BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0311 (pfpI) DE:intracellular protease (pfpI)
(166 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75163 intracellular proteinase (pfpi) PAB0311 - Pyrococcus... 340 5e-93
sp|O59413|PFPI_PYRHO PROTEASE I >gi|7449372|pir||C71178 probable... 310 8e-84
sp|Q51732|PFPI_PYRFU PROTEASE I >gi|2129411|pir||JC6003 intracel... 305 3e-82
pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular P... 301 4e-81
pir||F72722 hypothetical protein APE0319 - Aeropyrum pernix (str... 221 4e-57
gi|11498880 intracellular protease (pfpI) [Archaeoglobus fulgidu... 186 1e-46
gb|AAK41330.1| Intracellular proteinase [Sulfolobus solfataricus] 171 3e-42
emb|CAC11607.1| (AL445064) probable intracellular proteinase I [... 153 8e-37
pir||A70355 proteinase I - Aquifex aeolicus >gi|2983230|gb|AAC06... 141 6e-33
pir||E65105 hypothetical 20.3 kD protein in sohA-mtr intergenic ... 134 8e-31
sp|P45470|YHBO_ECOLI HYPOTHETICAL 18.9 KDA PROTEIN IN SOHA-MTR I... 134 8e-31
sp|P80876|GS18_BACSU GENERAL STRESS PROTEIN 18 (GSP18) >gi|74493... 132 3e-30
dbj|BAB06744.1| (AP001517) general stress protein [Bacillus halo... 130 9e-30
pir||E83601 proteinase PfpI PA0355 [imported] - Pseudomonas aeru... 130 1e-29
sp|O06006|YRAA_BACSU HYPOTHETICAL 16.8 KD PROTEIN IN ADHA-SACC I... 128 3e-29
pir||T34745 probable proteinase pfpI - Streptomyces coelicolor >... 122 2e-27
sp|Q53719|YLY1_STAAU HYPOTHETICAL 18.6 KD PROTEIN IN LYTA 3'REGI... 120 7e-27
pir||F75423 proteinase I - Deinococcus radiodurans (strain R1) >... 112 2e-24
gb|AAF26988.1|AC018363_33 (AC018363) unknown protein [Arabidopsi... 106 2e-22
pir||A83103 conserved hypothetical protein PA4336 [imported] - P... 103 1e-21
gb|AAD56430.1|AF158699_2 (AF158699) unknown [Burkholderia cepacia] 102 3e-21
pir||D83125 probable proteinase PA4171 [imported] - Pseudomonas ... 100 1e-20
sp|Q58377|Y967_METJA HYPOTHETICAL PROTEIN MJ0967 >gi|2128604|pir... 92 4e-18
dbj|BAB16486.1| (AP002861) hypothetical protein [Oryza sativa] 80 2e-14
pir||T47619 hypothetical protein T14E10.170 - Arabidopsis thalia... 77 1e-13
gb|AAF57086.1| (AE003775) CG1349 gene product [Drosophila melano... 75 7e-13
gb|AAC79625.1| (AC005770) unknown protein [Arabidopsis thaliana] 74 1e-12
dbj|BAA97062.1| (AP000370) emb|CAA17570.1~gene_id:K15M2.13~simil... 72 4e-12
pir||D70177 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate bi... 71 8e-12
pir||T03871 hypothetical protein C49G7.11 - Caenorhabditis elega... 70 1e-11
gb|AAF69547.1|AC008007_22 (AC008007) F12M16.18 [Arabidopsis thal... 70 2e-11
>pir||H75163 intracellular proteinase (pfpi) PAB0311 - Pyrococcus abyssi
(strain Orsay) >gi|5457901|emb|CAB49391.1| (AJ248284)
intracellular protease (pfpI) [Pyrococcus abyssi]
Length = 166
Score = 340 bits (863), Expect = 5e-93
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD 60
MRVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD
Sbjct: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD 60
Query: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY
Sbjct: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
Query: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK
Sbjct: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
>sp|O59413|PFPI_PYRHO PROTEASE I >gi|7449372|pir||C71178 probable intracellular
proteinase - Pyrococcus horikoshii
>gi|3258135|dbj|BAA30818.1| (AP000007) 166aa long
hypothetical intracellular proteinase [Pyrococcus
horikoshii]
Length = 166
Score = 310 bits (785), Expect = 8e-84
Identities = 146/166 (87%), Positives = 159/166 (94%)
Query: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD 60
M+VL L+A++FEDVELIYPYHRLKEEGHEV +ASF+RG ITGKHGY+V VDL F++VNP+
Sbjct: 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPE 60
Query: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
