BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0305 (rbsC-2) DE:ribose ABC transporter, permease protein
(rbsC-2)
(302 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75162 ribose abc transporter, permease protein (rbsc-2) PA... 598 e-170
pir||B71179 hypothetical protein PH1711 - Pyrococcus horikoshii ... 571 e-162
pir||C72493 probable ribose ABC transport system permease protei... 292 4e-78
gi|11498494 ribose ABC transporter, permease protein (rbsC-2) [A... 207 2e-52
pir||A72419 sugar ABC transporter, permease protein - Thermotoga... 204 1e-51
pir||F70009 conserved hypothetical protein yufQ - Bacillus subti... 174 1e-42
pir||F70184 ribose/galactose ABC transporter, permease protein (... 173 3e-42
pir||D83629 probable permease of ABC transporter PA0138 [importe... 172 5e-42
pir||F71338 probable ribose/galactose ABC transporter, permease ... 156 3e-37
gb|AAG19335.1| (AE005028) ribose ABC transporter permease; RbsC1... 155 5e-37
emb|CAC14153.1| (AJ245399) putative ribose ABC transporter [Sino... 127 2e-28
gb|AAC45346.1| (AF100324) putative polytopic protein [Mycoplasma... 126 3e-28
pir||F72759 hypothetical protein APE0067 - Aeropyrum pernix (str... 102 7e-21
pir||A82944 ribose/galactose ABC transporter UU013 [imported] - ... 101 1e-20
sp|P75514|Y121_MYCPN HYPOTHETICAL PROTEIN MG121 HOMOLOG (A65_ORF... 99 5e-20
emb|CAC14307.1| (AJ276209) putative permease 2 of an ABC transpo... 96 4e-19
sp|P47367|Y121_MYCGE HYPOTHETICAL PROTEIN MG121 >gi|1361557|pir|... 92 1e-17
pir||H72418 sugar ABC transporter, permease protein - Thermotoga... 90 2e-17
gi|11498493 ribose ABC transporter, permease protein (rbsC-1) [A... 86 4e-16
emb|CAC14306.1| (AJ276209) putative permease 1 of an ABC transpo... 85 8e-16
pir||C71179 hypothetical protein PH1712 - Pyrococcus horikoshii ... 83 5e-15
pir||E70184 ribose/galactose ABC transporter, permease protein (... 82 9e-15
pir||A75162 ribose abc transporter, permease protein (rbsc-1) PA... 82 9e-15
dbj|BAB07450.1| (AP001519) ribose ABC transporter (permease) [Ba... 73 3e-12
gb|AAC04783.1| (AF036920) sugar transport system permease homolo... 71 2e-11
pir||C83629 probable permease of ABC transporter PA0137 [importe... 69 8e-11
>pir||B75162 ribose abc transporter, permease protein (rbsc-2) PAB0305 -
Pyrococcus abyssi (strain Orsay)
>gi|5457887|emb|CAB49377.1| (AJ248284) ribose ABC
transporter, permease protein (rbsC-2) [Pyrococcus
abyssi]
Length = 302
Score = 598 bits (1524), Expect = e-170
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP 60
MISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP
Sbjct: 1 MISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP 60
Query: 61 YLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS 120
YLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS
Sbjct: 61 YLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS 120
Query: 121 VEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHR 180
VEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHR
Sbjct: 121 VEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHR 180
Query: 181 VRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGFI 240
VRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGFI
Sbjct: 181 VRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGFI 240
Query: 241 FGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKMPRALGKPYI 300
FGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKMPRALGKPYI
Sbjct: 241 FGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKMPRALGKPYI 300
Query: 301 KE 302
KE
Sbjct: 301 KE 302
>pir||B71179 hypothetical protein PH1711 - Pyrococcus horikoshii
>gi|3258142|dbj|BAA30825.1| (AP000007) 302aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 302
Score = 571 bits (1457), Expect = e-162
Identities = 276/302 (91%), Positives = 299/302 (98%)
Query: 1 MISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP 60
MI+D+LNILSNTL+SMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP
Sbjct: 1 MIADLLNILSNTLVSMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP 60
Query: 61 YLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS 120
YLGL++GL+VGAL+G LHG+ISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS
Sbjct: 61 YLGLIIGLLVGALSGVLHGIISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS 120
Query: 121 VEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHR 180
V+KIPM+GKGSFF+SPLTP+AI++GI+VWWWL +TPSGL+LRACGEDP+AAEAMGVNV+R
Sbjct: 121 VDKIPMIGKGSFFVSPLTPIAIIIGIVVWWWLERTPSGLKLRACGEDPRAAEAMGVNVYR 180
Query: 181 VRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGFI 240
VRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAI+GGFI
Sbjct: 181 VRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIIGGFI 240
Query: 241 FGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKMPRALGKPYI 300
FGFFDALAIYLPIKIQQ +GRVITAESNLFRTIPYLATLIIVA+IMKKV+MPRALGKPYI
Sbjct: 241 FGFFDALAIYLPIKIQQMSGRVITAESNLFRTIPYLATLIIVALIMKKVRMPRALGKPYI 300
Query: 301 KE 302
KE
Sbjct: 301 KE 302
>pir||C72493 probable ribose ABC transport system permease protein APE2586 -
Aeropyrum pernix (strain K1) >gi|5106292|dbj|BAA81603.1|
(AP000064) 301aa long hypothetical ribose ABC transport
system permease protein [Aeropyrum pernix]
Length = 301
Score = 292 bits (739), Expect = 4e-78
Identities = 148/304 (48%), Positives = 207/304 (67%), Gaps = 8/304 (2%)
Query: 1 MISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTG-N 59
++ D+ ++ +MVP+TLA++GEI +E++G+VNIGLEGI + SA+ + V TG
Sbjct: 4 VLEDLTSLALLAASAMVPITLASIGEIASERAGIVNIGLEGIMLASAWAAVAVYILTGWG 63
Query: 60 PYLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSP 119
P G L+G ++G G LHGV+SVYLKGDQI+ GVG N + G +++ +W + +SP
Sbjct: 64 PLAGYLLGALLGLSIGVLHGVVSVYLKGDQIVTGVGLNIFSAGATVVGTYMLWGTFSNSP 123
Query: 120 SVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVH 179
VE +P ISP+ PL++ G+IVW +L +T +GLRLR+CGEDP++AEAMGVNV
Sbjct: 124 PVEPMPGFVIAGVRISPMVPLSLAAGVIVWLFLYRTIAGLRLRSCGEDPRSAEAMGVNVA 183
Query: 180 RVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGF 239
+ A + GL GAYL + + G F K ++AGRGFIALANVAFS WNPL A++GG+
Sbjct: 184 LYQVAAAGFAGLMAGLAGAYLSIDYQGVFAKNMTAGRGFIALANVAFSGWNPLAALLGGY 243
Query: 240 IFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAII-MKKVKMPRALGKP 298
+FGF +ALAIYL I ++ TA SNL TIPY+ATL V ++ ++K +MP LG+P
Sbjct: 244 VFGFSEALAIYLNISLE------ATAASNLVNTIPYIATLAAVTLVALRKPRMPAWLGRP 297
Query: 299 YIKE 302
YIKE
Sbjct: 298 YIKE 301
>gi|11498494 ribose ABC transporter, permease protein (rbsC-2) [Archaeoglobus
fulgidus] >gi|7450268|pir||A69361 ribose ABC
transporter, permease protein (rbsC-2) homolog -
Archaeoglobus fulgidus >gi|2649710|gb|AAB90349.1|
(AE001042) ribose ABC transporter, permease protein
(rbsC-2) [Archaeoglobus fulgidus]
Length = 310
Score = 207 bits (521), Expect = 2e-52
Identities = 117/309 (37%), Positives = 186/309 (59%), Gaps = 17/309 (5%)
Query: 3 SDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYL 62
S + ++L++++ + PL A +GEI+TE+SG++N+GLEGI I AFT V+ TG+P+L
Sbjct: 5 SFLASLLASSIRAGTPLLYATLGEILTERSGILNLGLEGIMITGAFTGFAVSLATGSPWL 64
Query: 63 GLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGIS------ILSLVSIWHSHG 116
G+L G + G +H S+ L+ +Q I G+ L GI+ + V+ +
Sbjct: 65 GVLCGGLAGMALAFVHAFFSITLRANQSITGLMLVLLGLGITGFLGRNYIGEVAFYIDPV 124
Query: 117 SSPSVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGV 176
P + IP +G+ F PL LAI++ I+W+ L +T GL + A GE P+AA++MGV
Sbjct: 125 KIPVLSDIPYIGEILFSHDPLAYLAIILAAIMWFILFRTRYGLEIIAAGEKPEAADSMGV 184
Query: 177 NVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAIV 236
NV RVR+ +T+LG L G+GGAYL + + +T+ ++AGRG+I LA V FS W P A+
Sbjct: 185 NVDRVRYLSTLLGGFLVGIGGAYLSLAYAKLWTEGMTAGRGWICLALVIFSGWMPQRAVF 244
Query: 237 GGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIV--AIIMKKVKM--P 292
G ++FG D L+ L QATG I +L + +PY+ T++++ +++ K+ P
Sbjct: 245 GAYLFGGLDVLSFKL-----QATG--IEVSYHLMKMVPYVVTIVVLLFSVVRKRAAFGAP 297
Query: 293 RALGKPYIK 301
ALG PY++
Sbjct: 298 AALGIPYVR 306
>pir||A72419 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980595|gb|AAD35199.1|AE001696_13
(AE001696) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 319
Score = 204 bits (513), Expect = 1e-51
Identities = 112/316 (35%), Positives = 181/316 (56%), Gaps = 26/316 (8%)
Query: 7 NILSN------TLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP 60
NI SN TL + PL A++G + +E +GVVNI LEGI +L AF+S V+T++TGN
Sbjct: 9 NIFSNPLFYKLTLTASTPLLFASLGGVFSEVTGVVNIALEGIMLLGAFSSVVITYYTGNV 68
Query: 61 YLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSP- 119
+LG L+ + +G H S+ +G+QI++ +A G++ + I+ G +P
Sbjct: 69 WLGFLLSIPIGIGFSWFHAWASIKWRGNQIVSATALILVAQGLTGFLMEPIFGQPGQTPY 128
Query: 120 ----------SVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPK 169
+ IP +G+ ISP+ +A + W+ + KTP GLR+R+ GE+P+
Sbjct: 129 VGRIEEITLPGISSIPFIGEAIGTISPIVLIAFAMVFFAWFLIYKTPLGLRMRSVGENPE 188
Query: 170 AAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNW 229
AA+ +GV+V ++R++ ++ +L +GGA+L +G +G F + ++ GRGFIALA + NW
Sbjct: 189 AADTLGVDVFKIRYFGVLMSGALASMGGAFLSIGEVGNFRELMTGGRGFIALAAMILGNW 248
Query: 230 NPLMAIVGGFIFGFFDALAIYL---PIKIQQATGRVITAESNLFRTIPYLATLIIVAIIM 286
