BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0316 (PAB0316) DE:primase DnaG-like
(447 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75164 primase dnag-like PAB0316 - Pyrococcus abyssi (strai... 868 0.0
sp|O59362|YG99_PYRHO HYPOTHETICAL PROTEIN PH1699 >gi|7449971|pir... 820 0.0
gi|11499483 conserved hypothetical protein [Archaeoglobus fulgid... 443 e-123
sp|O26977|Y891_METTH HYPOTHETICAL PROTEIN MTH891 >gi|7449970|pir... 430 e-119
sp|Q58603|YC06_METJA HYPOTHETICAL PROTEIN MJ1206 >gi|2128723|pir... 424 e-118
emb|CAC11245.1| (AL445063) conserved hypothetical protein [Therm... 375 e-103
sp|P95980|YD42_SULSO HYPOTHETICAL PROTEIN C04042 >gi|7449972|pir... 348 6e-95
gb|AAK40440.1| Bacterial-like DNA primase (dnaG) [Sulfolobus sol... 348 6e-95
gb|AAG20005.1| (AE005081) Vng1784c [Halobacterium sp. NRC-1] 326 3e-88
sp|Q9YA42|YK96_AERPE HYPOTHETICAL PROTEIN APE2096 >gi|7449973|pi... 317 1e-85
>pir||F75164 primase dnag-like PAB0316 - Pyrococcus abyssi (strain Orsay)
>gi|5457907|emb|CAB49397.1| (AJ248284) primase DnaG-like
[Pyrococcus abyssi]
Length = 447
Score = 868 bits (2218), Expect = 0.0
Identities = 447/447 (100%), Positives = 447/447 (100%)
Query: 1 MKRKRAIIQHILSEKRRIEKIKEGDSMAGKDDFGTTKYIIYAEFEANGVVERPDVVGAIF 60
MKRKRAIIQHILSEKRRIEKIKEGDSMAGKDDFGTTKYIIYAEFEANGVVERPDVVGAIF
Sbjct: 1 MKRKRAIIQHILSEKRRIEKIKEGDSMAGKDDFGTTKYIIYAEFEANGVVERPDVVGAIF 60
Query: 61 GQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKSYGTILVPSSLDRVETAIIAAALET 120
GQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKSYGTILVPSSLDRVETAIIAAALET
Sbjct: 61 GQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKSYGTILVPSSLDRVETAIIAAALET 120
Query: 121 IDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILETLIEEEIPETQELVEEVRKAVREM 180
IDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILETLIEEEIPETQELVEEVRKAVREM
Sbjct: 121 IDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILETLIEEEIPETQELVEEVRKAVREM 180
Query: 181 ELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLRHGIKNAIAVEGTSIPETIIKLSKE 240
ELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLRHGIKNAIAVEGTSIPETIIKLSKE
Sbjct: 181 ELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLRHGIKNAIAVEGTSIPETIIKLSKE 240
Query: 241 RIVTAFTDGDRGGELILKELLQVADIDYVARAPEGKEVEELTKKEIIKALRSKVPAEEVY 300
RIVTAFTDGDRGGELILKELLQVADIDYVARAPEGKEVEELTKKEIIKALRSKVPAEEVY
Sbjct: 241 RIVTAFTDGDRGGELILKELLQVADIDYVARAPEGKEVEELTKKEIIKALRSKVPAEEVY 300
