BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0320 (srp54) DE:signal recognition particle, subunit SRP54
(srp54)
(443 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75165 signal recognition particle, chain srp54 (srp54) PAB... 867 0.0
pir||H71176 probable signal recognition particle protein - Pyroc... 835 0.0
sp|O27376|SR54_METTH PROBABLE SIGNAL RECOGNITION 54 KD PROTEIN (... 513 e-144
sp|Q57565|SR54_METJA PROBABLE SIGNAL RECOGNITION 54 KD PROTEIN (... 499 e-140
gi|11498230 signal recognition particle, subunit SRP54 (srp54) [... 435 e-121
emb|CAA69991.1| (Y08735) fifty-four homologue of SRP54 [Acidianu... 430 e-119
gb|AAK41245.1| Signal recognition particle protein subunit SRP54... 425 e-118
emb|CAA73234.1| (Y12702) fifty-four homologue of SRP54 [Sulfolob... 420 e-116
pir||C72556 probable signal recognition protein APE1735 - Aeropy... 418 e-116
emb|CAC11655.1| (AL445064) probable signal recognition particle ... 393 e-108
pir||S51597 signal recognition particle 54K protein - tomato (cv... 369 e-101
gb|AAG20536.1| (AE005125) signal recognition particle; Srp54 [Ha... 364 e-100
gi|4507215 signal recognition particle 54kD [Homo sapiens] >gi|1... 363 2e-99
gi|6755660 signal recognition particle 54 kDa [Mus musculus] >gi... 362 4e-99
sp|P49971|SR51_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1... 359 4e-98
pir||S05198 signal recognition particle 54K protein - mouse 359 4e-98
gb|AAD46831.1|AF160891_1 (AF160891) BcDNA.GM09489 [Drosophila me... 358 5e-98
prf||1512311A SRP protein 54kD [Mus musculus] 357 1e-97
sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2... 356 2e-97
sp|P49968|SR51_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1... 356 3e-97
sp|P49969|SR52_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2... 355 5e-97
sp|P49970|SR53_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 3... 351 1e-95
sp|P49967|SR53_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 3... 350 2e-95
sp|P21565|SR54_SCHPO SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN H... 349 4e-95
sp|P49966|SR52_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2... 349 5e-95
prf||1604366A signal recognition particle 54kD protein [Schizosa... 347 2e-94
pir||T21140 hypothetical protein F21D5.7 - Caenorhabditis elegan... 342 6e-93
sp|Q99150|SR54_YARLI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN H... 340 2e-92
sp|P37106|SR51_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1... 338 7e-92
gb|AAG29734.1|AC084414_2 (AC084414) signal recognition particle ... 337 2e-91
sp|O42816|SR54_CANAL SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN H... 336 3e-91
pir||F72236 signal recognition particle protein - Thermotoga mar... 336 3e-91
gi|6325345 Signal recognition particle subunit; Srp54p [Saccharo... 335 6e-91
emb|CAA34781.1| (X16908) Srh1p [Saccharomyces cerevisiae] 333 2e-90
dbj|BAB06203.1| (AP001515) signal recognition particle [Bacillus... 328 1e-88
dbj|BAB10763.1| (AB023033) SRP54 (signal recognition particle 54... 328 1e-88
sp|Q00179|SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN H... 326 2e-88
sp|O15821|SR54_ENTHI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN (... 326 2e-88
sp|Q55311|SR54_SYNP7 SIGNAL SEQUENCE BINDING PROTEIN >gi|1279743... 314 2e-84
pir||S68160 probable RNA binding protein ffh - Synechococcus sp.... 314 2e-84
sp|P37105|SR54_BACSU SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 312 4e-84
sp|O67615|SR54_AQUAE SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 310 2e-83
pir||G75346 signal recognition particle protein - Deinococcus ra... 298 6e-80
sp|P74214|SR54_SYNY3 SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 295 5e-79
sp|P44518|SR54_HAEIN SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 293 3e-78
sp|Q54431|SR54_STRMU SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 286 4e-76
