BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0304 (rbsC-1) DE:ribose ABC transporter, permease protein
(rbsC-1)
(329 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75162 ribose abc transporter, permease protein (rbsc-1) PA... 646 0.0
pir||C71179 hypothetical protein PH1712 - Pyrococcus horikoshii ... 548 e-155
pir||D72493 hypothetical protein APE2587 - Aeropyrum pernix (str... 201 1e-50
emb|CAC14306.1| (AJ276209) putative permease 1 of an ABC transpo... 199 5e-50
pir||H72418 sugar ABC transporter, permease protein - Thermotoga... 190 2e-47
pir||E70184 ribose/galactose ABC transporter, permease protein (... 174 1e-42
pir||E70009 conserved hypothetical protein yufP - Bacillus subti... 166 3e-40
gb|AAG19336.1| (AE005028) ribose ABC transporter permease; RbsC2... 160 2e-38
gi|11498493 ribose ABC transporter, permease protein (rbsC-1) [A... 158 1e-37
pir||E71338 probable ribose/galactose ABC transporter, permease ... 148 8e-35
sp|P47366|Y120_MYCGE HYPOTHETICAL PROTEIN MG120 >gi|1361788|pir|... 116 3e-25
pir||B82944 ribose/galactose ABC transporter (N-term domain) UU0... 115 6e-25
pir||C83629 probable permease of ABC transporter PA0137 [importe... 112 7e-24
gb|AAC45345.1| (AF100324) putative polytopic protein [Mycoplasma... 110 3e-23
sp|P75515|Y120_MYCPN HYPOTHETICAL PROTEIN MG120 HOMOLOG (A65_ORF... 104 1e-21
pir||F72759 hypothetical protein APE0067 - Aeropyrum pernix (str... 92 9e-18
pir||F70184 ribose/galactose ABC transporter, permease protein (... 88 2e-16
pir||A72419 sugar ABC transporter, permease protein - Thermotoga... 87 4e-16
pir||D72759 hypothetical protein APE0065 - Aeropyrum pernix (str... 84 2e-15
pir||F70009 conserved hypothetical protein yufQ - Bacillus subti... 83 3e-15
pir||B71179 hypothetical protein PH1711 - Pyrococcus horikoshii ... 83 4e-15
pir||B75162 ribose abc transporter, permease protein (rbsc-2) PA... 82 1e-14
pir||F71338 probable ribose/galactose ABC transporter, permease ... 81 2e-14
gi|11498494 ribose ABC transporter, permease protein (rbsC-2) [A... 79 6e-14
pir||A75542 conserved hypothetical protein - Deinococcus radiodu... 73 6e-12
pir||D83629 probable permease of ABC transporter PA0138 [importe... 71 2e-11
gb|AAG19335.1| (AE005028) ribose ABC transporter permease; RbsC1... 71 2e-11
pir||G71341 conserved hypothetical integral membrane protein TP0... 71 2e-11
>pir||A75162 ribose abc transporter, permease protein (rbsc-1) PAB0304 -
Pyrococcus abyssi (strain Orsay)
>gi|5457886|emb|CAB49376.1| (AJ248284) ribose ABC
transporter, permease protein (rbsC-1) [Pyrococcus
abyssi]
Length = 329
Score = 646 bits (1648), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MLNRETIFEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYLLNKSTPLILT 60
MLNRETIFEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYLLNKSTPLILT
Sbjct: 1 MLNRETIFEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYLLNKSTPLILT 60
Query: 61 GLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLFVGFLR 120
GLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLFVGFLR
Sbjct: 61 GLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLFVGFLR 120
Query: 121 VYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIPGGVIFGIAVAF 180
VYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIPGGVIFGIAVAF
Sbjct: 121 VYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIPGGVIFGIAVAF 180
Query: 181 SILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGI 240
SILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGI
Sbjct: 181 SILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGI 240
Query: 241 TYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELA 300
TYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELA
Sbjct: 241 TYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELA 300
Query: 301 DTLIGVIVLALAIPYAYRMLLKRLKEGRE 329
DTLIGVIVLALAIPYAYRMLLKRLKEGRE
Sbjct: 301 DTLIGVIVLALAIPYAYRMLLKRLKEGRE 329
>pir||C71179 hypothetical protein PH1712 - Pyrococcus horikoshii
>gi|3258143|dbj|BAA30826.1| (AP000007) 337aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 337
Score = 548 bits (1398), Expect = e-155
Identities = 272/327 (83%), Positives = 303/327 (92%), Gaps = 4/327 (1%)
Query: 7 IFEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYLLNKSTPLILTGLAFSI 66
+ EV +S+ +AF VGA+ALLILGYHP VY +LFKYGYSN+NYLLNKSTPLI+TGLAFSI
Sbjct: 11 VTEVLLSVFMAFTVGAVALLILGYHPGEVYYILFKYGYSNLNYLLNKSTPLIMTGLAFSI 70
Query: 67 PAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLFVGFLRVYRGIN 126
PAIAGVFNIGGESQLY+GAFLGLLTAYYTGN++LA+IVG +SGGLLGLFVG LRVYRGIN
Sbjct: 71 PAIAGVFNIGGESQLYIGAFLGLLTAYYTGNSILALIVGALSGGLLGLFVGALRVYRGIN 130
Query: 127 EVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIP--GGV--IFGIAVAFSI 182
EVITAIMVNWIFYYLIAYLIA++FYNPEVSHES+PVPP+ARI GGV IF +AV F+I
Sbjct: 131 EVITAIMVNWIFYYLIAYLIAAKFYNPEVSHESIPVPPEARIGSIGGVSLIFLLAVLFAI 190
Query: 183 LYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGITY 242
YYY+LYFTD+G+KLRVSGLSP SA+YAGF+PSKAI+ SM LGG AAGLGGVLL+LGITY
Sbjct: 191 FYYYLLYFTDVGYKLRVSGLSPASAKYAGFDPSKAIVISMFLGGVAAGLGGVLLILGITY 250
Query: 243 SIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELADT 302