Query: 301 NELFNKGKSFYEIVKEREGKVKEEKPEKEVQQPKPQVKANEKIVKPLPVPKQDYRGFEEF 360
NELFNKGKSFYEIVKEREGKVKEEKPEKEVQQPKPQVKANEKIVKPLPVPKQDYRGFEEF
Sbjct: 301 NELFNKGKSFYEIVKEREGKVKEEKPEKEVQQPKPQVKANEKIVKPLPVPKQDYRGFEEF 360
Query: 361 VERVKNSQDPIALLLDENKNVIAEVHTRDLLSAIDENDGVYAVIFNGIITQRLIDVVSEK 420
VERVKNSQDPIALLLDENKNVIAEVHTRDLLSAIDENDGVYAVIFNGIITQRLIDVVSEK
Sbjct: 361 VERVKNSQDPIALLLDENKNVIAEVHTRDLLSAIDENDGVYAVIFNGIITQRLIDVVSEK 420
Query: 421 GVRYLIGAKKANVVRRPVTLKVITFAE 447
GVRYLIGAKKANVVRRPVTLKVITFAE
Sbjct: 421 GVRYLIGAKKANVVRRPVTLKVITFAE 447
>sp|O59362|YG99_PYRHO HYPOTHETICAL PROTEIN PH1699 >gi|7449971|pir||E71177 hypothetical
protein PH1699 - Pyrococcus horikoshii
>gi|3258129|dbj|BAA30812.1| (AP000007) 447aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 447
Score = 820 bits (2096), Expect = 0.0
Identities = 418/447 (93%), Positives = 435/447 (96%)
Query: 1 MKRKRAIIQHILSEKRRIEKIKEGDSMAGKDDFGTTKYIIYAEFEANGVVERPDVVGAIF 60
MKR++AII+ ++SEK+R EKIKEGD MAGKDDFGTTKYII+AEFEANGVVERPDVVGAIF
Sbjct: 1 MKREKAIIRQLISEKKRFEKIKEGDVMAGKDDFGTTKYIIHAEFEANGVVERPDVVGAIF 60
Query: 61 GQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKSYGTILVPSSLDRVETAIIAAALET 120
GQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKSYGTILVPSSLDRVETAIIAAALET
Sbjct: 61 GQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKSYGTILVPSSLDRVETAIIAAALET 120
Query: 121 IDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILETLIEEEIPETQELVEEVRKAVREM 180
IDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILETLIEEEIPETQELVEEVRKAVREM
Sbjct: 121 IDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILETLIEEEIPETQELVEEVRKAVREM 180
Query: 181 ELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLRHGIKNAIAVEGTSIPETIIKLSKE 240
ELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLRHGIKNAIAVEGTSIPETIIKLSKE
Sbjct: 181 ELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLRHGIKNAIAVEGTSIPETIIKLSKE 240
Query: 241 RIVTAFTDGDRGGELILKELLQVADIDYVARAPEGKEVEELTKKEIIKALRSKVPAEEVY 300
RIVTAFTDGDRGGELILKELLQVADIDYVARAPEGKEVEELTKKEIIKALRSKVPAEEVY
Sbjct: 241 RIVTAFTDGDRGGELILKELLQVADIDYVARAPEGKEVEELTKKEIIKALRSKVPAEEVY 300
Query: 301 NELFNKGKSFYEIVKEREGKVKEEKPEKEVQQPKPQVKANEKIVKPLPVPKQDYRGFEEF 360
NELFNKGKSFYEIV+EREGKVKEE EK QPK QVK NEKIVKPLPV KQDY+GFEEF
Sbjct: 301 NELFNKGKSFYEIVREREGKVKEEPQEKAETQPKQQVKVNEKIVKPLPVIKQDYKGFEEF 360
Query: 361 VERVKNSQDPIALLLDENKNVIAEVHTRDLLSAIDENDGVYAVIFNGIITQRLIDVVSEK 420
VERVKNS DP+ALLLDENKN+IAEVHTRDLL+AI+ENDGVYA++FNGIITQRLIDVVSEK