EFDALVLPGGRAPERVRLNEKAV IA+KMFSEGKPVASICHGPQILISAGVLRGR+GTSY
Sbjct: 61 EFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSY 120
Query: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
PGIKDDMINAGV+WVDAEVVVDGNWVSSRVP DLYAWMREFVKLLK
Sbjct: 121 PGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLLK 166
>sp|Q51732|PFPI_PYRFU PROTEASE I >gi|2129411|pir||JC6003 intracellular proteinase I (EC
3.4.-.-) - Pyrococcus furiosus
>gi|1373331|gb|AAB04694.1| (U57642) protease I
[Pyrococcus furiosus]
Length = 166
Score = 305 bits (772), Expect = 3e-82
Identities = 142/166 (85%), Positives = 159/166 (95%)
Query: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD 60
M++L LSA++FEDVELIYPYHRLKEEGHEV +ASF++GVITGKHGY+V VDL F+EVNPD
Sbjct: 1 MKILFLSANEFEDVELIYPYHRLKEEGHEVYIASFEKGVITGKHGYSVKVDLTFDEVNPD 60
Query: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
EFDALVLPGGRAPERVRLNEKAVEIA+KMF+EGKPVA+ICHGPQILISAGVL+GR+GTSY
Sbjct: 61 EFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSY 120
Query: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
GI+DDMINAGV+W+D EVVVDGNWVSSR PGDLYAWMREFVKLLK
Sbjct: 121 IGIRDDMINAGVEWIDREVVVDGNWVSSRHPGDLYAWMREFVKLLK 166
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
>gi|11513903|pdb|1G2I|B Chain B, Crystal Structure Of A
Novel Intracellular Protease From Pyrococcus Horikoshii
At 2 A Resolution >gi|11513904|pdb|1G2I|C Chain C,
Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 301 bits (762), Expect = 4e-81
Identities = 142/165 (86%), Positives = 155/165 (93%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPDE 61
+VL L+A++FEDVELIYPYHRLKEEGHEV +ASF+RG ITGKHGY+V VDL F++VNP+E
Sbjct: 2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEE 61
Query: 62 FDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYP 121
FDALVLPGGRAPERVRLNEKAV IA+K FSEGKPVASICHGPQILISAGVLRGR+GTSYP
Sbjct: 62 FDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQILISAGVLRGRKGTSYP 121
Query: 122 GIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
GIKDD INAGV+WVDAEVVVDGNWVSSRVP DLYAW REFVKLLK
Sbjct: 122 GIKDDXINAGVEWVDAEVVVDGNWVSSRVPADLYAWXREFVKLLK 166
>pir||F72722 hypothetical protein APE0319 - Aeropyrum pernix (strain K1)
>gi|5103958|dbj|BAA79274.1| (AP000059) 180aa long
hypothetical proteinase I [Aeropyrum pernix]
Length = 180
Score = 221 bits (557), Expect = 4e-57
Identities = 108/165 (65%), Positives = 130/165 (78%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPDE 61
R LI+SAD FEDVEL+YPY+RL E G E LVA+ RG I GK GY V L+FEEV P+E
Sbjct: 3 RALIISADGFEDVELLYPYYRLVEAGFETLVAAPSRGEIKGKMGYKVEAKLSFEEVKPEE 62
Query: 62 FDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYP 121
FD LV+PGGRAPERVRL+E A+ I + F + KPVA+ICHGPQ+LISAGV++GRR TSY
Sbjct: 63 FDVLVIPGGRAPERVRLHEAALNIVRHFFEKNKPVATICHGPQVLISAGVVKGRRLTSYW 122
Query: 122 GIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
G+KDD+I AG +WVD VVVDGN VSSR P D+ WMREF++LL+
Sbjct: 123 GVKDDVIAAGGNWVDEPVVVDGNLVSSRYPPDIPYWMREFMRLLE 167
>gi|11498880 intracellular protease (pfpI) [Archaeoglobus fulgidus]
>gi|6136633|sp|O28987|YC81_ARCFU HYPOTHETICAL PROTEIN
AF1281 >gi|7449373|pir||H69409 intracellular proteinase
I (EC 3.4.-.-) pfpI homolog - Archaeoglobus fulgidus
>gi|2649300|gb|AAB89965.1| (AE001016) intracellular
protease (pfpI) [Archaeoglobus fulgidus]
Length = 168
Score = 186 bits (468), Expect = 1e-46
Identities = 93/166 (56%), Positives = 123/166 (74%)
Query: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD 60
MRVLIL+ ++FED+EL YP +RL+EEG EV VAS V GK GY V DL +E+V +
Sbjct: 1 MRVLILAENEFEDLELFYPLYRLREEGLEVKVASSSLEVRVGKKGYQVRPDLTYEDVKVE 60
Query: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
++ LV+PGG++PERVR+NE+AVEI K GKPVA+ICHGPQ+LISA ++GRR TS+
Sbjct: 61 DYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSW 120
Query: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
GI+DD+I AG + D VVVDGN ++SR+P DL + E +K+LK