NP+ A+ +FG +ALA L PI AT + LF P++ TL++VA ++
Sbjct: 249 NPIGAMWACLMFGMSEALANQLQSSPILNVPATAK------PLFNLFPFVVTLVVVAGLI 302
Query: 287 KKVKMPRALGKPYIKE 302
+ + P A G PY KE
Sbjct: 303 GRTRPPAADGVPYEKE 318
>pir||F70009 conserved hypothetical protein yufQ - Bacillus subtilis
>gi|1934814|emb|CAB07939.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635653|emb|CAB15146.1| (Z99120) similar
to hypothetical proteins [Bacillus subtilis]
Length = 319
Score = 174 bits (437), Expect = 1e-42
Identities = 113/323 (34%), Positives = 167/323 (50%), Gaps = 33/323 (10%)
Query: 4 DILNILS----NTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGN 59
DI+ ILS TL+ PL L A+G + +E+SGVVNIGLEG+ I+ AFTS + G
Sbjct: 2 DIVQILSIIVPATLVYAAPLILTALGGVFSERSGVVNIGLEGLMIIGAFTSVLFNLFFGQ 61
Query: 60 ------PYLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWH 113
P+L LL + GAL +H ++ + DQ ++GV N LA G ++ + I+
Sbjct: 62 ELGAAAPWLSLLAAMAAGALFSLIHAAAAISFRADQTVSGVAINMLALGATLFIVKLIYG 121
Query: 114 SHGSSPSVE-----KIPMLGK----GSFFISPL---TPLAILVGIIVWWWLNKTPSGLRL 161
+ E KIP LG G F S + + LAI + I W+ L KTP GLR+
Sbjct: 122 KAQTDKIPEPFYKTKIPGLGDIPVLGKIFFSDVYYTSILAIALAFISWFILFKTPFGLRI 181
Query: 162 RACGEDPKAAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIAL 221
R+ GE P AA+ MG+NV+++R+ ++ GLGG FT +G+GFIAL
Sbjct: 182 RSVGEHPMAADTMGINVYKMRYIGVMISGLFGGLGGGVYASTIALDFTHSTISGQGFIAL 241
Query: 222 ANVAFSNWNPLMAIVGGFIFGFFDALAI---YLPIKIQQATGRVITAESNLFRTIPYLAT 278
A + F W+P+ A+ FGF +L+I LP+ ++ A PY+ T
Sbjct: 242 AALVFGKWHPIGALGAALFFGFAQSLSIIGSLLPLFKDIPNVYMLMA--------PYILT 293
Query: 279 LIIVAIIMKKVKMPRALGKPYIK 301
++ + + + P+A G PYIK
Sbjct: 294 ILALTGFIGRADAPKANGVPYIK 316
>pir||F70184 ribose/galactose ABC transporter, permease protein (rbsC-2) homolog
- Lyme disease spirochete >gi|2688599|gb|AAC67016.1|
(AE001168) ribose/galactose ABC transporter, permease
protein (rbsC-2) [Borrelia burgdorferi]
Length = 311
Score = 173 bits (433), Expect = 3e-42
Identities = 101/307 (32%), Positives = 160/307 (51%), Gaps = 14/307 (4%)
Query: 5 ILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGL 64
I+ ++S TLI+ L LA +G +I+EKSG++NIGLEGI + AF+ V + T +P +
Sbjct: 8 IIFLISETLINSQTLILAGLGGLISEKSGIINIGLEGIMTIGAFSGATVAYFTNDPLFSI 67
Query: 65 LVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPSVEKI 124
G + G + LH V +++LK DQII G+ N L I++ I+ S + P K+
Sbjct: 68 FAGGLAGLVLAILHAVFTIFLKSDQIITGMALNFLGPAIAVFISTLIFSSISTPPIEIKL 127
Query: 125 PMLGKG----SFFISPL------TPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAM 174
P+L G + FI + +AIL ++ T GLR+ A GE+P+ E++
Sbjct: 128 PILFDGILNKTSFIFQIFGKRYSVYIAILSVVLFHIVFKYTKIGLRINASGENPEVLESV 187
Query: 175 GVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMA 234
GV+V+++RF+ +L L G+ GA L + + ++ G+GFIA+ + F W PL
Sbjct: 188 GVSVNKIRFFCVLLSGFLAGVSGAVLTTVVASSYVQGVTGGQGFIAIVMLIFGKWTPLGV 247
Query: 235 IVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKMPRA 294
++G F+F F LAI L Q + + PYL ++ + KK P+
Sbjct: 248 LIGSFLFSFVKTLAIVL----AQLPFFSLIMPPKMLVITPYLIIILSLIFFSKKNYAPKF 303
Query: 295 LGKPYIK 301
LG Y K
Sbjct: 304 LGITYKK 310
>pir||D83629 probable permease of ABC transporter PA0138 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9945967|gb|AAG03528.1|AE004451_9 (AE004451) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 308
Score = 172 bits (431), Expect = 5e-42
Identities = 102/311 (32%), Positives = 178/311 (56%), Gaps = 26/311 (8%)
Query: 6 LNILSNTLISMV----PLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPY 61
+++L N L +MV PL L A+GE++ E+SGV+N+G EG+ + A +V F +G+ +
Sbjct: 3 IDLLDNLLFAMVRTGTPLLLVALGELVCERSGVLNLGQEGMMLFGAVIGFMVAFSSGSLW 62
Query: 62 LGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLV-SIWHSHG---- 116
LG+L+ ++ G L AL +++YL +Q+ G+ +G+ + S V + W
Sbjct: 63 LGVLLAVLAGMLLAALFAGVALYLNANQVACGLALT--IFGVGLASFVGAAWVGKPLQGF 120
Query: 117 ---SSPSVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEA 173
+ P + ++P+LG+ F L L++ + V W L ++ +GL L+A GE+P AA A
Sbjct: 121 APLALPVLGELPLLGRMLFAQDALVYLSLALFAAVAWMLLRSRAGLVLQAVGENPDAASA 180
Query: 174 MGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLM 233
MG+ V RVR A + G ++ GL GAYL + + + + ++AGRG+IALA V F++W L
Sbjct: 181 MGLPVLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWAENMTAGRGWIALALVVFASWRVLR 240
Query: 234 AIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMK-----K 288
++G ++FG L + + Q G I A NL +PY AT++++ ++ + +
Sbjct: 241 VLLGAWLFGLASILHL-----VAQGVGLSIPA--NLLAMLPYAATILVLVLLSRDALRTR 293
Query: 289 VKMPRALGKPY 299
+ P +LG+P+
Sbjct: 294 LYAPVSLGQPW 304