Sbjct: 361 VERVKNSPDPVALLLDENKNIIAEVHTRDLLNAIEENDGVYAIVFNGIITQRLIDVVSEK 420
Query: 421 GVRYLIGAKKANVVRRPVTLKVITFAE 447
GVRYLIGAKKANVVRRP+TLKVITFA+
Sbjct: 421 GVRYLIGAKKANVVRRPITLKVITFAD 447
>gi|11499483 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6686224|sp|O28380|YI99_ARCFU HYPOTHETICAL PROTEIN
AF1899 >gi|7449969|pir||B69487 conserved hypothetical
protein AF1899 - Archaeoglobus fulgidus
>gi|2648640|gb|AAB89350.1| (AE000971) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 399
Score = 443 bits (1126), Expect = e-123
Identities = 241/412 (58%), Positives = 305/412 (73%), Gaps = 33/412 (8%)
Query: 35 TTKYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAG 94
TTKY+I+AE EA GVVERPDVVGAIFGQTEGLLG DLDLRELQKTGRIGRI+V++ +K G
Sbjct: 17 TTKYLIHAEIEAEGVVERPDVVGAIFGQTEGLLGGDLDLRELQKTGRIGRIEVKIESKGG 76
Query: 95 KSYGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEI 154
+S+G I VPSSLD+VETAI+AAALETI+RVGPC AKI+V+KIEDVRASKRK I+ERA I
Sbjct: 77 RSFGEIKVPSSLDKVETAILAAALETIERVGPCSAKIKVLKIEDVRASKRKRIVERAMNI 136
Query: 155 LETLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNL 214
L EE E++ +VE VR+A+R E++EYG EKLPAGP + SD+IIVVEGRADVLNL
Sbjct: 137 LREHFEEPEIESERIVEIVRQAIRADEIVEYGEEKLPAGPAIDESDAIIVVEGRADVLNL 196
Query: 215 LRHGIKNAIAVEGTSIPETIIKLSKERIVTAFTDGDRGGELILKELLQVADIDYVARAPE 274
L+HGIKN IAVEGT+IP+TI++LSK++ VTAF DGDRGG+LILKELLQVA++DYVARAPE
Sbjct: 197 LKHGIKNVIAVEGTNIPKTIVELSKKKTVTAFLDGDRGGDLILKELLQVAEVDYVARAPE 256
Query: 275 GKEVEELTKKEIIKALRSKVPAEEVYNELFNKGKSFYEIVKEREGKVKEEKPEKEVQQPK 334
GKEVE+LT+KEI+K+LR+KVP E+++ V ++E K E+ EK + PK
Sbjct: 257 GKEVEDLTQKEILKSLRNKVPVEQLH-------------VLKKEAKEGRER-EKLAEMPK 302
Query: 335 PQVKANEKIVKPLPVPKQDYRGFEEFVERVKNSQDPIALLLDENKNVIAEVHTRDLLSAI 394
+ + E VK A +LD N NVI EV RDL+ +
Sbjct: 303 DSIS----------------DVLRKHTESVKGRL--TARVLDRNLNVIKEVPVRDLVKIL 344
Query: 395 DEND-GVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPVTLKVITF 445
N+ A++F+GIITQRLID+ ++K Y++G + +VV+ P +L+VITF
Sbjct: 345 KTNNMKGSAIVFDGIITQRLIDLAAKKEFDYIVGVRLGSVVKVPTSLRVITF 396
>sp|O26977|Y891_METTH HYPOTHETICAL PROTEIN MTH891 >gi|7449970|pir||B69219 conserved
hypothetical protein MTH891 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621986|gb|AAB85389.1| (AE000865) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 381
Score = 430 bits (1095), Expect = e-119
Identities = 225/417 (53%), Positives = 305/417 (72%), Gaps = 41/417 (9%)
Query: 29 GKDDFGTTKYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVE 88