SIDDTLTAIYGLGFTGIGIGLLGRN+PIGIIFSSIFLSGLLIGGQWVELKT APPELADT
Sbjct: 251 SIDDTLTAIYGLGFTGIGIGLLGRNNPIGIIFSSIFLSGLLIGGQWVELKTRAPPELADT 310
Query: 303 LIGVIVLALAIPYAYRMLLKRLKEGRE 329
LIGVIVLALAIPYAY+ML+K+ EGR+
Sbjct: 311 LIGVIVLALAIPYAYKMLIKKFTEGRK 337
>pir||D72493 hypothetical protein APE2587 - Aeropyrum pernix (strain K1)
>gi|5106293|dbj|BAA81604.1| (AP000064) 376aa long
hypothetical protein [Aeropyrum pernix]
Length = 376
Score = 201 bits (505), Expect = 1e-50
Identities = 114/320 (35%), Positives = 181/320 (55%), Gaps = 21/320 (6%)
Query: 13 SIVVAFLVGAIALLILGYHPV-AVYKVLFKYGYSNVNYLLNKSTPLILTGLAFSIPAIAG 71
++ + + GAI L + G P+ V +L + Y +L+ +S+ L++T LAF+IP G
Sbjct: 36 AVGLGLVAGAIVLALGGADPLRGVADILLSFIYYPEIFLV-RSSILVMTALAFAIPLRMG 94
Query: 72 VFNIGGESQLYVGAFLGLLTAYYTGNAVL-AIIVGIISGGLLGLFVGFLRVYRGINEVIT 130
FNIG E QLY GA L+ A L A++ ++GGL+GLF G LRV INEV++
Sbjct: 95 FFNIGAEGQLYAGAAAALVAALTLPYTPLPALVAAAVAGGLMGLFAGLLRVKLNINEVLS 154
Query: 131 AIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIPG------------------GV 172
IM+NWI ++ + Y++ +P SH ++ VP +ARIP +
Sbjct: 155 TIMLNWIAFWSLRYIVVEYLADPVYSHLTLEVPLEARIPWIPSELLPPPLQEHLRSGFPM 214
Query: 173 IFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLG 232
I +++A ++ + ++Y T G + R +G + +A G + L SM G AGLG
Sbjct: 215 IVFVSLATALAAWTVIYKTVPGLRYRFAGANEYAAASRGVAVGRVKLASMAAAGVLAGLG 274
Query: 233 GVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELK 292
G LL+LG +Y ID TL+ ++G GF GIG+ L+GRN+P+GI+ +S+F+ L G + +++
Sbjct: 275 GALLILGHSYRIDSTLSGLFGYGFEGIGVALIGRNNPLGIVAASLFVGDLASGSERIQVT 334
Query: 293 TGAPPELADTLIGVIVLALA 312
P ELAD + G I+ +A
Sbjct: 335 ARIPAELADVVNGAIIFTVA 354
>emb|CAC14306.1| (AJ276209) putative permease 1 of an ABC transporter [Clostridium
sticklandii]
Length = 354
Score = 199 bits (500), Expect = 5e-50
Identities = 119/343 (34%), Positives = 187/343 (53%), Gaps = 26/343 (7%)
Query: 5 ETIFEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYL---LNKSTPLILTG 61
E + +SI++ FLVGA+ L I G++P+ Y V+ + ++ + +TPLILTG
Sbjct: 8 EQLLYTLLSIILGFLVGAVILSIAGFNPIEAYSVMIQGVIGKPRFIAWTIVYATPLILTG 67
Query: 62 LAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYY-TGNAV----LAIIVGIISGGLLGLFV 116
L+ + G+FNIG E Q +G+ +L Y+ G A+ LAII G ++G L
Sbjct: 68 LSVAFAFRTGLFNIGAEGQYIIGSMAAVLVGYFFDGPAIIHIPLAIIAGCLAGALWAAIA 127
Query: 117 GFLRVYRGINEVITAIMVNWIFYYL---IAYLIASRFYNPEVSHESV-----------PV 162
G L+ GINEVI+ IM+NWI YL + + R N E S+ P+
Sbjct: 128 GLLKAKFGINEVISTIMLNWIALYLSNFVTTIDGFRLPNSEASYSIKETASIGISFLKPL 187
Query: 163 PPQARIPGGVIFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSM 222
A++ G++ IA+ +IL YYI++ T +G++LR G + +A Y G N +K+I+ SM
Sbjct: 188 VGTAKVNWGIV--IAIIAAILVYYIIFKTTLGYELRAVGYNKHAAEYGGINVNKSIVISM 245
Query: 223 LLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGL 282
+ G AGL GV VLG+++ I L A G GF G+ + L+G N P G++ + + GL
Sbjct: 246 AIAGGLAGLAGVTQVLGVSHKI-TILAAAEGYGFDGMAVSLIGANSPFGVLLAGLLFGGL 304
Query: 283 LIGGQWVELKTGAPPELADTLIGVIVLALAIPYAYRMLLKRLK 325
GG ++ GAPPE+ +IG I+ +A ++L+ + K
Sbjct: 305 KYGGSKLQ-TIGAPPEVVSIVIGSIIYFIAASSIVKILINKFK 346
>pir||H72418 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980594|gb|AAD35198.1|AE001696_12
(AE001696) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 344
Score = 190 bits (478), Expect = 2e-47
Identities = 113/347 (32%), Positives = 183/347 (52%), Gaps = 22/347 (6%)
Query: 1 MLNRETIFEVAI-SIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYLLN---KSTP 56
M NR F V S+++A L+ A+ ++++G +PV YK + + + N+ L + K+TP
Sbjct: 1 MNNRVWSFLVPFFSVIIALLIAAVVIILIGQNPVIAYKAMIEGAFGNIQALADTVIKTTP 60
Query: 57 LILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAV------LAIIVGIISGG 110
LILTGLA AG+FNIG E Q+ +G L + + L +I G++ G
Sbjct: 61 LILTGLAVGFGFRAGLFNIGAEGQMIMGGILATVVGMHMRGIPPALAIPLTMIAGMLGGA 120
Query: 111 LLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIPG 170
G+L+ G +EV++ IM+NWI Y+ +YLI + +S + P A++P
Sbjct: 121 AWASIAGYLKAKTGAHEVVSTIMLNWIATYISSYLITGPLAVGSGTPKSPEIAPSAKLPP 180
Query: 171 GVIFG---------IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTS 221
V G I++ +++ Y +L T G++++ G +P +A Y G N SK I+
Sbjct: 181 IVTVGALEMTSGILISILSAVVIYIVLEKTKTGYEVKAVGFNPYAAEYGGINISKNIVMC 240
Query: 222 MLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSG 281
M + GA AGL G L V+G+ + TL+ G GF GI I L+G+NHPIGIIF+S ++
Sbjct: 241 MAISGALAGLAGALEVMGLHHRFLGTLSG--GKGFDGISIALIGQNHPIGIIFASFLIAA 298
Query: 282 LLIGGQWVELKTGAPPELADTLIGVIVLALAIPYAYRMLLKRLKEGR 328
L G ++ G P + + G+++ +A + LL+ K R
Sbjct: 299 LRTGSSNMQF-VGVPKHIVTIIQGIVIFLVAADRIVKTLLRFRKVKR 344
>pir||E70184 ribose/galactose ABC transporter, permease protein (rbsC-1) homolog
- Lyme disease spirochete >gi|2688600|gb|AAC67017.1|
(AE001168) ribose/galactose ABC transporter, permease
protein (rbsC-1) [Borrelia burgdorferi]
Length = 383
Score = 174 bits (437), Expect = 1e-42
Identities = 112/355 (31%), Positives = 185/355 (51%), Gaps = 38/355 (10%)
Query: 8 FEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSN---VNYLLNKSTPLILTGLAF 64
F ++ V FL+ + ++ LG+ P +Y ++ + +S+ + Y+L+ S PLI TGL+
Sbjct: 21 FVSVFALFVGFLIVGLVVMGLGHSPFRMYFIILEIIFSSPKHLGYVLSYSAPLIFTGLSI 80
Query: 65 SIPAIAGVFNIGGESQLYVGAFLGLLTAYYTG-----NAVLAIIVGIISGGLLGLFVGFL 119