>pir||F71338 probable ribose/galactose ABC transporter, permease protein
(rbsC-2) - syphilis spirochete
>gi|3322600|gb|AAC65311.1| (AE001212) ribose/galactose
ABC transporter, permease protein (rbsC-2) [Treponema
pallidum]
Length = 316
Score = 156 bits (391), Expect = 3e-37
Identities = 94/310 (30%), Positives = 159/310 (50%), Gaps = 22/310 (7%)
Query: 7 NILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVT-----FHTGNPY 61
++++ TL+ P+ + A+G + +E+SGV+NI LEG+ + AF++ VT + P+
Sbjct: 6 SMVALTLVFSTPILITALGGLFSERSGVINIALEGLMMFGAFSTATVTVLCEPYTIAAPW 65
Query: 62 LGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS- 120
+ L VG+ V A + +SV L DQIIAG N A G+++ I+ G+
Sbjct: 66 IALGVGMAVAASVALFYAYLSVRLCSDQIIAGTAINLCATGMTVFFAQVIFGQQGTQAYS 125
Query: 121 ----------VEKIPMLGKGSFFIS-PLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPK 169
+IP+LG F + P L ++ + W+ L +TP G+ +RA G+ P
Sbjct: 126 RGLVKTSYGFFSRIPVLGPMVFTHTYPTVYLGFVLVALAWYVLYRTPFGVHVRATGDQPY 185
Query: 170 AAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNW 229
A + G++V R+R A V+ GLGG L++ Q+T + + G GFIALA + W
Sbjct: 186 AVDGAGLSVFRLRSAAVVISGLCAGLGGGVLILTQDIQYTVYSTHGTGFIALAALISGRW 245
Query: 230 NPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKV 289
+P +V +FGF L +Y + + LF +PY T++++ + +
Sbjct: 246 HPFGVLVTSVLFGFSQILNVY-----ATSVELLKHLPIELFSALPYALTVVVLLLFGGRG 300
Query: 290 KMPRALGKPY 299
+ PRA+G+PY
Sbjct: 301 EAPRAIGQPY 310
>gb|AAG19335.1| (AE005028) ribose ABC transporter permease; RbsC1 [Halobacterium
sp. NRC-1]
Length = 361
Score = 155 bits (389), Expect = 5e-37
Identities = 103/311 (33%), Positives = 160/311 (51%), Gaps = 36/311 (11%)
Query: 17 VPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP-----YLGLLVGLIVG 71
VP+TLAA+G I EKSGV+NIGLEG+ I+S+FT+ +V + G + G G++
Sbjct: 53 VPITLAALGGIFAEKSGVINIGLEGLLIISSFTAVLVAWALGGTTSAALWTGFAGGVLAS 112
Query: 72 ALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILS-------------------LVSIW 112
L L V+ + + DQIIAG+ +A G++ + V +
Sbjct: 113 VLLAGLFAVVCIKYEADQIIAGLAVWLVALGLAPFASSVVFGGKNTTSINRFSEWTVPVL 172
Query: 113 HSHGSSPSVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAE 172
H + V + +G +P+ L + W+ LN T G + A GE+P A +
Sbjct: 173 HDAFVNSGVGILSYVGHVLLRANPIVYLMFGAVAVSWYVLNHTAFGRWVEASGENPNALD 232
Query: 173 AMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQF----TKFISAGRGFIALANVAFSN 228
GVNVHRVR+ + ++ L+G+GGA L VG +G F T I G+GFIA+A F N
Sbjct: 233 TAGVNVHRVRYVSVLVSGLLSGMGGAALSVGHVGSFVGNGTTMID-GKGFIAIATYLFGN 291
Query: 229 WNPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKK 288
+NPL +F ++ L I IQQ T + S L + IPY+ T+++V +++ +
Sbjct: 292 YNPLGTFGAAMLFSGLES----LQIGIQQFTPYEV--PSQLIQVIPYV-TVVVVLVLVGR 344
Query: 289 VKMPRALGKPY 299
++P A G+ Y
Sbjct: 345 TRIPEAAGEYY 355
>emb|CAC14153.1| (AJ245399) putative ribose ABC transporter [Sinorhizobium meliloti]
Length = 269
Score = 127 bits (316), Expect = 2e-28
Identities = 89/280 (31%), Positives = 140/280 (49%), Gaps = 34/280 (12%)
Query: 39 LEGIFILSAFTSTVVTFHTGNPYLGLLVGLIVGALAGA----LHGVISVYLKGDQIIAGV 94
LEG+ ++ A F L + V + GALAGA L GV+++ +Q AG+
Sbjct: 1 LEGMMLMGA----AFAFWAVIAGLPMPVAIAAGALAGAATSLLFGVLALTFLTNQYAAGL 56
Query: 95 GFNSLAYGISILSLVSIWHSHGSSPS----------VEKIPMLGKGSFFISPLTPLAILV 144
G+S + GS+P + IP++G F P+ LAI +
Sbjct: 57 ALAIFGSGVSAF----LGRGFGSAPIDALKRVHIPFLSDIPVVGPMFFRFDPMVYLAIGM 112
Query: 145 GIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGW 204
++ W+L +T GL LR GE P+ + A+G V R+R+ A + G + GL GAYL V +
Sbjct: 113 FGLITWFLYRTKGGLILRTIGESPETSHAIGYPVIRIRYLAVLFGGLMAGLAGAYLSVAY 172
Query: 205 IGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVIT 264
+ + ++AG+G+I+LA V F+ W PL ++G ++FG L + QA G I
Sbjct: 173 TPLWVENMTAGKGWISLALVVFATWRPLRVLIGAWLFGGMTILQLQ-----GQALG--IA 225
Query: 265 AESNLFRTIPYLATLIIVAIIMKK-----VKMPRALGKPY 299
S L +PYLAT+I++ II + + P +L KP+
Sbjct: 226 VPSELLSALPYLATIIVLVIISQNRQLLTLHFPASLAKPF 265
>gb|AAC45346.1| (AF100324) putative polytopic protein [Mycoplasma fermentans]
Length = 326
Score = 126 bits (314), Expect = 3e-28
Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 35/323 (10%)
Query: 8 ILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTF---------HTG 58
IL+ T+ LTLA + I +E+ G+ NI + G I A +++F T
Sbjct: 7 ILTTTIFMFSALTLATLSGIFSERVGITNIAVNGFMIFGAAMYALISFLMTDVVFKGKTL 66
Query: 59 NPYLGLLVGLIVGALAGA---LHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSH 115
+P+ LL G L+ L G ++ LK DQ ++G N LA G++ + L+ + +
Sbjct: 67 SPWFQLLYFAFAGILSSGFALLFGFATIKLKSDQSVSGFAMNILAVGVASILLLFVKKAQ 126