GK++ TTKY+I+A+ ANG+VE+PDVVGAIFGQTEGLL +DLDLRE QKTGRIGRIKV
Sbjct: 2 GKEEISTTKYLIHAQINANGIVEKPDVVGAIFGQTEGLLSNDLDLREFQKTGRIGRIKVN 61
Query: 89 VHTKAGKSYGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYII 148
+ ++ GKS G I++PSSLDRVETAI+AA+LETI+RVGPCEA I+V K+EDVRA KRK ++
Sbjct: 62 ITSRGGKSKGEIIIPSSLDRVETAILAASLETINRVGPCEAYIQVTKVEDVRAVKRKRVV 121
Query: 149 ERAKEILETLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGR 208
ERAKEI +++EE PE+ +++EEV++A+R E+ EYG EKLPAGP+V SD+I+VVEGR
Sbjct: 122 ERAKEIYASMMEEVTPESLKMIEEVKEAMRVHEITEYGEEKLPAGPNVETSDAILVVEGR 181
Query: 209 ADVLNLLRHGIKNAIAVEGTSIPETIIKLSKERIVTAFTDGDRGGELILKELLQVADIDY 268
+DVLNLL++GIKNAIAVEG S+P+T+ L++++ VTAF DGDRGGELILKELLQV +IDY
Sbjct: 182 SDVLNLLKYGIKNAIAVEGVSVPKTVADLTRKKTVTAFVDGDRGGELILKELLQVGEIDY 241
Query: 269 VARAPEGKEVEELTKKEIIKALRSKVPAEEVYNELFNKGKSFYEIVKEREGKVKEEKPEK 328
V RAP+GKEVE+L K EI+ ALR+KVP E+ Y++L G KE+K
Sbjct: 242 VTRAPKGKEVEDLEKDEIMMALRNKVPVEQFYHDL---------------GMKKEKK--- 283
Query: 329 EVQQPKPQVKANEKIVKPLPVPKQDYRGFEEFVERVKNSQDPIALLLDENKNVIAEVHTR 388
K +K+V + K+ +E N++ +LD+ N++ EV
Sbjct: 284 ---------KTEDKMVLLRNILKE--------LEGTGNAE-----ILDDALNILREVKVE 321
Query: 389 DLLSAIDE-NDGVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPVTLKVIT 444
+L + N+ YAV+F+G+ITQRL+D+ EKG+RYL+ + ++V++P LK+IT
Sbjct: 322 NLYDELSRVNNHPYAVVFDGVITQRLVDLSFEKGLRYLVAVRSGDIVKKPHNLKLIT 378
>sp|Q58603|YC06_METJA HYPOTHETICAL PROTEIN MJ1206 >gi|2128723|pir||E64450 hypothetical
protein MJ1206 - Methanococcus jannaschii
>gi|1591836|gb|AAB99210.1| (U67562) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 424
Score = 424 bits (1079), Expect = e-118
Identities = 233/426 (54%), Positives = 303/426 (70%), Gaps = 19/426 (4%)
Query: 32 DFGTTKYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHT 91
D GTTKYIIYAE A+G VE+ DV+GAIFGQTEGLLGD+LDLRELQKTGR+GRI VE+
Sbjct: 5 DLGTTKYIIYAELIADGYVEKHDVIGAIFGQTEGLLGDELDLRELQKTGRVGRIDVELTN 64
Query: 92 KAGKSYGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERA 151
GKS I VPSSLDR+ET+I+AA LETIDRVGPC A ++V+ IED+R KR+YI+ERA
Sbjct: 65 INGKSIAKITVPSSLDRIETSILAATLETIDRVGPCVATVKVIDIEDIRKKKREYIVERA 124
Query: 152 KEILETLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADV 211
KEIL+ L+ + ++EEV+++VR E+IEYGPE+LPAGP V SD IIVVEGRADV
Sbjct: 125 KEILKQLMSNI--DVNTIIEEVKESVRMGEIIEYGPERLPAGPAVDSSDDIIVVEGRADV 182
Query: 212 LNLLRHGIKNAIAVEGTSIPETIIKLSKERIVTAFTDGDRGGELILKELLQVADIDYVAR 271
LNLLR GIKN IAVEGTS+P+TII+LSK++IVT FTDGDRGGELILKELLQV D+D+VAR