I AG+FNIG E Q +G+ + L+ + + + I+ ++ G LG+ +G+L
Sbjct: 81 GISLKAGLFNIGVEGQFILGSIVALIASVLLDLPPILHVITIFIITFLASGSLGILIGYL 140
Query: 120 RVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARI---------PG 170
+ I+EVI+ IM NWI ++L ++ F + S S P+ A I P
Sbjct: 141 KAKFNISEVISGIMFNWILFHLNNIILDFSFIKRDNSDFSKPIKESAYIDFLASWKLSPE 200
Query: 171 GVI-----------------FGI--AVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAG 211
G+ FGI + F+IL +++L T IGFK+ +G + ++R G
Sbjct: 201 GLAYRSSHPFVNELLKAPLHFGIILGIIFAILIWFLLNKTIIGFKINATGSNIEASRCMG 260
Query: 212 FNPSKAILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIG 271
N ++ SM L A AGL G + ++G+ +I L+ + G+GF GI L+G N PIG
Sbjct: 261 INVKAVLIFSMFLSAAVAGLAGAIQLMGVNKAIFK-LSYMQGIGFNGIAASLMGNNSPIG 319
Query: 272 IIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVIVLALAIPY-AYRMLLKRLK 325
IIFSSI S LL G V+ G P + ++G+IVL ++ Y +++LK +K
Sbjct: 320 IIFSSILFSILLYGSSRVQSLMGLPSSIVSLMMGIIVLVISASYFLNKIVLKGVK 374
>pir||E70009 conserved hypothetical protein yufP - Bacillus subtilis
>gi|1934813|emb|CAB07938.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635652|emb|CAB15145.1| (Z99120) similar
to hypothetical proteins [Bacillus subtilis]
Length = 348
Score = 166 bits (417), Expect = 3e-40
Identities = 108/339 (31%), Positives = 182/339 (52%), Gaps = 31/339 (9%)
Query: 12 ISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYL---LNKSTPLILTGLAFSIPA 68
I+I++ GA+ +L+ GY + Y L+ + + Y+ + + TP IL+GLA +
Sbjct: 13 IAIILGLAAGALIMLVSGYSVASGYSALWNGIFGEIYYVGETIRQITPYILSGLAVAFAF 72
Query: 69 IAGVFNIGGESQLYVGAFLGLLTAYYTGNAV---------LAIIVGIISGGLLGLFVGFL 119
G+FNIG E QL VG A + G A LA+I +GGL G G L
Sbjct: 73 RTGLFNIGVEGQLLVG----WTAAVWVGTAFDGPAYIHLPLALITAAAAGGLWGFIPGIL 128
Query: 120 RVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVS----HESVP--------VPPQAR 167
+ ++EVI IM+N+I ++ Y+I++ + + HES + +R
Sbjct: 129 KARFYVHEVIVTIMMNYIALHMTNYIISNVLTDHQDKTGKIHESASLRSPFLEQITDYSR 188
Query: 168 IPGGVIFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGA 227
+ G+I +A+ +++ ++I+ + GF+LR G + +++YAG + K I+TSML+ GA
Sbjct: 189 LHLGII--VALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSVRKNIMTSMLISGA 246
Query: 228 AAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQ 287
AGL G + LG T+ A G+GF GI + LLG N +G++ ++ L GL IG
Sbjct: 247 FAGLAGAMEGLG-TFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLAACLLGGLKIGAL 305
Query: 288 WVELKTGAPPELADTLIGVIVLALAIPYAYRMLLKRLKE 326
+ +++G P E+ D +I +I+L +A YA R ++ +LK+
Sbjct: 306 NMPIESGVPSEVVDIVIAIIILFVASSYAIRFVMGKLKK 344
>gb|AAG19336.1| (AE005028) ribose ABC transporter permease; RbsC2 [Halobacterium
sp. NRC-1]
Length = 407
Score = 160 bits (401), Expect = 2e-38
Identities = 118/377 (31%), Positives = 176/377 (46%), Gaps = 62/377 (16%)
Query: 7 IFEVAISIVVAFLVGAIALL-----ILG------YHPVAVYKVLFKYGYSN--------- 46
+ VA+ V+ L G A I G Y P AVY LF +
Sbjct: 32 VLAVAVGFVIVTLAGLAASCTTHPTIFGVRTPSCYDPFAVYSELFLGAIGHPEQVLFGTG 91
Query: 47 --------VNYLLNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNA 98
V LL +T L+ TGLA ++ AG+FNIG + QL +GA L Y
Sbjct: 92 TWTPLDFRVASLLRSTTLLVFTGLAVAVSFRAGMFNIGVQGQLLLGALAAALATVYAAPL 151
Query: 99 V------------LAIIVGIISGGLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLI 146
V + I+ G ++GG+ G G L+ Y NEVIT IM+N++ L AY+
Sbjct: 152 VPGGVVGTLVLVPVGIVAGALAGGVWGAIPGALKAYADANEVITTIMLNFVAANL-AYVA 210
Query: 147 ASRFYNPEVSH--ESVPVPPQARIPG--------------GVIFGIAVAFSILYYYILYF 190
S ++ P S ++ +P ARIP G++F +A+ + Y +L
Sbjct: 211 VSTWFTPADSSLVQTATIPAAARIPNVPFGFQPRDNFSLLGLLFAVALVVGVAY--LLAR 268
Query: 191 TDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTA 250
T G+ LR SG P +A Y G + ++TSM + GA G+ G +LVL + L+
Sbjct: 269 TSFGYDLRTSGSQPEAAAYGGVKEKRTMVTSMGISGALGGISGAMLVLMVQ---GRWLSN 325
Query: 251 IYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVIVLA 310
+ LGF GI + +L N+P+G+ F+++ L G + T PP L D L G+I+L
Sbjct: 326 LPQLGFDGITVSILAGNNPLGVGFAALLFGVLKSGSAAIGFGTNVPPALVDVLRGLIILF 385
Query: 311 LAIPYAYRMLLKRLKEG 327
+A+P +R+L RL G
Sbjct: 386 VAMPEFFRLLGGRLGVG 402
>gi|11498493 ribose ABC transporter, permease protein (rbsC-1) [Archaeoglobus
fulgidus] >gi|7451345|pir||H69360 ribose ABC
transporter, permease protein (rbsC-1) homolog -
Archaeoglobus fulgidus >gi|2649711|gb|AAB90350.1|
(AE001042) ribose ABC transporter, permease protein
(rbsC-1) [Archaeoglobus fulgidus]
Length = 332
Score = 158 bits (395), Expect = 1e-37
Identities = 99/314 (31%), Positives = 167/314 (52%), Gaps = 18/314 (5%)
Query: 12 ISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSN---VNYLLNKSTPLILTGLAFSIPA 68
IS+ + ++ I L +G +P+ Y V+F +++ + L K+TPLILTGLA +IP
Sbjct: 9 ISVAASLVLVGILLAAIGINPLEAYAVMFTRSFTSKFGLAELCVKTTPLILTGLAVAIPL 68
Query: 69 IAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIIS-GGLLGL----FVGFLRVYR 123
AG++NIG E QLY+GAF + A Y+ A++ + + G L G+ L+
Sbjct: 69 RAGLWNIGAEGQLYMGAFAASVVALYSNLPGYAMLPAMFAVGALFGMGWAAIPAVLKAKF 128
Query: 124 GINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVP--VPPQARIPG------GVIFG 175
+NE+I+ +++N++ Y + Y++ EV + P A +P + F
Sbjct: 129 DLNEIISTLLLNYVAIYWVEYMVYGPMRGKEVYNFPYTDLFPDAATLPRFFGTRFHLGFF 188
Query: 176 IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVL 235