Sbjct: 121 IGIRDDLIAAGALYEDRPVVVDGNVITSRMPDDLPYFCGELIKILK 166
>gb|AAK41330.1| Intracellular proteinase [Sulfolobus solfataricus]
Length = 173
Score = 171 bits (430), Expect = 3e-42
Identities = 85/166 (51%), Positives = 118/166 (70%), Gaps = 1/166 (0%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVA-SFKRGVITGKHGYTVNVDLAFEEVNPD 60
+VL L ++FED+EL+YP++R+ EEG + ++A + GKHGYTV D+AF++V P+
Sbjct: 5 KVLFLVGEEFEDIELLYPFYRVMEEGFKPVIAWKEANSKVIGKHGYTVISDIAFKDVRPE 64
Query: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
++ ALV+PGGR PE +R E+ I +K F KPVA+ICHGPQILISA +++GR+ TS
Sbjct: 65 DYIALVIPGGRGPEHIRTLEEVKNITRKFFELKKPVAAICHGPQILISANLVKGRKLTSV 124
Query: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
IKDD+I AG +VD +VVVD N +SSRVP DL A+ +K LK
Sbjct: 125 NSIKDDVIAAGGIYVDNDVVVDENLISSRVPSDLPAFASTLIKALK 170
>emb|CAC11607.1| (AL445064) probable intracellular proteinase I [Thermoplasma
acidophilum]
Length = 186
Score = 153 bits (384), Expect = 8e-37
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 14/180 (7%)
Query: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEVLVAS------------FKRG--VITGKHGY 46
+RVLIL+ D E +E++YP R+KEEG EV VA+ F+ G T K GY
Sbjct: 2 VRVLILTGDAGESLEVMYPLQRMKEEGFEVDVAAPEKKKIQLVVHDFEEGFDTYTEKPGY 61
Query: 47 TVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQIL 106
+ DLAF++V+P ++DAL++PGGRAPE +R ++ + I K F + PVA +CH P L
Sbjct: 62 KLQADLAFKDVDPSKYDALIIPGGRAPEYIRNDKDFIRIVKYFFEKHSPVAELCHAPLAL 121
Query: 107 ISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
+AGVL+GR +YP + D+ AG +VD V+DGN VS+R D WMR F+KLLK
Sbjct: 122 AAAGVLKGRTTAAYPALAPDVAIAGGQFVDGAAVIDGNLVSARAWPDHPEWMRAFIKLLK 181
>pir||A70355 proteinase I - Aquifex aeolicus >gi|2983230|gb|AAC06827.1|
(AE000698) protease I [Aquifex aeolicus]
Length = 167
Score = 141 bits (351), Expect = 6e-33
Identities = 71/165 (43%), Positives = 101/165 (61%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPDE 61
+VLI + EDVE IYPY R KEEG EV+ A+ K G GK G T D ++V E
Sbjct: 3 KVLIFLEELVEDVEFIYPYLRFKEEGFEVVSAAPKLGEYKGKKGMTFRPDKTIKDVYHQE 62
Query: 62 FDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYP 121
FD + +PGG AP+R+R + + I KK + GK V ++CHGP +LISA V++G++ T +
Sbjct: 63 FDCVFIPGGYAPDRLRRYPEVLHIVKKHYDSGKLVCAVCHGPWVLISAKVVKGKKVTGFF 122
Query: 122 GIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
IKDD+INAG ++ V VDGN +++ P + M+ + LK
Sbjct: 123 AIKDDLINAGANYTGKPVEVDGNLITATDPKSMLEMMKVIISRLK 167
>pir||E65105 hypothetical 20.3 kD protein in sohA-mtr intergenic region -
Escherichia coli (strain K-12) >gi|606093|gb|AAA57956.1|
(U18997) ORF_o186 [Escherichia coli]
>gi|1789543|gb|AAC76187.1| (AE000396) orf, hypothetical
protein [Escherichia coli K12]
Length = 186
Score = 134 bits (333), Expect = 8e-31
Identities = 73/167 (43%), Positives = 106/167 (62%), Gaps = 3/167 (1%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRG-VITGKHGY-TVNVDLAFEEVNP 59
++ +L D+FED E P ++ GHEV+ + G + GK G +V +D + +EV P
Sbjct: 18 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTP 77
Query: 60 DEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTS 119
EFDAL+LPGG +P+ +R + + V + + GKPV +ICHGPQ+LISA V+RGR+ T+
Sbjct: 78 AEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTA 137
Query: 120 YPGIKDDMINAGVDWVDAEVVVD-GNWVSSRVPGDLYAWMREFVKLL 165
I D+ NAG ++ D EVVVD V+SR P DL A+ RE ++LL
Sbjct: 138 VKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 184
>sp|P45470|YHBO_ECOLI HYPOTHETICAL 18.9 KDA PROTEIN IN SOHA-MTR INTERGENIC REGION
Length = 172
Score = 134 bits (333), Expect = 8e-31
Identities = 73/167 (43%), Positives = 106/167 (62%), Gaps = 3/167 (1%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRG-VITGKHGY-TVNVDLAFEEVNP 59
++ +L D+FED E P ++ GHEV+ + G + GK G +V +D + +EV P
Sbjct: 4 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTP 63