pir||B81792 signal recognition particle protein NMA2190 [importe... 285 8e-76
emb|CAB72034.1| (AJ391261) signal recognition particle protein [... 284 2e-75
pir||H82306 signal recognition particle protein VC0560 [imported... 283 3e-75
pir||F81215 signal recognition particle protein NMB0295 [importe... 282 4e-75
gb|AAC24713.1| (AF071565) signal recognition particle [Streptomy... 279 3e-74
pir||T34771 signal recognition particle protein - Streptomyces c... 279 6e-74
sp|Q01442|SR54_MYCMY SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 277 2e-73
sp|P07019|SR54_ECOLI SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 277 2e-73
gb|AAF69242.1|AF173880_5 (AF173880) signal recognition particle ... 277 2e-73
pir||F83178 signal recognition particle protein Ffh PA3746 [impo... 273 3e-72
pir||G82851 signal recognition particle protein XF0073 [imported... 272 6e-72
pir||E70186 signal recognition particle protein (ffh) homolog - ... 271 1e-71
sp|Q10963|SR54_MYCTU SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 268 9e-71
sp|O07347|SR54_THEAQ SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 268 9e-71
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From... 268 9e-71
pir||C81718 signal recognition particle TC0294 [imported] - Chla... 265 6e-70
sp|O33013|SR54_MYCLE SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 264 1e-69
pir||D71566 probable signal recognition particle GTPase - Chlamy... 263 3e-69
sp|P57473|SR54_BUCAI SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 258 7e-68
sp|P37107|SR5C_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN, ... 257 1e-67
gb|AAC64139.1| (AF092168) signal recognition particle 54 kDa sub... 257 1e-67
pir||H81341 signal recognition particle protein Cj0709 [imported... 257 1e-67
emb|CAB90997.1| (AJ239043) signal recognition particle 54Kd homo... 257 1e-67
pir||F71327 probable signal recognition particle protein (ffh) -... 251 1e-65
gb|AAC64109.1| (AF089724) signal recognition particle 54 kDa sub... 250 3e-65
sp|P75054|SR54_MYCPN SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 247 2e-64
sp|Q9ZK62|SR54_HELPJ SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 247 2e-64
pir||A72117 signal recognition particle GTPase - Chlamydophila p... 246 3e-64
pir||E81553 signal recognition particle CP0658 [imported] - Chla... 246 4e-64
pir||C82936 signal recognition particle UU091 [imported] - Ureap... 244 1e-63
sp|Q9ZDZ0|SR54_RICPR SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 243 2e-63
sp|P47294|SR54_MYCGE SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 242 5e-63
sp|P56005|SR54_HELPY SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-... 242 5e-63
pir||S07178 hypothetical protein, 48K (rpsP 5' region) - Escheri... 236 4e-61
dbj|BAA16495.1| (D90888) SIGNAL RECOGNITION PARTICLE PROTEIN (FI... 233 4e-60
pir||A75168 signal recognition particle receptor (dpa) PAB2025 -... 194 2e-48
pir||E71047 probable signal recognition particle protein - Pyroc... 190 3e-47
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognit... 188 9e-47
gb|AAB58327.1| (U95207) signal recognition particle receptor alp... 186 4e-46
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognit... 186 4e-46
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognit... 186 5e-46
sp|O67066|FTSY_AQUAE CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7443... 182 9e-45
sp|Q57739|Y291_METJA PROBABLE SIGNAL RECOGNITION PARTICLE PROTEI... 175 9e-43
dbj|BAB06205.1| (AP001515) signal recognition particle (docking ... 174 2e-42
pir||B82360 cell division protein FtsY VC0147 [imported] - Vibri... 173 3e-42
pir||A72362 cell division protein FtsY - Thermotoga maritima (st... 171 1e-41
pir||G69081 signal recognition particle protein (docking protein... 169 4e-41
