRGLNRRR-----AKA 116
Query: 376 MTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
+E++E+F L+ + + SGG ++V + ++ PKV+ + EPT GLD +
Sbjct: 117 RADELLEQFN-LVDAADRRLSTYSGGMFRRVDLASALVVPPKVLFLDEPTTGLDPRSRRD 175
Query: 436 IRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + LR + +LL + L+E LSD + VI G++++ G +EE
Sbjct: 176 VWALVSSLRVQGITVLLTTQYLEEADVLSDSIVVIDHGRVIASGTSEE 223
>pir||D75447 ABC transporter, ATP-binding protein - Deinococcus radiodurans
(strain R1) >gi|6458742|gb|AAF10588.1|AE001953_2
(AE001953) ABC transporter, ATP-binding protein
[Deinococcus radiodurans]
Length = 307
Score = 110 bits (272), Expect = 4e-23
Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 14/223 (6%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AVE+ G+ K Y V L V L V GE++ L G NGAGK+TL+R+L G PT+GE++
Sbjct: 11 AVEVRGLSKSYGRANV-LTDVFLNVIPGEVYALTGPNGAGKTTLIRMLTGLAFPTRGEVR 69
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLY----LAMLSINPGIKISDVEK 118
+ G V +GP G A+V P FT ENL L + PG +IS+V
Sbjct: 70 IMGVNVHTDGPRARALMG-AVVEAPAKFYPQFTGTENLKIHASLTGAGVGPG-RISEV-- 125
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
LA ++ +G V + +G +QR+ + A++ K+LILDEPTS L P+ + +
Sbjct: 126 LALLELTSMG-----GRRVAEYSLGQRQRLGVASAILAEPKVLILDEPTSGLDPLGIGLI 180
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTV 221
+ + +L G VI TH L+E+ V ++ G +V TV
Sbjct: 181 HRIVTSLATSGCAVILSTHHLREIATYAHTVGIMTGGRLVDTV 223
>pir||E75579 branched-chain amino acid ABC tranpsorter, ATP binding protein -
Deinococcus radiodurans (strain R1)
>gi|6460675|gb|AAF12380.1|AE001863_5 (AE001863)
branched-chain amino acid ABC tranpsorter, ATP binding
protein [Deinococcus radiodurans]
Length = 587
Score = 110 bits (272), Expect = 4e-23
Identities = 70/230 (30%), Positives = 115/230 (49%), Gaps = 13/230 (5%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G+ A+ V+ V GEI GL+G NGAGKST+ ++ G T G ++V G +
Sbjct: 351 GLKAVNDVSFDVNAGEIVGLIGPNGAGKSTMFNLVTGVNPATSGTVEVLGHDAGRLPARA 410
Query: 76 AIREGIAMVYQHFTLVPTFTVLEN------------LYLAMLSINPGIKISDVEKLAKEK 123
R G+A +QH L P ++LEN L +ML + G + + ++ LA +
Sbjct: 411 IHRLGVARTFQHVKLFPELSLLENTMMGGYARGQAGLLRSMLHLERGEEAA-LQGLALTQ 469
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
+ VG E +L +G Q+ +EI +AL+ + L+LDEP + L E +EL LR
Sbjct: 470 LERVGLSEQAYEQAGNLALGQQRLLEIARALVADPSFLLLDEPAAGLRFGEKQELATLLR 529
Query: 184 NLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
L++ G+T++ + H + V + DR+ V+ G+ + +V R
Sbjct: 530 KLRDEGVTILIVEHDMDLVMNLVDRLVVMNSGQELAQGSPQQVRSNPAVR 579
Score = 104 bits (257), Expect = 2e-21
Identities = 67/240 (27%), Positives = 125/240 (51%), Gaps = 10/240 (4%)
Query: 251 PGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEK 310
PG+ ILKV + VK GL AV VSF++ GEI+G+ G G G+ + + G+
Sbjct: 335 PGSPILKVRNA-VKQFGGLKAVNDVSFDVNAGEIVGLIGPNGAGKSTMFNLVTGVNPATS 393
Query: 311 GKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRV---LHKGR 367
G +E+LG D +LPA ++ G+A + V L +++++EN ++ +R L +
Sbjct: 394 GTVEVLGHDAGRLPARAIHRLGVART--FQHVKLFPELSLLENTMMGGYARGQAGLLRSM 451
Query: 368 ISWDKANEMTNEVVEKFEV----LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSE 423
+ ++ E + + ++ L +L+ G Q+ + + R ++ +P +++ E
Sbjct: 452 LHLERGEEAALQGLALTQLERVGLSEQAYEQAGNLALGQQRLLEIARALVADPSFLLLDE 511
Query: 424 PTQGLDIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
P GL G + + L KLRDE IL++ D+D ++ L DR+ V+ G+ ++ G ++
Sbjct: 512 PAAGLRFGEKQELATLLRKLRDEGVTILIVEHDMDLVMNLVDRLVVMNSGQELAQGSPQQ 571
>gb|AAK42960.1| ABC transporter, ATP binding protein (glucose) [Sulfolobus
solfataricus]
Length = 353
Score = 109 bits (271), Expect = 5e-23
Identities = 75/236 (31%), Positives = 124/236 (51%), Gaps = 6/236 (2%)
Query: 1 MTAVEMSGIVKVYPDG-VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
M + + + KV+ G VVAL VN+ +E GE G+LG +GAGK+T MRI+ G P+ G
Sbjct: 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
Query: 60 EIKVFGKEVSFNGPWDAIREG--IAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE 117
E+ + V+ NG E I MV+Q + L P T EN +A N + ++
Sbjct: 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN--IAFPLTNMKMSKEEIR 118
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
K +E + + LN +L G QQRV + +AL+ + +L+LDEP S L
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 178 LFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELA 232
++ ++ R G+T++ ++H ++ I DRV VL +G++V K ++ + ++
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234
Score = 84.7 bits (206), Expect = 2e-15
Identities = 59/224 (26%), Positives = 110/224 (48%), Gaps = 27/224 (12%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ V+ + GE GI G G G+ +AG+ +P G++ + V
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS-------N 72
Query: 331 SGLAYVPDSRRVGLVL-------DMNVVENVV--LTNLSRVLHKGRISWDKANEMTNEVV 381
L P+ R++G+V ++ EN+ LTN+ ++S ++ + EV
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRVEEVA 125
Query: 382 EKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLL 441
+ ++ P + LSGG QQ+V + R ++++P ++++ EP LD + R L+
Sbjct: 126 KILDIHHVLNHFP-RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR-ALV 183
Query: 442 KLRDERKGI--LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
K R G+ L++S D +I ++DRV V+ +GK++ +GK E+
Sbjct: 184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
>sp|P37774|YECC_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YECC
>gi|7442520|pir||B64955 ABC-type transport protein yecC
- Escherichia coli >gi|1736576|dbj|BAA15737.1| (D90832)
ORF_ID:o341#14; similar to [SwissProt Accession Number
P37774] [Escherichia coli] >gi|1788225|gb|AAC74984.1|
(AE000284) putative ATP-binding component of a transport
system [Escherichia coli K12]
Length = 250
Score = 109 bits (271), Expect = 5e-23
Identities = 67/225 (29%), Positives = 118/225 (51%), Gaps = 9/225 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M+A+E+ +VK + G L G++L+V+ GE+ ++G +G+GK+TL+R + +P G
Sbjct: 1 MSAIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGT 59
Query: 61 IKVFGKEVSFNGPWDA-------IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI 113
I V + +R+ + V+Q+F L P TVLEN+ + + G
Sbjct: 60 ITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEPK 118
Query: 114 SDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPI 173
+ A+E + +VG L G QQRV I +AL + ++++ DEPTS L P
Sbjct: 119 EEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178
Query: 174 EVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
V E+ T+R L + T++ +TH++ +++ DR + +G +V
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
Score = 76.9 bits (186), Expect = 5e-13
Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 15/231 (6%)
Query: 256 LKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIEL 315
++V++L VK G + G+ E++ GE++ I G G+G+ L ++ + PE G I +
Sbjct: 4 IEVKNL-VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITV 62
Query: 316 LGKDVTKLPAHERYKSGLAYVPDSRRVGLVLD-------MNVVENVVLTNLSRVLHKGRI 368
+ + + KS + + + VG V V+EN++ V+ KG
Sbjct: 63 GDITIDTARSLSQQKSLIRQL--RQHVGFVFQNFNLFPHRTVLENIIE---GPVIVKGEP 117
Query: 369 SWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGL 428
++A E++ K + T P + LSGG QQ+V + R + P+VI+ EPT L
Sbjct: 118 K-EEATARARELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175
Query: 429 DIGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
D + T+ +L E++ +++++ ++ ++DR + +G+I+ G
Sbjct: 176 DPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
>pir||T44443 gliding motility protein [imported] - Flavobacterium johnsoniae
>gi|2281663|gb|AAC19751.1| (AF007381) gliding motility
protein [Flavobacterium johnsoniae]
Length = 298
Score = 109 bits (271), Expect = 5e-23
Identities = 81/263 (30%), Positives = 136/263 (50%), Gaps = 25/263 (9%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
++E++ I K Y + AL ++ K+E+GEI G LG NGAGKSTLM+IL + G
Sbjct: 2 SIEVNSISKSYGEQK-ALNEISFKIEKGEIVGFLGPNGAGKSTLMKILTTYLLADSGSAL 60
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G +V N A+++ I + +H L V E YLA +DV K+ K
Sbjct: 61 VNGHDVMTNA--KAVQQSIGYLPEHNPLYLDLYVRE--YLAF--------NADVYKVPKS 108
Query: 123 KMREV----GFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
++ EV G ++ + L G +QRV + AL+ N +LILDEPT+ L P ++ E+
Sbjct: 109 RIEEVIQLTGLTPESHKKISQLSKGYRQRVGLANALLHNPDVLILDEPTTGLDPNQLMEI 168
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQR 238
++N+ + T+ TH ++EV+ I DRV ++ +G++V K + + +
Sbjct: 169 RNVIKNI-GKDKTIFLSTHIMQEVEAICDRVIIIDKGQIVADNKLDHL-------VAADK 220
Query: 239 DVVMEISKGKSTPGNTILKVEDL 261
+ V+E+ + K+E++
Sbjct: 221 EQVIEVEFDYQIEEQLLAKLENI 243
Score = 70.6 bits (170), Expect = 4e-11
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ +SF++ +GEI+G G G G+ L + L + + G + G DV + + +
Sbjct: 17 ALNEISFKIEKGEIVGFLGPNGAGKSTLMKILTTYLLADSGSALVNGHDV--MTNAKAVQ 74
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+ Y+P+ L LD+ V E + + K RI E V + L
Sbjct: 75 QSIGYLPEHNP--LYLDLYVREYLAFNADVYKVPKSRI----------EEVIQLTGLTPE 122
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
+ I LS G +Q+V + ++ P V+++ EPT GLD IR + + + K I
Sbjct: 123 SHKKISQLSKGYRQRVGLANALLHNPDVLILDEPTTGLDPNQLMEIRNVIKNIGKD-KTI 181
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
L + + E+ + DRV +I +G+I++ K +
Sbjct: 182 FLSTHIMQEVEAICDRVIIIDKGQIVADNKLD 213
>pir||D69068 methyl coenzyme M reductase system, component A2 homolog -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621192|gb|AAB84657.1| (AE000803) methyl coenzyme M
reductase system, component A2 homolog [Methanobacterium
thermoautotrophicum]
Length = 590
Score = 109 bits (271), Expect = 5e-23
Identities = 94/335 (28%), Positives = 164/335 (48%), Gaps = 30/335 (8%)
Query: 2 TAVEMSGIVKVYP----DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT 57
T + + + K Y D AL VNL+V EGEI G+LG +G+GK+TL+RIL G
Sbjct: 22 TMIRVENLTKTYKLENGDEFRALSDVNLEVAEGEILGILGMSGSGKTTLLRILRGVEPFD 81
Query: 58 KGEIKVFGKEVSFNGP---WDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIK-I 113
G I + V + + +++ A+ Q + T LEN+ + + G + +
Sbjct: 82 SGRITLDDVTVEADSSQYYFSKLKKKTAIHLQRSFGLWAETALENVIRKLYATRYGDESM 141
Query: 114 SDVE-------KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEP 166
+D + + A E +R VG E + L G +QR+ + + L ++L+LDEP
Sbjct: 142 TDFDYASDEFGEDAMELLRVVGLEHKADHFAPVLSGGEKQRLIMARQLAKKPRVLLLDEP 201
Query: 167 TSVLTPIEVKELFKTLRNL-KERGITVIFITHKLKEVKE-ITDRVTVLRRGEVVGTVKTS 224
++ P +E+ ++N+ +E G+TV+ ++H L EV E + DRV ++ G +V + S
Sbjct: 202 ATMSCPRTKQEILDAIKNINRELGVTVVLVSH-LPEVHEYLADRVVLMDGGRIVDEGEPS 260
Query: 225 EVSERELARMMVQRDVVMEISKGKSTPGNTILKVEDL-----WVKDDRGLDAVKGVSFEL 279
+ R L D+ + G IL+V L +K L+ + V+ ++
Sbjct: 261 SIIGRFL------EDIEPPVEYTPGARGKEILRVRGLGKRFVLLKGGAVLE-MSDVNLDI 313
Query: 280 REGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
EGE++ I G G G+ L + G+ +P++G +E
Sbjct: 314 AEGEMVSIIGPSGAGKTVLLRMIGGLDLPDEGTVE 348
>emb|CAB37661.1| (AJ224479) cdd4-like protein [Bacillus sphaericus]
Length = 311
Score = 109 bits (271), Expect = 5e-23
Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 21/234 (8%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
A+ +NL++ +GEI+G LG NGAGK+T +R+L G +KP+ G IK+F K++ + I
Sbjct: 27 AVSNINLQIRKGEIYGFLGPNGAGKTTTIRMLLGLMKPSSGTIKIFQKDIVKDR--IQIL 84
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL-AKEKMREVGFEVPLNEIV 137
+ + ++ + P T ENL KI V K E ++ V + N+ V
Sbjct: 85 ANVGSLVENPSYYPHLTAYENLEALR-------KILGVPKTRIDEVLQTVRLKEAANKKV 137
Query: 138 EDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTP---IEVKELFKTLRNLKERGITVIF 194
+ +G++QR+ I AL+ N ++LILDEPT+ L P IE++ L K L KE G+T+I
Sbjct: 138 KGFSLGMKQRLGIAAALLHNPELLILDEPTNGLDPSGIIEIRNLIKRLP--KEYGMTIII 195
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGK 248
+H L E+ ++ +V ++ +G ++ E R Q V ++S G+
Sbjct: 196 SSHLLSEIDQMATQVGIVSKGTLIFQ------DSIEGMRKFAQPKVTFKVSNGE 243
>sp|P08720|NODI_RHILV NODULATION ATP-BINDING PROTEIN I >gi|78028|pir||A24400 nodulation
protein nodI - Rhizobium leguminosarum
>gi|46214|emb|CAA68618.1| (Y00548) nodI [Rhizobium
leguminosarum] >gi|225122|prf||1209215A gene nodI
[Rhizobium leguminosarum]
Length = 311
Score = 109 bits (270), Expect = 7e-23
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 5/235 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A++++G+ K Y G + + ++ + GE GLLG NGAGKST+ R++ G P+ G+I
Sbjct: 12 AIDLAGVSKSY-GGKIVVNDLSFTIAAGECFGLLGPNGAGKSTITRMILGMTSPSVGKIT 70
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G + G R I +V Q L FTV ENL + + ++E +
Sbjct: 71 VLGAQEP--GQVRLARAKIGIVSQFDNLDLEFTVRENLLVYGRYFRMSTR--EIETVIPS 126
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ E N V DL G+++R+ + AL+ + ++LILDEPT+ L P +++ L
Sbjct: 127 LLEFARLESKANTRVADLSGGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERL 186
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
R+L RG T++ TH ++E + + DR+ VL G + + + E ++ +++
Sbjct: 187 RSLLARGKTILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHALIEEQIGCPVIE 241
Score = 80.0 bits (194), Expect = 6e-14
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G V +SF + GE G+ G G G+ + + G+ P GKI +LG
Sbjct: 24 GKIVVNDLSFTIAAGECFGLLGPNGAGKSTITRMILGMTSPSVGKITVLGAQEPGQVRLA 83
Query: 328 RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVL 387
R K G+ D+ L L+ V EN+++ R+S + + ++E F L
Sbjct: 84 RAKIGIVSQFDN----LDLEFTVRENLLVYG-----RYFRMSTREIETVIPSLLE-FARL 133
Query: 388 LSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S + LSGG ++++ + +I +P+++++ EPT GLD A I + L L
Sbjct: 134 ESKANTRVADLSGGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 193
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLG 490
K ILL + ++E +L DR+ V+ G+ ++ G+ E++G
Sbjct: 194 KTILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHALIEEQIG 236
>pir||H72301 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981596|gb|AAD36131.1|AE001765_10 (AE001765)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 236
Score = 109 bits (270), Expect = 7e-23
Identities = 67/228 (29%), Positives = 119/228 (51%), Gaps = 9/228 (3%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+L+ E+L + R V GV+ E GEI+G+ G G G+ + + G+ +P GKI
Sbjct: 3 VLRCENLKKRFGRRY-VVNGVNLEFHRGEIVGLLGPNGAGKTTIFNMILGVVVPTSGKII 61
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
D+TK P + R + G+ Y+ + + + V EN+ L VL +K
Sbjct: 62 FRDVDITKFPVYRRARLGITYL--QQETSIFGGLTVRENIDL-----VLRFHEKDKEKRE 114
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
E++ +F L P LSGG ++K+ + R + P I++ EP G+D +
Sbjct: 115 RKIEELLHEFH-LKHLENQPASFLSGGEKRKLELARMMCLNPAFILLDEPFSGIDPKTVK 173