Query: 116 GSSPSVEKIPMLGKGSFFISP-------LTPLAILVGIIV----WWWLNKTPSGLRLRAC 164
+ M G+ +SP + L + + +I+ W++LNKT GLR +A
Sbjct: 127 QGG---DYFQMRGQTELALSPNVDNWKNIISLKLFLALIIAGGSWFFLNKTKWGLRYKAI 183
Query: 165 GEDPKAAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFIS-AGRGFIALAN 223
GE+P+AA+ G+NV + ++ + GL GA + QF+ +I G GF+ALA
Sbjct: 184 GENPQAADVAGINVFKYKWLGIAYSGFIAGLAGAIFIQCKTNQFSLYIEVGGLGFLALAI 243
Query: 224 VAFS----NWNPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATL 279
+ S +W L+ I+ FI+G F I + + G ++ + L T+P++ TL
Sbjct: 244 MITSGWKISWTLLICIIFSFIYG-FSYFGISWLERFESMKG--VSRFAELLYTLPFIITL 300
Query: 280 IIVAIIMKKVKM-PRALGKPYIK 301
I+ MK +M P A G+PY K
Sbjct: 301 GIMIAKMKSKQMGPAAAGRPYDK 323
>pir||F72759 hypothetical protein APE0067 - Aeropyrum pernix (strain K1)
>gi|5103455|dbj|BAA78976.1| (AP000058) 281aa long
hypothetical protein [Aeropyrum pernix]
Length = 281
Score = 102 bits (251), Expect = 7e-21
Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 24/278 (8%)
Query: 8 ILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLLVG 67
++S L +++PL+LAA+GE + E++G VN+G++G+ + A + TG+ LL G
Sbjct: 5 VISAVLTTLIPLSLAALGEAVLERTGRVNLGVDGLMAVGAAVGALAGVETGS----LLAG 60
Query: 68 LIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISI-LSLVSIWHSHGSSPSVEKIPM 126
L GALAG + G +S + D++ G N + G+ + + + + GS + P+
Sbjct: 61 LAAGALAGGV-GSLSYIILTDRL----GVNMIVAGLLVFFAGIGLGDLVGSKIAGRPGPV 115
Query: 127 LGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHRVRFYAT 186
L + + A+ + +I++ T +G LR GE+P AA+ GV V R+R A
Sbjct: 116 LTSLYTTAATIGIAAVALHLILY----NTVTGTALRVVGENPAAAKERGVPVWRLRLSAA 171
Query: 187 VLGASLTGLGGAYLVVGW-IGQFTKFISAGRGFIALANVAFSNWNPLMAIVGGFIFGFFD 245
++ GL G +V G G++ ++AG G++AL V W P +G I
Sbjct: 172 LVQGLSAGLAGYIMVAGLSYGKWYSGVTAGLGWVALGIVILGYWTP----IGVLIASTAV 227
Query: 246 ALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVA 283
+ + +I ATG A++ IPY+ LI++A
Sbjct: 228 STVFSMRTQIAAATGIPPLADA-----IPYILVLILLA 260
>pir||A82944 ribose/galactose ABC transporter UU013 [imported] - Ureaplasma
urealyticum >gi|6898958|gb|AAF30418.1|AE002101_1
(AE002101) ribose/galactose ABC transporter [Ureaplasma
urealyticum]
Length = 309
Score = 101 bits (249), Expect = 1e-20
Identities = 86/316 (27%), Positives = 146/316 (45%), Gaps = 33/316 (10%)
Query: 6 LNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFT----STVVTFHTGNP- 60
L+++++ I L L A+ E+ G+ NI + G I+ A ST++ + G
Sbjct: 4 LSLINDASIYAAILILGALSGFFCERVGIANISINGQMIIGALVFTLFSTIIYKYMGTKT 63
Query: 61 ---YLGLLVGLIVGALA---GALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHS 114
Y ++ +I G L L G +++ LK +QIIAG N LA G++ +
Sbjct: 64 ETEYTFIVCLIIAGILTIPTSLLFGFLTIKLKTNQIIAGTAINLLASGVATFVTYPLGDK 123
Query: 115 HGSSPSVEK----IPMLGKG--SFFISPLTPL--AILVGIIVWWWLNKTPSGLRLRACGE 166
S+ + +G G + +I + L +L+ I + + KTP GLRL A GE
Sbjct: 124 IADKTSLSSDYLGLMKIGDGINTIYIGSILILIAVVLITIGLMIMMKKTPFGLRLYAIGE 183
Query: 167 DPKAAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAF 226
+P AA+A G+NV++ ++ A + + G+GG + F + G GF+ALA +
Sbjct: 184 NPNAADAQGINVYKYQWIAVSISGFIAGIGGGLYMYASRSPFAGEV-GGIGFLALAILIA 242
Query: 227 SNWN-PLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAII 285
W PL+A+V A A+ I + ++ + + IPY+ TLI +
Sbjct: 243 GAWRIPLIAVVS-------IAFAV-----ITKTFSQIDKIPQEIGKLIPYVITLIALISF 290
Query: 286 MKKVKMPRALGKPYIK 301
K P+ +G P+ K
Sbjct: 291 SKYSVAPKNVGIPFDK 306
>sp|P75514|Y121_MYCPN HYPOTHETICAL PROTEIN MG121 HOMOLOG (A65_ORF311)
>gi|2146152|pir||S73899 high affinity ribose transport
protein rbsC - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674273|gb|AAB96221.1| (AE000056) sugar
(ribose/galactose) ABC transporter permease subunit
[Mycoplasma pneumoniae]
Length = 311
Score = 99.5 bits (244), Expect = 5e-20
Identities = 84/319 (26%), Positives = 150/319 (46%), Gaps = 47/319 (14%)
Query: 9 LSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTF------HTGNPYL 62
L N L L LA + ++E+ G+VNI + G + +++++ + P
Sbjct: 11 LDNWLFVAPALLLAVLSGYLSERVGIVNIAINGGMVFGGMFLSLMSYAFVPNANDSAPSW 70
Query: 63 GLLVGL----IVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISIL------SLVS-- 110
L + + I + G L G+ ++ LK D +I G G N L GI+ SL++
Sbjct: 71 SLAISIPLSVIFASAVGFLFGIAAIKLKADHVIVGTGVNLLGTGINFFVAQNARSLLNDT 130
Query: 111 ---IWHSH---GSSPSVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRAC 164
+ +S G+S S+E I + AI+ ++VW+ +N T +GLR RA
Sbjct: 131 DLRVRYSFVRTGNSVSIEGIAIFA-----------FAIIFVLLVWYLMNFTKTGLRYRAV 179
Query: 165 GEDPKAAEAMGVNVHRVRFYATVLGASLTGLGG-AYLVVGWIGQFTKFISAGRGFIALAN 223
GE+P + G++V++ +++ + + L G + + + F+ +G GFIA+A
