BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0318 (pmm-like) DE:phosphomannomutase related protein
         (267 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75164 phosphomannomutase related protein PAB0318 - Pyrococ...   541  e-153
pir||B71177 hypothetical protein PH1696 - Pyrococcus horikoshii ...   406  e-112
gi|11498070 phosphomannomutase (pmm) [Archaeoglobus fulgidus] >g...    75  1e-12

>pir||H75164 phosphomannomutase related protein PAB0318 - Pyrococcus abyssi
           (strain Orsay) >gi|5457909|emb|CAB49399.1| (AJ248284)
           phosphomannomutase related protein [Pyrococcus abyssi]
           Length = 267
           
 Score =  541 bits (1378), Expect = e-153
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MRSTAGLALTLRFGPIQGLGGKALYFQIEGGVMMRLYSSEKFNPEELALLGRGIGTVAQG 60
           MRSTAGLALTLRFGPIQGLGGKALYFQIEGGVMMRLYSSEKFNPEELALLGRGIGTVAQG
Sbjct: 1   MRSTAGLALTLRFGPIQGLGGKALYFQIEGGVMMRLYSSEKFNPEELALLGRGIGTVAQG 60

Query: 61  TIVVGRDGRAISRYGKRALVVGIVSTGSTIMDVRLIPLIALRDFAKKKNYPFAYVYYYNG 120
           TIVVGRDGRAISRYGKRALVVGIVSTGSTIMDVRLIPLIALRDFAKKKNYPFAYVYYYNG
Sbjct: 61  TIVVGRDGRAISRYGKRALVVGIVSTGSTIMDVRLIPLIALRDFAKKKNYPFAYVYYYNG 120

Query: 121 VNVEINGIDAEEVKTIVEKRTFVEASPNDIGATVYYPNALDDIVHEILRHYDFNLGTKVL 180
           VNVEINGIDAEEVKTIVEKRTFVEASPNDIGATVYYPNALDDIVHEILRHYDFNLGTKVL
Sbjct: 121 VNVEINGIDAEEVKTIVEKRTFVEASPNDIGATVYYPNALDDIVHEILRHYDFNLGTKVL 180

Query: 181 VDCMNTPAVLLFPRMSEKFGMEVDMINDMMTSYLPPKPKEIFLQKLQKGDYDFGLRFRPD 240
           VDCMNTPAVLLFPRMSEKFGMEVDMINDMMTSYLPPKPKEIFLQKLQKGDYDFGLRFRPD
Sbjct: 181 VDCMNTPAVLLFPRMSEKFGMEVDMINDMMTSYLPPKPKEIFLQKLQKGDYDFGLRFRPD 240

Query: 241 GIVEFHRDEDVKEFDSLWNLMDFLSSL 267
           GIVEFHRDEDVKEFDSLWNLMDFLSSL
Sbjct: 241 GIVEFHRDEDVKEFDSLWNLMDFLSSL 267


>pir||B71177 hypothetical protein PH1696 - Pyrococcus horikoshii
           >gi|3258126|dbj|BAA30809.1| (AP000007) 240aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 240
           
 Score =  406 bits (1031), Expect = e-112
 Identities = 190/234 (81%), Positives = 218/234 (92%)

Query: 34  MRLYSSEKFNPEELALLGRGIGTVAQGTIVVGRDGRAISRYGKRALVVGIVSTGSTIMDV 93
           M LYSSEKFNPEELALLGR IGTV+QGTIV+GRDGRAISRYGKRAL VGIVSTGSTIMDV
Sbjct: 4   MELYSSEKFNPEELALLGRAIGTVSQGTIVIGRDGRAISRYGKRALAVGIVSTGSTIMDV 63

Query: 94  RLIPLIALRDFAKKKNYPFAYVYYYNGVNVEINGIDAEEVKTIVEKRTFVEASPNDIGAT 153
           RLIPL+AL+DF KKK+YPF YVYY+ GV VEI+GIDAEEV+TI+EKRTFVEA+P+DIGAT
Sbjct: 64  RLIPLVALKDFGKKKDYPFVYVYYHGGVKVEISGIDAEEVETILEKRTFVEAAPSDIGAT 123

Query: 154 VYYPNALDDIVHEILRHYDFNLGTKVLVDCMNTPAVLLFPRMSEKFGMEVDMINDMMTSY 213
           VYYPNAL+DI+H++++HY+F L  K LVDCMNTPAVLLFPR+SEKF + VD+INDMMTSY
Sbjct: 124 VYYPNALEDILHDVIKHYNFKLDMKALVDCMNTPAVLLFPRISEKFSINVDLINDMMTSY 183

Query: 214 LPPKPKEIFLQKLQKGDYDFGLRFRPDGIVEFHRDEDVKEFDSLWNLMDFLSSL 267
           LPPKPKE+FLQKL KG YDFGLRFRPDGI+EF++D DVK+FDSLW+LMD+LSSL
Sbjct: 184 LPPKPKEVFLQKLAKGSYDFGLRFRPDGIIEFYKDGDVKKFDSLWSLMDYLSSL 237


>gi|11498070 phosphomannomutase (pmm) [Archaeoglobus fulgidus]
           >gi|7450819|pir||B69307 phosphomannomutase (pmm) homolog
           - Archaeoglobus fulgidus >gi|2650171|gb|AAB90779.1|
           (AE001073) phosphomannomutase (pmm) [Archaeoglobus
           fulgidus]
           Length = 446
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 16/204 (7%)

Query: 50  LGRGIGTVAQGTIVVGRDGRAISRYGKRALVVGIVSTGSTIMDVRLIPLIALRDFAKKKN 109
           LGR IGT+ QG I +  D R  S   K A+  GI+STGS ++D+ + P  AL+ + K+ +
Sbjct: 31  LGRTIGTLRQGKIAIACDTRISSSMLKSAVSAGIMSTGSDVVDIGIAPTPALQYYVKETD 90

Query: 110 YPFAYVY-------YYNGVN-VEINGID-----AEEVKTIVEKRTFVEASPNDIGATVYY 156
                +         YNG+  V+ NG++      EE + +   + F  A  +++G     
Sbjct: 91  CSAGVIVTASHNPREYNGIKFVQENGVEFYREMDEESERVYMSKKFRIAEWSEVGQLYQD 150

Query: 157 PNALDDIVHEILRHYDFNLGTKVLVDCMNTPAVLLFPRMSEKFGMEVDMINDMMTSYLP- 215
            + L   +  I+   + +   +V VDC N       P + ++ G +V  IN       P 
Sbjct: 151 NSGLRKYIEAIINSVELDKSYRVAVDCGNGAGCFTTPEILKELGCDVYGINCNPDGRFPA 210

Query: 216 --PKPKEIFLQKLQKGDYDFGLRF 237
             P+P E  L  L+K   DF   F
Sbjct: 211 RNPEPVEASLDLLKKAVVDFRADF 234


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.143    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100855922
Number of Sequences: 2977
Number of extensions: 4315101
Number of successful extensions: 9567
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9564
Number of HSP's gapped (non-prelim): 3
length of query: 267
length of database: 189,106,746
effective HSP length: 53
effective length of query: 214
effective length of database: 157,386,935
effective search space: 33680804090
effective search space used: 33680804090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)