Query: 435 FIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTE 482
I+K L+L+ + GI++ ++DE+++++DR+ VIY+G+I++ G E
Sbjct: 174 EIQKMTLELKQKNFGIVITDHNVDELVEIADRIYVIYKGEILAEGSPE 221
Score = 106 bits (261), Expect = 8e-22
Identities = 67/219 (30%), Positives = 114/219 (51%), Gaps = 12/219 (5%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
+ GVNL+ GEI GLLG NGAGK+T+ ++ G + PT G+I +++ + R
Sbjct: 19 VNGVNLEFHRGEIVGLLGPNGAGKTTIFNMILGVVVPTSGKIIFRDVDITKFPVYRRARL 78
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE-KMREVGFEVPL----N 134
GI + Q ++ TV EN+ L + + + +K +E K+ E+ E L N
Sbjct: 79 GITYLQQETSIFGGLTVRENIDLVL-------RFHEKDKEKRERKIEELLHEFHLKHLEN 131
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIF 194
+ L G ++++E+ + + LN ++LDEP S + P VKE+ K LK++ ++
Sbjct: 132 QPASFLSGGEKRKLELARMMCLNPAFILLDEPFSGIDPKTVKEIQKMTLELKQKNFGIVI 191
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
H + E+ EI DR+ V+ +GE++ + E E R
Sbjct: 192 TDHNVDELVEIADRIYVIYKGEILAEGSPERILEDETVR 230
>gb|AAA50516.1| (M77784) transport protein [Agrobacterium tumefaciens]
Length = 262
Score = 109 bits (269), Expect = 9e-23
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 14/236 (5%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AV++ I K + + + L GV+L EGE+ +LG +G+GKSTL+R + P G +
Sbjct: 8 AVQLKDIRKNFGN-LEVLHGVSLSANEGEVISILGSSGSGKSTLLRCVNMLEVPNAGSVA 66
Query: 63 VFGKEVSFNG-------PWDA-----IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG 110
+ G+E++ P D +RE AMV+Q F L T+L+N+ A + + G
Sbjct: 67 IMGEEIALEHRAGRLARPKDLKQVNRLRERAAMVFQGFNLWSHQTILQNVMEAPVHVQ-G 125
Query: 111 IKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
A+ + VG N +L G QQR I +AL + +++ DEPTS L
Sbjct: 126 RDRKACRDEAEALLERVGIAPNANAYPSELSGGQQQRAAIARALAMRPDVMLFDEPTSAL 185
Query: 171 TPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
P V E+ K +R+L G T++ +TH++ ++++ R L +G + +SE+
Sbjct: 186 DPELVGEVLKVMRDLAAEGRTMLIVTHEMDFARDVSSRTVFLHQGVIAEEGPSSEM 241
Score = 74.9 bits (181), Expect = 2e-12
Identities = 52/230 (22%), Positives = 102/230 (43%), Gaps = 15/230 (6%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K+ L+ + GVS EGE++ I G G+G+ L + + +P G + ++G+++
Sbjct: 16 KNFGNLEVLHGVSLSANEGEVISILGSSGSGKSTLLRCVNMLEVPNAGSVAIMGEEI--- 72
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVV---------ENVVLTNLSRV-LHKGRISWDKA 373
A E LA D ++V + + + +L N+ +H
Sbjct: 73 -ALEHRAGRLARPKDLKQVNRLRERAAMVFQGFNLWSHQTILQNVMEAPVHVQGRDRKAC 131
Query: 374 NEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGAT 433
+ ++E+ + ++ P LSGG QQ+ + R + P V++ EPT LD
Sbjct: 132 RDEAEALLERVGIAPNANAYP-SELSGGQQQRAAIARALAMRPDVMLFDEPTSALDPELV 190
Query: 434 EFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ K + L E + +L+++ ++D +S R +++G I G + E
Sbjct: 191 GEVLKVMRDLAAEGRTMLIVTHEMDFARDVSSRTVFLHQGVIAEEGPSSE 240
>sp|P72335|NODI_RHIS3 NODULATION ATP-BINDING PROTEIN I >gi|1531621|gb|AAB16898.1|
(U53327) NodI [Rhizobium sp. N33]
Length = 304
Score = 109 bits (269), Expect = 9e-23
Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 5/235 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A++++G+ K + D +V + G++ V GE GLLG NGAGKST+ R+L G P G+I
Sbjct: 5 AIDLAGVKKSFGDKLV-VNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPDAGKIT 63
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G+ V R+ I +V Q L FTV ENL + G+ ++++
Sbjct: 64 VLGEPVGARSR--LARKSIGVVPQFDNLDQEFTVRENLLVFGRYF--GMSTRKIKEVIPS 119
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ E + V +L G+++R+ + +AL+ + ++L++DEPT+ L P +++ L
Sbjct: 120 LLEFARLESKADARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERL 179
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
R L RG T+I TH ++E + + DR+ VL G + + E + +++
Sbjct: 180 RFLLARGKTIILTTHFMEEAERLCDRLCVLEHGRKLAEGSPHALIEEHIGCQVIE 234
Score = 88.9 bits (217), Expect = 1e-16
Identities = 67/222 (30%), Positives = 111/222 (49%), Gaps = 16/222 (7%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
V G+SF + GE G+ G G G+ +A L G+ +P+ GKI +LG+ V R
Sbjct: 21 VNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPDAGKITVLGEPVGARSRLARKSI 80
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR---ISWDKANEMTNEVVEKFEVLL 388
G+ D+ L + V EN+++ GR +S K E+ ++E F L
Sbjct: 81 GVVPQFDN----LDQEFTVRENLLVF--------GRYFGMSTRKIKEVIPSLLE-FARLE 127
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
S A + LSGG ++++ + R +I +P+++V+ EPT GLD A I + L L K
Sbjct: 128 SKADARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLARGK 187
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLG 490
I+L + ++E +L DR+ V+ G+ ++ G E +G
Sbjct: 188 TIILTTHFMEEAERLCDRLCVLEHGRKLAEGSPHALIEEHIG 229
>pir||E71123 probable sugar transport ATP-binding protein - Pyrococcus
horikoshii >gi|3257164|dbj|BAA29847.1| (AP000003) 357aa
long hypothetical sugar transport ATP-binding protein
[Pyrococcus horikoshii]
Length = 357
Score = 109 bits (269), Expect = 9e-23
Identities = 78/224 (34%), Positives = 121/224 (53%), Gaps = 10/224 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M V + + KV+ D VVA+ +NL+V++GE LLG +G GKST +R++ G PT+GE
Sbjct: 1 MARVLLKNVTKVFGD-VVAVNKLNLEVKDGEFMVLLGPSGCGKSTTLRLIAGLETPTEGE 59
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
I + K V+ D + +AMV+Q++ L P TV N+ + G+ S+ K
Sbjct: 60 IWIGDKLVN---DIDPTKRNVAMVFQNYALYPHMTVFGNIEFPLKM--AGVPKSERIKKV 114
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL-TPIEVKELF 179
KE +G LN +L G QQRV + +AL+ ++ +LDEP S L I + F
Sbjct: 115 KEIADFLGIGDLLNRKPSELSGGQQQRVALARALVREPEVFLLDEPLSNLDAKIRTQMRF 174
Query: 180 KTLRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEV--VGT 220
+ + L + IT I++TH E + DR+ V+ +G + VGT
Sbjct: 175 ELKKLLSYDLKITTIYVTHDQVEAMTMADRIAVMNKGVIQQVGT 218
Score = 72.6 bits (175), Expect = 9e-12
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 17/217 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV ++ E+++GE + + G G G+ +AG+ P +G+I + K V +
Sbjct: 18 AVNKLNLEVKDGEFMVLLGPSGCGKSTTLRLIAGLETPTEGEIWIGDKLVNDID------ 71
Query: 331 SGLAYVPDSRRVGLVLDMNVV--ENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
P R V +V + V N+ L + + + E+ + +
Sbjct: 72 ------PTKRNVAMVFQNYALYPHMTVFGNIEFPLKMAGVPKSERIKKVKEIADFLGIGD 125
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKL--RDE 446
+ P LSGG QQ+V + R ++REP+V ++ EP LD +R L KL D
Sbjct: 126 LLNRKP-SELSGGQQQRVALARALVREPEVFLLDEPLSNLDAKIRTQMRFELKKLLSYDL 184
Query: 447 RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + ++ D E + ++DR+AV+ +G I +G +E
Sbjct: 185 KITTIYVTHDQVEAMTMADRIAVMNKGVIQQVGTPDE 221
>dbj|BAA75396.1| (AB013378) YhaQ [Bacillus halodurans]
Length = 314
Score = 109 bits (269), Expect = 9e-23
Identities = 77/235 (32%), Positives = 127/235 (53%), Gaps = 16/235 (6%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M V+ + + K + AL +NL+V+ GEI+G +G NGAGKST +RIL G +K ++GE
Sbjct: 10 MEIVKATNVTKRF-GAFTALNRINLEVQRGEIYGFIGPNGAGKSTTIRILLGILKASEGE 68
Query: 61 IKVFGKEVSFNGPW-DAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI-SDVEK 118
K+FGK+V W DA+ +++H VP L I+ +K+ V+K
Sbjct: 69 AKIFGKDV-----WSDAVE-----IHKHLAYVPGDVSLWPNLTGGEVIDLFMKLRGSVDK 118
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
++ E F++ ++ G +Q+V ++ A A + ILDEPTS L P+ +
Sbjct: 119 KRRDHFIE-RFKLDPSKKCRTYSKGNRQKVALVAAFASGADLYILDEPTSGLDPLMERVF 177
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
+ + KE G +V+ +H L EV+ + D+V ++R+GE++ T E+ R L R
Sbjct: 178 QECVLEAKEAGKSVLLSSHILSEVERLCDKVGIIRQGEMIETGTLDEL--RHLTR 230
Score = 76.9 bits (186), Expect = 5e-13
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ ++ E++ GEI G G G G+ L GI +G+ ++ GKDV A E +K
Sbjct: 27 ALNRINLEVQRGEIYGFIGPNGAGKSTTIRILLGILKASEGEAKIFGKDVWS-DAVEIHK 85
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
LAYVP D+++ N+ + + K R S DK + +E+F++
Sbjct: 86 H-LAYVPG--------DVSLWPNLTGGEVIDLFMKLRGSVDKKRR--DHFIERFKL---D 131
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
+ S GN+QKV + + ++ EPT GLD ++ +L+ ++ K +
Sbjct: 132 PSKKCRTYSKGNRQKVALVAAFASGADLYILDEPTSGLDPLMERVFQECVLEAKEAGKSV 191
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
LL S L E+ +L D+V +I +G+++ G +E
Sbjct: 192 LLSSHILSEVERLCDKVGIIRQGEMIETGTLDE 224
>pir||C82810 nitrate ABC transporter ATP-binding protein XF0412 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105250|gb|AAF83222.1|AE003892_7 (AE003892) nitrate
ABC transporter ATP-binding protein [Xylella fastidiosa]
Length = 433
Score = 109 bits (269), Expect = 9e-23
Identities = 89/317 (28%), Positives = 156/317 (49%), Gaps = 31/317 (9%)
Query: 4 VEMSGIVKVYPDG----VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
V + G+ K Y G +V L V+L + GEI GLLG +G+GKSTL+R + G ++PT G
Sbjct: 13 VSVRGVCKTYDKGAAASLVVLEDVDLSLYSGEIVGLLGRSGSGKSTLLRAIAGLLQPTMG 72
Query: 60 EIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
EI GP +G+AMV+Q F L P TV +N+ + + + G+ + +
Sbjct: 73 EI-----AYRDGGP-----DGLAMVFQSFALFPWLTVQQNVEVGLEA--RGVLPEERRRR 120
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
A + +G + N ++L G++QRV + +AL+++ K+L++DEP S L + + L
Sbjct: 121 ALAAIDLIGMDGYENAYPKELSGGMRQRVGLARALVVHPKLLLMDEPFSALDVLTAETLR 180
Query: 180 KTLRNLKERG----ITVIFITHKLKEVKEITDRVTVL--RRGEVVGTVKTSEVSER---E 230
L +L G +++ +TH ++E + DR+ + G V+G + + R +
Sbjct: 181 TDLLDLWSEGRMPIESILMVTHNIEEAVLMCDRIMIFGSNPGRVIGEIAVALPQPRNRLD 240
Query: 231 LARMMVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGV 290
A ++ D+ ++ S P E + G+ + VS L G + +A
Sbjct: 241 PAFRVLVEDIYARMTVRSSAPAR-----EGNFPGTGIGM-VLPQVSSNLLAGLLETVAAE 294
Query: 291 QGNGQRELAEALAGIRI 307
NGQ +L A +++
Sbjct: 295 PYNGQADLPPLSASLQL 311
>dbj|BAB04722.1| (AP001510) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 305
Score = 109 bits (269), Expect = 9e-23
Identities = 77/235 (32%), Positives = 127/235 (53%), Gaps = 16/235 (6%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M V+ + + K + AL +NL+V+ GEI+G +G NGAGKST +RIL G +K ++GE
Sbjct: 1 MEIVKATNVTKRF-GAFTALNRINLEVQRGEIYGFIGPNGAGKSTTIRILLGILKASEGE 59
Query: 61 IKVFGKEVSFNGPW-DAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKI-SDVEK 118
K+FGK+V W DA+ +++H VP L I+ +K+ V+K
Sbjct: 60 AKIFGKDV-----WSDAVE-----IHKHLAYVPGDVSLWPNLTGGEVIDLFMKLRGSVDK 109
Query: 119 LAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
++ E F++ ++ G +Q+V ++ A A + ILDEPTS L P+ +
Sbjct: 110 KRRDHFIE-RFKLDPSKKCRTYSKGNRQKVALVAAFASGADLYILDEPTSGLDPLMERVF 168
Query: 179 FKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
+ + KE G +V+ +H L EV+ + D+V ++R+GE++ T E+ R L R
Sbjct: 169 QECVLEAKEAGKSVLLSSHILSEVERLCDKVGIIRQGEMIETGTLDEL--RHLTR 221
Score = 76.9 bits (186), Expect = 5e-13
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ ++ E++ GEI G G G G+ L GI +G+ ++ GKDV A E +K
Sbjct: 18 ALNRINLEVQRGEIYGFIGPNGAGKSTTIRILLGILKASEGEAKIFGKDVWS-DAVEIHK 76
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
LAYVP D+++ N+ + + K R S DK + +E+F++
Sbjct: 77 H-LAYVPG--------DVSLWPNLTGGEVIDLFMKLRGSVDKKRR--DHFIERFKL---D 122
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
+ S GN+QKV + + ++ EPT GLD ++ +L+ ++ K +
Sbjct: 123 PSKKCRTYSKGNRQKVALVAAFASGADLYILDEPTSGLDPLMERVFQECVLEAKEAGKSV 182
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
LL S L E+ +L D+V +I +G+++ G +E
Sbjct: 183 LLSSHILSEVERLCDKVGIIRQGEMIETGTLDE 215
>pir||H71066 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3257647|dbj|BAA30330.1| (AP000005) 253aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 253
Score = 108 bits (268), Expect = 1e-22
Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 6/229 (2%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
L+G+N V +GEI+GLLG NG+GKST MRIL G I +G++ V G +VS + ++E
Sbjct: 17 LKGINFTVNDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVMVAGVDVSRDPM--KVKE 74
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
+ V + L + T E + + + I +E+ K + G +N+++
Sbjct: 75 IVGYVPETPALYESLTPAE--FFSFIGGVRRIPQDILEERVKRLVDAFGIGKYMNQLIGT 132
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKL 199
L G +Q++ +I AL+ + ++LILDE + L P + + L KE G +++F TH L
Sbjct: 133 LSFGTKQKISLISALLHDPQVLILDEAMNGLDPKSARIFRELLFEFKEEGKSIVFSTHIL 192
Query: 200 KEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRDVVMEISKGK 248
+ + DR+ ++ G +V E+ RE+AR D+ +++++ K
Sbjct: 193 ALAEVMCDRIGIIYEGRIVAEGTIDEL--REIAREEKLEDIFLKLTQAK 239
Score = 85.4 bits (208), Expect = 1e-15
Identities = 59/214 (27%), Positives = 107/214 (49%), Gaps = 10/214 (4%)
Query: 270 DAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERY 329
+ +KG++F + +GEI G+ G G+G+ L+GI +GK+ + G DV++ P +
Sbjct: 15 EVLKGINFTVNDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVMVAGVDVSRDPM--KV 72
Query: 330 KSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLS 389
K + YVP++ L + E R RI D E +V+ F +
Sbjct: 73 KEIVGYVPETP--ALYESLTPAEFFSFIGGVR-----RIPQDILEERVKRLVDAFGIGKY 125
Query: 390 STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
+ I LS G +QK+ + ++ +P+V+++ E GLD + R+ L + ++E K
Sbjct: 126 MNQL-IGTLSFGTKQKISLISALLHDPQVLILDEAMNGLDPKSARIFRELLFEFKEEGKS 184
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
I+ + L + DR+ +IYEG+I++ G +E
Sbjct: 185 IVFSTHILALAEVMCDRIGIIYEGRIVAEGTIDE 218
>pir||E81023 ABC transporter, ATP-binding protein NMB1948 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227207|gb|AAF42277.1| (AE002543) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 245
Score = 108 bits (268), Expect = 1e-22
Identities = 65/227 (28%), Positives = 125/227 (54%), Gaps = 8/227 (3%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSF--NGPWDA 76
A+ +L++ +GEI GL+G +GAGKSTL+R++ +P G++ V G+E++
Sbjct: 21 AVEPTSLEIRDGEIFGLMGYSGAGKSTLLRLINLLERPDSGKVNVCGQELTALDAAALRQ 80
Query: 77 IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEI 136
R+ I MV+Q F L+ TV +N+ + G ++ KE + VG
Sbjct: 81 ARQNIGMVFQQFNLLSNRTVADNVAFPLEI--AGWPSEKIKARVKECLEIVGLTERAGHY 138
Query: 137 VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-GITVIFI 195
L G +QRV I +AL ++++ DEPTS L P + + + L ++ +R +T++ +
Sbjct: 139 PAQLSGGQKQRVGIARALAPKPQVILADEPTSALDPATTRSVLECLEDINKRFNVTIVIV 198
Query: 196 THKLKEVKEITDRVTVLRRGEVVGTVKT--SEV-SERELARMMVQRD 239
TH++ ++ + DR +L +G+VV V+ +++ ++ ++ R +++ D
Sbjct: 199 THEMSVIRRLCDRAALLDKGKVVEIVEVRGNQIHAQSDIGRELIRED 245
Score = 81.1 bits (197), Expect = 2e-14
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
+D AV+ S E+R+GEI G+ G G G+ L + + P+ GK+ + G+++T L
Sbjct: 14 RDKTRFAAVEPTSLEIRDGEIFGLMGYSGAGKSTLLRLINLLERPDSGKVNVCGQELTAL 73
Query: 324 PAHERYKSGLAYVPDSRRVGLVL-DMNVVEN-VVLTNLSRVLHKGRISWDKANEMTNEVV 381
A A + +G+V N++ N V N++ L +K E +