IAV +++ YYI+ TD GF L+V G +P +A YAG + K ++ SMLLGG AG+ G++
Sbjct: 189 IAVVIALVIYYIIRKTDFGFSLKVVGANPRAAEYAGISRQKMVIYSMLLGGMLAGIAGMI 248
Query: 236 LVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGA 295
V GI + +++ G G+ GI + LL +P+ ++ S+ L +GG ++
Sbjct: 249 EVSGIQLRLRPSIST--GYGYAGIPVALLASGNPLLVMLSAALFGFLYVGGSALQTTYSV 306
Query: 296 PPELADTLIGVIVL 309
P + +IVL
Sbjct: 307 PVAIVYVFQSLIVL 320
>pir||E71338 probable ribose/galactose ABC transporter, permease protein
(rbsC-1) - syphilis spirochete
>gi|3322599|gb|AAC65310.1| (AE001212) ribose/galactose
ABC transporter, permease protein (rbsC-1) [Treponema
pallidum]
Length = 400
Score = 148 bits (370), Expect = 8e-35
Identities = 104/348 (29%), Positives = 178/348 (50%), Gaps = 42/348 (12%)
Query: 12 ISIVVAFLVGAIALLILGYHP----VAVYKVLFKYGYS---------NVNYL---LNKST 55
+++++ F VGA+ + + G HP +A+ + +F N Y+ +
Sbjct: 51 LAVILGFAVGAVVMAVSGLHPKYILIALVRSMFGVNVQAFGTGRSVWNFRYMGEGVVTCL 110
Query: 56 PLILTGLAFSIPAIAGVFNIGGESQLYVGAF----LGLL----TAYYTGNAVLAIIVGII 107
PLILTGLA + + G+FNIG E QL VG+ +G+L +++T A A++ G++
Sbjct: 111 PLILTGLAVAFTSHMGLFNIGAEGQLVVGSVCAVCVGVLWHEHLSFFTIPA--AVLAGMV 168
Query: 108 SGGLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQAR 167
GGL GL G LR GI+EV+ IM+N++ Y +++ + + + +V +PP A
Sbjct: 169 GGGLWGLIPGVLRAVCGISEVVVTIMLNYVGLYGANFVVTALPGSDLM--RTVSLPPAAT 226
Query: 168 IPGGVI------------FGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPS 215
+ + F + +A + + +++ T G++LRV G S +ARYAG +
Sbjct: 227 LHSDFLSRVSNGSRLHWGFLLVIAALVSFKFLIEKTTFGYELRVVGASAEAARYAGIHIR 286
Query: 216 KAILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFS 275
+ ++ + + G AGL GVLL +G T+S L G GF GI + L+GRN G +F
Sbjct: 287 RRVMLATSISGMYAGLAGVLLAIG-TFSYGRVLPGFEGYGFEGIVVSLVGRNTAWGCVFG 345
Query: 276 SIFLSGLLIGGQWVELKTGAPPELADTLIGVIVLALAIPYAYRMLLKR 323
L L G ++L G P E++ ++ I++ L++ R +L R
Sbjct: 346 GSLLGSLRAAGPLMQL-NGVPKEVSVIIVSAIIVFLSMHNGIRAMLVR 392
>sp|P47366|Y120_MYCGE HYPOTHETICAL PROTEIN MG120 >gi|1361788|pir||C64213 ribose transport
system permease homolog - Mycoplasma genitalium
>gi|3844710|gb|AAC71338.1| (U39692) conserved
hypothetical protein [Mycoplasma genitalium]
Length = 520
Score = 116 bits (288), Expect = 3e-25
Identities = 87/344 (25%), Positives = 158/344 (45%), Gaps = 36/344 (10%)
Query: 2 LNRETIFEVAISIVVAFLVGAIALL-ILGYHPVAVYKVLFKYGYSNVNY--LLNKSTPLI 58
+ R +I + I+++FL+ + ++ I G + + + K N N L + I
Sbjct: 29 MQRRSILSSVVLIILSFLISFLLIISIPGGRGASFFALFTKLFLDNTNTENFLRQIAIYI 88
Query: 59 LTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYT---------GNAVLAIIVGIISG 109
L GLAFS G+FNIG Q+ GA G L G ++ +++ +I
Sbjct: 89 LAGLAFSFCMSVGIFNIGISGQMMAGAIFGFLMILKVFPSSFRPGFGGQIITVLLMVIGS 148
Query: 110 GLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPE---VSHESVPVPPQA 166
+ + V L+++ +NEV++AIM+NWI + AYL+ + + S+P+P +
Sbjct: 149 VSVAVVVATLKIFFKVNEVVSAIMLNWIVVLISAYLVETYIKDNSGGTAQFFSLPLPDEF 208
Query: 167 RIPG--------GVIFGIAVAF--SILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSK 216
+ G + + +AF I+ +L +T G KL+ G S ++ GFN K
Sbjct: 209 ALYNFSPLTKKFGWLASLIIAFISVIIVAVVLKYTVFGHKLKSIGSSVFGSQAMGFNVRK 268
Query: 217 AILTSMLLGGAAAGLGGVLLVLGITYSI-------DDTLTAIYGLGFTGIGIGLLGRNHP 269
S ++ G +GL ++ T + D ++A+ GF GI IGL+ N+P
Sbjct: 269 YQFLSFIISGILSGLLATVVYTASTEKVLTFNNVGDSAISAVPATGFDGIAIGLIALNNP 328
Query: 270 IGIIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVIVLALAI 313
I+ S+ ++ + IG + L P A ++G+++ A+
Sbjct: 329 FRIVIVSVLIAFVNIGARPANLN----PNTASLVLGIMMYFAAL 368
>pir||B82944 ribose/galactose ABC transporter (N-term domain) UU014 [imported] -
Ureaplasma urealyticum
>gi|6898959|gb|AAF30419.1|AE002101_2 (AE002101)
ribose/galactose ABC transporter (N-term domain)
[Ureaplasma urealyticum]
Length = 736
Score = 115 bits (286), Expect = 6e-25
Identities = 95/333 (28%), Positives = 159/333 (47%), Gaps = 40/333 (12%)
Query: 13 SIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNYLLNKSTPLILTGLAFSIPAIAGV 72
+I VA +V AI + ILGY+ + LF + + L K L + L+F AG+
Sbjct: 32 AIFVAIVVSAILVGILGYNIRDFFIRLFTKWIGSPDIYLTKVAILGIAALSFIFAFKAGL 91
Query: 73 FNIGGESQLYVGAFLGLLTAYYTGNAVL----------AIIVGIISGGLLGLFVGFLRVY 122
FNIG Q+ + LL A + +I+ +++G + +F+G L+V+
Sbjct: 92 FNIGISGQMLGSGLIMLLVVKNMQIANINMPNVLGQFFLLIIAMLAGAMFAVFIGILKVF 151
Query: 123 RGINEVITAIMVNWIFYYLIAYLI---ASRFYNP---EVSHESVPVPPQARI-----PGG 171
INEV+++I++NWI +Y+ Y++ S+ YNP +V S+P + G
Sbjct: 152 LKINEVVSSILLNWIMFYITRYVVFTAQSKMYNPTPDQVGSRSIPFADNYSLFHLASGYG 211
Query: 172 VIFG--IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAA 229
+F I ++ SI+ + IL +T G K+ G S +A+YAG+ L + + GA A
Sbjct: 212 YLFALLIFISLSIIIWVILKYTVFGHKVLSVGKSFDAAKYAGYRTKIISLATFAISGALA 271
Query: 230 GLGGVLLVLGITYS---IDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLL--- 283
G ++ T + I A+ G+ GI +GL+ HP+ I S FL GLL
Sbjct: 272 GALAMVNYTSTTTNAIVISQAADALPTQGYDGIAMGLISLAHPLATIPVS-FLMGLLQQS 330
Query: 284 ---IGGQWVELKTGAPPELADTLIGVIVLALAI 313
+GG + P +L+ +I ++L A+
Sbjct: 331 ADNLGGSF-------PQDLSGIIISFVMLGAAM 356
>pir||C83629 probable permease of ABC transporter PA0137 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9945966|gb|AAG03527.1|AE004451_8 (AE004451) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 365