sp|P10121|FTSY_ECOLI CELL DIVISION PROTEIN FTSY >gi|72939|pir||C... 168 2e-40
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 167 3e-40
pir||E83598 signal recognition particle receptor FtsY PA0373 [im... 164 1e-39
sp|O30391|FTSY_NEIMC CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1127... 162 9e-39
sp|P44870|FTSY_HAEIN CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1073... 161 1e-38
sp|P57011|FTSY_NEIMB CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1127... 161 1e-38
gb|AAF42961.1|AF090335_1 (AF090335) FtsY [Caulobacter crescentus] 161 1e-38
sp|P57010|FTSY_NEIMA CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1127... 161 1e-38
pir||B72708 probable signal recognition particle protein APE1081... 161 2e-38
sp|P73930|FTSY_SYNY3 CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7443... 158 1e-37
pir||T35664 probable prokaryotic docking protein - Streptomyces ... 157 2e-37
emb|CAC12205.1| (AL445066) probable signal recognition particle ... 157 2e-37
gb|AAG20538.1| (AE005125) signal recognition particle receptor; ... 155 9e-37
gi|11499644 signal recognition particle receptor (dpa) [Archaeog... 154 2e-36
sp|P14929|PILA_NEIGO PROBABLE SIGNAL RECOGNITION PARTICLE PROTEI... 152 6e-36
emb|CAB39375.1| (AJ010319) signal recognition particle [Coryneba... 152 6e-36
emb|CAC02336.1| (AL390114) probable signal recognition particle ... 152 6e-36
sp|P51835|FTSY_BACSU CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1075... 152 8e-36
pir||T48922 probable signal recognition particle receptor alpha ... 152 8e-36
emb|CAB13468.1| (Z99112) signal recognition particle (docking pr... 152 8e-36
sp|Q10969|FTSY_MYCTU CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7477... 152 1e-35
emb|CAA71224.1| (Y10137) homologue [Mycoplasma mycoides] 152 1e-35
sp|P57137|FTSY_BUCAI CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1003... 151 2e-35
emb|CAB40382.1| (AJ010820) chloroplast FtsY homolog [Arabidopsis... 150 3e-35
gb|AAD47910.1|AF120112_1 (AF120112) chloroplast SRP receptor hom... 150 3e-35
pir||T02470 cell division protein ftsY homolog F4I18.25 - Arabid... 150 4e-35
sp|O05948|FTSY_RICPR CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7447... 149 5e-35
pir||D75296 signal recognition particle-docking protein FtsY - D... 149 5e-35
sp|O32861|FTSY_MYCHO CELL DIVISION PROTEIN FTSY HOMOLOG >gi|2292... 147 2e-34
pir||H81326 probable signal recognition particle protein Cj1206c... 145 1e-33
pir||D82930 SRP family of GTP-binding proteins, cell division pr... 142 7e-33
sp|O33010|FTSY_MYCLE CELL DIVISION PROTEIN FTSY HOMOLOG >gi|2251... 140 3e-32
gb|AAD11975.1| (AF072125) signal receptor alpha subunit [Giardia... 99 1e-19
emb|CAB56078.1| (AJ238760) cell division protein [Rickettsia mon... 98 2e-19
emb|CAB56102.1| (AJ238759) cell division protein [Rickettsia sib... 98 3e-19
emb|CAB56092.1| (AJ238761) cell division protein [Rickettsia rhi... 98 3e-19
emb|CAB56097.1| (AJ238758) cell division protein [Rickettsia ric... 97 4e-19
emb|CAB56066.1| (AJ238763) cell division protein [Rickettsia felis] 95 1e-18
emb|CAB56084.1| (AJ238755) cell division protein [Rickettsia pro... 94 3e-18
emb|CAB56072.1| (AJ238762) cell division protein [Rickettsia hel... 92 9e-18
emb|CAB56107.1| (AJ238757) cell division protein [Rickettsia typhi] 92 1e-17
pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subdomain... 87 3e-16
gb|AAC44500.1| (U48883) signal recognition particle protein [Str... 85 1e-15
pir||F82123 probable flagellar biosynthetic protein FlhF VC2068 ... 75 2e-12
>pir||B75165 signal recognition particle, chain srp54 (srp54) PAB0320 -
Pyrococcus abyssi (strain Orsay)
>gi|5457911|emb|CAB49401.1| (AJ248284) signal
recognition particle, subunit SRP54 (srp54) [Pyrococcus
abyssi]
Length = 443
Score = 867 bits (2215), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA
Sbjct: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA
Sbjct: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP
Sbjct: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ
Sbjct: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
Query: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 360
GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL
Sbjct: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 360
Query: 361 PDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYN 420
PDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYN
Sbjct: 361 PDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYN 420
Query: 421 QMKKFFKSMNKRQLLRLARRFGM 443
QMKKFFKSMNKRQLLRLARRFGM
Sbjct: 421 QMKKFFKSMNKRQLLRLARRFGM 443
>pir||H71176 probable signal recognition particle protein - Pyrococcus
horikoshii >gi|3258124|dbj|BAA30807.1| (AP000007) 445aa
long hypothetical signal recognition particle protein
[Pyrococcus horikoshii]
Length = 445
Score = 835 bits (2134), Expect = 0.0
Identities = 422/443 (95%), Positives = 436/443 (98%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVLDSLG+ALSNALKKIARAGSVDEALVKEVVRDIQRAL+QADVNVRLVLKLTKEIQRRA
Sbjct: 3 MVLDSLGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRA 62
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPT+LL VGVQGSGKTTTVAKL
Sbjct: 63 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTVLLTVGVQGSGKTTTVAKL 122
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
AR+FQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDA+KLAKEGVE+FK
Sbjct: 123 ARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKT 182
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
+ VDLIIVDTAGRHKEEKDLIEEMRMIS EI+PHEVILVIDGTIGQQAYNQALAFKEATP
Sbjct: 183 RDVDLIIVDTAGRHKEEKDLIEEMRMISEEIRPHEVILVIDGTIGQQAYNQALAFKEATP 242
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIG GEKIDDLEPFDPARFVSRLLGLGDIQ
Sbjct: 243 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGDIQ 302
Query: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 360
GLLEKFKELEKEVEFTEED++RFL+GKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL
Sbjct: 303 GLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 362
Query: 361 PDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYN 420
PDE+ISVGEERLRKFKVIMDSMTEEELMNP+IINYSRIKRIARGSGTS+KDVKELL QYN
Sbjct: 363 PDELISVGEERLRKFKVIMDSMTEEELMNPEIINYSRIKRIARGSGTSIKDVKELLTQYN 422
Query: 421 QMKKFFKSMNKRQLLRLARRFGM 443
QMKKFFKSMNKRQL RLARRFGM
Sbjct: 423 QMKKFFKSMNKRQLSRLARRFGM 445
>sp|O27376|SR54_METTH PROBABLE SIGNAL RECOGNITION 54 KD PROTEIN (SRP54)
>gi|7440075|pir||F69042 signal recognition particle
protein SRP54 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622427|gb|AAB85799.1| (AE000896)
signal recognition particle protein SRP54
[Methanobacterium thermoautotrophicum]
Length = 442
Score = 513 bits (1308), Expect = e-144
Identities = 257/433 (59%), Positives = 332/433 (76%), Gaps = 4/433 (0%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+L +LG++LS +KK+A VDE +V+EV++DIQRALIQ+DVN++LV L+K I+ RAL
Sbjct: 1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
E+PP GI+ KEHII IVY+E+ K LG ++ + I +KP +L +G+QGSGKTTT+ KLA
Sbjct: 61 NEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVIDDKPYRILFLGLQGSGKTTTIGKLA 120
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
R+ +K+G+ VGVVC+DTWRP A QLKQ + + ++GDP +DA+ LA++G+ F+ K
Sbjct: 121 RYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIYGDPQNRDALDLAEKGLARFQKK 180
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
D+II DTAGRHKEEKDL+ EM +S ++PHE ILVIDGTIGQQA QALAF++AT I
Sbjct: 181 --DVIIFDTAGRHKEEKDLLREMEELSAIVEPHEAILVIDGTIGQQAREQALAFRKATDI 238
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
GSIIVTKLD SAKGGGALSAVA GAPIKFIGTGE+IDDLE FDP RF+SRLLG+GD++