Sbjct: 74 DA-------AALRQARQNIGMVFQQFNLLSNRTVADNVAFPLEIAGWPSEKIKARVKECL 126
Query: 382 EKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLL 441
E + + P + LSGG +Q+V + R + +P+VI+ EPT LD T + + L
Sbjct: 127 EIVGLTERAGHYPAQ-LSGGQKQRVGIARALAPKPQVILADEPTSALDPATTRSVLECLE 185
Query: 442 KLRDE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSI 478
+ I++++ ++ I +L DR A++ +GK++ I
Sbjct: 186 DINKRFNVTIVIVTHEMSVIRRLCDRAALLDKGKVVEI 223
>pir||D82147 amino acid ABC transporter, ATP-binding protein VC1864 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656394|gb|AAF95012.1| (AE004262) amino acid ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 256
Score = 108 bits (268), Expect = 1e-22
Identities = 70/227 (30%), Positives = 122/227 (52%), Gaps = 14/227 (6%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E+ + K + V L+G++L+ ++G++ ++G +G+GKST +R + PT GEI
Sbjct: 6 ALEIKNLHKTFGQNEV-LKGISLQAQKGDVISIIGSSGSGKSTFLRCINLLETPTAGEIW 64
Query: 63 VFGKEVSFNGPWDA------------IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG 110
V G+ + IR +AMV+Q F L TVLEN+ A + +
Sbjct: 65 VKGELIQMKTTRQGTVQPAKEKQVQRIRSRLAMVFQSFNLWSHMTVLENVIEAPVHVLGV 124
Query: 111 IKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
K +E+ A+ +R+VG + L G QQR I +AL + ++++ DEPTS L
Sbjct: 125 PKAQAIEQ-AERLLRKVGLYERKDYYPGHLSGGQQQRAAIARALAVEPEVMLFDEPTSAL 183
Query: 171 TPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
P V E+ +R+L E G T++ +TH++ +++++ V L +G+V
Sbjct: 184 DPELVGEVLGVMRDLAEEGRTMLVVTHEMAFARDVSNHVMFLHQGKV 230
Score = 76.5 bits (185), Expect = 6e-13
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 270 DAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDV--------T 321
+ +KG+S + ++G+++ I G G+G+ + + P G+I + G+ + T
Sbjct: 20 EVLKGISLQAQKGDVISIIGSSGSGKSTFLRCINLLETPTAGEIWVKGELIQMKTTRQGT 79
Query: 322 KLPAHE----RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMT 377
PA E R +S LA V S L M V+ENV+ +H + +A E
Sbjct: 80 VQPAKEKQVQRIRSRLAMVFQS--FNLWSHMTVLENVI----EAPVHVLGVPKAQAIEQA 133
Query: 378 NEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIR 437
++ K + P HLSGG QQ+ + R + EP+V++ EPT LD +
Sbjct: 134 ERLLRKVGLYERKDYYP-GHLSGGQQQRAAIARALAVEPEVMLFDEPTSALDPELVGEVL 192
Query: 438 KTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ L +E + +L+++ ++ +S+ V +++GK+ GK E+
Sbjct: 193 GVMRDLAEEGRTMLVVTHEMAFARDVSNHVMFLHQGKVEEQGKPEK 238
>pir||G83031 probable ATP-binding component of ABC transporter PA4909 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9951186|gb|AAG08294.1|AE004904_2 (AE004904) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 238
Score = 108 bits (268), Expect = 1e-22
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 3/208 (1%)
Query: 10 VKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVS 69
V V+ + AL+ V+L+V EGE L+G NGAGKSTL+ ++G+ + G+I G+++
Sbjct: 11 VDVFYGPIQALKKVSLQVNEGETVSLIGANGAGKSTLLMSIFGQPRAAAGQILYRGQDIR 70
Query: 70 FNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGF 129
GIA + + P +V ENL + + I D++++ + R
Sbjct: 71 QKSAHYVASNGIAQSPEGRRVFPDMSVEENLLMGTIPIGMDHAEEDMQRMFELFPR---L 127
Query: 130 EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERG 189
+ N+ + G QQ + I +ALM K+L+LDEP+ L PI VK++F+TLR L G
Sbjct: 128 KERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFQTLRELARSG 187
Query: 190 ITVIFITHKLKEVKEITDRVTVLRRGEV 217
+T+ + +++DR V+ GE+
Sbjct: 188 MTIFLVEQNANHALKLSDRAYVMVTGEI 215
Score = 96.0 bits (235), Expect = 9e-19
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 9/215 (4%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
+ A+K VS ++ EGE + + G G G+ L ++ G G+I G+D+ + AH
Sbjct: 18 IQALKKVSLQVNEGETVSLIGANGAGKSTLLMSIFGQPRAAAGQILYRGQDIRQKSAHYV 77
Query: 329 YKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
+G+A P+ RRV DM+V EN+++ + I D A E + E F L
Sbjct: 78 ASNGIAQSPEGRRV--FPDMSVEENLLMGTIP-------IGMDHAEEDMQRMFELFPRLK 128
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
+SGG QQ + + R ++ PK++++ EP+ GL + I +TL +L
Sbjct: 129 ERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFQTLRELARSGM 188
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
I L+ + + L+LSDR V+ G+I G EE
Sbjct: 189 TIFLVEQNANHALKLSDRAYVMVTGEIRMSGSGEE 223
>emb|CAA75761.1| (Y15759) ORF1 [Streptomyces rochei]
Length = 363
Score = 108 bits (267), Expect = 2e-22
Identities = 66/216 (30%), Positives = 120/216 (55%), Gaps = 5/216 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E +G+VKV+ + A+ GV+L+V G ++GLLG NGAGK+T +++L ++P GE +
Sbjct: 6 AIETTGLVKVFGENR-AVDGVDLRVPAGTVYGLLGPNGAGKTTTVKVLATLLRPDGGEAR 64
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
VFG++V + DA+R +++ Q+ ++ T ENL L L+ G + A +
Sbjct: 65 VFGRDVLADA--DAVRGRVSLTGQYASVDEDLTGTENLLL--LARLLGHSKPAARERAAQ 120
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ G V+ G+++R++I +++ +L LDEPT+ L P +++ +
Sbjct: 121 LLDAFGLSEAAGRQVKSYSGGMRRRIDIAASILNTPDLLFLDEPTTGLDPRSRNQVWDIV 180
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
R + +G TV+ T L E ++ R+ V+ G V+
Sbjct: 181 RAVVAQGTTVLLTTQYLDEADQLASRIAVIDHGRVI 216
Score = 71.4 bits (172), Expect = 2e-11
Identities = 55/213 (25%), Positives = 103/213 (47%), Gaps = 10/213 (4%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV GV + G + G+ G G G+ + LA + P+ G+ + G+DV R +
Sbjct: 21 AVDGVDLRVPAGTVYGLLGPNGAGKTTTVKVLATLLRPDGGEARVFGRDVLADADAVRGR 80
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
L + + D+ EN++L L+R+L + + A E ++++ F L +
Sbjct: 81 VSLT----GQYASVDEDLTGTENLLL--LARLLGHSKPA---ARERAAQLLDAFG-LSEA 130
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
+K SGG ++++ + I+ P ++ + EPT GLD + + + + + +
Sbjct: 131 AGRQVKSYSGGMRRRIDIAASILNTPDLLFLDEPTTGLDPRSRNQVWDIVRAVVAQGTTV 190
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
LL + LDE QL+ R+AVI G++++ G E
Sbjct: 191 LLTTQYLDEADQLASRIAVIDHGRVIAEGTKGE 223
>pir||E83001 probable ATP-binding component of ABC transporter PA5152 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9951453|gb|AAG08537.1|AE004928_3 (AE004928) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 257
Score = 108 bits (267), Expect = 2e-22
Identities = 69/227 (30%), Positives = 121/227 (52%), Gaps = 14/227 (6%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+E+ + K Y D + L+G++L +G++ +LG +G+GKST +R + P +G+I
Sbjct: 7 ALEIRNLHKRYGD-LEVLKGISLTARDGDVISILGSSGSGKSTFLRCINLLENPHQGQIL 65
Query: 63 VFGKEV----SFNGPWDA--------IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG 110
V G+E+ S NG A +R + V+Q+F L P ++L+N+ A +
Sbjct: 66 VSGEELRLKKSKNGDLVAADSQQINRLRSELGFVFQNFNLWPHMSILDNVIEAPRRVLGK 125
Query: 111 IKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
K +E +A+ + +VG + L G QQR I + L + K+++ DEPTS L
Sbjct: 126 SKAEAIE-IAEGLLAKVGIADKRHSYPAQLSGGQQQRAAIARTLAMQPKVILFDEPTSAL 184
Query: 171 TPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
P V+E+ +R L E G T++ +TH++ ++++ V L +G V
Sbjct: 185 DPEMVQEVLNVIRALAEEGRTMLLVTHEMSFARQVSSEVVFLHQGLV 231
Score = 78.8 bits (191), Expect = 1e-13
Identities = 56/229 (24%), Positives = 113/229 (48%), Gaps = 23/229 (10%)
Query: 269 LDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHER 328
L+ +KG+S R+G+++ I G G+G+ + + P +G+I + G+++ ++
Sbjct: 20 LEVLKGISLTARDGDVISILGSSGSGKSTFLRCINLLENPHQGQILVSGEELRL----KK 75
Query: 329 YKSGLAYVPDSRRV-------GLVLD-------MNVVENVVLTNLSRVLHKGRISWDKAN 374
K+G DS+++ G V M++++NV+ RVL K + +A
Sbjct: 76 SKNGDLVAADSQQINRLRSELGFVFQNFNLWPHMSILDNVIEAP-RRVLGKSKA---EAI 131
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
E+ ++ K + P + LSGG QQ+ + R + +PKVI+ EPT LD +
Sbjct: 132 EIAEGLLAKVGIADKRHSYPAQ-LSGGQQQRAAIARTLAMQPKVILFDEPTSALDPEMVQ 190
Query: 435 FIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + L +E + +LL++ ++ Q+S V +++G + G ++
Sbjct: 191 EVLNVIRALAEEGRTMLLVTHEMSFARQVSSEVVFLHQGLVEEQGTPQQ 239
>gb|AAG19353.1| (AE005030) spermidine/putrescine ABC transporter ATP-binding; PotA1
[Halobacterium sp. NRC-1]
Length = 377
Score = 108 bits (267), Expect = 2e-22
Identities = 78/219 (35%), Positives = 119/219 (53%), Gaps = 13/219 (5%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T +E+ G+ K Y A+R ++L V EGE+ LLG +G GK+T +R+L G +PT G I
Sbjct: 25 TVLELDGVTKEY-GAETAVRDLSLSVREGELLTLLGPSGCGKTTTLRMLAGLERPTGGTI 83
Query: 62 KVFGKEVSFNGPWDAIRE-GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDV-EKL 119
++ + V+ + A + I +V+Q F L P +V EN+ + + + V E L
Sbjct: 84 ELDAQRVAGPDTFVAAEDREIGIVFQDFALFPHLSVAENVAFGLTDRDEDATAARVDEML 143
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTS---VLTPIEVK 176
A M E+G + V+ L G QQRV + ++L IL+LDEP S V +E++
Sbjct: 144 ALVDMPEMG-----DRSVDQLSGGQQQRVAVARSLAPEPDILLLDEPFSNLDVRLRVEMR 198
Query: 177 ELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRG 215
E + R LKE G+T + +TH +E I+DRV VL G
Sbjct: 199 E--EVRRILKEAGVTAVSVTHDQEEALSISDRVAVLNDG 235
Score = 82.7 bits (201), Expect = 8e-15
Identities = 67/250 (26%), Positives = 119/250 (46%), Gaps = 33/250 (13%)
Query: 245 SKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAG 304
S + + +T+L+++ + K+ AV+ +S +REGE+L + G G G+ LAG
Sbjct: 16 STAEFSGSDTVLELDGV-TKEYGAETAVRDLSLSVREGELLTLLGPSGCGKTTTLRMLAG 74
Query: 305 IRIPEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLD-------MNVVENVVLT 357
+ P G IEL D ++ + + + + R +G+V ++V ENV
Sbjct: 75 LERPTGGTIEL---DAQRVAGPDTFVAA-----EDREIGIVFQDFALFPHLSVAENVAFG 126
Query: 358 NLSRVLHKGRISWDKANEMTNEVVEKFEVLLSSTKA---PIKHLSGGNQQKVMVGREIIR 414
D+ + T V++ L+ + + LSGG QQ+V V R +
Sbjct: 127 LT-----------DRDEDATAARVDEMLALVDMPEMGDRSVDQLSGGQQQRVAVARSLAP 175
Query: 415 EPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGILLIST--DLDEILQLSDRVAVIYE 472
EP ++++ EP LD+ +R+ + ++ E G+ +S D +E L +SDRVAV+ +
Sbjct: 176 EPDILLLDEPFSNLDVRLRVEMREEVRRILKE-AGVTAVSVTHDQEEALSISDRVAVLND 234
Query: 473 GKIMSIGKTE 482
G I +G E
Sbjct: 235 GCIEQVGDPE 244
>sp|P26050|NODI_BRAJA NODULATION ATP-BINDING PROTEIN I >gi|281683|pir||S27496 nodI
protein - Bradyrhizobium japonicum
>gi|152117|gb|AAA26229.1| (J03685) nodI gene product
[Bradyrhizobium japonicum]
Length = 306
Score = 108 bits (266), Expect = 2e-22
Identities = 70/213 (32%), Positives = 114/213 (52%), Gaps = 5/213 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+++ G+ K + D V+ + ++ V GE GLLG NGAGKST+ R+L G I P +G+I
Sbjct: 7 AIDLVGVRKSFGDKVI-VNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 65
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V + V A R + +V Q L P FTV ENL + G+ +E +
Sbjct: 66 VLDEPVPSRAR--AARVAVGVVPQFDNLEPEFTVRENLLVFGRYF--GMSARTIEAVVPS 121
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ E + V L G+++R+ + +AL+ + +L++DEPT+ L P +++ L
Sbjct: 122 LLEFARLESKADVRVSLLSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERL 181
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRG 215
R L RG T++ TH ++E + + DR+ VL G
Sbjct: 182 RALLARGKTILLTTHFMEEAERLCDRLCVLESG 214
Score = 80.4 bits (195), Expect = 4e-14
Identities = 64/221 (28%), Positives = 105/221 (46%), Gaps = 14/221 (6%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
V +SF + GE G+ G G G+ +A L G+ P++GKI +L + V R
Sbjct: 23 VNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLDEPVPSRARAARVAV 82
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
G+ D+ L + V EN+++ GR A + V E +
Sbjct: 83 GVVPQFDN----LEPEFTVRENLLVF--------GRYFGMSARTIEAVVPSLLEFARLES 130
Query: 392 KAPIKH--LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
KA ++ LSGG ++++ + R +I +P ++V+ EPT GLD A I + L L K
Sbjct: 131 KADVRVSLLSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKT 190
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLG 490
ILL + ++E +L DR+ V+ G ++ GK + E +G
Sbjct: 191 ILLTTHFMEEAERLCDRLCVLESGCKIAEGKPDALIDEHIG 231
>prf||1914270A nodulation protein [Bradyrhizobium japonicum]
Length = 306
Score = 108 bits (266), Expect = 2e-22
Identities = 70/213 (32%), Positives = 114/213 (52%), Gaps = 5/213 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+++ G+ K + D V+ + ++ V GE GLLG NGAGKST+ R+L G I P +G+I
Sbjct: 7 AIDLVGVRKSFGDKVI-VNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 65
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V + V A R + +V Q L P FTV ENL + G+ +E +
Sbjct: 66 VLDEPVPSRAR--AARVAVGVVPQFDNLEPEFTVRENLLVFGRYF--GMSARTIEAVVPS 121
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ E + V L G+++R+ + +AL+ + +L++DEPT+ L P +++ L
Sbjct: 122 LLEFARLESKADVRVSLLSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERL 181
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRG 215
R L RG T++ TH ++E + + DR+ VL G
Sbjct: 182 RALLARGKTILLTTHFMEEAERLCDRLCVLESG 214
Score = 80.4 bits (195), Expect = 4e-14
Identities = 64/221 (28%), Positives = 105/221 (46%), Gaps = 14/221 (6%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
V +SF + GE G+ G G G+ +A L G+ P++GKI +L + V R
Sbjct: 23 VNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLDEPVPSRARAARVAV 82
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
G+ D+ L + V EN+++ GR A + V E +
Sbjct: 83 GVVPQFDN----LEPEFTVRENLLVF--------GRYFGMSARTIEAVVPSLLEFARLES 130
Query: 392 KAPIKH--LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
KA ++ LSGG ++++ + R +I +P ++V+ EPT GLD A I + L L K
Sbjct: 131 KADVRVSLLSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKT 190
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLG 490
ILL + ++E +L DR+ V+ G ++ GK + E +G
Sbjct: 191 ILLTTHFMEEAERLCDRLCVLESGCKIAEGKPDALIDEHIG 231
>sp|P77795|YDCT_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDCT
>gi|7445684|pir||D64896 probable ABC-type transport
protein b1441 - Escherichia coli
>gi|1742349|dbj|BAA15070.1| (D90783)
Spermidine/putrescine transport ATP-binding protein
PotA. [Escherichia coli] >gi|1742356|dbj|BAA15076.1|
(D90784) Spermidine/putrescine transport ATP-binding
protein PotA. [Escherichia coli]
>gi|1787712|gb|AAC74523.1| (AE000241) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 337
Score = 108 bits (266), Expect = 2e-22
Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 7/216 (3%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AVE + ++Y D V A+ GV++ +++GE +LG +G+GK+T +R++ G + + G I
Sbjct: 4 AVEFDNVSRLYGD-VRAVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGAIS 62
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
+FGK S PW+ + V+Q + L P ++L+N+ ++ G+ +A+E
Sbjct: 63 IFGKPASNLPPWE---RDVNTVFQDYALFPHMSILDNVAYGLMV--KGVNKKQRHAMAQE 117
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ +V L G +QRV I +AL+ ++L+LDEP L +++ L
Sbjct: 118 ALEKVALGFVHQRKPSQLSGGQRQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLEL 177