Score = 112 bits (277), Expect = 7e-24
Identities = 88/320 (27%), Positives = 151/320 (46%), Gaps = 30/320 (9%)
Query: 15 VVAFLVGAIALLILGY------HPVAVYKVLFKYGYSNVNYLLNKSTPLILTGLAFSIPA 68
++ + GA+ LG+ H V V + YG LL K+ P++L L ++
Sbjct: 25 LLTLVCGALLFACLGHDPWQTLHTVLVQPLSDLYGLGE---LLVKAMPILLCALGLALAY 81
Query: 69 IAGVFNIGGESQLYVGAFLGLLTAY----YTGNAVLA--IIVGIISGGLLGLFVGFLRVY 122
A V+NIG E QL VGA G A + LA ++ G +G L F +LR
Sbjct: 82 QARVWNIGAEGQLLVGALAGSAVAIQLLDWQSRWALAWVLLAGTAAGALWAGFAAWLRTR 141
Query: 123 RGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSH--ESVPVPPQARIPG---------G 171
NE++T IM+N+I L+ Y + +P+ + +S +R+P G
Sbjct: 142 FNANEILTTIMLNYIALNLLLYGVHGPLKDPDGFNFPQSALFGEASRLPALFEDSRVHLG 201
Query: 172 VIFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGL 231
+FG+ ++ + + + +GF++RV GL +A + GF + + +L GA AGL
Sbjct: 202 ALFGLLALAAV--WVLAQRSFLGFQVRVLGLDRRAAGFVGFREKRLVWFVLLFSGALAGL 259
Query: 232 GGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVEL 291
GV V G + ++ G G+ I + LGR +P GI+ +S+ ++ L +GG+ ++
Sbjct: 260 AGVCEVAGPIGQLVPQVSP--GYGYAAITVAFLGRLNPFGILCASLLMALLYLGGEAAQM 317
Query: 292 KTGAPPELADTLIGVIVLAL 311
P L+ G+++ L
Sbjct: 318 SLNLPLALSGLFQGMMLFFL 337
>gb|AAC45345.1| (AF100324) putative polytopic protein [Mycoplasma fermentans]
Length = 536
Score = 110 bits (272), Expect = 3e-23
Identities = 83/295 (28%), Positives = 133/295 (44%), Gaps = 20/295 (6%)
Query: 39 LFKYGYSNVNYLLNKSTPLIL---TGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYT 95
L+ Y + + N + T ++ TGLA SI G+FNIG Q+ + A L
Sbjct: 75 LWNYSFIDKNIKFDFPTFFVIFGFTGLAVSIGFKVGLFNIGISGQMLLPAILVFSFIAKA 134
Query: 96 GN-------AVLAIIVGIISGGLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIA- 147
N LAII+ II G G G L+ Y I+EVI+ I +NWI ++ +L +
Sbjct: 135 RNFNVDAGFLWLAIILFIIVGFATGAIAGLLKAYCKIHEVISTIFINWIVAFISGWLFSL 194
Query: 148 -SRFYNPEVSHESVPVPPQARIPGGVIF-------GIAVAFSILYYYILYFTDIGFKLRV 199
+ +NPE + + I V + G+ V +I+ + I FT +G+K+ +
Sbjct: 195 NGKMFNPESYSPTTIGSARIAIENAVKYQFVYFGIGMFVLTAIVLFVIYNFTTLGYKINM 254
Query: 200 SGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGG-VLLVLGITYSIDDTLTAIYGLGFTG 258
G +P +A+Y G N + M GA AG G +++ + +D + +GF
Sbjct: 255 VGKNPSNAKYIGLNEKMLTIIVMGFSGALAGFAGFYYIIIKEGWIVDSFGSNPIAIGFES 314
Query: 259 IGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVIVLALAI 313
I + L+ NHPIGI S F S + +K + + G+IV A+
Sbjct: 315 IAVSLIALNHPIGITLSGFFYSMIYTTRDLFAIKDKLTKDFFPIITGIIVFMAAL 369
>sp|P75515|Y120_MYCPN HYPOTHETICAL PROTEIN MG120 HOMOLOG (A65_ORF517)
>gi|2146367|pir||S73900 MG120 homolog A65_orf517 -
Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674274|gb|AAB96222.1| (AE000056) sugar
(ribose/galactose) ABC transporter permease subunit, but
probably C-terminal [Mycoplasma pneumoniae]
Length = 517
Score = 104 bits (258), Expect = 1e-21
Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 40/344 (11%)
Query: 4 RETIFEVAISIVVAFLVGAIALL----ILGYHPVAVYKVLFKYGYSNVNYLLNKSTPLIL 59
R +I+ IV++F+V ++ I G + ++ LFK N+ + L
Sbjct: 28 RRSIYSTFSLIVLSFIVSFFLIVAIPGIKGGTFLEIFTRLFK-DRINIENFARQIAIYTL 86
Query: 60 TGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYT---------GNAVLAIIVGIISGG 110
LAFS GVFNIG Q+ GA G + G ++ I++ I+
Sbjct: 87 AALAFSFCMSVGVFNIGISGQMMAGANFGFMMILKVFPESFRPAFGGQIITILLMILGSV 146
Query: 111 LLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHE----SVPVPP-- 164
+ + V L+V+ +NEV++AIM+NW+ + AYL+ + + PE + S+ +P
Sbjct: 147 TVAMVVAALKVFFKVNEVVSAIMLNWVIVLVSAYLVGT-YIKPEKTDTSQFYSIELPDAF 205
Query: 165 --------QARIPGGVIFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSK 216
Q + IA+A +I ++ FT G KL+ +GLS ++ AG++ K
Sbjct: 206 ALYNFSDVQQKYGWLTSLVIAIAAAIFIAVLMKFTVFGHKLKSTGLSVTGSQAAGYSVKK 265
Query: 217 AILTSMLLGGAAAGLGGVLLVLG-----ITYSI--DDTLTAIYGLGFTGIGIGLLGRNHP 269
S ++ G +GL ++ +T+S D +T++ GF GI IGL+ N P
Sbjct: 266 YQFLSFVISGILSGLLAAVVYTASFEKQLTFSDVGDFGITSVPITGFDGIAIGLIALNSP 325
Query: 270 IGIIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVIVLALAI 313
I+ S +S + IG + G A ++G+++ AI
Sbjct: 326 ARIVIVSTIISFVTIGAK----PAGLNAATASLVLGIMMYFAAI 365
>pir||F72759 hypothetical protein APE0067 - Aeropyrum pernix (strain K1)
>gi|5103455|dbj|BAA78976.1| (AP000058) 281aa long
hypothetical protein [Aeropyrum pernix]
Length = 281
Score = 92.1 bits (225), Expect = 9e-18
Identities = 76/266 (28%), Positives = 128/266 (47%), Gaps = 14/266 (5%)
Query: 47 VNYLLNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGI 106
++ +L PL L L ++ G N+G + + VGA +G L TG+ + + G
Sbjct: 6 ISAVLTTLIPLSLAALGEAVLERTGRVNLGVDGLMAVGAAVGALAGVETGSLLAGLAAGA 65
Query: 107 ISGGLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQA 166
++GG+ L L G+N ++ ++V A + +++ PV
Sbjct: 66 LAGGVGSLSYIILTDRLGVNMIVAGLLV------FFAGIGLGDLVGSKIAGRPGPVLTSL 119
Query: 167 RIPGGVIFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGG 226
I GIA ++ + ILY T G LRV G +P +A+ G + L++ L+ G
Sbjct: 120 YTTAATI-GIA---AVALHLILYNTVTGTALRVVGENPAAAKERGVPVWRLRLSAALVQG 175
Query: 227 AAAGLGGVLLVLGITY-SIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIG 285
+AGL G ++V G++Y +TA GLG+ +GI +LG PIG++ +S +S +
Sbjct: 176 LSAGLAGYIMVAGLSYGKWYSGVTA--GLGWVALGIVILGYWTPIGVLIASTAVSTVFSM 233
Query: 286 GQWVELKTGAPPELADTLIGVIVLAL 311