Query: 60 DEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTS 119
EFDAL+LPGG +P+ +R + + V + + GKPV +ICHGPQ+LISA V+RGR+ T+
Sbjct: 64 AEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTA 123
Query: 120 YPGIKDDMINAGVDWVDAEVVVD-GNWVSSRVPGDLYAWMREFVKLL 165
I D+ NAG ++ D EVVVD V+SR P DL A+ RE ++LL
Sbjct: 124 VKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 170
>sp|P80876|GS18_BACSU GENERAL STRESS PROTEIN 18 (GSP18) >gi|7449376|pir||H69808 conserved
hypothetical protein yfkM - Bacillus subtilis
>gi|2626825|dbj|BAA23403.1| (D83967) YfkM [Bacillus
subtilis] >gi|2633109|emb|CAB12614.1| (Z99108) similar
to hypothetical proteins [Bacillus subtilis]
Length = 172
Score = 132 bits (328), Expect = 3e-30
Identities = 71/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRG-VITGKHGYT-VNVDLAFEEVNP 59
++ ++ FED E P KE GHE+ V ++G + GK G V VD + ++VN
Sbjct: 4 KIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDDVNS 63
Query: 60 DEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTS 119
+FDAL++PGG +P+++R +++ V+ K ++ KPV +ICHGPQ+LI+A L GR+ T
Sbjct: 64 SDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATG 123
Query: 120 YPGIKDDMINAGVDWVDAEVVV-DGNWVSSRVPGDLYAWMREFVKLLK 166
Y I+ DM NAG D VD EVVV V+SR P D+ A+ RE + LL+
Sbjct: 124 YTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIPAFNRESLALLE 171
>dbj|BAB06744.1| (AP001517) general stress protein [Bacillus halodurans]
Length = 171
Score = 130 bits (324), Expect = 9e-30
Identities = 69/167 (41%), Positives = 104/167 (61%), Gaps = 3/167 (1%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGV-ITGKHGY-TVNVDLAFEEVNP 59
++ ++ + FED E P KE GH ++ ++G+ + GK G T+ +D + +EV
Sbjct: 4 KIAVVVTNLFEDSEYTEPVKAFKEAGHSIVTIEKEKGIKVKGKQGESTITIDASIDEVTE 63
Query: 60 DEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTS 119
D FDAL++PGG +P+ +R +++ V AK K + +ICHGPQ+LI+AGVL+GR T
Sbjct: 64 DAFDALLIPGGFSPDILRADDRFVAFAKAFADAKKTIMAICHGPQLLINAGVLKGRDVTG 123
Query: 120 YPGIKDDMINAGVDWVDAEVVV-DGNWVSSRVPGDLYAWMREFVKLL 165
Y I D+ NAG ++ D EVVV GN V+SR P DL A+ RE + +L
Sbjct: 124 YKSIAVDLRNAGANFYDQEVVVCGGNLVTSRTPDDLPAFNRESLNVL 170
>pir||E83601 proteinase PfpI PA0355 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9946205|gb|AAG03744.1|AE004473_6 (AE004473)
protease PfpI [Pseudomonas aeruginosa]
Length = 179
Score = 130 bits (323), Expect = 1e-29
Identities = 75/168 (44%), Positives = 103/168 (60%), Gaps = 5/168 (2%)
Query: 3 VLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGY----TVNVDLAFEEVN 58
V L D FE VEL P L++ G V + S K G + G + + VD FE+ +
Sbjct: 10 VAALVTDGFEQVELTGPKKALEDAGATVRILSDKAGEVRGWNHHQPAEAFRVDGTFEDAS 69
Query: 59 PDEFDALVLPGGRA-PERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRG 117
D++DAL+LPGG +++R KA E+A + KPVA ICHG +LISAG+++GR
Sbjct: 70 LDDYDALLLPGGVINSDQIRSLAKAQELAIRAEQASKPVAVICHGAWLLISAGLVQGRTL 129
Query: 118 TSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLL 165
TS+P +KDD+ NAG WVD EV VDG VSSR P D+ A+ R F+++L
Sbjct: 130 TSWPSLKDDINNAGGHWVDQEVAVDGKLVSSRKPEDIPAFNRRFIEIL 177
>sp|O06006|YRAA_BACSU HYPOTHETICAL 16.8 KD PROTEIN IN ADHA-SACC INTERGENIC REGION
>gi|7449374|pir||A69970 conserved hypothetical protein
yraA - Bacillus subtilis >gi|2108267|emb|CAA63466.1|
(X92868) yraA [Bacillus subtilis]
>gi|2635148|emb|CAB14644.1| (Z99117) similar to
hypothetical proteins [Bacillus subtilis]
Length = 154
Score = 128 bits (319), Expect = 3e-29
Identities = 62/149 (41%), Positives = 93/149 (61%), Gaps = 1/149 (0%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGV-ITGKHGYTVNVDLAFEEVNPD 60
++ +L DQFED+E P +E G+ V+ + G +TGKHG V +D A +V+
Sbjct: 4 KIAVLVTDQFEDIEYTSPVKAYEEAGYSVVAIDLEAGKEVTGKHGEKVKIDKAISDVDAS 63
Query: 61 EFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSY 120
+FDAL++PGG +P+ +R +++ E AK KPV +ICHGPQ+LI +L+G+ T Y
Sbjct: 64 DFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGY 123