Query: 183 RNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEV 217
+ L++ GIT IF+TH E ++DRV V G +
Sbjct: 178 KKLQQSLGITFIFVTHDQGEALSMSDRVAVFNNGRI 213
Score = 88.2 bits (215), Expect = 2e-16
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 14/210 (6%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV GVS +++GE + G G+G+ +AG G I + GK + LP ER
Sbjct: 19 AVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGAISIFGKPASNLPPWERDV 78
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+ + + L M++++NV + + ++K + + M E +EK +
Sbjct: 79 NTVF-----QDYALFPHMSILDNVAYGLMVKGVNK-----KQRHAMAQEALEKVALGFVH 128
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
+ P LSGG +Q+V + R ++ EP+V+++ EP LD+ E ++ L KL+ + GI
Sbjct: 129 QRKP-SQLSGGQRQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLELKKLQ-QSLGI 186
Query: 451 --LLISTDLDEILQLSDRVAVIYEGKIMSI 478
+ ++ D E L +SDRVAV G+I +
Sbjct: 187 TFIFVTHDQGEALSMSDRVAVFNNGRIEQV 216
>gi|11499468 daunorubicin resistance ATP-binding protein (drrA) [Archaeoglobus
fulgidus] >gi|7445660|pir||C69485 daunorubicin
resistance ATP-binding protein (drrA) homolog -
Archaeoglobus fulgidus >gi|2648659|gb|AAB89368.1|
(AE000972) daunorubicin resistance ATP-binding protein
(drrA) [Archaeoglobus fulgidus]
Length = 398
Score = 108 bits (266), Expect = 2e-22
Identities = 74/248 (29%), Positives = 136/248 (54%), Gaps = 11/248 (4%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M A+E+ +VK + D A+RGV+ KV+ GEI LG NGAGK+T + IL +KPT G+
Sbjct: 77 MYAIEVENLVKKFGD-FEAVRGVSFKVKRGEIFAFLGPNGAGKTTTVHILTTLLKPTSGK 135
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
V G +V +R I +V+Q ++ T EN+ + G+K ++++
Sbjct: 136 AFVAGLDVVREA--REVRRRIGIVFQDPSVDRDLTAYENMLVH--GGVYGLKGKELKEKI 191
Query: 121 KEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFK 180
+ ++ V +++V+ G+Q+R+EI ++L+ + ++L LDEPT L P ++
Sbjct: 192 ERLLKFVELWEFRDKLVKYFSGGMQRRLEIARSLLHHPEVLFLDEPTIGLDPQTRAHVWS 251
Query: 181 TLRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQRD 239
+ +K E+ +T+ TH ++E +++ DRV ++ G ++ +E S EL R++
Sbjct: 252 YIEAMKEEQDMTIFLTTHYMEEAEKLADRVAIIDHGRII-----AEGSVEELKRLVGSDV 306
Query: 240 VVMEISKG 247
V +++ G
Sbjct: 307 VYLKVENG 314
Score = 93.6 bits (229), Expect = 4e-18
Identities = 68/235 (28%), Positives = 117/235 (48%), Gaps = 16/235 (6%)
Query: 252 GNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKG 311
G ++VE+L VK +AV+GVSF+++ GEI G G G+ L + P G
Sbjct: 76 GMYAIEVENL-VKKFGDFEAVRGVSFKVKRGEIFAFLGPNGAGKTTTVHILTTLLKPTSG 134
Query: 312 KIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWD 371
K + G DV + R RR+G+V V+ LT +L G +
Sbjct: 135 KAFVAGLDVVREAREVR-----------RRIGIVFQDPSVDR-DLTAYENMLVHGGVYGL 182
Query: 372 KANEMTNEV--VEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD 429
K E+ ++ + KF L +K+ SGG Q+++ + R ++ P+V+ + EPT GLD
Sbjct: 183 KGKELKEKIERLLKFVELWEFRDKLVKYFSGGMQRRLEIARSLLHHPEVLFLDEPTIGLD 242
Query: 430 IGATEFIRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + +++E+ + ++T ++E +L+DRVA+I G+I++ G EE
Sbjct: 243 PQTRAHVWSYIEAMKEEQDMTIFLTTHYMEEAEKLADRVAIIDHGRIIAEGSVEE 297
>pir||F82386 amino acid ABC transporter, ATP-binding protein VCA1037 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9658480|gb|AAF96931.1| (AE004429) amino acid ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 239
Score = 108 bits (266), Expect = 2e-22
Identities = 77/223 (34%), Positives = 119/223 (52%), Gaps = 16/223 (7%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M +E + K Y AL+ ++L V +GEI + G +G+GKSTL+R + G GE
Sbjct: 1 MKVIEFHQVSKWYGQ-FQALKSISLTVNKGEIVVICGPSGSGKSTLIRTVNGLESIDSGE 59
Query: 61 IKVFGKEVSFNGPWDAIREG-IAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
I V + R G I MV+QHF L P TVLENL LA + +K+S E
Sbjct: 60 IIVLPELDERTR-----RSGKIGMVFQHFNLFPHLTVLENLTLAPIRT---LKLSAQE-- 109
Query: 120 AKEKMREVGFEVPLNEIVEDLPV----GIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
AKE+ V + + P+ G QQRV I ++L + +IL+ DEPTS L P +
Sbjct: 110 AKERAYHFLQRVKITDQTHKYPIQLSGGQQQRVAIARSLCMQPEILLFDEPTSALDPETI 169
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
E+ + + +L + GIT++ +TH++ +++ RV + GE++
Sbjct: 170 NEVLEVMVDLAQDGITMMCVTHEMGFARKVAHRVMFMDEGEIL 212
Score = 78.0 bits (189), Expect = 2e-13
Identities = 51/213 (23%), Positives = 108/213 (49%), Gaps = 11/213 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+K +S + +GEI+ I G G+G+ L + G+ + G+I +L +L R
Sbjct: 18 ALKSISLTVNKGEIVVICGPSGSGKSTLIRTVNGLESIDSGEIIVL----PELDERTRRS 73
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+ V + L + V+EN+ L + + ++S +A E +++ ++ +
Sbjct: 74 GKIGMV--FQHFNLFPHLTVLENLTLAPIRTL----KLSAQEAKERAYHFLQRVKITDQT 127
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
K PI+ LSGG QQ+V + R + +P++++ EPT LD + + ++ L + +
Sbjct: 128 HKYPIQ-LSGGQQQRVAIARSLCMQPEILLFDEPTSALDPETINEVLEVMVDLAQDGITM 186
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ ++ ++ +++ RV + EG+I+ +G E+
Sbjct: 187 MCVTHEMGFARKVAHRVMFMDEGEILEVGSPEQ 219
>dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.]
Length = 663
Score = 107 bits (265), Expect = 3e-22
Identities = 69/243 (28%), Positives = 129/243 (52%), Gaps = 14/243 (5%)
Query: 4 VEMSGIVKVYP----DGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKG 59
V + I K +P + +AL+G++L++++GE L+G +G GKSTL+ ++ G PT G
Sbjct: 5 VAVENIEKSFPLSGGNEYLALKGIDLEIKQGEFISLIGHSGCGKSTLLNLIAGLELPTDG 64
Query: 60 EIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKL 119
+ + G++++ GP +V+Q+++L P TV EN+ LA+ + + + + +
Sbjct: 65 AVSLEGQQITAPGP------DRMVVFQNYSLFPWLTVRENIALAVDEVLRDLPKEERQAI 118
Query: 120 AKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
+E ++ VG ++ L G++QRV I + L K+L+LDEP L + L
Sbjct: 119 VEEHIQLVGLGHAADKPPAQLSGGMKQRVAIARGLATRPKLLLLDEPFGALDALTRGNLQ 178
Query: 180 KTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQR 238
+ L + +E +T + +TH + E ++DR+ +L G K + E ++ R +
Sbjct: 179 EKLMQICEENHVTAVMVTHDVDEAVLLSDRIVMLTNGP---GSKIGGILEVDIPRPRKRM 235
Query: 239 DVV 241
DVV
Sbjct: 236 DVV 238
Score = 79.2 bits (192), Expect = 1e-13
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 19/213 (8%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+KG+ E+++GE + + G G G+ L +AG+ +P G + L G+ +T P +R
Sbjct: 24 ALKGIDLEIKQGEFISLIGHSGCGKSTLLNLIAGLELPTDGAVSLEGQQIT-APGPDRMV 82
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLS- 389
Y L + V EN+ L + VL D E +VE+ L+
Sbjct: 83 VFQNY-------SLFPWLTVRENIALA-VDEVLR------DLPKEERQAIVEEHIQLVGL 128
Query: 390 --STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
+ P LSGG +Q+V + R + PK++++ EP LD +++ L+++ +E
Sbjct: 129 GHAADKPPAQLSGGMKQRVAIARGLATRPKLLLLDEPFGALDALTRGNLQEKLMQICEEN 188
Query: 448 K-GILLISTDLDEILQLSDRVAVIYEGKIMSIG 479
++++ D+DE + LSDR+ ++ G IG
Sbjct: 189 HVTAVMVTHDVDEAVLLSDRIVMLTNGPGSKIG 221
>sp|Q45460|OPBA_BACSU CHOLINE TRANSPORT ATP-BINDING PROTEIN OPUBA >gi|7442619|pir||G69669
choline ABC transporter (ATP-binding protein) opuBA -
Bacillus subtilis >gi|2293447|gb|AAC14356.1| (AF008930)
ATPase [Bacillus subtilis] >gi|2635886|emb|CAB15378.1|
(Z99121) choline ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 381
Score = 107 bits (265), Expect = 3e-22
Identities = 92/372 (24%), Positives = 178/372 (47%), Gaps = 32/372 (8%)
Query: 6 MSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG 65
+ + K Y G A+ VNLK+ +GE +G +G GK+T M+++ I+P+ G+I + G
Sbjct: 4 LENVSKTYKGGKKAVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSAGKIFIDG 63
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMR 125
+ + P + +R I V Q L P T+ +N +S+ P + + E+ KE+ R
Sbjct: 64 ENIMDQDPVE-LRRKIGYVIQQIGLFPHMTIQQN-----ISLVPKL-LKWPEQQRKERAR 116
Query: 126 EVGFEVPLN-EIVE----DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPI---EVKE 177
E+ V + E V+ +L G QQR+ +++AL ++++DEP L PI ++E
Sbjct: 117 ELLKLVDMGPEYVDRYPHELSGGQQQRIGVLRALAAEPPLILMDEPFGALDPITRDSLQE 176
Query: 178 LFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER---ELARM 234
FK L+ + T++F+TH + E ++ DR+ +L+ GE+V ++ E
Sbjct: 177 EFKKLQKTLHK--TIVFVTHDMDEAIKLADRIVILKAGEIVQVGTPDDILRNPADEFVEE 234
Query: 235 MVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAG---VQ 291
+ ++ +++ S + I+ + + + D+ L + + R +L + +Q
Sbjct: 235 FIGKERLIQSSSPDVERVDQIMNTQPVTITADKTLSEAIQLMRQERVDSLLVVNDERVLQ 294
Query: 292 GNGQRELAE-----ALAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVP----DSRRV 342
G E+ + A + + +LG + + + K G+ YVP D R +
Sbjct: 295 GYVDVEIIDQCRKKANLVSEVLHEDIYTVLGGTLLRDTVRKILKRGVKYVPVVDEDRRLI 354
Query: 343 GLVLDMNVVENV 354
G+V ++V+ V
Sbjct: 355 GIVTRASLVDIV 366
Score = 73.7 bits (178), Expect = 4e-12
Identities = 54/220 (24%), Positives = 106/220 (47%), Gaps = 15/220 (6%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL-PAH 326
G AV V+ ++ +GE + G G G+ + + + P GKI + G+++ P
Sbjct: 14 GKKAVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSAGKIFIDGENIMDQDPVE 73
Query: 327 ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISW--DKANEMTNEVVEKF 384
R K G +++GL M + +N+ L + W + E E+++
Sbjct: 74 LRRKIGYVI----QQIGLFPHMTIQQNISLV-------PKLLKWPEQQRKERARELLKLV 122
Query: 385 EVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLR 444
++ LSGG QQ++ V R + EP +I++ EP LD + +++ KL+
Sbjct: 123 DMGPEYVDRYPHELSGGQQQRIGVLRALAAEPPLILMDEPFGALDPITRDSLQEEFKKLQ 182
Query: 445 DE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
K I+ ++ D+DE ++L+DR+ ++ G+I+ +G ++
Sbjct: 183 KTLHKTIVFVTHDMDEAIKLADRIVILKAGEIVQVGTPDD 222
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 107 bits (264), Expect = 3e-22
Identities = 131/515 (25%), Positives = 209/515 (40%), Gaps = 40/515 (7%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEI----KPTKG 59
+ + G+ + A+ GV+L V G+ ++GE+G+GKST + G + + T G
Sbjct: 9 LSVEGLEVTFGTDAPAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGGRITAG 68
Query: 60 EIKVFGKEVSFNGPWDAIR-EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISD--- 115
+ G++++ DA R I + T L ++ + ++ +
Sbjct: 69 RVVFDGRDIT---GADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTDGR 125
Query: 116 -VEKLAKEKMREVGFEVPLNE---IVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLT 171
+ A E + E G P + L G+ QR I L ++LI DEPTS L
Sbjct: 126 AARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALD 185
Query: 172 PIEVKELFKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV---S 227
+++ L+ L E G ++ ITH L + + V V+RRG VV + +
Sbjct: 186 VTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSILQSP 245
Query: 228 ERELARMMVQRDVVM--------EISKGKSTPGNTILKVEDLW--VKDDRGLD------- 270
+ E R +V + E +T IL V +L ++ RG
Sbjct: 246 QHEYTRRLVAAAPSLTARSRRPPESRSRATTQAGDILVVSELTKIYRESRGAPWRRVESR 305
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGK-DVTKLPAHERY 329
AV GVSF L L I G G+G+ LA + G+ P G + G DV L +
Sbjct: 306 AVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSGTVVFDGTYDVGALARDQVL 365
Query: 330 KSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLS 389
P + LD + RV H G + E+V++ + S
Sbjct: 366 AFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVG--DRRQRQRAVRELVDQVALPSS 423
Query: 390 STKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLR-DERK 448
+ LSGG +Q+V + R + P+V+V E LD+ I L L+ D
Sbjct: 424 ILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQADLGL 483
Query: 449 GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L IS DL I Q++D V V+ G+++ TEE
Sbjct: 484 TYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEE 518
Score = 91.7 bits (224), Expect = 2e-17
Identities = 69/240 (28%), Positives = 121/240 (49%), Gaps = 33/240 (13%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD--- 75
A+ GV+ ++ ++GE+G+GKSTL R++ G ++PT G V F+G +D
Sbjct: 306 AVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSG-------TVVFDGTYDVGA 358
Query: 76 -------AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDV--EKLAKEKMRE 126
A R + V+Q+ ++ L+ +Y +I +++ V + + +RE
Sbjct: 359 LARDQVLAFRRRVQPVFQN-----PYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRE 413
Query: 127 VGFEVPLNEIV-----EDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ +V L + +L G +QRV I +AL L ++L+ DE S L + ++
Sbjct: 414 LVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDL 473
Query: 182 LRNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER---ELARMMVQ 237
L +L+ + G+T +FI+H L +++I D V V+R G VV T EV R E R ++Q
Sbjct: 474 LADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQ 533
>gi|10955056 occP [Agrobacterium tumefaciens] >gi|464298|sp|P35117|OCCP_AGRTU
OCTOPINE PERMEASE ATP-BINDING PROTEIN P
>gi|95106|pir||C41044 octopine transport protein occP -
Agrobacterium tumefaciens plasmid pTiA6 and pTiB6S3
>gi|154771|gb|AAA98381.1| (AF242881) occP [Agrobacterium
tumefaciens] >gi|496543|emb|CAA82985.1| (Z30328) OccP
[Agrobacterium tumefaciens]
Length = 262
Score = 107 bits (264), Expect = 3e-22
Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 14/236 (5%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AV++ I K + + + L GV+L EGE+ +LG +G+GKSTL+R + P G +
Sbjct: 8 AVQLKDIRKNFGN-LEVLHGVSLSANEGEVISILGSSGSGKSTLLRCVNMLEVPNAGSVA 66
Query: 63 VFGKEVSFNG-------PWDA-----IREGIAMVYQHFTLVPTFTVLENLYLAMLSINPG 110
+ G+E++ P D +RE AMV+Q F L T+L+N+ A + + G
Sbjct: 67 IMGEEIALEHRAGRLARPKDLKQVNRLRERAAMVFQGFNLWSHQTILQNVMEAPVHVQ-G 125
Query: 111 IKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVL 170
A+ + VG + +L G QQR I +AL + +++ DEPTS L
Sbjct: 126 RDRKACRDEAEALLERVGIASKRDAYPSELSGGQQQRAAIARALAMRPDVMLFDEPTSAL 185
Query: 171 TPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
P V E+ K +R+L G T++ +TH++ ++++ R L +G + +SE+
Sbjct: 186 DPELVGEVLKVMRDLAAEGRTMLIVTHEMDFARDVSSRTVFLHQGVIAEEGPSSEM 241
Score = 74.1 bits (179), Expect = 3e-12
Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K+ L+ + GVS EGE++ I G G+G+ L + + +P G + ++G+++
Sbjct: 16 KNFGNLEVLHGVSLSANEGEVISILGSSGSGKSTLLRCVNMLEVPNAGSVAIMGEEI--- 72
Query: 324 PAHERYKSGLAYVPDSRRVGLVLD--------------MNVVENVVLTNLSRVLHKGRIS 369
A E LA D ++V + + +++NV+ + +
Sbjct: 73 -ALEHRAGRLARPKDLKQVNRLRERAAMVFQGFNLWSHQTILQNVMEAPVHVQGRDRKAC 131
Query: 370 WDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLD 429
D+A + V + S A LSGG QQ+ + R + P V++ EPT LD
Sbjct: 132 RDEAEALLERVG-----IASKRDAYPSELSGGQQQRAAIARALAMRPDVMLFDEPTSALD 186
Query: 430 IGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ K + L E + +L+++ ++D +S R +++G I G + E
Sbjct: 187 PELVGEVLKVMRDLAAEGRTMLIVTHEMDFARDVSSRTVFLHQGVIAEEGPSSE 240
>pir||S76626 ABC-type transport protein sll0489 - Synechocystis sp. (strain PCC
6803) >gi|1001733|dbj|BAA10570.1| (D64004) ABC
transporter [Synechocystis sp.]