Sbjct: 180 GENPNVIDTQGISVYKYQWFGVMASTMVAALAGCCFALSPQVPSFSSGDVSGFGFIAIAI 239
Query: 224 VAFSNWNPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESN-LFRTIPYLATLIIV 282
+ S W + +IV +F ALA L TG V A + L RTIP++ +L+++
Sbjct: 240 MIISMWRIIPSIVISPLF----ALAYVL------TTGVVGNANNTYLLRTIPFIISLLVM 289
Query: 283 AIIMKKVKMPRALGKPYIK 301
+ P+ +GK + K
Sbjct: 290 MVFGYLNVGPKNVGKHFDK 308
>emb|CAC14307.1| (AJ276209) putative permease 2 of an ABC transporter [Clostridium
sticklandii]
Length = 176
Score = 96.3 bits (236), Expect = 4e-19
Identities = 57/173 (32%), Positives = 91/173 (51%), Gaps = 12/173 (6%)
Query: 1 MISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP 60
+++ + +LS TL+ PL ++G + +E SGVVNIGLEG+ + AF V TGNP
Sbjct: 4 VMTSLAILLSTTLMYSTPLIFTSLGGVFSENSGVVNIGLEGMMTIGAFVGATVAVFTGNP 63
Query: 61 YLGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPS 120
++ + + G L LH + S+ +Q+I+G+ N LA GI+I ++ +PS
Sbjct: 64 WMAFIGAGVAGGLFALLHAIASISFNANQVISGIAINFLAPGIAIFMSKMLFDGSTMTPS 123
Query: 121 V---EKIPMLGKG---SFFISPL------TPLAILVGIIVWWWLNKTPSGLRL 161
+ +K+P G S F+ + T LA + I W+ L KT GLR+
Sbjct: 124 IPLDQKMPRYLNGLLPSGFLDTVFNTYATTYLAFIFVAIAWFVLYKTRFGLRI 176
>sp|P47367|Y121_MYCGE HYPOTHETICAL PROTEIN MG121 >gi|1361557|pir||D64213 hypothetical
protein homolog MG121 - Mycoplasma genitalium
>gi|3844711|gb|AAC71339.1| (U39692) conserved
hypothetical protein [Mycoplasma genitalium]
Length = 306
Score = 91.7 bits (224), Expect = 1e-17
Identities = 72/302 (23%), Positives = 136/302 (44%), Gaps = 34/302 (11%)
Query: 19 LTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNP----------YLGLLVGL 68
L LA + + E+ G++NI + G + ++++ N ++ + + +
Sbjct: 17 LLLAVLSGYLAERVGIINIAINGGMVFGGLFMALLSYGFTNNLNQSAPSWSLFITIPLSV 76
Query: 69 IVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSS--------PS 120
+ ++ G L + +V L+ D +I G G N LA GI++ + + P
Sbjct: 77 LFSSVIGCLFALAAVKLRADHVIVGTGINLLASGITLFISQNAASLFSDTTLRVRYLFPI 136
Query: 121 VEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHR 180
+ + G F S L L+G VW+ ++ T +GLR RA GE+P + G++V++
Sbjct: 137 QTTVSIEAIGVFVFSLL-----LIGF-VWYLMSFTKTGLRYRAVGENPNVIDTQGISVYK 190
Query: 181 VRFYATVLGASLTGLGGAYLVVGWIG-QFTKFISAGRGFIALANVAFSNWNPLMAIVGGF 239
++ + + GL G+ V+ F G GFIA+A + S W + +I G
Sbjct: 191 YQWIGAICSMMVAGLSGSLFVLSVSNFPFNSGDVNGLGFIAIAIMIISMWRIIPSIFIGL 250
Query: 240 IFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKMPRALGKPY 299
IF + Y+ Q + + S L RTIP++ +L+++ + P+ +GK +
Sbjct: 251 IFAY-----AYVFTNSQIGS----NSNSYLLRTIPFIISLLVMLLFGFLNVAPKNIGKHF 301
Query: 300 IK 301
K
Sbjct: 302 DK 303
>pir||H72418 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980594|gb|AAD35198.1|AE001696_12
(AE001696) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 344
Score = 90.5 bits (221), Expect = 2e-17
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 13/248 (5%)
Query: 6 LNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGN--PYLG 63
+ L++T+I PL L + ++G+ NIG EG I+ +TVV H P L
Sbjct: 48 IQALADTVIKTTPLILTGLAVGFGFRAGLFNIGAEGQMIMGGILATVVGMHMRGIPPALA 107
Query: 64 LLVGLIVGALAGALHGVISVYLKGD----QIIAGVGFNSLAYGIS---ILSLVSIWHSHG 116
+ + +I G L GA I+ YLK ++++ + N +A IS I +++
Sbjct: 108 IPLTMIAGMLGGAAWASIAGYLKAKTGAHEVVSTIMLNWIATYISSYLITGPLAVGSGTP 167
Query: 117 SSP----SVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAE 172
SP S + P++ G+ ++ ++IL ++++ L KT +G ++A G +P AAE
Sbjct: 168 KSPEIAPSAKLPPIVTVGALEMTSGILISILSAVVIYIVLEKTKTGYEVKAVGFNPYAAE 227
Query: 173 AMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPL 232
G+N+ + + +L GL GA V+G +F +S G+GF ++ +P+
Sbjct: 228 YGGINISKNIVMCMAISGALAGLAGALEVMGLHHRFLGTLSGGKGFDGISIALIGQNHPI 287
Query: 233 MAIVGGFI 240
I F+
Sbjct: 288 GIIFASFL 295
>gi|11498493 ribose ABC transporter, permease protein (rbsC-1) [Archaeoglobus
fulgidus] >gi|7451345|pir||H69360 ribose ABC
transporter, permease protein (rbsC-1) homolog -
Archaeoglobus fulgidus >gi|2649711|gb|AAB90350.1|
(AE001042) ribose ABC transporter, permease protein
(rbsC-1) [Archaeoglobus fulgidus]
Length = 332
Score = 86.2 bits (210), Expect = 4e-16
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 15/248 (6%)
Query: 9 LSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLLVGL 68
L+ + PL L + I ++G+ NIG EG + AF ++VV ++ P +L +
Sbjct: 47 LAELCVKTTPLILTGLAVAIPLRAGLWNIGAEGQLYMGAFAASVVALYSNLPGYAMLPAM 106
Query: 69 I-VGALAGALHGVISVYLKG----DQIIAGVGFNSLA--------YGISILSLVSIWHSH 115
VGAL G I LK ++II+ + N +A YG V +
Sbjct: 107 FAVGALFGMGWAAIPAVLKAKFDLNEIISTLLLNYVAIYWVEYMVYGPMRGKEVYNFPYT 166
Query: 116 GSSPSVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMG 175