Sbjct: 183 LNLLRCGIKNVIAVEGTSVPKTIIELSKKKIVTVFTDGDRGGELILKELLQVCDVDFVAR 242
Query: 272 APEGKEVEELTKKEIIKALRSKVPAEEVYNELFNKGKSFYEIVKEREGK------VKEEK 325
AP GKEVEEL+KKEI+K LRSK+PAE + ++ + E V + E + + E K
Sbjct: 243 APPGKEVEELSKKEIMKCLRSKIPAEHILAQILKDKQKIDEKVCKDEIRNMGIQTIPEIK 302
Query: 326 PEKEVQQ----PKPQVKANEKIVKPLPVPKQDYRGFEEFVERVKNSQDPIALLLDENKNV 381
PE + V+ N + LP PK Y + +F E++ +D L+++ +K
Sbjct: 303 PEISITSNDDVEVSSVECNPSNNEELP-PK--YNKYRKFYEKLIELEDSKVLIINGDKEE 359
Query: 382 IAEVHTRDLLSAIDENDGVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPVTLK 441
I + +L++ D + A+I NG +TQ+LID++ EK LI K A ++++PV L
Sbjct: 360 IVSI--EELINNTDNYKSIDAIIINGTVTQKLIDILYEK--TNLIFCKDAKIIKKPVNLT 415
Query: 442 VITFAE 447
+ITF +
Sbjct: 416 LITFGD 421
>emb|CAC11245.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 448
Score = 375 bits (953), Expect = e-103
Identities = 205/427 (48%), Positives = 283/427 (66%), Gaps = 13/427 (3%)
Query: 32 DFGTTKYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHT 91
D TKY+I A+ +GVVE+PDVVGAIFGQTEGLLGDDLDLR+LQK+G+IGRI+VE+ +
Sbjct: 18 DPNLTKYMIKAKIYTDGVVEKPDVVGAIFGQTEGLLGDDLDLRDLQKSGKIGRIEVEIDS 77
Query: 92 KAGKSYGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERA 151
K G++ G L+PS LD+VETAI+AAALETIDR+GPC+AK+ + +EDVR KR+ IIERA
Sbjct: 78 KKGRTEGYALIPSGLDQVETAILAAALETIDRIGPCKAKVEIANVEDVRVQKRQKIIERA 137
Query: 152 KEILETLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADV 211
K+I + + + ++ LV+ VR+ V + E+I YG EKLPAGP + SDSIIVVEGR DV
Sbjct: 138 KKIYQDMNSKGDDLSESLVKSVREEVEKSEIISYGEEKLPAGPAINDSDSIIVVEGRNDV 197
Query: 212 LNLLRHGIKNAIAVEGTSIPETIIKLSKERIVTAFTDGDRGGELILKELLQVADIDYVAR 271
LNLL++GIKN IAV+GT+IPET+ KLSKER VT F DGDRGG+LILKE+LQVA+ D+VAR
Sbjct: 198 LNLLKYGIKNTIAVQGTNIPETVKKLSKERTVTVFLDGDRGGDLILKEMLQVAEADFVAR 257
Query: 272 APEGKEVEELTKKEIIKALRSKVPAEEVYN---------ELFNKGKSFYEIVKEREGKVK 322
AP G EVEELT K+I+KALR K P ++ + E + + + K
Sbjct: 258 APPGTEVEELTYKQIVKALRYKTPIDQYLSMHGMNDELKEYSQRNNLVFGSQPNNNHEAK 317
Query: 323 EEKPEKEVQQPKPQVKANEKIVKPLPVPKQ---DYRGFEEFVERVKN-SQDPIALLLDEN 378
E E+ +QP + E+ + + V K+ D E +R++ +Q + + D N
Sbjct: 318 AEVIEEPPEQPPKNEEIREEQSQQVTVQKEGFLDLLNPHEVSKRIEALAQLKMTEVYDSN 377
Query: 379 KNVIAEVHTRDLLSAIDENDGVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPV 438
I + + I ++ ++ GII+QRLIDV G++ + G K ++ ++PV
Sbjct: 378 GERIFSFPVSEAVERISQDPRGNTIVTGGIISQRLIDVSYNAGIKNIYGLKLGHITKKPV 437
Query: 439 TLKVITF 445
+ VI +
Sbjct: 438 DINVIAW 444