Length = 342
Score = 107 bits (264), Expect = 3e-22
Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 6/217 (2%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+E+ + KVY A++ V+ V++GEI G LG NGAGK+T MRIL G I T G ++V
Sbjct: 2 IEVEHLSKVY-GSTTAIQNVDFSVQKGEILGFLGPNGAGKTTTMRILAGYIPATTGTVRV 60
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G +V A+R+ I + ++ L TV +L ++ G+K D +
Sbjct: 61 AGFDVHEQSL--AVRKRIGYLPENPPLYGDMTVAS--FLNFVASIKGVKPGDRRQRVIWA 116
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
M ++ L G +QRV I +A++ + ++ILDEPT L P ++ E+ ++
Sbjct: 117 MERCQLTEKRKVLIRKLSKGFKQRVGIAQAIVHDPAVIILDEPTVGLDPKQIIEVRNLIK 176
Query: 184 NLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT 220
+L E T+I TH L EV DRVT++ +G VV T
Sbjct: 177 SLAE-DHTIILSTHILPEVSMTCDRVTIINQGRVVAT 212
Score = 74.9 bits (181), Expect = 2e-12
Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A++ V F +++GEILG G G G+ LAG G + + G DV + R +
Sbjct: 16 AIQNVDFSVQKGEILGFLGPNGAGKTTTMRILAGYIPATTGTVRVAGFDVHEQSLAVRKR 75
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKG----RISWDKANEMTNEVVEKFEV 386
G Y+P++ L DM V + + + G R+ W A E ++ EK +V
Sbjct: 76 IG--YLPENPP--LYGDMTVASFLNFVASIKGVKPGDRRQRVIW--AMERC-QLTEKRKV 128
Query: 387 LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE 446
L I+ LS G +Q+V + + I+ +P VI++ EPT GLD +R L+K E
Sbjct: 129 L-------IRKLSKGFKQRVGIAQAIVHDPAVIILDEPTVGLDPKQIIEVR-NLIKSLAE 180
Query: 447 RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLL 492
I+L + L E+ DRV +I +G++++ + E G L
Sbjct: 181 DHTIILSTHILPEVSMTCDRVTIINQGRVVATNTPDNLLAELKGNL 226
>gi|7524830 sulfate transport system permease protein [Chlorella vulgaris]
>gi|3023607|sp|P56344|CYSA_CHLVU PROBABLE SULFATE
TRANSPORT ATP-BINDING PROTEIN CYSA
>gi|7442559|pir||T07260 sulfate transport ATP-binding
protein - Chlorella vulgaris chloroplast
>gi|2224423|dbj|BAA57907.1| (AB001684) sulfate transport
system permease protein [Chlorella vulgaris]
Length = 236
Score = 107 bits (264), Expect = 3e-22
Identities = 71/216 (32%), Positives = 116/216 (52%), Gaps = 16/216 (7%)
Query: 19 ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIR 78
AL VNL+++ G + GLLG +G+GKSTL+R+L G KP G I + G++ + D R
Sbjct: 17 ALDRVNLEIKNGSLVGLLGPSGSGKSTLLRVLAGLEKPDSGRIWLEGQDATQMKLQD--R 74
Query: 79 EGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK-----MREVGFEVPL 133
E I V+Q++ L P TV EN+ G++I ++ L K+K ++ + E
Sbjct: 75 E-IGFVFQNYALFPHLTVSENVAF-------GLEIQKIDSLLKKKRVNELLKLMQLEKFG 126
Query: 134 NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKER-GITV 192
+ L G +QRV + +AL + K+L+LDEP + L K+L LR L + +T
Sbjct: 127 DSYPNQLSGGQRQRVALARALAMEPKVLLLDEPFAALDAKIRKQLRSWLRELHHKISVTT 186
Query: 193 IFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+F+TH E E+ + +L G+++ E+S+
Sbjct: 187 VFVTHDYSEAMELAQEIVLLENGKIIQIGSAQELSD 222
Score = 90.9 bits (222), Expect = 3e-17
Identities = 57/216 (26%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ V+ E++ G ++G+ G G+G+ L LAG+ P+ G+I L G+D T++ +R +
Sbjct: 17 ALDRVNLEIKNGSLVGLLGPSGSGKSTLLRVLAGLEKPDSGRIWLEGQDATQMKLQDR-E 75
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
G + + L + NV + + + +L K R+ NE+++ ++
Sbjct: 76 IGFVFQNYALFPHLTVSENVAFGLEIQKIDSLLKKKRV---------NELLKLMQLEKFG 126
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDE-RKG 449
P LSGG +Q+V + R + EPKV+++ EP LD + +R L +L +
Sbjct: 127 DSYP-NQLSGGQRQRVALARALAMEPKVLLLDEPFAALDAKIRKQLRSWLRELHHKISVT 185
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFT 485
+ ++ D E ++L+ + ++ GKI+ IG +E +
Sbjct: 186 TVFVTHDYSEAMELAQEIVLLENGKIIQIGSAQELS 221
>pir||B70118 glycine betaine, L-proline ABC transporter, ATP-binding protein
(proV) homolog - Lyme disease spirochete
>gi|2688022|gb|AAC66523.1| (AE001125) glycine betaine,
L-proline ABC transporter, ATP-binding protein (proV)
[Borrelia burgdorferi]
Length = 372
Score = 107 bits (264), Expect = 3e-22
Identities = 90/286 (31%), Positives = 143/286 (49%), Gaps = 33/286 (11%)
Query: 5 EMSGIVKVYPDG------------VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYG 52
++S +K Y DG +A +NL V E EI ++G +G GKSTL+R L G
Sbjct: 23 QISRAIKDYEDGKDRMQIYKESSIFIANANINLDVYENEILVIMGMSGCGKSTLVRCLNG 82
Query: 53 EIKPTKGEIKVFGKEVSFNGPWDAI---REGIAMVYQHFTLVPTFTVLENLYLAMLSINP 109
K G I V E++ D ++ AMV+Q+F L P VL N+ + +
Sbjct: 83 IYKIDSGSILVNNMEMNAINRKDLSNLRKDKFAMVFQNFGLFPHMNVLRNVTYGLEVKHI 142
Query: 110 GIKISDVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSV 169
KI E+ A E + VG E + + +L G++QRV I +AL++N IL++DE S
Sbjct: 143 PRKIR--EERAIEVLNLVGLEDSKYKYINELSGGMKQRVGIARALVVNPDILLMDEAFSA 200
Query: 170 LTPI----EVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSE 225
L P+ +EL + + LK+ TV+FITH L E ++ R+ +R G+++ K E
Sbjct: 201 LDPLIKGEMQEELLRLVAKLKK---TVVFITHDLNEAFKLGHRIAFMRDGKIIQVGKPLE 257
Query: 226 VSERELARMMVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDA 271
+ D + + K+ P ILK++D+ +KDD L++
Sbjct: 258 ILANP------STDFISDFI--KNLPVLNILKIKDI-LKDDFDLNS 294
>emb|CAB88183.1| (AL352972) putative ABC transporter ATP-binding subunit
[Streptomyces coelicolor A3(2)]
Length = 308
Score = 107 bits (264), Expect = 3e-22
Identities = 101/325 (31%), Positives = 150/325 (46%), Gaps = 41/325 (12%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
AV +G K Y D V A+ GV+L++ GE LLG NGAGKST + +L G P G ++
Sbjct: 10 AVAFTGAAKAYGD-VRAVDGVDLRIGCGETVALLGRNGAGKSTTIALLLGLCPPDAGTVE 68
Query: 63 VFGKEVSFNGPWD-AIREG-IAMVYQHFTLVPTFTVLENL------YLAMLSINPGIKIS 114
+FG GP + A+R G + + Q VP TV E + Y A + + ++++
Sbjct: 69 LFG------GPAERAVRAGRVGAMLQEARAVPRVTVGELVAFVAGRYPAPMPVGQALELA 122
Query: 115 DVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIE 174
+E+LA + V+ L G QRV AL +L+LDEPT+ L +E
Sbjct: 123 GIERLAGRR-------------VDRLSGGQTQRVRFALALAGRPDLLVLDEPTAAL-DVE 168
Query: 175 VKELF-KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
+ F ++R RG TV+F TH L+E + DR+ V+ RG +V T + R
Sbjct: 169 ARHAFWHSMRAYARRGSTVLFSTHYLEEAEAHADRILVVDRGRIVAD-GTGDELRRAAGG 227
Query: 234 MMVQRDVVMEISKGKSTPGNTILK-VEDLWVKDDRGL----DAVKGVSFELREGEILGIA 288
V D+ G++T T+L V L V+ DR L D+ V R G I G+
Sbjct: 228 SRVSFDLA-----GRATEDLTLLPGVRSLEVRGDRALLRTEDSDATVIALARLGAIRGLE 282
Query: 289 GVQGNGQRELAEALAGIRIPEKGKI 313
+ +PEK +
Sbjct: 283 VAPASLDDAFLALTTAAPVPEKESV 307
>pir||H83609 sulfate transport protein CysA PA0280 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946123|gb|AAG03669.1|AE004466_3 (AE004466) sulfate
transport protein CysA [Pseudomonas aeruginosa]
Length = 329
Score = 107 bits (264), Expect = 3e-22
Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 11/231 (4%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
++E+ + K + + AL +NL ++ GE+ LLG +G GK+TL+RI+ G P G I
Sbjct: 2 SIEIRNVSKNF-NAFKALDDINLDIQSGELVALLGPSGCGKTTLLRIIAGLETPDAGNIV 60
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
G++VS + D + V+QH+ L TV +N+ + G + E K
Sbjct: 61 FHGEDVSQH---DVRDRNVGFVFQHYALFRHMTVFDNVAFGLRMKPKGERPG--ESAIKA 115
Query: 123 KMREVGFEVPLNEIV----EDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
K+ E+ V L+ + E L G +QR+ + +AL + KIL+LDEP L KEL
Sbjct: 116 KVHELLNMVQLDWLADRYPEQLSGGQRQRIALARALAVEPKILLLDEPFGALDAKVRKEL 175
Query: 179 FKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+ L L E +T +F+TH +E E+ DR+ V+ +G + EV E
Sbjct: 176 RRWLARLHEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGSPGEVYE 226
Score = 81.9 bits (199), Expect = 1e-14
Identities = 56/222 (25%), Positives = 112/222 (50%), Gaps = 10/222 (4%)
Query: 264 KDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKL 323
K+ A+ ++ +++ GE++ + G G G+ L +AG+ P+ G I G+DV++
Sbjct: 10 KNFNAFKALDDINLDIQSGELVALLGPSGCGKTTLLRIIAGLETPDAGNIVFHGEDVSQH 69
Query: 324 PAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKA-NEMTNEVVE 382
+R G + + L M V +NV R+ KG + A +E++
Sbjct: 70 DVRDR-NVGFVF----QHYALFRHMTVFDNVAFG--LRMKPKGERPGESAIKAKVHELLN 122
Query: 383 KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLK 442
++ + + P + LSGG +Q++ + R + EPK++++ EP LD + +R+ L +
Sbjct: 123 MVQLDWLADRYP-EQLSGGQRQRIALARALAVEPKILLLDEPFGALDAKVRKELRRWLAR 181
Query: 443 LRDE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
L +E + ++ D +E ++++DR+ V+ +G I IG E
Sbjct: 182 LHEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGSPGE 223
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 106 bits (263), Expect = 5e-22
Identities = 76/233 (32%), Positives = 122/233 (51%), Gaps = 28/233 (12%)
Query: 6 MSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFG 65
+ + + P V AL V++++ +GE+ G++GE+G+GK+TL ++L KPT G + G
Sbjct: 24 LESLAREPPIYVRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMG 83
Query: 66 KEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMR 125
EV+ + + +R+ I MV+Q+ M SINP +K+ D+ + A ++ R
Sbjct: 84 MEVN-DRNINHVRKHIHMVFQN---------------PMTSINPRMKVKDIVREAMKEKR 127
Query: 126 EVGFEVPLNEI-----------VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIE 174
E + L E+ +L G QRV I +AL LILDEPTS L
Sbjct: 128 EERVKKLLEEVGLDYNYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASV 187
Query: 175 VKELFKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEV 226
++ L +L KER +T +FITH + + I+DRV ++ G++V T EV
Sbjct: 188 QAQILNLLVDLQKERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEV 240
Score = 86.2 bits (210), Expect = 7e-16
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+ VS E+R+GE+LG+ G G+G+ L + LA + P G + +G +V
Sbjct: 37 ALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMGMEV---------- 86
Query: 331 SGLAYVPDSRRVGLV-LDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKF--EVL 387
+ R + V +++V +T+++ + I + E E V+K EV
Sbjct: 87 -------NDRNINHVRKHIHMVFQNPMTSINPRMKVKDIVREAMKEKREERVKKLLEEVG 139
Query: 388 LSSTKAPIKH---LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLR 444
L K+ LSGG Q+V + R + +EP +++ EPT LD I L+ L+
Sbjct: 140 LDYNYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQ 199
Query: 445 DERK-GILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
ERK L I+ ++ +SDRV ++Y GKI+ G T+E E +
Sbjct: 200 KERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPM 245
>pir||C71081 probable resistance ATP-binding protein - Pyrococcus horikoshii
>gi|3257326|dbj|BAA30009.1| (AP000004) 324aa long
hypothetical resistance ATP-binding protein [Pyrococcus
horikoshii]
Length = 324
Score = 106 bits (263), Expect = 5e-22
Identities = 68/227 (29%), Positives = 123/227 (53%), Gaps = 6/227 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+ + +VK Y D A+RG++ KV GEI LG NGAGK+T + +L +KPT G
Sbjct: 6 AIIVENLVKKYGD-FEAVRGISFKVRRGEIFAFLGPNGAGKTTTVHMLTTLLKPTSGRAI 64
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V G +V +R+ I +V+Q ++ T EN+Y+ G+K +++K +E
Sbjct: 65 VAGHDVVKES--REVRKKIGVVFQDPSVDRELTAWENMYIHGRIY--GLKGQELKKKIEE 120
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
++ V + V+ G+Q+R+EI +AL+ ++L LDEPT L P +++ +
Sbjct: 121 LLKFVELWEFKDRQVKYFSGGMQRRLEIARALIHEPEVLFLDEPTIGLDPQTRAHIWEYI 180
Query: 183 RNLK-ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSE 228
+ +K E +T+ TH + E +++ DR+ ++ G+++ E+ +
Sbjct: 181 KTMKEEHDMTIFLTTHYMDEAEQLADRIAIIDHGKIIAEGTAEELKK 227
Score = 102 bits (253), Expect = 7e-21
Identities = 75/235 (31%), Positives = 120/235 (50%), Gaps = 18/235 (7%)
Query: 258 VEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLG 317
VE+L VK +AV+G+SF++R GEI G G G+ L + P G+ + G
Sbjct: 9 VENL-VKKYGDFEAVRGISFKVRRGEIFAFLGPNGAGKTTTVHMLTTLLKPTSGRAIVAG 67
Query: 318 KDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMT 377
DV K R K G+ + S + ++ EN+ + GRI K E+
Sbjct: 68 HDVVKESREVRKKIGVVFQDPS----VDRELTAWENMYI--------HGRIYGLKGQELK 115
Query: 378 NEVVE--KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEF 435
++ E KF L +K+ SGG Q+++ + R +I EP+V+ + EPT GLD
Sbjct: 116 KKIEELLKFVELWEFKDRQVKYFSGGMQRRLEIARALIHEPEVLFLDEPTIGLDPQTRAH 175
Query: 436 IRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKL 489
I + + +++E + ++T +DE QL+DR+A+I GKI++ G EE L+KL
Sbjct: 176 IWEYIKTMKEEHDMTIFLTTHYMDEAEQLADRIAIIDHGKIIAEGTAEE--LKKL 228
>pir||G72290 branched chain amino acid ABC transporter, ATP-binding protein -
Thermotoga maritima (strain MSB8)
>gi|4981686|gb|AAD36215.1|AE001771_8 (AE001771) branched
chain amino acid ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 239
Score = 106 bits (263), Expect = 5e-22
Identities = 73/230 (31%), Positives = 123/230 (52%), Gaps = 18/230 (7%)
Query: 12 VYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFN 71
VY + A++G++LKV G+I L+G NGAGK+T + + G ++ KG+I G++++ N
Sbjct: 13 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT-N 71
Query: 72 GPWDAI-REGIAMVYQHFTLVPTFTVLENLYLAMLS--INPGIK-----ISDVEKLAKEK 123
P I R GIA+V + + P TV ENL + + GIK I + KE+
Sbjct: 72 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER 131
Query: 124 MREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLR 183
++++G L G QQ + I +ALM K+L++DEP+ L PI V E+F+ ++
Sbjct: 132 LKQLG---------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 182
Query: 184 NLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR 233
+ + G T++ + ++ VL G++V K SE+ + E+ R