Query: 121 PGIKDDMINAGVDWVDAEVVVDGNWVSSR 149
I+ D+INAG ++ DAEVVV N V +
Sbjct: 124 RSIRKDLINAGANYKDAEVVVSHNIVDKQ 152
>pir||T34745 probable proteinase pfpI - Streptomyces coelicolor
>gi|3861447|emb|CAA22052.1| (AL033505) putative protease
[Streptomyces coelicolor A3(2)]
Length = 180
Score = 122 bits (304), Expect = 2e-27
Identities = 72/172 (41%), Positives = 101/172 (57%), Gaps = 10/172 (5%)
Query: 1 MRVLILSADQ-FEDVELIYPYHRLKEEGHEVLVASFKRGVITG----KHGYTVNVDLAFE 55
MR+ L+A + E VEL P+ KE GH+ ++ S + G I G T VD
Sbjct: 1 MRIAFLTAPEGVEQVELTEPWRAAKEAGHDPVLVSTQSGEIQGFDHLDKADTFPVDEVVG 60
Query: 56 EVNPDEFDALVLPGGRA-PERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRG 114
E++ D F LVLPGG A P+ +R++EKAV K F++G+PVA+ICH P L+ A V+RG
Sbjct: 61 EISADAFGGLVLPGGVANPDFLRMDEKAVAFVKDFFTQGRPVAAICHAPWTLVEADVVRG 120
Query: 115 RRGTSYPGIKDDMINAGVDWVDAEVVV----DGNWVSSRVPGDLYAWMREFV 162
R TS+P ++ D+ NAG WVD +V V D V+SR P DL A+ ++
Sbjct: 121 RTMTSWPSLRTDLRNAGATWVDEQVQVCDAGDNVLVTSRKPDDLEAFCETYL 172
>sp|Q53719|YLY1_STAAU HYPOTHETICAL 18.6 KD PROTEIN IN LYTA 3'REGION (ORF1)
>gi|310602|gb|AAA18514.1| (L19300) ORF1 [Staphylococcus
aureus]
Length = 171
Score = 120 bits (299), Expect = 7e-27
Identities = 67/168 (39%), Positives = 97/168 (56%), Gaps = 3/168 (1%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEG-HEVLVASFKRGVITGKHGYTVNVDLAFEEVNPD 60
+V I+ A++FED+E P L+ G + V++ + GKHG V VD+ E P+
Sbjct: 4 KVAIILANEFEDIEYSSPKEALENAGFNTVVIGDTANSEVVGKHGEKVTVDVGIAEAKPE 63
Query: 61 EFDALVLPGGRAPERVRLNEKAV--EIAKKMFSEGKPVASICHGPQILISAGVLRGRRGT 118
++DAL++PGG +P+ +R + + AK P +ICHGPQILI L+GR T
Sbjct: 64 DYDALLIPGGFSPDHLRGDTEGRYGTFAKYFTKNDVPTFAICHGPQILIDTDDLKGRTLT 123
Query: 119 SYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
+ ++ D+ NAG VD VVVD N V+SRVP DL + RE VK L+
Sbjct: 124 AVLNVRKDLSNAGAHVVDESVVVDNNIVTSRVPDDLDDFNREIVKQLQ 171
>pir||F75423 proteinase I - Deinococcus radiodurans (strain R1)
>gi|6458942|gb|AAF10772.1|AE001969_1 (AE001969) protease
I [Deinococcus radiodurans]
Length = 190
Score = 112 bits (278), Expect = 2e-24
Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHG-----YTVNVDLAFEE 56
++ IL+AD E++EL P ++ G + S + G I G VD E
Sbjct: 11 KIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSE 70
Query: 57 VNPDEFDALVLPGGRA-PERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGR 115
V ++D L+LPGG P+++RL E A++ + M+ GKP+A+ICHGP L G+ +G
Sbjct: 71 VQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGL 130
Query: 116 RGTSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVK 163
+ TS+P +K ++ AG WVD E V D V+SR P DL A+ ++ V+
Sbjct: 131 KMTSWPSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVE 178
>gb|AAF26988.1|AC018363_33 (AC018363) unknown protein [Arabidopsis thaliana]
Length = 388
Score = 106 bits (262), Expect = 2e-22
Identities = 61/166 (36%), Positives = 92/166 (54%), Gaps = 20/166 (12%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEV--LVASFKRG--------------VITGKHG 45
R+L L D ED E+ P+ L+ G +V + K G + K G
Sbjct: 199 RILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPG 258
Query: 46 YTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQI 105
+T + F+++ +DALV+PGGRAPE + LNE + I K+ + KPVASICHG QI
Sbjct: 259 HTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQI 318
Query: 106 LISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEVV----VDGNWVS 147
L +AGVL+GR+ T+YP +K +++ G W++ + + DGN V+
Sbjct: 319 LAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVT 364
Score = 96.7 bits (237), Expect = 1e-19
Identities = 62/183 (33%), Positives = 94/183 (50%), Gaps = 20/183 (10%)
Query: 3 VLILSADQFEDVELIYPYHRLKEEGHEV--LVASFKRG--VITGKH------------GY 46
VLIL D ED E++ P+ L+ G V + K G T H G+
Sbjct: 7 VLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGH 66
Query: 47 TVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQIL 106
++ F+EV+ ++D LV+PGGRAPE + L VE+ K+ GKP+ASICHG IL