+ TG PP LAD + ++VL L
Sbjct: 234 RTQIAAATGIPP-LADAIPYILVLIL 258
>pir||F70184 ribose/galactose ABC transporter, permease protein (rbsC-2) homolog
- Lyme disease spirochete >gi|2688599|gb|AAC67016.1|
(AE001168) ribose/galactose ABC transporter, permease
protein (rbsC-2) [Borrelia burgdorferi]
Length = 311
Score = 87.8 bits (214), Expect = 2e-16
Identities = 66/250 (26%), Positives = 118/250 (46%), Gaps = 29/250 (11%)
Query: 50 LLNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISG 109
L+N T LIL GL I +G+ NIG E + +GAF G AY+T + + +I G ++G
Sbjct: 16 LINSQT-LILAGLGGLISEKSGIINIGLEGIMTIGAFSGATVAYFTNDPLFSIFAGGLAG 74
Query: 110 GLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPP-QARI 168
+L + ++ +++IT + +N++ + ++ F S+ PP + ++
Sbjct: 75 LVLAILHAVFTIFLKSDQIITGMALNFLGPAIAVFISTLIF-------SSISTPPIEIKL 127
Query: 169 P---GGV---------IFG------IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYA 210
P G+ IFG IA+ +L++ + +T IG ++ SG +P
Sbjct: 128 PILFDGILNKTSFIFQIFGKRYSVYIAILSVVLFHIVFKYTKIGLRINASGENPEVLESV 187
Query: 211 GFNPSKAILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPI 270
G + +K +LL G AG+ G +L + S +T G GF I + + G+ P+
Sbjct: 188 GVSVNKIRFFCVLLSGFLAGVSGAVLTTVVASSYVQGVTG--GQGFIAIVMLIFGKWTPL 245
Query: 271 GIIFSSIFLS 280
G++ S S
Sbjct: 246 GVLIGSFLFS 255
>pir||A72419 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980595|gb|AAD35199.1|AE001696_13
(AE001696) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 319
Score = 86.6 bits (211), Expect = 4e-16
Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 15/240 (6%)
Query: 51 LNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGG 110
L STPL+ L + GV NI E + +GAF ++ YYTGN L ++ I G
Sbjct: 21 LTASTPLLFASLGGVFSEVTGVVNIALEGIMLLGAFSSVVITYYTGNVWLGFLLSIPIGI 80
Query: 111 LLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSH-----ESVPVPPQ 165
F + + N++++A + + L +L+ F P + E + +P
Sbjct: 81 GFSWFHAWASIKWRGNQIVSATALILVAQGLTGFLMEPIFGQPGQTPYVGRIEEITLPGI 140
Query: 166 ARIP------GGVIFGIAVAFSILYY--YILYFTDIGFKLRVSGLSPVSARYAGFNPSKA 217
+ IP G + + +AF+++++ +++Y T +G ++R G +P +A G + K
Sbjct: 141 SSIPFIGEAIGTISPIVLIAFAMVFFAWFLIYKTPLGLRMRSVGENPEAADTLGVDVFKI 200
Query: 218 ILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSI 277
+L+ GA A +GG L +G + + +T G GF + +LG +PIG +++ +
Sbjct: 201 RYFGVLMSGALASMGGAFLSIGEVGNFRELMTG--GRGFIALAAMILGNWNPIGAMWACL 258
>pir||D72759 hypothetical protein APE0065 - Aeropyrum pernix (strain K1)
>gi|5103453|dbj|BAA78974.1| (AP000058) 311aa long
hypothetical protein [Aeropyrum pernix]
Length = 311
Score = 83.9 bits (204), Expect = 2e-15
Identities = 78/317 (24%), Positives = 144/317 (44%), Gaps = 23/317 (7%)
Query: 15 VVAFLVGAIALLILGYHPVAVYKVLFKYGY--SNVNYLLNKSTPLILTGLAFSIPAIAGV 72
V++ ++ I L +G P A + L K S V+Y + + L+ + AG+
Sbjct: 11 VLSTIIAGIMLSFIGPGPAAFVEGLIKAATTPSLVSYSVIYAAILVAAASGLVLSYRAGL 70
Query: 73 FNIGGESQLYVGAFLGLLTAYYTGNAVL-AIIVGIISGGLLGLFVGFLRVYRGINEVITA 131
IG E+Q+ A L Y G + A+ + I +G+ + LRVY +NE++++
Sbjct: 71 ITIGVEAQVTASAVAALYALAYAGLGLPGALTLAAIVSLAIGIVIAALRVYLDVNEILSS 130
Query: 132 IMVNWIFYYLIAYLIASRF----YNPEVSHESVPVPPQARIPGGVIFGIAVAFSILYYYI 187
+M+N+I Y++ L++ + S E+ P +A + AV+ + L + +
Sbjct: 131 LMINYIVLYMVNGLVSGPLREGAFTKTRSIEAFVGPLEAGL-------AAVSMAALSWIL 183
Query: 188 LYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGITYSIDDT 247
L T +G LR SG +P +A ++A+L S L AA G++L+ GI ++
Sbjct: 184 LERTSLGISLRASGPAPRAADIYTIGRARAMLLSSLPQSLAAAAAGLILLGGI-QTVFTA 242
Query: 248 LTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVI 307
L G G+ + + + P +I S+F + + G ++ G P L +
Sbjct: 243 LKQPQGYGYAAVLVSWMAELSPTTLIPVSLFFA-WIAGAGFILQAYGMPSSL-------V 294
Query: 308 VLALAIPYAYRMLLKRL 324
+L +I M+ +RL
Sbjct: 295 LLLQSIALTVYMVARRL 311
>pir||F70009 conserved hypothetical protein yufQ - Bacillus subtilis
>gi|1934814|emb|CAB07939.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635653|emb|CAB15146.1| (Z99120) similar
to hypothetical proteins [Bacillus subtilis]
Length = 319
Score = 83.5 bits (203), Expect = 3e-15
Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 26/247 (10%)
Query: 54 STPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAV------LAIIVGII 107
+ PLILT L +GV NIG E + +GAF +L + G + L+++ +
Sbjct: 18 AAPLILTALGGVFSERSGVVNIGLEGLMIIGAFTSVLFNLFFGQELGAAAPWLSLLAAMA 77
Query: 108 SGGLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVP-PQA 166
+G L L + ++ ++ + +N + L A L + + + +P P +
Sbjct: 78 AGALFSLIHAAAAISFRADQTVSGVAINMLA--LGATLFIVKLIYGKAQTDKIPEPFYKT 135
Query: 167 RIPG-------GVIFG--------IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAG 211
+IPG G IF +A+A + + ++IL+ T G ++R G P++A G
Sbjct: 136 KIPGLGDIPVLGKIFFSDVYYTSILAIALAFISWFILFKTPFGLRIRSVGEHPMAADTMG 195
Query: 212 FNPSKAILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIG 271
N K +++ G GLGG V T ++D T + I G GF + + G+ HPIG
Sbjct: 196 INVYKMRYIGVMISGLFGGLGGG--VYASTIALDFTHSTISGQGFIALAALVFGKWHPIG 253
Query: 272 IIFSSIF 278
+ +++F
Sbjct: 254 ALGAALF 260
>pir||B71179 hypothetical protein PH1711 - Pyrococcus horikoshii
>gi|3258142|dbj|BAA30825.1| (AP000007) 302aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 302
Score = 83.1 bits (202), Expect = 4e-15
Identities = 62/226 (27%), Positives = 104/226 (45%), Gaps = 5/226 (2%)