Sbjct: 183 KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVR 232
Score = 95.2 bits (233), Expect = 1e-18
Identities = 67/233 (28%), Positives = 117/233 (49%), Gaps = 17/233 (7%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+L+V+ L V + A+KG+ ++ G+I+ + G G G+ A+AG+ +KGKI
Sbjct: 5 VLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 63
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
G+D+T PAH + G+A VP+ RR+ ++ V EN+++ +R K
Sbjct: 64 FNGQDITNKPAHVINRMGIALVPEGRRI--FPELTVYENLMMGAYNR----------KDK 111
Query: 375 EMTNEVVEKFEVLLSSTKAPIKH----LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDI 430
E +E L K +K LSGG QQ + +GR ++ PK++++ EP+ GL
Sbjct: 112 EGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP 171
Query: 431 GATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + + K+ E ILL+ + L+++ V+ G+I+ GK E
Sbjct: 172 ILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 224
>pir||D72257 hypothetical protein TM1403 - Thermotoga maritima (strain MSB8)
>gi|4981967|gb|AAD36474.1|AE001793_4 (AE001793)
antibiotic ABC transporter, ATP-binding protein,
putative [Thermotoga maritima]
Length = 327
Score = 106 bits (263), Expect = 5e-22
Identities = 74/232 (31%), Positives = 118/232 (49%), Gaps = 16/232 (6%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
I+ VE+L VK +AVKGVSF +++GEI G G G+ L + P GK
Sbjct: 4 IIVVENL-VKKFGDFEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAW 62
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
+ G DV K P R K G+ + S L ++ EN+ + G+I
Sbjct: 63 VAGHDVLKEPREVRRKIGIVFQDQS----LDRELTAYENMYI--------HGKIYGYGGE 110
Query: 375 EMTNEVVE--KFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGA 432
++ ++E +F LL P+K SGG +++ + R +I EP+V+ + EPT GLD
Sbjct: 111 KLKKRILELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHT 170
Query: 433 TEFIRKTLLKLRDERKGILLISTD-LDEILQLSDRVAVIYEGKIMSIGKTEE 483
+ + + K++ E + ++T +DE QL+DRVA+I GKI+++G E
Sbjct: 171 RAHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTE 222
Score = 98.7 bits (242), Expect = 1e-19
Identities = 75/244 (30%), Positives = 131/244 (52%), Gaps = 22/244 (9%)
Query: 4 VEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV 63
+ + +VK + D A++GV+ V++GEI LG NGAGK+T + +L +KPT G+ V
Sbjct: 5 IVVENLVKKFGD-FEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWV 63
Query: 64 FGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEK 123
G +V P + +R I +V+Q +L T EN+Y I+ I EKL K
Sbjct: 64 AGHDV-LKEPRE-VRRKIGIVFQDQSLDRELTAYENMY-----IHGKIYGYGGEKLKKRI 116
Query: 124 MREVGFEVPLNEIVEDLPV-----GIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKEL 178
+ + F V L E +D PV G+ +R+EI ++L+ ++L LDEPT L P +
Sbjct: 117 LELLEF-VELLEF-KDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHM 174
Query: 179 FKTLRNL-KERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELARMMVQ 237
++ + + KE +T+ TH + E +++ DRV ++ G+++ +E+ + MV
Sbjct: 175 WEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTEL------KRMVG 228
Query: 238 RDVV 241
++++
Sbjct: 229 KEII 232
>pir||G72543 probable ABC transporter ATP-binding protein APE1635 - Aeropyrum
pernix (strain K1) >gi|5105323|dbj|BAA80636.1|
(AP000062) 354aa long hypothetical ABC transporter
ATP-binding protein [Aeropyrum pernix]
Length = 354
Score = 106 bits (263), Expect = 5e-22
Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 23/238 (9%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
+ V + GIVK + VAL+G++L++++GE LLG +G GK+T +RI+ G +P G
Sbjct: 3 VAGVRLEGIVKRFGK-TVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGR 61
Query: 61 IKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLA 120
+ G++V+ P D +AMV+Q + L P V +N+ + ++KL
Sbjct: 62 VYFDGRDVTGLPPKD---RNVAMVFQSYALWPHMRVFDNIAFPL----------KIKKLP 108
Query: 121 KEK-MREVGFEVPLNEI-------VEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTP 172
+++ +R V + L EI L G QQRV + +A++ ++L++DEP S L
Sbjct: 109 RDEIVRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDA 168
Query: 173 IEVKELFKTLRNLKER-GITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER 229
I ++ ++ L+ R G+T+I++TH E I DR+ V+ GE+ S+V R
Sbjct: 169 ILRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHR 226
Score = 83.9 bits (204), Expect = 4e-15
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
A+KG+ E+++GE + + G G G+ +AG+ P+ G++ G+DVT LP
Sbjct: 20 ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLP------ 73
Query: 331 SGLAYVPDSRRVGLVLDMNVV--ENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLL 388
P R V +V + V N++ L ++ D+ E E+
Sbjct: 74 ------PKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEIDH 127
Query: 389 SSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERK 448
+ P LSGG QQ+V V R I+ EP+V+++ EP LD +R + KL+ R
Sbjct: 128 LLDRYP-HQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQ-RRL 185
Query: 449 GILLISTDLDEI--LQLSDRVAVIYEGKIMSIG 479
G+ +I D++ + + DR+ V+ G+I +G
Sbjct: 186 GVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVG 218
>pir||D72484 probable ATP-binding protein APE2516 - Aeropyrum pernix (strain
K1) >gi|5106221|dbj|BAA81532.1| (AP000064) 323aa long
hypothetical ATP-binding protein [Aeropyrum pernix]
Length = 323
Score = 106 bits (263), Expect = 5e-22
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 3 AVEMSGIVKVYPDGVV--------ALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEI 54
AVE +VK Y G++ AL GV+LKV G + LLG NGAGK+TL++IL +
Sbjct: 4 AVEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLL 63
Query: 55 KPTKGEIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKIS 114
P G +V G +V R G+ + + L + +NL+ S GI
Sbjct: 64 LPDSGWARVAGFDVVREANNVRSRIGVVLGGER-ALYWRLSGWDNLWF--FSQLYGIPPR 120
Query: 115 DVEKLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIE 174
+ ++ KE + VG E + VE+ G++QR+ I + L+ + ++L+LDEPT L P
Sbjct: 121 EAKRRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKA 180
Query: 175 VKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+E+ +R + G TV+ TH + E +E++DRV ++ +G +V
Sbjct: 181 AREVRSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISKGRIV 224
Score = 78.0 bits (189), Expect = 2e-13
Identities = 60/231 (25%), Positives = 111/231 (47%), Gaps = 18/231 (7%)
Query: 267 RGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAH 326
R + A+ GV ++ G + + G G G+ L + L+ + +P+ G + G DV + +
Sbjct: 24 RTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANN 83
Query: 327 ERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEV 386
R R+G+VL L+ + ++ E V E E+
Sbjct: 84 VR-----------SRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEI 132
Query: 387 --LLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLR 444
L +++ S G +Q++ + R +I +P+V+++ EPT GLD A +R + ++
Sbjct: 133 VGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIV 192
Query: 445 DERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLGLLMGG 495
E + +LL + + E +LSDRVA+I +G+I++ G E+ L L+GG
Sbjct: 193 REGRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPED-----LKSLVGG 238
>pir||B82536 ABC transporter ATP-binding protein XF2617 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107842|gb|AAF85414.1|AE004068_10 (AE004068) ABC
transporter ATP-binding protein [Xylella fastidiosa]
Length = 623
Score = 106 bits (263), Expect = 5e-22
Identities = 122/510 (23%), Positives = 215/510 (41%), Gaps = 98/510 (19%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKV--------FGKE 67
G + L L +E+GE L+G NGAGKSTLMR++ GE+ P GEI++ +E
Sbjct: 15 GPLLLEKAALSIEQGERIALIGRNGAGKSTLMRLITGELHPDSGEIRIQQGMRVTRLEQE 74
Query: 68 V---SFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYL-AMLSINPGIKISDVEKLAKEK 123
V +D + G+ + + E L A+ + I SD L ++
Sbjct: 75 VPQDMSGSVFDVVAAGLGQPGRWLAEFHQLSHAEVLDTEALAQVQSRIDASDAWSL-DQR 133
Query: 124 MREVGFEVPLNEIVE--DLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
+ EV + LN E L G+++RV + AL+ +L+LDEPT+ L + L
Sbjct: 134 VTEVLTRLELNGEAEFASLSGGMKRRVLLASALVSLPHLLLLDEPTNHLDTEAIDWLESF 193
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV----------------------- 218
L+ +V+FITH + ++ + R+ + RG V
Sbjct: 194 LKGWNG---SVLFITHDRRFLRALATRIVEIDRGHVTSWPGNWDNYERRREERLNLEAQQ 250
Query: 219 ---------------------------GTVKTSEVSERE-LARMMVQRDVVMEISKGKST 250
G V+ + E L R + +V +E+++G+ +
Sbjct: 251 QARFDKLLAQEEVWIRQGIKARRTRDEGRVRRLKAMRMERLQRRELSGNVQLEVAQGEFS 310
Query: 251 PGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEK 310
G +++ ++L + V+ VS + G+ +G+ G G+G+ L + L G +P+
Sbjct: 311 -GKKVIEAKNLCFAFGQ-RTIVRDVSTTILRGDRIGLIGPNGSGKTTLLKLLLGELLPQA 368
Query: 311 GKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR--I 368
G++ ++ H + +AY D R L D N +ENV +G I
Sbjct: 369 GEV--------RMGTHLQ----IAYF-DQYRATLREDWNAIENVA---------EGADFI 406
Query: 369 SWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGL 428
+ + ++ F +API LSGG + ++++ + + V+V+ EPT L
Sbjct: 407 DLNGKRKHLYAYLQDFLFTPERARAPITRLSGGERNRLLLAKLFAQPSNVLVMDEPTNDL 466
Query: 429 DIGATEFIRKTLLKLRDERKGILLISTDLD 458
D+ E + + L + +LL+S D D
Sbjct: 467 DVETLELLEELLTNYKGT---LLLVSHDRD 493
>pir||B64816 ABC-type transport protein ybhF - Escherichia coli
>gi|1787012|gb|AAC73881.1| (AE000181) putative
ATP-binding component of a transport system [Escherichia
coli K12] >gi|4062352|dbj|BAA35454.1| (D90716) ATP
binding cassette transporter ABC2 [Escherichia coli]
Length = 583
Score = 106 bits (262), Expect = 6e-22
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 6/219 (2%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T +E + K + D A VN V+ GEI GLLG NGAGKST +++ G + PT G+
Sbjct: 333 TVIEAKELTKKFGD-FAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQA 391
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
V G ++ + R+ + + Q F+L TV +NL S G++ +
Sbjct: 392 LVLGMDLKESS--GKARQHLGYMAQKFSLYGNLTVEQNL--RFFSGVYGLRGRAQNEKIS 447
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
G + + ++LP+G +QR+ + +LM IL LDEPTS + P+ +E +
Sbjct: 448 RMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLH 507
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT 220
+ ++ E+G+TV+ TH + E E DR+ ++ RG+++ +
Sbjct: 508 INSMVEKGVTVMVTTHFMDEA-EYCDRIGLVYRGKLIAS 545
Score = 80.0 bits (194), Expect = 6e-14
Identities = 61/219 (27%), Positives = 110/219 (49%), Gaps = 12/219 (5%)
Query: 4 VEMSGIVKVYPD-GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
+ ++G+ K +P A+ ++ + G + GL+G +GAGK+TLMR+L G +KP G
Sbjct: 11 ITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSAT 70
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLE--NLYLAMLSINPGIKISDVEKLA 120
V G + N A+ + + Q F L TV+E NLY + S+ + K
Sbjct: 71 VIGFDPIKND--GALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVT-----GEARKQT 123
Query: 121 KEKMREVGFEVPL-NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
++ E P + L G++Q++ + L+ K+L+LDEP + PI +EL+
Sbjct: 124 FARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELW 183
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ + L G+ +++ T L E ++ D V ++ GE++
Sbjct: 184 QMVHELAGEGMLILWSTSYLDEAEQCRD-VLLMNEGELL 221
Score = 70.2 bits (169), Expect = 5e-11
Identities = 53/237 (22%), Positives = 115/237 (48%), Gaps = 14/237 (5%)
Query: 248 KSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRI 307
+ TPG T+++ ++L K A V+F ++ GEI G+ G G G+ + + G+ +
Sbjct: 327 EGTPGETVIEAKEL-TKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLV 385
Query: 308 PEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR 367
P G+ +LG D+ + R G +++ L ++ V +N+ + L +GR
Sbjct: 386 PTSGQALVLGMDLKESSGKARQHLGYM----AQKFSLYGNLTVEQNLRFFSGVYGL-RGR 440
Query: 368 ISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQG 427
+K + M+ K ++ + P+ G +Q++ + ++ EP ++ + EPT G
Sbjct: 441 AQNEKISRMSEAFGLKSIASHATDELPL-----GFKQRLALACSLMHEPDILFLDEPTSG 495
Query: 428 LD-IGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+D + EF + E+ ++++T + + DR+ ++Y GK+++ G ++
Sbjct: 496 VDPLTRREFWLH--INSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDD 550
>sp|P75776|YBHF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBHF
Length = 578
Score = 106 bits (262), Expect = 6e-22
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 6/219 (2%)
Query: 2 TAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEI 61
T +E + K + D A VN V+ GEI GLLG NGAGKST +++ G + PT G+
Sbjct: 328 TVIEAKELTKKFGD-FAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQA 386
Query: 62 KVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAK 121
V G ++ + R+ + + Q F+L TV +NL S G++ +
Sbjct: 387 LVLGMDLKESS--GKARQHLGYMAQKFSLYGNLTVEQNL--RFFSGVYGLRGRAQNEKIS 442
Query: 122 EKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKT 181
G + + ++LP+G +QR+ + +LM IL LDEPTS + P+ +E +
Sbjct: 443 RMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLH 502
Query: 182 LRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGT 220
+ ++ E+G+TV+ TH + E E DR+ ++ RG+++ +
Sbjct: 503 INSMVEKGVTVMVTTHFMDEA-EYCDRIGLVYRGKLIAS 540
Score = 80.0 bits (194), Expect = 6e-14
Identities = 61/219 (27%), Positives = 110/219 (49%), Gaps = 12/219 (5%)
Query: 4 VEMSGIVKVYPD-GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
+ ++G+ K +P A+ ++ + G + GL+G +GAGK+TLMR+L G +KP G
