BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0313 (PAB0313) DE:Hypothetical protein
(305 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75164 hypothetical protein PAB0313 - Pyrococcus abyssi (st... 598 e-170
pir||A71178 hypothetical protein PH1702 - Pyrococcus horikoshii ... 473 e-133
sp|Q57680|Y227_METJA HYPOTHETICAL PROTEIN MJ0227 >gi|2128186|pir... 136 4e-31
pir||D69199 conserved hypothetical protein MTH743 - Methanobacte... 116 2e-25
emb|CAA74959.1| (Y14607) hypothetical protein [Methanosarcina ma... 99 8e-20
gi|11499422 conserved hypothetical protein [Archaeoglobus fulgid... 98 1e-19
gb|AAK40555.1| Conserved hypothetical protein [Sulfolobus solfat... 73 5e-12
>pir||B75164 hypothetical protein PAB0313 - Pyrococcus abyssi (strain Orsay)
>gi|5457903|emb|CAB49393.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 305
Score = 598 bits (1524), Expect = e-170
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MARKENIVRAFILGPLIEVTVPKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGI 60
MARKENIVRAFILGPLIEVTVPKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGI
Sbjct: 1 MARKENIVRAFILGPLIEVTVPKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGI 60
Query: 61 LLKRGKIKEDEVGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALGEGYDVHSCGRR 120
LLKRGKIKEDEVGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALGEGYDVHSCGRR
Sbjct: 61 LLKRGKIKEDEVGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALGEGYDVHSCGRR 120
Query: 121 AMELITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSC 180
AMELITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSC
Sbjct: 121 AMELITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSC 180
Query: 181 ARELIFCEWINGYSKVYEALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEE 240
ARELIFCEWINGYSKVYEALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEE
Sbjct: 181 ARELIFCEWINGYSKVYEALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEE 240
Query: 241 AELVRQKANLVLAGKMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLLKDYRLIGTRL 300
AELVRQKANLVLAGKMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLLKDYRLIGTRL
Sbjct: 241 AELVRQKANLVLAGKMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLLKDYRLIGTRL 300
Query: 301 VMSSI 305
VMSSI
Sbjct: 301 VMSSI 305
>pir||A71178 hypothetical protein PH1702 - Pyrococcus horikoshii
>gi|3258133|dbj|BAA30816.1| (AP000007) 303aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 303
Score = 473 bits (1205), Expect = e-133
Identities = 236/300 (78%), Positives = 264/300 (87%)
Query: 1 MARKENIVRAFILGPLIEVTVPKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGI 60
M RKE IV+AFILGPLIEVTVPKPGNVSR RDFEDLTIYHFLFANTSLI PYLKAVERGI
Sbjct: 1 MIRKEEIVQAFILGPLIEVTVPKPGNVSRIRDFEDLTIYHFLFANTSLIFPYLKAVERGI 60
Query: 61 LLKRGKIKEDEVGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALGEGYDVHSCGRR 120
LLK GKI E +VG+GKL+R++V WAKK+QD+NPNFGII LS+PLL+ALGEGY+V CG+R
Sbjct: 61 LLKEGKIIEGDVGLGKLIRDSVFWAKKHQDSNPNFGIIVLSIPLLVALGEGYEVKRCGKR 120
Query: 121 AMELITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSC 180
ELI+ STP DSVELYKAIRIANPKGVKRGVKYDVYDDSSF ELVRDNINLAKLAE+SC
Sbjct: 121 GNELISKSTPLDSVELYKAIRIANPKGVKRGVKYDVYDDSSFKELVRDNINLAKLAEISC 180
Query: 181 ARELIFCEWINGYSKVYEALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEE 240
RELIFCEWINGYSKVYEA +L++ L+ SLE+ V+ FL+MLAKYRDTLIERKAG+ E
Sbjct: 181 ERELIFCEWINGYSKVYEAFRILKKNLTEYSLEEGVIITFLWMLAKYRDTLIERKAGLYE 240
Query: 241 AELVRQKANLVLAGKMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLLKDYRLIGTRL 300
AELVR+KA VL G+ SLDEF+ FM E+GDLRNPGSIADILAVSLSLLLL+ Y L G +L