Sbjct: 67 NFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLIL 126
Query: 107 ISAGVLRGRRGTSYPGIKDDMINAGVDWVDA----EVVVDGNWVSSRVPGDLYAWMREFV 162
+A + GR+ T+Y + ++ AG WV+ VVDG+ +++ +++ FV
Sbjct: 127 AAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFV 186
Query: 163 KLL 165
K L
Sbjct: 187 KAL 189
>pir||A83103 conserved hypothetical protein PA4336 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950562|gb|AAG07724.1|AE004850_2 (AE004850)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 194
Score = 103 bits (255), Expect = 1e-21
Identities = 61/185 (32%), Positives = 103/185 (54%), Gaps = 23/185 (12%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEV-LVASFKRGVITGK----------------- 43
++L+L D ED E + P+ L+ GH+V V KR + +
Sbjct: 6 KILMLVGDYAEDYETMVPFQALQMVGHQVHAVCPDKRAGQSVRTAIHDFEGDQTYSEKPG 65
Query: 44 HGYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGP 103
H +T+N D F + +++DAL++PGGRAPE +RLNE+ + + + + KP+A++CHG
Sbjct: 66 HNFTLNAD--FAQARAEDYDALLIPGGRAPEYLRLNEQVLALVRDFDAARKPIAAVCHGA 123
Query: 104 QILISAGVLRGRRGTSYPGIKDDMINAGVDWVDA---EVVVDGNWVSSRVPGDLYAWMRE 160
Q+L +AGVL+GR ++YP ++ AG ++VD + VDG+ V++ AW+
Sbjct: 124 QLLAAAGVLQGRACSAYPACAPEVRLAGGEYVDLPPDQAHVDGHLVTAPAWPAHPAWLAR 183
Query: 161 FVKLL 165
F++ L
Sbjct: 184 FLEAL 188
>gb|AAD56430.1|AF158699_2 (AF158699) unknown [Burkholderia cepacia]
Length = 197
Score = 102 bits (251), Expect = 3e-21
Identities = 59/183 (32%), Positives = 97/183 (52%), Gaps = 19/183 (10%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEV-LVASFKRG---------------VITGKHG 45
++L L+ D ED E + P+ L+ GH V V KR T K G
Sbjct: 9 KILFLTGDFAEDYETMVPFQALQAVGHHVDAVCPGKRAGDKVKTAIHDFEGDQTYTEKPG 68
Query: 46 YTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQI 105
+ ++ F++V+ +DAL + GGRAPE +RL+ + + + GKP+A+ICH Q+
Sbjct: 69 HQFTLNATFDDVDASRYDALAIAGGRAPEYLRLDPNVIALVRAFAEAGKPIAAICHAAQL 128
Query: 106 LISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEV---VVDGNWVSSRVPGDLYAWMREFV 162
L +A V+RG+R ++YP ++ AG ++ D V V D +V++ V + AW+ +F+
Sbjct: 129 LAAADVIRGKRISAYPACAPEVKLAGGEYADIPVDAAVTDAPFVNAPVWAENPAWVSQFL 188
Query: 163 KLL 165
LL
Sbjct: 189 ALL 191
>pir||D83125 probable proteinase PA4171 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950379|gb|AAG07558.1|AE004833_9
(AE004833) probable protease [Pseudomonas aeruginosa]
Length = 187
Score = 100 bits (246), Expect = 1e-20
Identities = 61/166 (36%), Positives = 94/166 (55%), Gaps = 11/166 (6%)
Query: 3 VLILSADQ-FEDVELIYPYHRLKEEGHEVLVASFKRG-----VITGKHGYTVNVDLAFEE 56
VL+++A+ E EL+ P LK++G V A+ + G V + VN D +
Sbjct: 10 VLVITANTGIERDELLEPLKTLKQQGATVTHATIEGGEAQTWVHDSEKDLIVNSDARLQG 69
Query: 57 VNPDEFDALVLPGGRA-PERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGR 115
+ +++D L++PGG + +R + +A + ++ GK VA+ICHGP +LI AGV RG+
Sbjct: 70 LRAEDYDLLLVPGGTVNADTLRQDSEARRLVREFSEAGKTVAAICHGPWLLIDAGVARGK 129
Query: 116 RGTSYPGIKDDMINAGVDWVDAEVVV--DGNW--VSSRVPGDLYAW 157
TSY ++ D+ NAG DWVD V V W ++SR PGDL A+
Sbjct: 130 TLTSYSSVRIDLTNAGADWVDTRVKVCPANGWTLITSRNPGDLQAF 175
>sp|Q58377|Y967_METJA HYPOTHETICAL PROTEIN MJ0967 >gi|2128604|pir||G64420 hypothetical
protein MJ0967 - Methanococcus jannaschii
>gi|1499805|gb|AAB98972.1| (U67540) intracellular
protease (pfpI) [Methanococcus jannaschii]
Length = 205
Score = 92.1 bits (225), Expect = 4e-18
Identities = 49/152 (32%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 3 VLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPDEF 62
+++++ F D EL P + G +V V S +G G G + V+ +VNPD++
Sbjct: 35 LMVIAPKDFRDEELFEPMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDY 94
Query: 63 DALVLPGG-RAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYP 121
A+V+ GG + E + N K +E+ K+ +++ K V++IC P +L AG+L+G++ T YP
Sbjct: 95 VAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYP 154
Query: 122 GIK--DDMINAGVDWVDAEVVVDGNWVSSRVP 151