Sbjct: 6 ITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSAT 65
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLE--NLYLAMLSINPGIKISDVEKLA 120
V G + N A+ + + Q F L TV+E NLY + S+ + K
Sbjct: 66 VIGFDPIKND--GALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVT-----GEARKQT 118
Query: 121 KEKMREVGFEVPL-NEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELF 179
++ E P + L G++Q++ + L+ K+L+LDEP + PI +EL+
Sbjct: 119 FARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELW 178
Query: 180 KTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVV 218
+ + L G+ +++ T L E ++ D V ++ GE++
Sbjct: 179 QMVHELAGEGMLILWSTSYLDEAEQCRD-VLLMNEGELL 216
Score = 70.2 bits (169), Expect = 5e-11
Identities = 53/237 (22%), Positives = 115/237 (48%), Gaps = 14/237 (5%)
Query: 248 KSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRI 307
+ TPG T+++ ++L K A V+F ++ GEI G+ G G G+ + + G+ +
Sbjct: 322 EGTPGETVIEAKEL-TKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLV 380
Query: 308 PEKGKIELLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGR 367
P G+ +LG D+ + R G +++ L ++ V +N+ + L +GR
Sbjct: 381 PTSGQALVLGMDLKESSGKARQHLGYM----AQKFSLYGNLTVEQNLRFFSGVYGL-RGR 435
Query: 368 ISWDKANEMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQG 427
+K + M+ K ++ + P+ G +Q++ + ++ EP ++ + EPT G
Sbjct: 436 AQNEKISRMSEAFGLKSIASHATDELPL-----GFKQRLALACSLMHEPDILFLDEPTSG 490
Query: 428 LD-IGATEFIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
+D + EF + E+ ++++T + + DR+ ++Y GK+++ G ++
Sbjct: 491 VDPLTRREFWLH--INSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDD 545
>gi|7304849 ATP-binding cassette 1, sub-family A, member 1 [Mus musculus]
>gi|728773|sp|P41233|ABC1_MOUSE ATP-BINDING CASSETTE,
SUB-FAMILY A, MEMBER 1 (ATP-BINDING CASSETTE TRANSPORTER
1) (ATP-BINDING CASSETTE 1) (ABC-1)
>gi|1082238|pir||A54774 ATP binding cassette transporter
ABC1 - mouse >gi|495257|emb|CAA53530.1| (X75926) abc1
[Mus musculus]
Length = 2201
Score = 106 bits (261), Expect = 8e-22
Identities = 79/270 (29%), Positives = 138/270 (50%), Gaps = 25/270 (9%)
Query: 4 VEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
V + +VKVY DG+ VA+ G+ L EG+I LG NGAGK+T M IL G PT G
Sbjct: 839 VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 898
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEKLA 120
+ GK++ +IR+ + + QH L TV E++ Y + ++ EK
Sbjct: 899 ILGKDI--RSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLS--------EKHV 948
Query: 121 KEKMREVGFEV-----PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K +M ++ +V L L G+Q+++ + A + +K++ILDEPT+ + P
Sbjct: 949 KAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSR 1008
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR-- 233
+ +++ L ++ G T+I TH + E + DR+ ++ G++ V +S + +L
Sbjct: 1009 RGIWELLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLC-CVGSSLFLKNQLGTGY 1066
Query: 234 --MMVQRDVVMEISKGKSTPGN-TILKVED 260
+V++DV +S +++ + LK ED
Sbjct: 1067 YLTLVKKDVESSLSSCRNSSSTVSCLKKED 1096
Score = 74.1 bits (179), Expect = 3e-12
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 10/211 (4%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV G++ EG+I G G G+ L G+ P G +LGKD+ + R
Sbjct: 855 AVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSSIRQN 914
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
G+ + ++ DM VE + +R+ KG EM ++ + S
Sbjct: 915 LGVC-----PQHNVLFDMLTVEEHIWF-YARL--KGLSEKHVKAEMEQMALD-VGLPPSK 965
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
K+ LSGG Q+K+ V + KV+++ EPT G+D + I + LLK R R I
Sbjct: 966 LKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRT-I 1024
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
+L + +DE L DR+A+I GK+ +G +
Sbjct: 1025 ILSTHHMDEADILGDRIAIISHGKLCCVGSS 1055
>gb|AAB01532.1| (U38418) ProV [Bacillus subtilis]
Length = 404
Score = 106 bits (261), Expect = 8e-22
Identities = 91/364 (25%), Positives = 176/364 (48%), Gaps = 36/364 (9%)
Query: 16 GVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWD 75
G A+ VNLK+ +GE +G +G GK+T M+++ I+P+ G+I + G+ + P +
Sbjct: 15 GKKAVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSAGKIFIDGENIMEQDP-E 73
Query: 76 AIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMRE------VGF 129
+R I V+Q L P T+ +N +S+ P + + E+ KE+ RE +G
Sbjct: 74 ELRRKIGYVFQQIGLFPHMTIQQN-----ISLVPKL-LKWPEQHRKERARELLKLVDMGP 127
Query: 130 EVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPI---EVKELFKTLRNLK 186
E L+ +L G QQR+ +++AL ++++DEP L PI ++E FK L+
Sbjct: 128 EY-LDRYPHELSGGQQQRIGVLRALAREPPLILMDEPFGALDPITRDSLQEEFKKLQKTL 186
Query: 187 ERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER---ELARMMVQRDVVME 243
+ T++F+TH + E ++ DR+ +L+ GE+V ++ E + ++ +++
Sbjct: 187 HK--TIVFVTHDMDEAIKLADRIVILKAGEIVQVGTPDDILRNPADEFVEEFIGKERLIQ 244
Query: 244 ISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAG---VQGNGQRELAE 300
S + I+ + + + D+ L + + R +L + G +QG E+ +
Sbjct: 245 SSSPDVERVDQIMNTKPVTITADKTLSEAIQLMRQERVDSLLVVDGEHVLQGYVDVEIID 304
Query: 301 A------LAGIRIPEKGKIELLGKDVTKLPAHERYKSGLAYVP----DSRRVGLVLDMNV 350
L G + + +LG + + + K G+ YVP + R +G+V ++
Sbjct: 305 QCRKKANLVG-EVLHEDLYTVLGGTLLRDTVRKILKRGIKYVPVVDGNRRLIGIVTRASL 363
Query: 351 VENV 354
V+ V
Sbjct: 364 VDIV 367
Score = 77.6 bits (188), Expect = 3e-13
Identities = 55/220 (25%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 268 GLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHE 327
G AV V+ ++ +GE + G G G+ + + + P GKI + G+++ + E
Sbjct: 15 GKKAVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSAGKIFIDGENIMEQDPEE 74
Query: 328 -RYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN--EMTNEVVEKF 384
R K G + +++GL M + +N+ L + W + + E E+++
Sbjct: 75 LRRKIGYVF----QQIGLFPHMTIQQNISLV-------PKLLKWPEQHRKERARELLKLV 123
Query: 385 EVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLR 444
++ LSGG QQ++ V R + REP +I++ EP LD + +++ KL+
Sbjct: 124 DMGPEYLDRYPHELSGGQQQRIGVLRALAREPPLILMDEPFGALDPITRDSLQEEFKKLQ 183
Query: 445 DE-RKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
K I+ ++ D+DE ++L+DR+ ++ G+I+ +G ++
Sbjct: 184 KTLHKTIVFVTHDMDEAIKLADRIVILKAGEIVQVGTPDD 223
>gi|5915658 ATP-binding cassette, sub-family A member 1; ATP-binding cassette 1;
high density lipoprotein deficiency, Tangier type, 1;
cholesterol efflux regulatory protein [Homo sapiens]
>gi|8927983|sp|O95477|ABC1_HUMAN ATP-BINDING CASSETTE,
SUB-FAMILY A, MEMBER 1 (ATP-BINDING CASSETTE TRANSPORTER
1) (ATP-BINDING CASSETTE 1) (ABC-1) (CHOLESTEROL EFFLUX
REGULATORY PROTEIN) >gi|4128033|emb|CAA10005.1|
(AJ012376) ATP-binding cassette transporter-1 (ABC-1)
[Homo sapiens] >gi|5734101|gb|AAD49849.1|AF165281_1
(AF165281) ATP cassette binding transporter 1 [Homo
sapiens]
Length = 2201
Score = 106 bits (261), Expect = 8e-22
Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 25/270 (9%)
Query: 4 VEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
V + +VKVY DG+ VA+ G+ L EG+I LG NGAGK+T M IL G PT G
Sbjct: 839 VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 898
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEKLA 120
+ GK++ IR+ + + QH L TV E++ Y + ++ EK
Sbjct: 899 ILGKDI--RSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLS--------EKHV 948
Query: 121 KEKMREVGFEV-----PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K +M ++ +V L L G+Q+++ + A + +K++ILDEPT+ + P
Sbjct: 949 KAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSR 1008
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR-- 233
+ +++ L ++ G T+I TH + E + DR+ ++ G++ V +S + +L
Sbjct: 1009 RGIWELLLKYRQ-GRTIILSTHHMDEADVLGDRIAIISHGKLC-CVGSSLFLKNQLGTGY 1066
Query: 234 --MMVQRDVVMEISKGKSTPGN-TILKVED 260
+V++DV +S +++ + LK ED
Sbjct: 1067 YLTLVKKDVESSLSSCRNSSSTVSYLKKED 1096
Score = 74.9 bits (181), Expect = 2e-12
Identities = 62/214 (28%), Positives = 98/214 (44%), Gaps = 16/214 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV G++ EG+I G G G+ L G+ P G +LGKD+ + R
Sbjct: 855 AVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQN 914
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK-FEVLLS 389
G+ + ++ DM VE + R+ + E+ + +V L
Sbjct: 915 LGVC-----PQHNVLFDMLTVEE-------HIWFYARLKGLSEKHVKAEMEQMALDVGLP 962
Query: 390 STKAPIK--HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S+K K LSGG Q+K+ V + KV+++ EPT G+D + I + LLK R R
Sbjct: 963 SSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGR 1022
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
I+L + +DE L DR+A+I GK+ +G +
Sbjct: 1023 T-IILSTHHMDEADVLGDRIAIISHGKLCCVGSS 1055
>gb|AAF86276.1|AF275948_1 (AF275948) ABCA1 [Homo sapiens]
Length = 2261
Score = 106 bits (261), Expect = 8e-22
Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 25/270 (9%)
Query: 4 VEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
V + +VKVY DG+ VA+ G+ L EG+I LG NGAGK+T M IL G PT G
Sbjct: 899 VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 958
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEKLA 120
+ GK++ IR+ + + QH L TV E++ Y + ++ EK
Sbjct: 959 ILGKDI--RSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLS--------EKHV 1008
Query: 121 KEKMREVGFEV-----PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K +M ++ +V L L G+Q+++ + A + +K++ILDEPT+ + P
Sbjct: 1009 KAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSR 1068
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR-- 233
+ +++ L ++ G T+I TH + E + DR+ ++ G++ V +S + +L
Sbjct: 1069 RGIWELLLKYRQ-GRTIILSTHHMDEADVLGDRIAIISHGKLC-CVGSSLFLKNQLGTGY 1126
Query: 234 --MMVQRDVVMEISKGKSTPGN-TILKVED 260
+V++DV +S +++ + LK ED
Sbjct: 1127 YLTLVKKDVESSLSSCRNSSSTVSYLKKED 1156
Score = 74.9 bits (181), Expect = 2e-12
Identities = 62/214 (28%), Positives = 98/214 (44%), Gaps = 16/214 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV G++ EG+I G G G+ L G+ P G +LGKD+ + R
Sbjct: 915 AVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQN 974
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK-FEVLLS 389
G+ + ++ DM VE + R+ + E+ + +V L
Sbjct: 975 LGVC-----PQHNVLFDMLTVEE-------HIWFYARLKGLSEKHVKAEMEQMALDVGLP 1022
Query: 390 STKAPIK--HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S+K K LSGG Q+K+ V + KV+++ EPT G+D + I + LLK R R
Sbjct: 1023 SSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGR 1082
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
I+L + +DE L DR+A+I GK+ +G +
Sbjct: 1083 T-IILSTHHMDEADVLGDRIAIISHGKLCCVGSS 1115
>gb|AAF98175.1|AF285167_1 (AF285167) ATP-binding cassette transporter 1 [Homo sapiens]
Length = 2261
Score = 106 bits (261), Expect = 8e-22
Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 25/270 (9%)
Query: 4 VEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
V + +VKVY DG+ VA+ G+ L EG+I LG NGAGK+T M IL G PT G
Sbjct: 899 VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 958
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEKLA 120
+ GK++ IR+ + + QH L TV E++ Y + ++ EK
Sbjct: 959 ILGKDI--RSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLS--------EKHV 1008
Query: 121 KEKMREVGFEV-----PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K +M ++ +V L L G+Q+++ + A + +K++ILDEPT+ + P
Sbjct: 1009 KAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSR 1068
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR-- 233
+ +++ L ++ G T+I TH + E + DR+ ++ G++ V +S + +L
Sbjct: 1069 RGIWELLLKYRQ-GRTIILSTHHMDEADVLGDRIAIISHGKLC-CVGSSLFLKNQLGTGY 1126
Query: 234 --MMVQRDVVMEISKGKSTPGN-TILKVED 260
+V++DV +S +++ + LK ED
Sbjct: 1127 YLTLVKKDVESSLSSCRNSSSTVSYLKKED 1156
Score = 74.9 bits (181), Expect = 2e-12
Identities = 62/214 (28%), Positives = 98/214 (44%), Gaps = 16/214 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV G++ EG+I G G G+ L G+ P G +LGKD+ + R
Sbjct: 915 AVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQN 974
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK-FEVLLS 389
G+ + ++ DM VE + R+ + E+ + +V L
Sbjct: 975 LGVC-----PQHNVLFDMLTVEE-------HIWFYARLKGLSEKHVKAEMEQMALDVGLP 1022
Query: 390 STKAPIK--HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S+K K LSGG Q+K+ V + KV+++ EPT G+D + I + LLK R R
Sbjct: 1023 SSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGR 1082
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
I+L + +DE L DR+A+I GK+ +G +
Sbjct: 1083 T-IILSTHHMDEADVLGDRIAIISHGKLCCVGSS 1115
>pir||D83281 histidine transport protein HisP PA2926 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949020|gb|AAG06314.1|AE004718_11 (AE004718)
histidine transport protein HisP [Pseudomonas
aeruginosa]
Length = 255
Score = 106 bits (261), Expect = 8e-22
Identities = 74/234 (31%), Positives = 123/234 (51%), Gaps = 23/234 (9%)
Query: 1 MTAVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGE 60
M ++++ I K Y V LRGV+L+ +G++ ++G +G+GKST +R + KP G
Sbjct: 1 MYSLQVEDIHKRYGSHEV-LRGVSLRAGKGDVISIIGSSGSGKSTFLRCVNFLEKPCAGH 59
Query: 61 IKVFGKEVSFNG------------PWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSIN 108
I+V +E+ IR +AMV+QHF L TVLEN+ +++
Sbjct: 60 IRVGDEELRTRPGALGELRAADPRQLQRIRSRLAMVFQHFNLWSHLTVLENVVECPVNVL 119