P +P F + +A+++ +++++ + KT G L+ G +P+AAE G
Sbjct: 167 DLFPDAATLPRFFGTRFHLGFF--IAVVIALVIYYIIRKTDFGFSLKVVGANPRAAEYAG 224
Query: 176 VNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANVAFSNWNPLMAI 235
++ ++ Y+ +LG L G+ G V G + IS G G+ + ++ NPL+ +
Sbjct: 225 ISRQKMVIYSMLLGGMLAGIAGMIEVSGIQLRLRPSISTGYGYAGIPVALLASGNPLLVM 284
Query: 236 VGGFIFGF 243
+ +FGF
Sbjct: 285 LSAALFGF 292
>emb|CAC14306.1| (AJ276209) putative permease 1 of an ABC transporter [Clostridium
sticklandii]
Length = 354
Score = 85.4 bits (208), Expect = 8e-16
Identities = 77/296 (26%), Positives = 132/296 (44%), Gaps = 20/296 (6%)
Query: 12 TLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVT-FHTGNPYLGLLVGLIV 70
T++ PL L + ++G+ NIG EG +I+ + + +V F G + + + +I
Sbjct: 56 TIVYATPLILTGLSVAFAFRTGLFNIGAEGQYIIGSMAAVLVGYFFDGPAIIHIPLAIIA 115
Query: 71 GALAGALHGVISVYLKG----DQIIAGVGFNSLAYGIS-ILSLVSIWHSHGSSPSVEKIP 125
G LAGAL I+ LK +++I+ + N +A +S ++ + + S S
Sbjct: 116 GCLAGALWAAIAGLLKAKFGINEVISTIMLNWIALYLSNFVTTIDGFRLPNSEASYSIKE 175
Query: 126 MLGKGSFFISPLTP---------LAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGV 176
G F+ PL +AI+ I+V++ + KT G LRA G + AAE G+
Sbjct: 176 TASIGISFLKPLVGTAKVNWGIVIAIIAAILVYYIIFKTTLGYELRAVGYNKHAAEYGGI 235
Query: 177 NVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISA-GRGFIALANVAFSNWNPLMAI 235
NV++ + + L GL G V+G + T +A G GF +A +P +
Sbjct: 236 NVNKSIVISMAIAGGLAGLAGVTQVLGVSHKITILAAAEGYGFDGMAVSLIGANSPFGVL 295
Query: 236 VGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAIIMKKVKM 291
+ G +FG Y K+Q + I ++A IV I++ K K+
Sbjct: 296 LAGLLFGGLK----YGGSKLQTIGAPPEVVSIVIGSIIYFIAASSIVKILINKFKV 347
>pir||C71179 hypothetical protein PH1712 - Pyrococcus horikoshii
>gi|3258143|dbj|BAA30826.1| (AP000007) 337aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 337
Score = 82.7 bits (201), Expect = 5e-15
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 4/228 (1%)
Query: 9 LSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLLVGL 68
L+ L PL + + I +GV NIG E + AF + ++TGN L L+VG
Sbjct: 51 LNYLLNKSTPLIMTGLAFSIPAIAGVFNIGGESQLYIGAFLGLLTAYYTGNSILALIVGA 110
Query: 69 IVGALAGALHGVISVYLKGDQIIAGVGFNSLAYG-ISILSLVSIWHSHGSSPSVEKIPML 127
+ G L G G + VY +++I + N + Y I+ L ++ S S+ P
Sbjct: 111 LSGGLLGLFVGALRVYRGINEVITAIMVNWIFYYLIAYLIAAKFYNPEVSHESIPVPPEA 170
Query: 128 GKGSF-FISPLTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHRVRFYAT 186
GS +S + LA+L I ++ L T G +LR G P +A+ G + + +
Sbjct: 171 RIGSIGGVSLIFLLAVLFAIFYYYLLYFTDVGYKLRVSGLSPASAKYAGFDPSKAIVISM 230
Query: 187 VLGASLTGLGGAYLVVGWIGQFTKFISA--GRGFIALANVAFSNWNPL 232
LG GLGG L++G ++A G GF + NP+
Sbjct: 231 FLGGVAAGLGGVLLILGITYSIDDTLTAIYGLGFTGIGIGLLGRNNPI 278
>pir||E70184 ribose/galactose ABC transporter, permease protein (rbsC-1) homolog
- Lyme disease spirochete >gi|2688600|gb|AAC67017.1|
(AE001168) ribose/galactose ABC transporter, permease
protein (rbsC-1) [Borrelia burgdorferi]
Length = 383
Score = 81.9 bits (199), Expect = 9e-15
Identities = 80/316 (25%), Positives = 140/316 (43%), Gaps = 38/316 (12%)
Query: 9 LSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTG-NPYLGLLVG 67
L L PL + I+ K+G+ NIG+EG FIL + + + + P L ++
Sbjct: 63 LGYVLSYSAPLIFTGLSIGISLKAGLFNIGVEGQFILGSIVALIASVLLDLPPILHVITI 122
Query: 68 LIVGALAGALHGVISVYLKG----DQIIAGVGFNSLAYGISIL----SLVSIWHSHGSSP 119
I+ LA G++ YLK ++I+G+ FN + + ++ + S + +S S P
Sbjct: 123 FIITFLASGSLGILIGYLKAKFNISEVISGIMFNWILFHLNNIILDFSFIKRDNSDFSKP 182
Query: 120 SVEKIPMLGKGSFFISP----------------LTP------LAILVGIIVWWWLNKTPS 157
E + S+ +SP P L I+ I++W+ LNKT
Sbjct: 183 IKESAYIDFLASWKLSPEGLAYRSSHPFVNELLKAPLHFGIILGIIFAILIWFLLNKTII 242
Query: 158 GLRLRACGEDPKAAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKF-ISAGR 216
G ++ A G + +A+ MG+NV V ++ L A++ GL GA ++G K G
Sbjct: 243 GFKINATGSNIEASRCMGINVKAVLIFSMFLSAAVAGLAGAIQLMGVNKAIFKLSYMQGI 302
Query: 217 GFIALANVAFSNWNPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYL 276
GF +A N +P+ I +F ++ +Y ++Q G + S + I +
Sbjct: 303 GFNGIAASLMGNNSPIGIIFSSILF----SILLYGSSRVQSLMGLPSSIVSLMMGIIVLV 358
Query: 277 --ATLIIVAIIMKKVK 290
A+ + I++K VK
Sbjct: 359 ISASYFLNKIVLKGVK 374
>pir||A75162 ribose abc transporter, permease protein (rbsc-1) PAB0304 -
Pyrococcus abyssi (strain Orsay)
>gi|5457886|emb|CAB49376.1| (AJ248284) ribose ABC
transporter, permease protein (rbsC-1) [Pyrococcus
abyssi]
Length = 329
Score = 81.9 bits (199), Expect = 9e-15
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 2/186 (1%)
Query: 18 PLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLLVGLIVGALAGAL 77
PL L + I +GV NIG E + AF + ++TGN L ++VG+I G L G
