BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0315 (PAB0315) DE:Hypothetical protein
         (132 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75164 hypothetical protein PAB0315 - Pyrococcus abyssi (st...   261  2e-69
pir||F71177 hypothetical protein PH1700 - Pyrococcus horikoshii ...   238  3e-62
pir||A69219 conserved hypothetical protein MTH890 - Methanobacte...    81  6e-15
pir||F64502 hypothetical protein MJ1624 - Methanococcus jannasch...    69  2e-11

>pir||E75164 hypothetical protein PAB0315 - Pyrococcus abyssi (strain Orsay)
           >gi|5457906|emb|CAB49396.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 132
           
 Score =  261 bits (661), Expect = 2e-69
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MYAENYKIFEAIIDKLREFDGAIIVEGPRDEISLRKLGVRAEIIKLSRLPLAEVALIASQ 60
           MYAENYKIFEAIIDKLREFDGAIIVEGPRDEISLRKLGVRAEIIKLSRLPLAEVALIASQ
Sbjct: 1   MYAENYKIFEAIIDKLREFDGAIIVEGPRDEISLRKLGVRAEIIKLSRLPLAEVALIASQ 60

Query: 61  YKEVMILTDLDRKGEELAKKLAMYLEGYGCKVDTETRRSLKMIAKKDIKGIEDLYNLYLR 120
           YKEVMILTDLDRKGEELAKKLAMYLEGYGCKVDTETRRSLKMIAKKDIKGIEDLYNLYLR
Sbjct: 61  YKEVMILTDLDRKGEELAKKLAMYLEGYGCKVDTETRRSLKMIAKKDIKGIEDLYNLYLR 120

Query: 121 VSLRFWPPEEGI 132
           VSLRFWPPEEGI
Sbjct: 121 VSLRFWPPEEGI 132


>pir||F71177 hypothetical protein PH1700 - Pyrococcus horikoshii
           >gi|3258130|dbj|BAA30813.1| (AP000007) 132aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 132
           
 Score =  238 bits (600), Expect = 3e-62
 Identities = 120/132 (90%), Positives = 124/132 (93%)

Query: 1   MYAENYKIFEAIIDKLREFDGAIIVEGPRDEISLRKLGVRAEIIKLSRLPLAEVALIASQ 60
           MY ENYK FEAIIDKLREF+GAIIVEG RDE SLRKLGVRAEIIKLSRLPL EVALIAS+
Sbjct: 1   MYLENYKRFEAIIDKLREFEGAIIVEGARDEASLRKLGVRAEIIKLSRLPLPEVALIASE 60

Query: 61  YKEVMILTDLDRKGEELAKKLAMYLEGYGCKVDTETRRSLKMIAKKDIKGIEDLYNLYLR 120
           Y EVMILTDLDRKGEELA+KLA YLEGYGCKVDTETRR LKMIAKKDIKGIEDLY+LYLR
Sbjct: 61  YDEVMILTDLDRKGEELARKLAWYLEGYGCKVDTETRRELKMIAKKDIKGIEDLYSLYLR 120

Query: 121 VSLRFWPPEEGI 132
           VSLRFWPPEEGI
Sbjct: 121 VSLRFWPPEEGI 132


>pir||A69219 conserved hypothetical protein MTH890 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621985|gb|AAB85388.1| (AE000865) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 138
           
 Score = 80.8 bits (196), Expect = 6e-15
 Identities = 47/107 (43%), Positives = 66/107 (60%), Gaps = 2/107 (1%)

Query: 23  IIVEGPRDEISLRKLGVRAEIIKLS--RLPLAEVALIASQYKEVMILTDLDRKGEELAKK 80
           I++EG +DE +LR+LGV    IK+S  RL L+E+AL AS+   V+ILTD DRKG ELAK+
Sbjct: 26  ILIEGRKDEEALRELGVNGPFIKVSGTRLSLSEIALRASRTSRVIILTDFDRKGSELAKR 85

Query: 81  LAMYLEGYGCKVDTETRRSLKMIAKKDIKGIEDLYNLYLRVSLRFWP 127
           L   ++  G   D   RR L  + ++ IK I+ L +   R+ L   P
Sbjct: 86  LYRDMQSLGADPDLRIRRRLMGMTRRYIKDIQSLPSYIERLKLEVCP 132


>pir||F64502 hypothetical protein MJ1624 - Methanococcus jannaschii
           >gi|1592338|gb|AAB99642.1| (U67602) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 139
           
 Score = 69.5 bits (167), Expect = 2e-11
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 7   KIFEAIID-KLREFDGAIIVEGPRDEISLRKLGVRAEIIKLSRLPLAEVA--LIASQYKE 63
           K+ E I + K+   +  IIVEG RD  SL KLGV    I +++ P+  +A  L+  + KE
Sbjct: 20  KLLEVIEELKIEAEEKPIIVEGKRDVESLEKLGVEGTFIIIAKTPIYLIADELVRKRVKE 79

Query: 64  VMILTDLDRKGEELAKKLAMYLEGYGCKVDTETRRSLKMIAKKDIKGIEDLYN 116
           V++LTD DR+G  LAK +       G KV+T+ R  + +     I+ IE L++
Sbjct: 80  VILLTDFDRRGRMLAKAIIEEFRHRGIKVNTKIRHEIFIYTNSGIRDIESLFS 132


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42384693
Number of Sequences: 2977
Number of extensions: 1367706
Number of successful extensions: 4184
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4180
Number of HSP's gapped (non-prelim): 4
length of query: 132
length of database: 189,106,746
effective HSP length: 54
effective length of query: 78
effective length of database: 156,788,448
effective search space: 12229498944
effective search space used: 12229498944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)