Query: 56 PLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLF 115
PL L + I +GV NIG E + AF + ++TGN L +I+G++ G L G+
Sbjct: 18 PLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLIIGLLVGALSGVL 77
Query: 116 VGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYN--PEVSHESVPVPPQARIPGGVI 173
G + VY +++I + N + Y + + S +++ S + +P+ + +
Sbjct: 78 HGIISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPSVDKIPMIGKGSFFVSPL 137
Query: 174 FGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGG 233
IA+ I+ ++ L T G KLR G P +A G N + + +LG + GLGG
Sbjct: 138 TPIAIIIGIVVWWWLERTPSGLKLRACGEDPRAAEAMGVNVYRVRFYATVLGASLTGLGG 197
Query: 234 VLLVLGITYSIDDTLTAIYGLGFTGI-GIGLLGRNHPIGIIFSSIF 278
LV+G ++A G GF + + N + II IF
Sbjct: 198 AYLVVGWIGQFTKFISA--GRGFIALANVAFSNWNPLMAIIGGFIF 241
>pir||B75162 ribose abc transporter, permease protein (rbsc-2) PAB0305 -
Pyrococcus abyssi (strain Orsay)
>gi|5457887|emb|CAB49377.1| (AJ248284) ribose ABC
transporter, permease protein (rbsC-2) [Pyrococcus
abyssi]
Length = 302
Score = 81.9 bits (199), Expect = 1e-14
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 2/186 (1%)
Query: 56 PLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLF 115
PL L + I +GV NIG E + AF + ++TGN L ++VG+I G L G
Sbjct: 18 PLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLLVGLIVGALAGAL 77
Query: 116 VGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYN--PEVSHESVPVPPQARIPGGVI 173
G + VY +++I + N + Y + + S +++ S E +P+ + +
Sbjct: 78 HGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPSVEKIPMLGKGSFFISPL 137
Query: 174 FGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGG 233
+A+ I+ ++ L T G +LR G P +A G N + + +LG + GLGG
Sbjct: 138 TPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHRVRFYATVLGASLTGLGG 197
Query: 234 VLLVLG 239
LV+G
Sbjct: 198 AYLVVG 203
>pir||F71338 probable ribose/galactose ABC transporter, permease protein
(rbsC-2) - syphilis spirochete
>gi|3322600|gb|AAC65311.1| (AE001212) ribose/galactose
ABC transporter, permease protein (rbsC-2) [Treponema
pallidum]
Length = 316
Score = 81.1 bits (197), Expect = 2e-14
Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 34/307 (11%)
Query: 44 YSNVNYLLNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAF----LGLLTAYYTGNAV 99
YS V L STP+++T L +GV NI E + GAF + +L YT A
Sbjct: 5 YSMVALTLVFSTPILITALGGLFSERSGVINIALEGLMMFGAFSTATVTVLCEPYTIAAP 64
Query: 100 -LAIIVGIISGGLLGLFVGFLRVYRGINEVITAIMVNW-------IFYYLIAYLIASRFY 151
+A+ VG+ + LF +L V +++I +N F +I ++ Y
Sbjct: 65 WIALGVGMAVAASVALFYAYLSVRLCSDQIIAGTAINLCATGMTVFFAQVIFGQQGTQAY 124
Query: 152 NPEVSHESVPVPPQARIPGGVIFG-------IAVAFSILYYYILYFTDIGFKLRVSGLSP 204
+ + S + + G ++F + L +Y+LY T G +R +G P
Sbjct: 125 SRGLVKTSYGFFSRIPVLGPMVFTHTYPTVYLGFVLVALAWYVLYRTPFGVHVRATGDQP 184
Query: 205 VSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLL 264
+ AG + + ++++ G AGLGG +L+L T I T+ + +G GF + +
Sbjct: 185 YAVDGAGLSVFRLRSAAVVISGLCAGLGGGVLIL--TQDIQYTVYSTHGTGFIALAALIS 242
Query: 265 GRNHPIGIIFSSI---FLSGLLIGGQWVELKTGAPPELADTLIGVIVLALAIPYAYRMLL 321
GR HP G++ +S+ F L + VEL P EL A+PYA +++
Sbjct: 243 GRWHPFGVLVTSVLFGFSQILNVYATSVELLKHLPIELFS----------ALPYALTVVV 292
Query: 322 KRLKEGR 328
L GR
Sbjct: 293 LLLFGGR 299
>gi|11498494 ribose ABC transporter, permease protein (rbsC-2) [Archaeoglobus
fulgidus] >gi|7450268|pir||A69361 ribose ABC
transporter, permease protein (rbsC-2) homolog -
Archaeoglobus fulgidus >gi|2649710|gb|AAB90349.1|
(AE001042) ribose ABC transporter, permease protein
(rbsC-2) [Archaeoglobus fulgidus]
Length = 310
Score = 79.2 bits (192), Expect = 6e-14
Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 22/246 (8%)
Query: 51 LNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGG 110
+ TPL+ L + +G+ N+G E + GAF G + TG+ L G++ GG
Sbjct: 15 IRAGTPLLYATLGEILTERSGILNLGLEGIMITGAFTGFAVSLATGSPWL----GVLCGG 70
Query: 111 LLGLFVGFLRVYRGI----NEVITAIMVNWIFYYLIAYLIASRFYNPEVSH--ESVPVPP 164
L G+ + F+ + I N+ IT +M+ + + +L R Y EV+ + V +P
Sbjct: 71 LAGMALAFVHAFFSITLRANQSITGLMLVLLGLGITGFL--GRNYIGEVAFYIDPVKIPV 128
Query: 165 QARIP--GGVIFG------IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSK 216
+ IP G ++F +A+ + + ++IL+ T G ++ +G P +A G N +
Sbjct: 129 LSDIPYIGEILFSHDPLAYLAIILAAIMWFILFRTRYGLEIIAAGEKPEAADSMGVNVDR 188
Query: 217 AILTSMLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSS 276
S LLGG G+GG L L + +TA G G+ + + + P +F +
Sbjct: 189 VRYLSTLLGGFLVGIGGAYLSLAYAKLWTEGMTA--GRGWICLALVIFSGWMPQRAVFGA 246
Query: 277 IFLSGL 282
GL
Sbjct: 247 YLFGGL 252
>pir||A75542 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457924|gb|AAF09837.1|AE001886_3 (AE001886)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 670
Score = 72.6 bits (175), Expect = 6e-12
Identities = 90/371 (24%), Positives = 142/371 (38%), Gaps = 96/371 (25%)
Query: 35 VYKVLFKYGYSNVNYL--LNKSTPLILTGLAFSIPAIAGVFNIGGESQLYV--------- 83
VY LF S +L L +TPLI TGL+ + G+FNIG QL +
Sbjct: 233 VYSTLFAPITSLNPFLDSLKLATPLIFTGLSVAFAFRTGLFNIGAPGQLTMGAIAAMLVG 292
Query: 84 --------------------------GAFLGLLTAYYTGNAVL-AIIVGIISGGLLGLFV 116
GA GLL A + + V+ I++ I+ G+ +
Sbjct: 293 VYAPASLGWLLLPLSIIAAGAGGALWGAIPGLLKARFGSSEVINTIMLNYIAAGIFVFLI 352