+ +++ AG + D VVVDGN ++++ P
Sbjct: 155 APEAIEELKKAGAIYEDRGVVVDGNVITAKSP 186
>dbj|BAB16486.1| (AP002861) hypothetical protein [Oryza sativa]
Length = 517
Score = 80.0 bits (194), Expect = 2e-14
Identities = 50/155 (32%), Positives = 84/155 (53%), Gaps = 6/155 (3%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASF--KRGVITGKHGYTVNVDLAFEEVNP 59
+VL+ A+ E++E + L+ G V VAS K V+T +H + + D+ EE
Sbjct: 336 QVLVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAK 395
Query: 60 DEFDALVLPGG-RAPERVRLNEKAVEIAKKMFSEGKPVASICHGP-QILISAGVLRGRRG 117
EFD +V+PGG +++ + V++ KK KP +IC P +L G+L+G++
Sbjct: 396 REFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKA 455
Query: 118 TSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPG 152
TS+P + + + D+ VVVDGN ++S+ PG
Sbjct: 456 TSFPPMAHLLTDQSA--CDSRVVVDGNLITSKAPG 488
>pir||T47619 hypothetical protein T14E10.170 - Arabidopsis thaliana
>gi|7258363|emb|CAB77580.1| (AL138656) putative protein
[Arabidopsis thaliana]
Length = 399
Score = 76.9 bits (186), Expect = 1e-13
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
Query: 3 VLILSADQFEDVELIYPYHRLKEEGHEV--LVASFKRG---------------VITGKHG 45
+L L D ED + P+ + G +V + + KRG + T K G
Sbjct: 213 LLFLIGDCVEDYSINVPFKAFQALGCKVDAVTPTKKRGEKCATIVHDLEDGRQLPTEKFG 272
Query: 46 YTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQI 105
+ V +A+++V+ D++D +V+PGGR+PE + +N KAVE+ +K +GK VA+I G +
Sbjct: 273 HNFYVTVAWDDVSVDDYDCIVVPGGRSPELLVMNPKAVELVRKFVEKGKFVAAIGMGNWL 332
Query: 106 LISAGVLRGRRGTSYPGIKDDMINAGVDWVDAE-VVVDGNWVSSRVPGDLYAWM 158
L + G L+ +R S G K + AG + V++E V D V++ DL A++
Sbjct: 333 LAATGALKKKRCASSYGTKVAVKVAGGEIVESERCVTDDKLVTAASTSDLPAFL 386
>gb|AAF57086.1| (AE003775) CG1349 gene product [Drosophila melanogaster]
Length = 187
Score = 74.5 bits (180), Expect = 7e-13
Identities = 49/154 (31%), Positives = 73/154 (46%), Gaps = 2/154 (1%)
Query: 4 LILSADQFEDVELIYPYHRLKEEGHEVLVASFKRG-VITGKHGYTVNVDLAFEEVNPDEF 62
L++ A E++E I L+ G +V VA G + + D + +V D+F
Sbjct: 6 LVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKF 65
Query: 63 DALVLPGGRAPERVRLNEKAV-EIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYP 121
D +VLPGG V ++ + S G +A+IC P +L GV G+ TSYP
Sbjct: 66 DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYP 125
Query: 122 GIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLY 155
+K ++N D VV DGN ++SR PG Y
Sbjct: 126 SMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAY 159
>gb|AAC79625.1| (AC005770) unknown protein [Arabidopsis thaliana]
Length = 398
Score = 73.7 bits (178), Expect = 1e-12
Identities = 53/174 (30%), Positives = 89/174 (50%), Gaps = 18/174 (10%)
Query: 3 VLILSADQFEDVELIYPYHRLKEEGHEV--LVASFKRGVITG---------------KHG 45
VL L D ED + P+ L+ G +V + + K+G + K G
Sbjct: 212 VLFLIGDYVEDYGINVPFRALQALGCKVDAVTPNKKKGEVCATAVYDLEDGRQIPAEKRG 271
Query: 46 YTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQI 105
+ V +++++ D++D +V+PGGR+PE + +NEKAV + K + K A+I G +
Sbjct: 272 HNFFVTASWDDICVDDYDCVVVPGGRSPELLVMNEKAVALVKSFAEKDKVFAAIGQGKLL 331
Query: 106 LISAGVLRGRRGTSYPGIKDDMINAGVDWV-DAEVVVDGNWVSSRVPGDLYAWM 158
L + GVL+G+R S G+K + AG + V + V DG V++ DL A++
Sbjct: 332 LAATGVLKGKRCASGKGMKVMVKVAGGEAVMEKGCVTDGKVVTAASATDLPAFL 385
>dbj|BAA97062.1| (AP000370) emb|CAA17570.1~gene_id:K15M2.13~similar to unknown
protein [Arabidopsis thaliana]
Length = 369
Score = 71.8 bits (173), Expect = 4e-12
Identities = 44/154 (28%), Positives = 79/154 (50%), Gaps = 5/154 (3%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGV-ITGKHGYTVNVDLAFEEVNPD 60
++L+ A++ E++E I L+ V++A+ + + G + ++ +EV
Sbjct: 190 QILVPIAEESEEIEAIALVDILRRAKANVVIAAVGNSLEVEGSRKAKLVAEVLLDEVAEK 249
Query: 61 EFDALVLPGG-RAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISA-GVLRGRRGT 118
FD +VLPGG +R EK V + +K KP IC P + G+L+G++ T
Sbjct: 250 SFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKAT 309