>sp|P95980|YD42_SULSO HYPOTHETICAL PROTEIN C04042 >gi|7449972|pir||S75408 hypothetical
protein c04042 - Sulfolobus solfataricus
>gi|1707814|emb|CAA69522.1| (Y08257) orf c04042
[Sulfolobus solfataricus]
Length = 406
Score = 348 bits (884), Expect = 6e-95
Identities = 193/418 (46%), Positives = 277/418 (66%), Gaps = 28/418 (6%)
Query: 37 KYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKS 96
KY I FE G+VE+ DV+GAIFGQTE L GD+ DLRELQ GR+GRI VEV TK GKS
Sbjct: 6 KYDIRLRFEVEGIVEKTDVIGAIFGQTENLFGDEFDLRELQDKGRLGRIIVEVKTKGGKS 65
Query: 97 YGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILE 156
G I++PS+LDR+ETA+IAA +E++D+VGP +K +++IED+RA K K IIERAK IL
Sbjct: 66 EGEIIIPSNLDRIETALIAAMVESVDKVGPYNSKFELIEIEDIRAEKLKKIIERAKGILS 125
Query: 157 TLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLR 216
+ +E+ + +E++ E+ AV+ E+ EYGPE+LPAGP V ++I+VEGRADV+NLLR
Sbjct: 126 SWSKEKSLDIKEVINEISSAVKVGEITEYGPERLPAGPDVDKDPNLIIVEGRADVINLLR 185
Query: 217 HGIKNAIAVEGTS--IPETIIKLSK-ERIVTAFTDGDRGGELILKELL-QVADIDYVARA 272
+G KN IAVEG + IPET+I LSK ++ V AF DGD GG+LILKELL ID+VARA
Sbjct: 186 YGYKNVIAVEGATSRIPETLINLSKMKKTVIAFLDGDHGGDLILKELLSNNVKIDFVARA 245
Query: 273 PEGKEVEELTKKEIIKALRSKVPAEEVYNELFNKGKSFYE-IVKEREGKVKEEKPEKEVQ 331
P G+EVEELT KEI KAL + +P + ++ ++ + ++ + E ++ E ++ VQ
Sbjct: 246 PIGREVEELTGKEIAKALSNMMPLTQYLKKVQEAEQAIAKNVIAKEEKPIQSETTQQVVQ 305
Query: 332 QPKPQVKANEKIVKPLPVPKQDYRGFEEFVERVKNSQDPIALLLDENKNVIAEVHTRDLL 391
PQ E +K LP + +L D N N+I +V RD++
Sbjct: 306 ITLPQNILEE--IKKLPGTLE-------------------GVLYDNNWNLIEKVQVRDII 344
Query: 392 SAID--ENDGVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPVTLKVITFAE 447
++ E++ V +IF+G+ITQRL+D+ S+K ++ +IGA+ + +RP + ++TF +
Sbjct: 345 PKLEAYEDNKVAYIIFDGVITQRLLDLASQKNIKMIIGARIGGINKRPQNVDILTFTD 402
>gb|AAK40440.1| Bacterial-like DNA primase (dnaG) [Sulfolobus solfataricus]
Length = 406
Score = 348 bits (884), Expect = 6e-95
Identities = 193/418 (46%), Positives = 277/418 (66%), Gaps = 28/418 (6%)
Query: 37 KYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKS 96
KY I FE G+VE+ DV+GAIFGQTE L GD+ DLRELQ GR+GRI VEV TK GKS
Sbjct: 6 KYDIRLRFEVEGIVEKTDVIGAIFGQTENLFGDEFDLRELQDKGRLGRIIVEVKTKGGKS 65
Query: 97 YGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILE 156
G I++PS+LDR+ETA+IAA +E++D+VGP +K +++IED+RA K K IIERAK IL
Sbjct: 66 EGEIIIPSNLDRIETALIAAMVESVDKVGPYNSKFELIEIEDIRAEKLKKIIERAKGILS 125
Query: 157 TLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNLLR 216
+ +E+ + +E++ E+ AV+ E+ EYGPE+LPAGP V ++I+VEGRADV+NLLR
