BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0312 (PAB0312) DE:Hypothetical protein
         (239 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75164 hypothetical protein PAB0312 - Pyrococcus abyssi (st...   476  e-133
pir||B71178 hypothetical protein PH1703 - Pyrococcus horikoshii ...   311  5e-84

>pir||A75164 hypothetical protein PAB0312 - Pyrococcus abyssi (strain Orsay)
           >gi|5457902|emb|CAB49392.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 239
           
 Score =  476 bits (1211), Expect = e-133
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MRKGGLLGLALFLVVLVIVGLIALTFIGLGLLGIFGFGHEKWFSLSNCHCECSTMEAGEV 60
           MRKGGLLGLALFLVVLVIVGLIALTFIGLGLLGIFGFGHEKWFSLSNCHCECSTMEAGEV
Sbjct: 1   MRKGGLLGLALFLVVLVIVGLIALTFIGLGLLGIFGFGHEKWFSLSNCHCECSTMEAGEV 60

Query: 61  REIGTYNGSKVHISNLVGRLVVEEGNSPLVIYSNLPINVSQVGDEVLITCNECNKYKDGK 120
           REIGTYNGSKVHISNLVGRLVVEEGNSPLVIYSNLPINVSQVGDEVLITCNECNKYKDGK
Sbjct: 61  REIGTYNGSKVHISNLVGRLVVEEGNSPLVIYSNLPINVSQVGDEVLITCNECNKYKDGK 120

Query: 121 IIVKGNLSELEIGDVLGKVEVEVPLRILKVGDIMGELEVHAPVGVFESGDIMGRVSVKAL 180
           IIVKGNLSELEIGDVLGKVEVEVPLRILKVGDIMGELEVHAPVGVFESGDIMGRVSVKAL
Sbjct: 121 IIVKGNLSELEIGDVLGKVEVEVPLRILKVGDIMGELEVHAPVGVFESGDIMGRVSVKAL 180

Query: 181 KLVDVEDVLGELKVMVPEGYGVNLKVDDIMGKIKNEAKGEKKVKVNLEDVMGRVEIING 239
           KLVDVEDVLGELKVMVPEGYGVNLKVDDIMGKIKNEAKGEKKVKVNLEDVMGRVEIING
Sbjct: 181 KLVDVEDVLGELKVMVPEGYGVNLKVDDIMGKIKNEAKGEKKVKVNLEDVMGRVEIING 239


>pir||B71178 hypothetical protein PH1703 - Pyrococcus horikoshii
           >gi|3258134|dbj|BAA30817.1| (AP000007) 235aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 235
           
 Score =  311 bits (788), Expect = 5e-84
 Identities = 150/239 (62%), Positives = 194/239 (80%), Gaps = 9/239 (3%)

Query: 1   MRKGGLLGLALFLVVLVIVGLIALTFIGLGLLGIFGFGHEKWFSLSNCHCECSTMEAGEV 60
           MRKGGLLG ALFL+VL IVGL+ LT +GLG L    F H     L NCHCE S +EAGEV
Sbjct: 4   MRKGGLLGFALFLLVLFIVGLVGLTLLGLGFLS---FHH-----LCNCHCESSLIEAGEV 55

Query: 61  REIGTYNGSKVHISNLVGRLVVEEGNS-PLVIYSNLPINVSQVGDEVLITCNECNKYKDG 119
           REIGTYN S V I+ + GRLVVE GNS P+ IYSNLPINVSQ GD+V+I C EC+KY++G
Sbjct: 56  REIGTYNASIVKIARIYGRLVVEGGNSSPVAIYSNLPINVSQKGDKVIILCKECSKYRNG 115

Query: 120 KIIVKGNLSELEIGDVLGKVEVEVPLRILKVGDIMGELEVHAPVGVFESGDIMGRVSVKA 179
           +II++GNLSELE+GDVLGK+E+  PL+ILK  DI+GE+E ++PV +FES DIMG+V +K 
Sbjct: 116 EIIIRGNLSELELGDVLGKIEIRTPLKILKTEDILGEVETYSPVEIFESDDIMGKVIIKV 175

Query: 180 LKLVDVEDVLGELKVMVPEGYGVNLKVDDIMGKIKNEAKGEKKVKVNLEDVMGRVEIIN 238
           +  V+V D+LGELKV+VP GYGVNL++D+++GK++N+AKGEKK+ + + DV+GRVE++N
Sbjct: 176 VGRVEVGDILGELKVIVPSGYGVNLEIDEVLGKVRNKAKGEKKIDIKISDVIGRVEVVN 234


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.144    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88137978
Number of Sequences: 2977
Number of extensions: 3918581
Number of successful extensions: 12659
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12638
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 189,106,746
effective HSP length: 54
effective length of query: 185
effective length of database: 156,788,448
effective search space: 29005862880
effective search space used: 29005862880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)