Sbjct: 241 AELVREKAREVLNGEASLDEFYAFMHERGDLRNPGSIADILAVSLSLLLLEGYSLRGKKL 300
>sp|Q57680|Y227_METJA HYPOTHETICAL PROTEIN MJ0227 >gi|2128186|pir||D64328 hypothetical
protein MJ0227 - Methanococcus jannaschii
>gi|1499004|gb|AAB98212.1| (U67478) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 308
Score = 136 bits (338), Expect = 4e-31
Identities = 92/292 (31%), Positives = 160/292 (54%), Gaps = 21/292 (7%)
Query: 6 NIVRAFILGPLIEVTVPKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGILLKRG 65
+I++A + +EV+ KPGNV R RD+ D+ +HF+ A + + +A +
Sbjct: 20 DIMKASQIACCLEVSSFKPGNVHRNRDYRDIKYHHFINAGIAFGNVVYEAAQ-------- 71
Query: 66 KIKEDEVGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALG--EGYDVHSCGRRAME 123
K+ +VG+ +++AV +KK+ N N GII L +P+ +A G E +D + +
Sbjct: 72 --KDRDVGL--YIKKAVIESKKWSPTNANLGIIMLHIPIAMAAGKLENFDENKLKENLKK 127
Query: 124 LITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSCARE 183
+ N+T D++ +Y AI IA K DV + + EL+ + L + ++S +
Sbjct: 128 IAENTTVEDALNVYDAINIAMAYVNKPKKGPDVTSEDAKKELIEKGLTLLDVYKISAEWD 187
Query: 184 LIFCEWINGYSKVYEALSLLER---ELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEE 240
I EW++ + +E +LL++ EL++++L +V + FL +LAKY DTLI RK G E
Sbjct: 188 NISKEWVDNFKISFEGYNLLKKYYDELNNINL--AVTKTFLNLLAKYPDTLIARKRGFET 245
Query: 241 AELVRQKANLVLAG--KMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLL 290
A V + A VL + + EF K++ ++G+ NPG+ AD++A SL + +L
Sbjct: 246 ALKVSKMAEDVLNNFKEEKVKEFDKYLSKEGNKLNPGTTADLIASSLMIFIL 297
>pir||D69199 conserved hypothetical protein MTH743 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621832|gb|AAB85247.1| (AE000853) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 305
Score = 116 bits (289), Expect = 2e-25
Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 15/304 (4%)
Query: 6 NIVRAFILGPLIEVT-VPKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGILLKR 64
++ R L ++EV+ PKPGNV R RDF+D+ FL + A ERG L R
Sbjct: 5 HVSRIAELASVLEVSGYPKPGNVHRTRDFDDMVYEDFLVSGIVTGDTMRLAAERGEKL-R 63
Query: 65 GKIKEDEVGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALG--EGYDVHSCGRRAM 122
+ +G+G+L+ AV +++ N N GII L PL A G + D+ +
Sbjct: 64 DTLDLSTLGLGELILRAVEDTRRWVSTNTNLGIIMLLTPLSAAAGMVDSGDLQGLREQVN 123
Query: 123 ELITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSCAR 182
LI +T D+V LY+AI A G+ DV D +S ++ +NI L ++S
Sbjct: 124 RLILQTTSGDAVNLYRAISTAEAGGMGEHDTLDVNDPASQQRIIDENITLFDTLKMSADW 183
Query: 183 ELIFCEWINGYSKVYE-ALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEEA 241
+LI E + + + + + + +VV+ FL +L+++ DTLI RK G + A
Sbjct: 184 DLIARELTSSMPVTFNVGFPVFKGTVEKHGMNRAVVQTFLTILSRFPDTLISRKYGEKIA 243
Query: 242 ELVRQKAN--------LVLAGKMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLLKDY 293
V ++A+ L AG +++F + + G NPG+ AD+ A S+ + LL Y
Sbjct: 244 VEVSEEASDIVDRGGVLTAAGLRRVEKFDRKLYRMG--WNPGTTADLTASSVMVGLLDYY 301
Query: 294 RLIG 297
+G
Sbjct: 302 SELG 305
>emb|CAA74959.1| (Y14607) hypothetical protein [Methanosarcina mazei]
Length = 328
Score = 98.7 bits (242), Expect = 8e-20
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 64/339 (18%)
Query: 7 IVRAFILGPLIEVTV-PKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGILLKRG 65
I R L L+EV+ PKPGNV R ++ D HF+ ++ ++ + A + G
Sbjct: 2 IRRCAQLAMLLEVSASPKPGNVDREHNYPDTCFEHFVASSVAVYPVFELAAK-----STG 56
Query: 66 KIKEDEVGIGKLMREAVSWAKKYQDA-NPNFGIIALSVPLLIALGE----GYDVHSCGR- 119
+I G+L+R AV + +Q N +FG L +PL +A GE + CG+
Sbjct: 57 RI-------GQLLRSAVYESSAWQQGGNTHFGAFLLLIPLAMAAGEISREQGEQPGCGKT 109
Query: 120 --------------RAMELITNSTPFDSVELYKAIRIANPKGVKRGVKYDVYDDSSFNEL 165
A + + D+VE Y+A A + V ++D+ D + ++L