Sbjct: 126 SWSKEKSLDIKEVINEISSAVKVGEITEYGPERLPAGPDVDKDPNLIIVEGRADVINLLR 185
Query: 217 HGIKNAIAVEGTS--IPETIIKLSK-ERIVTAFTDGDRGGELILKELL-QVADIDYVARA 272
+G KN IAVEG + IPET+I LSK ++ V AF DGD GG+LILKELL ID+VARA
Sbjct: 186 YGYKNVIAVEGATSRIPETLINLSKMKKTVIAFLDGDHGGDLILKELLSNNVKIDFVARA 245
Query: 273 PEGKEVEELTKKEIIKALRSKVPAEEVYNELFNKGKSFYE-IVKEREGKVKEEKPEKEVQ 331
P G+EVEELT KEI KAL + +P + ++ ++ + ++ + E ++ E ++ VQ
Sbjct: 246 PIGREVEELTGKEIAKALSNMMPLTQYLKKVQEAEQAIAKNVIAKEEKPIQSETTQQVVQ 305
Query: 332 QPKPQVKANEKIVKPLPVPKQDYRGFEEFVERVKNSQDPIALLLDENKNVIAEVHTRDLL 391
PQ E +K LP + +L D N N+I +V RD++
Sbjct: 306 ITLPQNILEE--IKKLPGTLE-------------------GVLYDNNWNLIEKVQVRDII 344
Query: 392 SAID--ENDGVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPVTLKVITFAE 447
++ E++ V +IF+G+ITQRL+D+ S+K ++ +IGA+ + +RP + ++TF +
Sbjct: 345 PKLEAYEDNKVAYIIFDGVITQRLLDLASQKNIKMIIGARIGGINKRPQNVDILTFTD 402
>gb|AAG20005.1| (AE005081) Vng1784c [Halobacterium sp. NRC-1]
Length = 450
Score = 326 bits (827), Expect = 3e-88
Identities = 178/411 (43%), Positives = 264/411 (63%), Gaps = 15/411 (3%)
Query: 35 TTKYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAG 94
T KY+I+A+F +GVVER DVVGA FGQTEGLLGDDL + +LQ + ++GRI V V ++ G
Sbjct: 48 TAKYLIHADFVVDGVVERSDVVGAAFGQTEGLLGDDLAIPDLQDSAKLGRIDVSVDSEGG 107
Query: 95 KSYGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEI 154
+S+G I + SSLDRVETA +AAALE ++R+GPC A + V +IEDVRA+KR+ +++RAKE+
Sbjct: 108 QSFGDITIASSLDRVETATLAAALEAVERIGPCRADVEVDRIEDVRAAKRREVVDRAKEL 167
Query: 155 LETLIEEEIPETQELVEEVRKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADVLNL 214
L T +E ++++EVR++VR ++ +Y + PAGP+V SD++++VEGRADV+ L
Sbjct: 168 LATAFDEGAINADDILDEVRESVRVDDITDY--DGYPAGPNVDSSDAVVIVEGRADVVTL 225
Query: 215 LRHGIKNAIAVEGTSIPETIIKLSKERIVTAFTDGDRGGELILKELLQVADIDYVARAPE 274
L++GIKNA+AVEGT+IP+ I LS+E+ TAF DGDRGG++IL+EL QV +D+VARAP
Sbjct: 226 LKYGIKNAVAVEGTNIPDAIAALSREKTATAFLDGDRGGDMILRELGQVGSLDFVARAPM 285
Query: 275 GKEVEELTKKEIIKALRSKVPAEEVYNELFNKGKSFYEIVKEREGKVKEEKPEKEVQQPK 334
G+ VE+L+++ + ALR+K PA + ++ E P+ P
Sbjct: 286 GECVEDLSRRTVDSALRNKTPASAAAPIATTQSETAATDGSATPAPTPEPAPD---TAPS 342
Query: 335 PQVKANEKIVKPLPVPKQDYRGFEEFVERVKNSQDPIALLLDENKNVIAEVHTRDLLSAI 394
P ++ P + R + A LLD+ I EV +++ A+
Sbjct: 343 PDSDGDDTEAAAPPTLAEHARAV---------ADTETARLLDDALARIREVPAAEVVDAV 393
Query: 395 DENDGVYA-VIFNGIITQRLIDVVSEKGVRYLIGAKKANVVRRPVTLKVIT 444
+ D V A V+ + ITQRL+DV +++GV LIGA V++P+ +V T
Sbjct: 394 ADADSVPAVVVVDATITQRLLDVAAQRGVASLIGADTDEFVKQPLATRVRT 444