Query: 119 SYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPG 152
++P + D + + ++ VVVDGN ++SR PG
Sbjct: 310 THPVVSDKLSDKS--HIEHRVVVDGNVITSRAPG 341
Score = 67.5 bits (162), Expect = 9e-11
Identities = 43/133 (32%), Positives = 68/133 (50%), Gaps = 3/133 (2%)
Query: 23 LKEEGHEVLVASFKRGV-ITGKHGYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEK 81
L+ G +V VAS + V + HG + D ++ FD +VLPGG N K
Sbjct: 5 LRRGGADVTVASVETQVGVDACHGIKMVADTLLSDITDSVFDLIVLPGGLPGGETLKNCK 64
Query: 82 AVE-IAKKMFSEGKPVASICHGPQILISA-GVLRGRRGTSYPGIKDDMINAGVDWVDAEV 139
++E + KK S+G+ A+IC P + + G+L G++ T YP + + V++ V
Sbjct: 65 SLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVESRV 124
Query: 140 VVDGNWVSSRVPG 152
+DG V+SR PG
Sbjct: 125 QIDGRIVTSRGPG 137
>pir||D70177 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis
protein (thiJ) homolog - Lyme disease spirochete
>gi|2688544|gb|AAC66975.1| (AE001163)
4-methyl-5(b-hydroxyethyl)-thiazole monophosphate
biosynthesis protein (thiJ) [Borrelia burgdorferi]
Length = 184
Score = 71.0 bits (171), Expect = 8e-12
Identities = 47/169 (27%), Positives = 90/169 (52%), Gaps = 5/169 (2%)
Query: 1 MRVLILSADQFEDVELIYPYHRLKEEGHEV-LVASFKRGVITGKHGYTVNVDLAFEEVNP 59
M V I+ A+ FED+E I P L+ + ++++ V+ G + D
Sbjct: 1 MVVGIILANGFEDIEAIIPIDILRRGNVNIQIISTNDSNVVISSKGVSFLADDIISNCKE 60
Query: 60 DEFDALVLPGGRAPERVRLNEKAVE-IAKKMFSEGKPVASICHGPQILISA-GVLRGRRG 117
+ FD ++LPGG N K ++ I K M S+GK +A+IC P ++++A G+L +
Sbjct: 61 NCFDLIILPGGMPGATNLFNSKELDLILKDMNSKGKFIAAICASPVVVLAAKGLLGFNKF 120
Query: 118 TSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
T YPG++ ++++ ++VD VV N+++S+ G + + ++++K
Sbjct: 121 TCYPGLEKNVLDG--EFVDENVVRSNNFITSKGVGTSFEFAFTLLEMVK 167
>pir||T03871 hypothetical protein C49G7.11 - Caenorhabditis elegans
>gi|2291156|gb|AAB65292.1| (AF016418) C49G7.11 gene
product [Caenorhabditis elegans]
Length = 186
Score = 70.2 bits (169), Expect = 1e-11
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 1/164 (0%)
Query: 3 VLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGVITGKHGYTVNVDLAFEEVNPDEF 62
+++L + E++E+I L G +VL A + G + D+A ++V F
Sbjct: 8 LILLPPEDAEEIEVIVTGDVLVRGGLQVLYAGSSTEPVKCAKGARIVPDVALKDVKNKTF 67
Query: 63 DALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPG 122
D +++PGG ++ E+ K G + +IC GP +L++ G++ R T +
Sbjct: 68 DIIIIPGGPGCSKLAECPVIGELLKTQVKSGGLIGAICAGPTVLLAHGIV-AERVTCHYT 126
Query: 123 IKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLLK 166
+KD M G ++D VV+ ++S+ PG + + + V+ L+
Sbjct: 127 VKDKMTEGGYKYLDDNVVISDRVITSKGPGTAFEFALKIVETLE 170
>gb|AAF69547.1|AC008007_22 (AC008007) F12M16.18 [Arabidopsis thaliana]
Length = 438
Score = 69.9 bits (168), Expect = 2e-11
Identities = 43/154 (27%), Positives = 78/154 (49%), Gaps = 5/154 (3%)
Query: 2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGV-ITGKHGYTVNVDLAFEEVNPD 60
++L+ AD E++E + LK V+VA+ + + + D+ +E +
Sbjct: 259 QILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVKLVADVLLDEAEKN 318
Query: 61 EFDALVLPGGRA-PERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISA-GVLRGRRGT 118
+D +VLPGG E +EK V + KK KP +IC P ++ G+L+G++ T
Sbjct: 319 SYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKAT 378
Query: 119 SYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPG 152
++P + + + ++ V+VDGN ++SR PG
Sbjct: 379 AFPAMCSKLTDQ--SHIEHRVLVDGNLITSRGPG 410
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65229477
Number of Sequences: 2977
Number of extensions: 2722644
Number of successful extensions: 6511
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6449
Number of HSP's gapped (non-prelim): 36
length of query: 166
length of database: 189,106,746
effective HSP length: 51
effective length of query: 115
effective length of database: 158,583,909
effective search space: 18237149535
effective search space used: 18237149535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)