Sbjct: 56 PLILTGLAFSIPAIAGVFNIGGESQLYVGAFLGLLTAYYTGNAVLAIIVGIISGGLLGLF 115
Query: 78 HGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPSVEKIPMLGKGSFFISPL 137
G + VY +++I + N + Y + + S +++ S E +P+ + +
Sbjct: 116 VGFLRVYRGINEVITAIMVNWIFYYLIAYLIASRFYN--PEVSHESVPVPPQARIPGGVI 173
Query: 138 TPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHRVRFYATVLGASLTGLGG 197
+A+ I+ ++ L T G +LR G P +A G N + + +LG + GLGG
Sbjct: 174 FGIAVAFSILYYYILYFTDIGFKLRVSGLSPVSARYAGFNPSKAILTSMLLGGAAAGLGG 233
Query: 198 AYLVVG 203
LV+G
Sbjct: 234 VLLVLG 239
>dbj|BAB07450.1| (AP001519) ribose ABC transporter (permease) [Bacillus halodurans]
Length = 314
Score = 73.4 bits (177), Expect = 3e-12
Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 7/200 (3%)
Query: 2 ISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPY 61
+S+I+N+L I+ L A G +G +++ + I LS+ + + ++ +P
Sbjct: 37 LSNIMNVLRQVSIN----ALIAFGMTFVILTGGIDLSVGAILALSSAVTAWLMVNSVDPI 92
Query: 62 LGLLVGLIVGALAGALHGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPSV 121
L +L+GL+ G L GA++G++ K IA + ++ G+++ + + S
Sbjct: 93 LAVLIGLLAGTLFGAINGLVISKGKVAPFIATLATMTIYRGLTL--VFTDGRPISGFESS 150
Query: 122 EKIPMLGKGSFFISPLTPLAILVG-IIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHR 180
MLG+G FF P+ + +++ II++ L KT G R+ A G + +AA G+ V R
Sbjct: 151 TMFEMLGRGYFFGIPVPAVTMIISFIILYLILKKTTFGRRVYAVGGNQEAAILSGIKVDR 210
Query: 181 VRFYATVLGASLTGLGGAYL 200
++ Y L L+ L G L
Sbjct: 211 IKIYVYSLTGFLSALAGMIL 230
>gb|AAC04783.1| (AF036920) sugar transport system permease homolog [Rhizobium
tropici]
Length = 332
Score = 71.0 bits (171), Expect = 2e-11
Identities = 60/250 (24%), Positives = 120/250 (48%), Gaps = 17/250 (6%)
Query: 18 PLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHTGNPYLGLLVGLIVGALAGAL 77
PL +A + + + + +++ + G+F S + ++ ++ P++ +L+ +++G G +
Sbjct: 67 PLGIAVLAQSLVMRVRSIDLSVSGVFAFSIYLASSGLLNSYPPFVTVLMTIVIGLAVGLI 126
Query: 78 HGVISVYLKGDQIIAGVGFNSLAYGISILSLVSIWHSHGSSPSVEKIPMLGKGSFF-ISP 136
+G + Y++ +IA + +++ G I+ +S + GS+PS ++ L G+ + +S
Sbjct: 127 NGALVAYVRASAVIATLSVSAILIG--IVQFMSSGRAPGSTPSWLRV--LTSGNIYGLSY 182
Query: 137 LTPLAILVGIIVWWWLNKTPSGLRLRACGEDPKAAEAMGVNVHRVRFYATVLGASLTGLG 196
+ I + ++V G RA G +P+AAE G+ + R F++ L +LTG+
Sbjct: 183 SVIVWIGISVVVALSFRFLILGRYFRAVGNNPRAAEITGIPLARTIFFSHTLAGTLTGIA 242
Query: 197 G----AYLVVGWIGQ-FTKFISAGRGFIALANVAF-----SNWNPLMAIVG-GFIFGFFD 245
+ L VG I F F++A I L V F P +A+V F+F
Sbjct: 243 ALVQVSALAVGTIKPGFDTFMNALAATI-LGGVTFGVDRGGVAGPFVAVVAFSFLFAMLT 301
Query: 246 ALAIYLPIKI 255
I P K+
Sbjct: 302 VFGIQEPGKL 311
>pir||C83629 probable permease of ABC transporter PA0137 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9945966|gb|AAG03527.1|AE004451_8 (AE004451) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 365
Score = 68.7 bits (165), Expect = 8e-11
Identities = 70/307 (22%), Positives = 125/307 (39%), Gaps = 27/307 (8%)
Query: 2 ISDILNILSNTLISMVPLTLAAVGEIITEKSGVVNIGLEGIFILSAFTSTVVTFHT--GN 59
+SD+ L L+ +P+ L A+G + ++ V NIG EG ++ A + V
Sbjct: 54 LSDLYG-LGELLVKAMPILLCALGLALAYQARVWNIGAEGQLLVGALAGSAVAIQLLDWQ 112
Query: 60 PYLGLLVGLIVGALAGALHGVISVYLK----GDQIIAGVGFNSLAYGISILSLVSIWHSH 115
L L+ G AGAL + +L+ ++I+ + N +A + + + H
Sbjct: 113 SRWALAWVLLAGTAAGALWAGFAAWLRTRFNANEILTTIMLNYIALNLLLYGV----HGP 168
Query: 116 GSSPSVEKIP---MLGKGS----FFISPLTPLAILVGII----VWWWLNKTPSGLRLRAC 164
P P + G+ S F L L G++ VW ++ G ++R
Sbjct: 169 LKDPDGFNFPQSALFGEASRLPALFEDSRVHLGALFGLLALAAVWVLAQRSFLGFQVRVL 228
Query: 165 GEDPKAAEAMGVNVHRVRFYATVLGASLTGLGGAYLVVGWIGQFTKFISAGRGFIALANV 224
G D +AA +G R+ ++ + +L GL G V G IGQ +S G G+ A+
Sbjct: 229 GLDRRAAGFVGFREKRLVWFVLLFSGALAGLAGVCEVAGPIGQLVPQVSPGYGYAAITVA 288
Query: 225 AFSNWNPLMAIVGGFIFGFFDALAIYLPIKIQQATGRVITAESNLFRTIPYLATLIIVAI 284
NP + + +YL + Q + + A S LF+ + L +
Sbjct: 289 FLGRLNPFGILCASLLMAL-----LYLGGEAAQMSLNLPLALSGLFQGMMLFFLLACDVL 343
Query: 285 IMKKVKM 291
I+ + ++
Sbjct: 344 ILYRPRL 350
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.143 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108003287
Number of Sequences: 2977
Number of extensions: 4610864
Number of successful extensions: 17130
Number of sequences better than 1.0e-10: 26
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 17067
Number of HSP's gapped (non-prelim): 27
length of query: 302
length of database: 189,106,746
effective HSP length: 52
effective length of query: 250
effective length of database: 157,985,422
effective search space: 39496355500
effective search space used: 39496355500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)