>sp|Q9YA42|YK96_AERPE HYPOTHETICAL PROTEIN APE2096 >gi|7449973|pir||C72515 hypothetical
protein APE2096 - Aeropyrum pernix (strain K1)
>gi|5105795|dbj|BAA81107.1| (AP000063) 426aa long
hypothetical protein [Aeropyrum pernix]
Length = 426
Score = 317 bits (804), Expect = 1e-85
Identities = 193/426 (45%), Positives = 270/426 (63%), Gaps = 25/426 (5%)
Query: 37 KYIIYAEFEANGVVERPDVVGAIFGQTEGLLGDDLDLRELQKTGRIGRIKVEVHTKAGKS 96
KY+I A E +G VE+ DV+GAIFGQTE LLG D L ELQ ++GRI VE+ + K+
Sbjct: 9 KYLIRARLEVDGRVEKHDVIGAIFGQTESLLGSDFSLEELQNKDKLGRIHVELKYQGTKT 68
Query: 97 YGTILVPSSLDRVETAIIAAALETIDRVGPCEAKIRVVKIEDVRASKRKYIIERAKEILE 156
G+I VPS+L RVETAIIAA LETID++GP AKI + +I D+R + + I +RA+E+L
Sbjct: 69 IGSISVPSNLSRVETAIIAAMLETIDKIGPYPAKITIEEIRDLRLERLEKIKQRARELLR 128
Query: 157 TLIEEEIPETQELVEEV----RKAVREMELIEYGPEKLPAGPHVPFSDSIIVVEGRADVL 212
L++E+ P+ +E++ EV + + +L+EYGPE+LPAGP V +D+IIVVEGR+DV
Sbjct: 129 -LMKEKEPDIREIIREVLQEEQAKAQVAKLVEYGPERLPAGPGVEKADTIIVVEGRSDVN 187
Query: 213 NLLRHGIKNAIAVEGT--SIPETIIKLSKERIVTAFTDGDRGGELILKELLQVADIDYVA 270
LLR+G N IA+ G +PETI +L++++ V F DGDRGGELILK +L +DYVA
Sbjct: 188 TLLRYGYTNVIALGGAREKVPETIKRLAEQKKVILFVDGDRGGELILKNVLPQMKVDYVA 247
Query: 271 RAPEGKEVEELTKKEIIKALRSKVPAEEVYNELFNKG--KSFYEIVKEREGKVKEEKPEK 328
RAPEG+EVE LT +EI +AL PAE V EL + K E VK E E KP
Sbjct: 248 RAPEGREVESLTGREIAQALSQMKPAEIVARELGIEAAEKPAEEAVKREEEAAAEAKP-- 305
Query: 329 EVQQPKPQVKANEKIVKPLPVPKQDYRGF---EEFVERVKNSQDPI-ALLLDENKNVIAE 384
P P V+ EK KP P K F + +E K + + A++ D+ +
Sbjct: 306 ----PAPAVQ--EKAAKP-PEEKPPTVKFTIPKAVLEAAKELRGTLEAIVYDKEWRELDR 358
Query: 385 VHTRDLLSAIDEND--GVYAVIFNGIITQRLIDVVSEKGVRYLIGAKKAN-VVRRPVTLK 441
+ R+L I +++ +YAV+F+GIITQRL+D+ SEKGV +IG + N + +P +K
Sbjct: 359 LKVRELYDYISKSEPGRIYAVVFDGIITQRLLDIASEKGVGIIIGNRIGNKITHKPTNVK 418
Query: 442 VITFAE 447
+TF++
Sbjct: 419 FLTFSD 424
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.137 0.366
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159161772
Number of Sequences: 2977
Number of extensions: 7100928
Number of successful extensions: 26066
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26033
Number of HSP's gapped (non-prelim): 11
length of query: 447
length of database: 189,106,746
effective HSP length: 62
effective length of query: 385
effective length of database: 152,000,552
effective search space: 58520212520
effective search space used: 58520212520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 166 (69.1 bits)