Query: 117 G-----------------------------------FLRVYRGINEVITAIMVNWIFYYL 141
G L + E A+ + W+F L
Sbjct: 353 GSNEFPFLGKTYNLPIKAEGYEAQSAELHEAARLPTMLDLLNVGKEGAMALSLGWLFA-L 411
Query: 142 IAYLIASRFYNPE-------------VSHESVPVPPQARIPGGVI---FGIAVAFSILYY 185
I Y +A F V + + I G + F +A+A L+
Sbjct: 412 ITYFVARPFLRRTRQGGLLAFIAALLVGALTWRIGVPINIAGSQLNASFLLALACVALFG 471
Query: 186 YILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGITYSID 245
+++ T G+ LR GLSP +A Y G + ++ + +M + G AGL G V G ++D
Sbjct: 472 TLMWRTATGYALRAVGLSPKAAEYGGISVARGTILAMTIAGMFAGLAGTHYVQG--GALD 529
Query: 246 D---TLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELK-TGAPPELAD 301
D +GF GI + L+G++ P G++ SS+ + GG +LK G ++
Sbjct: 530 DYRLKQNIPVNVGFDGIAVALMGQSTPAGVVASSLLFGTIDTGGVDADLKLDGVNKDIVT 589
Query: 302 TLIGVIVLALA 312
L +IVL +A
Sbjct: 590 VLKALIVLFIA 600
>pir||D83629 probable permease of ABC transporter PA0138 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9945967|gb|AAG03528.1|AE004451_9 (AE004451) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 308
Score = 71.0 bits (171), Expect = 2e-11
Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 10/220 (4%)
Query: 50 LLNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISG 109
++ TPL+L L + +GV N+G E + GA +G + A+ +G+ L +++ +++G
Sbjct: 13 MVRTGTPLLLVALGELVCERSGVLNLGQEGMMLFGAVIGFMVAFSSGSLWLGVLLAVLAG 72
Query: 110 GLLGLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVSHESVPVPPQARIP 169
LL + +Y N+V + + L +++ A+ P + +P +P
Sbjct: 73 MLLAALFAGVALYLNANQVACGLALTIFGVGLASFVGAAWVGKPLQGFAPLALPVLGELP 132
Query: 170 --GGVIFG------IAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTS 221
G ++F +++A ++L + G L+ G +P +A G + +
Sbjct: 133 LLGRMLFAQDALVYLSLALFAAVAWMLLRSRAGLVLQAVGENPDAASAMGLPVLRVRTLA 192
Query: 222 MLLGGAAAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGI 261
+L GGA AGL G L L T + +TA G G+ + +
Sbjct: 193 VLFGGAMAGLAGAYLSLAYTPMWAENMTA--GRGWIALAL 230
>gb|AAG19335.1| (AE005028) ribose ABC transporter permease; RbsC1 [Halobacterium
sp. NRC-1]
Length = 361
Score = 71.0 bits (171), Expect = 2e-11
Identities = 79/290 (27%), Positives = 123/290 (42%), Gaps = 41/290 (14%)
Query: 51 LNKSTPLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGG 110
L + P+ L L +GV NIG E L + +F +L A+ G A + +GG
Sbjct: 49 LRLAVPITLAALGGIFAEKSGVINIGLEGLLIISSFTAVLVAWALGGTTSAALWTGFAGG 108
Query: 111 LL------GLFVGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPE-------VSH 157
+L GLF Y +++I + V W+ +A +S + + S
Sbjct: 109 VLASVLLAGLFAVVCIKYEA-DQIIAGLAV-WLVALGLAPFASSVVFGGKNTTSINRFSE 166
Query: 158 ESVPVPPQARIPGGV-------------------IFGIAVAFSILYYYILYFTDIGFKLR 198
+VPV A + GV +FG AVA S +Y+L T G +
Sbjct: 167 WTVPVLHDAFVNSGVGILSYVGHVLLRANPIVYLMFG-AVAVS---WYVLNHTAFGRWVE 222
Query: 199 VSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGGVLLVLGITYS-IDDTLTAIYGLGFT 257
SG +P + AG N + S+L+ G +G+GG L +G S + + T I G GF
Sbjct: 223 ASGENPNALDTAGVNVHRVRYVSVLVSGLLSGMGGAALSVGHVGSFVGNGTTMIDGKGFI 282
Query: 258 GIGIGLLGRNHPIGIIFSSIFLSGLLIGGQWVELKTGAPPELADTLIGVI 307
I L G +P+G +++ SGL + ++ P E+ LI VI
Sbjct: 283 AIATYLFGNYNPLGTFGAAMLFSGL--ESLQIGIQQFTPYEVPSQLIQVI 330
>pir||G71341 conserved hypothetical integral membrane protein TP0301 - syphilis
spirochete >gi|3322576|gb|AAC65289.1| (AE001210)
conserved hypothetical integral membrane protein
[Treponema pallidum]
Length = 377
Score = 70.6 bits (170), Expect = 2e-11
Identities = 68/325 (20%), Positives = 136/325 (40%), Gaps = 30/325 (9%)
Query: 7 IFEVAISIVVAFLVGAIALLILGYHPVAVYKVLFKYGYSNVNY---LLNKSTPLILTGLA 63
+ I++++ V + +++ +P F +S Y L +K+ + L
Sbjct: 4 VINSCIAVLLGVAVMSAVIVLCSENPSVSLAAFFLKPFSTRGYIRALFHKAGLFVCMALG 63
Query: 64 FSIPAIAGVFNIGGESQLYVGAFL-GLLTAYYTGNAVL-----AIIVGIISGGLLGLFVG 117
S G+ N+GG+ Q+Y F+ LL Y G L A++ + G+L G
Sbjct: 64 ASCALKTGMINLGGDGQIYAAGFVTALLLREYWGVGFLLQWSVALLCALSVAGILACVSG 123
Query: 118 FLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYNPEVS-------HESVPVPPQAR--- 167
L+ + +E+IT+ +++ LI LI + +P + H + Q
Sbjct: 124 ILKAWLATSEMITSFLLSTACVPLIDALIITVTRDPAGNLLATAPVHSHFILQQQTSLFG 183
Query: 168 IPGGVIFGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGA 227
+P + + VA ++ ++ +T +G++ R+ G +P R+ GF + M+L GA
Sbjct: 184 VPAVLTYASLVALAVGCFFS--YTRVGYQFRICGKAPEFGRFVGFPVWATYVWGMVLSGA 241
Query: 228 AAGLGGVLLVLGITYSIDDTLTAIYGLGFTGIGIGLLGRNHPIGIIFSSIFLSGLLIGGQ 287
GL G V+G+ + + G+G+ + L+ H ++ + F +
Sbjct: 242 LFGLTGFFSVVGLFGTCYVGFSV--GMGYAALAHALIAHAHITVLVPLAFFFA------- 292
Query: 288 WVELKTGAPPELADTLIGVIVLALA 312
W+E + A A + V++ A
Sbjct: 293 WMETASEAAVLGAHLTVNVVLFLQA 317
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.148 0.434
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124233724
Number of Sequences: 2977
Number of extensions: 5610447
Number of successful extensions: 21283
Number of sequences better than 1.0e-10: 28
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 21204
Number of HSP's gapped (non-prelim): 31
length of query: 329
length of database: 189,106,746
effective HSP length: 52
effective length of query: 277
effective length of database: 157,985,422
effective search space: 43761961894
effective search space used: 43761961894
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)