Sbjct: 110 FFRIEAEEFENLASHAHAFVRETDCEDAVEFYRAFGHAGVR-VNSVEEFDLEDPEATSDL 168
Query: 166 VRDNINLAKLAELSCARELIFCEWINGYSKVYEALSLL----------EREL-------- 207
NI L L E++ +LI EW +G+ + E ++ E L
Sbjct: 169 RNQNITLYSLMEIAKGYDLIANEWTSGFGRCLEGAKIILDFMDARNCREEALAGGSVSIC 228
Query: 208 SSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEEAELVRQKANLVLAG-----------KM 256
S + ++VV FL +L+K+RDT I+ K E A+ V +A VL+G
Sbjct: 229 SGTGINEAVVYTFLKLLSKHRDTFIQTKFDAETADYVSSRAGEVLSGWEISGKKAGDFAS 288
Query: 257 SLDEFHKFMREKGDLR-NPGSIADILAVSLSLLLLKDYR 294
L +F E D R NPGS ADI+ +L + LL R
Sbjct: 289 ILPRIQEFDSELLDKRINPGSTADIIIAALFIALLGGLR 327
>gi|11499422 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483172|pir||B69479 conserved hypothetical protein
AF1835 - Archaeoglobus fulgidus
>gi|2648711|gb|AAB89416.1| (AE000976) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 277
Score = 98.3 bits (241), Expect = 1e-19
Identities = 84/289 (29%), Positives = 145/289 (50%), Gaps = 31/289 (10%)
Query: 13 LGPLIEVTV-PKPGNVSRARDFEDLTIYHFLFANTSLISPYLKAVERGILLKRGKIKEDE 71
L L+EV+ PK GNV R DF+DL HFL + +L+ E+ I+ +
Sbjct: 14 LSLLLEVSGNPKAGNVDREHDFDDLKFEHFLASAAGAFPAFLEVAEKRIIGE-------- 65
Query: 72 VGIGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALGEG--YDVHSCGRRAMELITNST 129
G+ + ++E++ W ++ N +FG L VPL+ + G D+ R + T
Sbjct: 66 -GVLRAVKESMRW---HRAENVHFGAFLLLVPLISSWDAGGMVDIAEAARNRL----RRT 117
Query: 130 PF-DSVELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSCARELIFCE 188
F DS+ + +A R++N + V+ G + ++ D + E+ + INL + +++ LI E
Sbjct: 118 DFRDSLSVLEAFRLSNARVVEAG-ELNLKDRKTEEEIAQKKINLYEWMKMAPEENLIARE 176
Query: 189 WINGYSKVYEALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEEAELVRQKA 248
++G+ E L LS + +VV ++ ++L+K+ D L+ K G E AE + + A
Sbjct: 177 LVDGFKISIEGAKFL---LSFGNSGKAVVELYYHLLSKFPDPLVIAKMGREYAEKITEWA 233
Query: 249 NLVLAGKMSLDEFHKFMREK--GDLRNPGSIADILAVSLSLLLLKDYRL 295
K +E K + EK D NPG+IAD+ A S+ L L + +R+
Sbjct: 234 E-----KARTEEERKELDEKLLKDGANPGTIADLTASSIFLALAEGWRI 277
>gb|AAK40555.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 298
Score = 72.6 bits (175), Expect = 5e-12
Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 28/284 (9%)
Query: 16 LIEVTVPKPGNVSRARDFEDLTIYHFLFANTSLISP--YLKAVERGILLKRGKIKEDEVG 73
+IE + KPGN SR++D + + + ++LIS Y + RG RG +
Sbjct: 24 IIESYIFKPGNASRSQDL--VNVKYIDIVKSALISSTYYKELCIRGF---RGISR----- 73
Query: 74 IGKLMREAVSWAKKYQDANPNFGIIALSVPLLIALGEGYDVHSCGRRAMELITNSTPFDS 133
I + E V+ + K+ FG L P + +V ++A +L+ + ++
Sbjct: 74 IYDTLVELVTRSNKFGFEYQLFGTYLLIAPFAYEAAKINNVFELRKKAAKLLRSLGALET 133
Query: 134 VELYKAIRIANPKGVKRGVKYDVYDDSSFNELVRDNINLAKLAELSCARELIFCEWINGY 193
A++ N K + + D + E+ +NI+ L E S +++ +N Y
Sbjct: 134 RWFLDALKELNLKYLGKLSSMD------YREI--ENIDFFTLMEFSSKYDIVALNMVNDY 185
Query: 194 SKVYEALSLLERELSSLSLEDSVVRVFLYMLAKYRDTLIERKAGVEEAELVRQKANLVLA 253
S + A +++ L L E V R FLY+L+ Y DTLI +K G A + A LV +
Sbjct: 186 SITFAAYKVIKEGLCGL--ERDVQRAFLYILSNYPDTLIYKKYGAHAALEASKVARLVFS 243
Query: 254 G----KMSLDEFHKFMREKGDLRNPGSIADILAVSLSLLLLKDY 293
G L+ +K++ NPGS AD++A +L++ L ++
Sbjct: 244 GDCPSSNELEWLNKYLINNN--FNPGSTADLIASALAIYYLDEW 285
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103547409
Number of Sequences: 2977
Number of extensions: 4045872
Number of successful extensions: 9952
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9935
Number of HSP's gapped (non-prelim): 7
length of query: 305
length of database: 189,106,746
effective HSP length: 57
effective length of query: 248
effective length of database: 154,992,987
effective search space: 38438260776
effective search space used: 38438260776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)