Query: 109 PGIKISDVEKLAKEKMREVGFEVPLNEIVE-----DLPVGIQQRVEIIKALMLNAKILIL 163
+ D A+ + +VG L E VE +L G QQRV I +AL + ++++
Sbjct: 120 R-MNRDDAVARARHYLAKVG----LAEKVERQYPCELSGGQQQRVAIARALAMEPQVMLF 174
Query: 164 DEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEV 217
DEPTS L P V E+ K ++ L E G T++ +TH++ ++++ V L +G +
Sbjct: 175 DEPTSALDPELVGEVLKVMQQLAEEGRTMVLVTHEMAFARQVSSHVIFLHQGVI 228
>gi|11429275 ATP-binding cassette, sub-family A member 1 [Homo sapiens]
Length = 2231
Score = 106 bits (261), Expect = 8e-22
Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 25/270 (9%)
Query: 4 VEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
V + +VKVY DG+ VA+ G+ L EG+I LG NGAGK+T M IL G PT G
Sbjct: 869 VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 928
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEKLA 120
+ GK++ IR+ + + QH L TV E++ Y + ++ EK
Sbjct: 929 ILGKDI--RSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLS--------EKHV 978
Query: 121 KEKMREVGFEV-----PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K +M ++ +V L L G+Q+++ + A + +K++ILDEPT+ + P
Sbjct: 979 KAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSR 1038
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR-- 233
+ +++ L ++ G T+I TH + E + DR+ ++ G++ V +S + +L
Sbjct: 1039 RGIWELLLKYRQ-GRTIILSTHHMDEADVLGDRIAIISHGKLC-CVGSSLFLKNQLGTGY 1096
Query: 234 --MMVQRDVVMEISKGKSTPGN-TILKVED 260
+V++DV +S +++ + LK ED
Sbjct: 1097 YLTLVKKDVESSLSSCRNSSSTVSYLKKED 1126
Score = 74.9 bits (181), Expect = 2e-12
Identities = 62/214 (28%), Positives = 98/214 (44%), Gaps = 16/214 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV G++ EG+I G G G+ L G+ P G +LGKD+ + R
Sbjct: 885 AVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQN 944
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEK-FEVLLS 389
G+ + ++ DM VE + R+ + E+ + +V L
Sbjct: 945 LGVC-----PQHNVLFDMLTVEE-------HIWFYARLKGLSEKHVKAEMEQMALDVGLP 992
Query: 390 STKAPIK--HLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDER 447
S+K K LSGG Q+K+ V + KV+++ EPT G+D + I + LLK R R
Sbjct: 993 SSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGR 1052
Query: 448 KGILLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
I+L + +DE L DR+A+I GK+ +G +
Sbjct: 1053 T-IILSTHHMDEADVLGDRIAIISHGKLCCVGSS 1085
>gb|AAG39073.1|AF287263_1 (AF287263) ATP-binding cassette 1, sub-family A, member 1 [Mus
musculus]
Length = 2198
Score = 106 bits (261), Expect = 8e-22
Identities = 79/270 (29%), Positives = 138/270 (50%), Gaps = 25/270 (9%)
Query: 4 VEMSGIVKVYPDGV-VALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
V + +VKVY DG+ VA+ G+ L EG+I LG NGAGK+T M IL G PT G
Sbjct: 839 VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 898
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENL--YLAMLSINPGIKISDVEKLA 120
+ GK++ +IR+ + + QH L TV E++ Y + ++ EK
Sbjct: 899 ILGKDI--RSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLS--------EKHV 948
Query: 121 KEKMREVGFEV-----PLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEV 175
K +M ++ +V L L G+Q+++ + A + +K++ILDEPT+ + P
Sbjct: 949 KAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSR 1008
Query: 176 KELFKTLRNLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERELAR-- 233
+ +++ L ++ G T+I TH + E + DR+ ++ G++ V +S + +L
Sbjct: 1009 RGIWELLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLC-CVGSSLFLKNQLGTGY 1066
Query: 234 --MMVQRDVVMEISKGKSTPGN-TILKVED 260
+V++DV +S +++ + LK ED
Sbjct: 1067 YLTLVKKDVESSLSSCRNSSSTVSCLKKED 1096
Score = 74.1 bits (179), Expect = 3e-12
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 10/211 (4%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV G++ EG+I G G G+ L G+ P G +LGKD+ + R
Sbjct: 855 AVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSSIRQN 914
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
G+ + ++ DM VE + +R+ KG EM ++ + S
Sbjct: 915 LGVC-----PQHNVLFDMLTVEEHIWF-YARL--KGLSEKHVKAEMEQMALD-VGLPPSK 965
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKGI 450
K+ LSGG Q+K+ V + KV+++ EPT G+D + I + LLK R R I
Sbjct: 966 LKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRT-I 1024
Query: 451 LLISTDLDEILQLSDRVAVIYEGKIMSIGKT 481
+L + +DE L DR+A+I GK+ +G +
Sbjct: 1025 ILSTHHMDEADILGDRIAIISHGKLCCVGSS 1055
>pir||B75076 daunorubicin resistance ATP-binding protein drra PAB1703 -
Pyrococcus abyssi (strain Orsay)
>gi|5458423|emb|CAB49911.1| (AJ248286) DAUNORUBICIN
RESISTANCE ATP-BINDING PROTEIN DRRA [Pyrococcus abyssi]
Length = 314
Score = 105 bits (260), Expect = 1e-21
Identities = 75/285 (26%), Positives = 148/285 (51%), Gaps = 20/285 (7%)
Query: 1 MTAVEMSGIVKVYPDG---VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPT 57
M +E+ + K +P V+A+ V+ GE+ G+LG NGAGK+T +R++ +P
Sbjct: 1 MPILEVKSVTKKFPTPKGEVIAVNNVSFSANSGEVLGILGPNGAGKTTTLRMIATIYRPD 60
Query: 58 KGEIKVFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVE 117
GE+ V G + N P + +R+ IA + Q L P +V + Y+ G D +
Sbjct: 61 SGEVLVDGIDAVKN-PLE-VRKRIAYMTQEPDLTPPLSVRD--YIIYYFRFRGFSKRDAK 116
Query: 118 KLAKEKMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKE 177
K ++ + G + ++ L G+++RV++ AL + ++ LDEPT+ + P ++
Sbjct: 117 KHCEDILELFGLKTHAHKKPFQLSTGLKRRVQLACALSSDVPLVFLDEPTAGVDPRSKRK 176
Query: 178 LFKTLR-NLKERGITVIFITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSER--ELARM 234
++ ++ L+++G+TVI +H L EV+ + DRV ++ +G++V E+ +R + R+
Sbjct: 177 TWELIKEKLEDKGVTVILTSHDLYEVEYLADRVIIMNQGKIVAEGSPKELKKRFGKTVRI 236
Query: 235 MVQRDVVMEISKGKSTPGNTILKVEDLWVKDDRGLDAVKGVSFEL 279
+++ + +LK E L VK+ + + + SF++
Sbjct: 237 VLEEPI----------KNFELLKEELLRVKNVKDVRLARDDSFDV 271
Score = 75.7 bits (183), Expect = 1e-12
Identities = 64/217 (29%), Positives = 111/217 (50%), Gaps = 17/217 (7%)
Query: 271 AVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYK 330
AV VSF GE+LGI G G G+ +A I P+ G++ + G D K P R +
Sbjct: 22 AVNNVSFSANSGEVLGILGPNGAGKTTTLRMIATIYRPDSGEVLVDGIDAVKNPLEVRKR 81
Query: 331 SGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSS 390
+AY+ ++ L ++V + ++ R K A + +++E F + +
Sbjct: 82 --IAYM--TQEPDLTPPLSVRDYIIYYFRFRGFSK-----RDAKKHCEDILELFGLKTHA 132
Query: 391 TKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKT--LLKLRDERK 448
K P + LS G +++V + + + ++ + EPT G+D + RKT L+K + E K
Sbjct: 133 HKKPFQ-LSTGLKRRVQLACALSSDVPLVFLDEPTAGVDPRSK---RKTWELIKEKLEDK 188
Query: 449 G--ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEE 483
G ++L S DL E+ L+DRV ++ +GKI++ G +E
Sbjct: 189 GVTVILTSHDLYEVEYLADRVIIMNQGKIVAEGSPKE 225
>pir||G75311 branched-chain amino acid ABC transporter, ATP-binding protein -
Deinococcus radiodurans (strain R1)
>gi|6459916|gb|AAF11668.1|AE002047_1 (AE002047)
branched-chain amino acid ABC transporter, ATP-binding
protein [Deinococcus radiodurans]
Length = 236
Score = 105 bits (260), Expect = 1e-21
Identities = 66/216 (30%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 17 VVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDA 76
+ A+RG++L+V+EGE+ L+G NGAGK+T +R + ++P G I+ G++++ P +A
Sbjct: 16 IQAVRGLSLEVQEGEVVTLIGANGAGKTTTLRAVSRMVRPVAGIIRFGGRDITRIPPDEA 75
Query: 77 IREGIAMVYQHFTLVPTFTVLENLYLA--MLSINPGIKISDVEKLAKEKMREVGFEVPLN 134
++ GIA + ++ ++ +NL L + S GI+ +D++++ ++ +G
Sbjct: 76 VKIGIAQSPEGRQVLARQSIQDNLELGAYVRSDRAGIQ-ADLQRMY-DRFPRLGER--RT 131
Query: 135 EIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIF 194
++ L G QQ + I +ALM K+L+LDEP+ L P+ V+E+F +R L E+G+T++
Sbjct: 132 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPLIVREIFTIIRELNEQGMTILL 191
Query: 195 ITHKLKEVKEITDRVTVLRRGEVVGTVKTSEVSERE 230
+ K + R VL G++ + +SE+ E
Sbjct: 192 VEQNAKLAMNASHRTYVLEAGQLTFSGVSSELVNDE 227
Score = 84.7 bits (206), Expect = 2e-15
Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 11/243 (4%)
Query: 255 ILKVEDLWVKDDRGLDAVKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIE 314
+L++E+L V + AV+G+S E++EGE++ + G G G+ A++ + P G I
Sbjct: 3 LLEIENLGVNYG-AIQAVRGLSLEVQEGEVVTLIGANGAGKTTTLRAVSRMVRPVAGIIR 61
Query: 315 LLGKDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKAN 374
G+D+T++P E K G+A P+ R+V + ++ +N+ L R G I D
Sbjct: 62 FGGRDITRIPPDEAVKIGIAQSPEGRQV--LARQSIQDNLELGAYVRSDRAG-IQAD--- 115
Query: 375 EMTNEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATE 434
+ ++F L LSGG QQ + + R ++ PK++++ EP+ GL
Sbjct: 116 --LQRMYDRFPRLGERRTQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPLIVR 173
Query: 435 FIRKTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEK--LGLL 492
I + +L ++ ILL+ + + S R V+ G++ G + E ++ L
Sbjct: 174 EIFTIIRELNEQGMTILLVEQNAKLAMNASHRTYVLEAGQLTFSGVSSELVNDERVLHAY 233
Query: 493 MGG 495
+GG
Sbjct: 234 LGG 236
>gb|AAC13363.1| (U75364) putative ABC transporter subunit [Rhodopseudomonas
palustris]
Length = 240
Score = 105 bits (259), Expect = 1e-21
Identities = 65/231 (28%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 265 DDRGLDA-------VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLG 317
D RG+D ++GV+F + GE + + G G G+ L L G+ P++G I L G
Sbjct: 10 DARGIDTFYGPSHILRGVNFHVGRGETVSLLGRNGMGKTTLLRTLMGLLKPKRGAILLDG 69
Query: 318 KDVTKLPAHERYKSGLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMT 377
+DVT+ A+ + ++G+ +VP+ R G+ +++V EN++ +R GRI W +
Sbjct: 70 RDVTEARANIKARAGMGFVPEGR--GIFPNLSVEENLLFA--ARPGPDGRIDWTQ----- 120
Query: 378 NEVVEKFEVLLSSTKAPIKHLSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIR 437
+ + F L + LSGG QQ + +GR ++ P ++++ E T+GL + I
Sbjct: 121 EAIYQMFPRLFERRRIWGNQLSGGEQQMLTIGRVLLSNPSILLIDEATEGLAPKMRDAIW 180
Query: 438 KTLLKLRDERKGILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEK 488
+TL + + I+++ +LD+++ L DR V+ +G+++ G + E ++
Sbjct: 181 ETLGIIARKGISIVIVDKNLDDLVDLVDRHVVLTKGQVVFEGTSAELLADQ 231
Score = 94.8 bits (232), Expect = 2e-18
Identities = 69/218 (31%), Positives = 114/218 (51%), Gaps = 4/218 (1%)
Query: 20 LRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIKVFGKEVSFNGPWDAIRE 79
LRGVN V GE LLG NG GK+TL+R L G +KP +G I + G++V+ R
Sbjct: 24 LRGVNFHVGRGETVSLLGRNGMGKTTLLRTLMGLLKPKRGAILLDGRDVTEARANIKARA 83
Query: 80 GIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKEKMREVGFEVPLNEIVED 139
G+ V + + P +V ENL A P +I ++ + + FE
Sbjct: 84 GMGFVPEGRGIFPNLSVEENLLFAARP-GPDGRIDWTQEAIYQMFPRL-FE-RRRIWGNQ 140
Query: 140 LPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTLRNLKERGITVIFITHKL 199
L G QQ + I + L+ N IL++DE T L P +++TL + +GI+++ + L
Sbjct: 141 LSGGEQQMLTIGRVLLSNPSILLIDEATEGLAPKMRDAIWETLGIIARKGISIVIVDKNL 200
Query: 200 KEVKEITDRVTVLRRGEVVGTVKTSE-VSERELARMMV 236
++ ++ DR VL +G+VV ++E ++++E+ R M+
Sbjct: 201 DDLVDLVDRHVVLTKGQVVFEGTSAELLADQEMVRTML 238
>gb|AAC80570.1| (AF105431) NodI [Bradyrhizobium sp. SNU001]
Length = 305
Score = 105 bits (259), Expect = 1e-21
Identities = 69/213 (32%), Positives = 113/213 (52%), Gaps = 6/213 (2%)
Query: 3 AVEMSGIVKVYPDGVVALRGVNLKVEEGEIHGLLGENGAGKSTLMRILYGEIKPTKGEIK 62
A+++ G+ K + D V+ + ++ V GE GLLG NGAGKST+ R+L G I P +G+I
Sbjct: 7 AIDLVGVRKSFGDKVI-VNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMIWPDRGKIT 65
Query: 63 VFGKEVSFNGPWDAIREGIAMVYQHFTLVPTFTVLENLYLAMLSINPGIKISDVEKLAKE 122
V + V R G+ +V Q L P FTV ENL + G+ +E +
Sbjct: 66 VLDEPVPSRA---RARRGVGVVPQFDNLEPEFTVRENLLVFGRYF--GMSARTIEAVVPS 120
Query: 123 KMREVGFEVPLNEIVEDLPVGIQQRVEIIKALMLNAKILILDEPTSVLTPIEVKELFKTL 182
+ E + V L G+++R+ + +AL+ + +L++DEPT+ L P +++ L
Sbjct: 121 LLEFARLESKADVRVSLLGGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERL 180
Query: 183 RNLKERGITVIFITHKLKEVKEITDRVTVLRRG 215
R L RG T++ TH ++E + + D + VL G
Sbjct: 181 RALLARGKTILLTTHFMEEAERLCDPLCVLESG 213
Score = 79.6 bits (193), Expect = 7e-14
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 15/221 (6%)
Query: 272 VKGVSFELREGEILGIAGVQGNGQRELAEALAGIRIPEKGKIELLGKDVTKLPAHERYKS 331
V +SF + GE G+ G G G+ +A L G+ P++GKI +L + V P+ R +
Sbjct: 23 VNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMIWPDRGKITVLDEPV---PSRARARR 79
Query: 332 GLAYVPDSRRVGLVLDMNVVENVVLTNLSRVLHKGRISWDKANEMTNEVVEKFEVLLSST 391
G+ VP L + V EN+++ GR A + V E +
Sbjct: 80 GVGVVPQFDN--LEPEFTVRENLLVF--------GRYFGMSARTIEAVVPSLLEFARLES 129
Query: 392 KAPIKH--LSGGNQQKVMVGREIIREPKVIVVSEPTQGLDIGATEFIRKTLLKLRDERKG 449
KA ++ L GG ++++ + R +I +P ++V+ EPT GLD A I + L L K
Sbjct: 130 KADVRVSLLGGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKT 189
Query: 450 ILLISTDLDEILQLSDRVAVIYEGKIMSIGKTEEFTLEKLG 490
ILL + ++E +L D + V+ G ++ G+ + E +G
Sbjct: 190 ILLTTHFMEEAERLCDPLCVLESGCKIAEGEPDALIDEHIG 230
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169177697
Number of Sequences: 2977
Number of extensions: 7036937
Number of successful extensions: 36384
Number of sequences better than 1.0e-10: 1799
Number of HSP's better than 0.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 1700
Number of HSP's that attempted gapping in prelim test: 28866
Number of HSP's gapped (non-prelim): 4335
length of query: 498
length of database: 189,106,746
effective HSP length: 61
effective length of query: 437
effective length of database: 152,599,039
effective search space: 66685780043
effective search space used: 66685780043
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)