Sbjct: 239 GSIIVTKLDGSAKGGGALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLLGMGDLRS 298
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
LLEK +E+ +E E EE L+ L GKFTL+DM Q E M KMGPL+Q++ M+PG G LP
Sbjct: 299 LLEKVEEVSEE-EIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAG-KLP 356
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
+ + EE +RK+ +IMDSMTEEEL PDII +SRI+RIARGSGT +DVKELL Y
Sbjct: 357 KDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIRRIARGSGTRNEDVKELLKYYRV 416
Query: 422 MKKFFKSMNKRQL 434
KK K + +R++
Sbjct: 417 TKKAMKGLGRRKM 429
>sp|Q57565|SR54_METJA PROBABLE SIGNAL RECOGNITION 54 KD PROTEIN (SRP54)
>gi|2129283|pir||E64312 signal recognition particle
protein - Methanococcus jannaschii
>gi|1590878|gb|AAB98081.1| (U67467) signal recognition
particle, subunit SRP54 [Methanococcus jannaschii]
Length = 451
Score = 499 bits (1271), Expect = e-140
Identities = 259/444 (58%), Positives = 332/444 (74%), Gaps = 7/444 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+LD LG+ L+ AL K+ A VD+ L+KEV++DIQRALIQADVNV+LVLK++KEI+RRAL
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
EEK P G+SKKEHIIKIVYEEL K LG EAK +E+ +K ++L+VG+QGSGKTTT AKL
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNE-KDAIKLAKEGVEHFK 179
AR+ QKRG K ++ +DT+RP AY QLKQL + H+ ++GD K + + KEG+E FK
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D++I+DTAGRHKEEK L+EEM+ I P E+ILVIDGTIGQQA QA AFKEA
Sbjct: 181 K--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAV 238
Query: 240 -PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
IGSIIVTKLD SAKGGGALSAVA T APIKFIG GE IDDLEPFDP +F+SRLLG+GD
Sbjct: 239 GEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
++ LLEK +++ E TEE ++ ++GKFTL ++ QLEA+ MG +K+IL MIPG G
Sbjct: 299 LESLLEKAEDMVDEK--TEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGG 356
Query: 359 SLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQ 418
++P E+ + E +++K+KVI+ SMT+EE NP II SRI+RIARGSGT+ DV+E+L
Sbjct: 357 AMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIRRIARGSGTTENDVREVLRY 416
Query: 419 YNQMKKFFKSMNKRQLLRLARRFG 442
Y K + K ++LR+ G
Sbjct: 417 YETTKNAIDKLRKGKMLRIGGPLG 440
>gi|11498230 signal recognition particle, subunit SRP54 (srp54) [Archaeoglobus
fulgidus] >gi|3334342|sp|O29633|SR54_ARCFU PROBABLE
SIGNAL RECOGNITION 54 KD PROTEIN (SRP54)
>gi|7440074|pir||F69327 signal recognition particle,
subunit SRP54 (srp54) homolog - Archaeoglobus fulgidus
>gi|2650007|gb|AAB90619.1| (AE001062) signal recognition
particle, subunit SRP54 (srp54) [Archaeoglobus fulgidus]
Length = 433
Score = 435 bits (1107), Expect = e-121
Identities = 228/428 (53%), Positives = 306/428 (71%), Gaps = 9/428 (2%)
Query: 8 KALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPA 67
++L +KIA + S+D+ V+E+V++IQRALI+ADVNVR V +++ I++RAL E
Sbjct: 4 ESLKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLP 63
Query: 68 GISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKR 127
++ KE I+KIVYEEL + +G + +EI K +++VG+QGSGKTTT AK+A++F+ R
Sbjct: 64 ALNAKEQILKIVYEELLRGVG---EGLEIPLKKAKIMLVGLQGSGKTTTTAKMAKYFKDR 120
Query: 128 GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLII 187
G KV VV +DTWRP AY QL+QL + Y I +G+ EKDA+K+ K +E K K D+II
Sbjct: 121 GMKVAVVAADTWRPAAYEQLRQLAEEYGITFYGEKGEKDAVKIVKNALE--KLKDHDMII 178
Query: 188 VDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVT 247
+DTAGRH E +LI+EM I+ +P +LV+D IGQ A QA AF EA I II+T
Sbjct: 179 IDTAGRHALEDELIDEMIKIAEVARPDYKLLVLDAAIGQLASKQAQAFHEAIGINGIIIT 238
Query: 248 KLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFK 307
K D +AKGGGALSA G PI FIGTGEK++D E FDPA FVSRLLG+GDI+ L+EK +
Sbjct: 239 KFDGTAKGGGALSAARQIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGDIKALMEKIE 298
Query: 308 ELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIP-GLGYSLPDEVIS 366
+ E E D E FLKG FTLKD+Y Q+EAM KMGP+++I M+P GLG + ++V+
Sbjct: 299 RIASEEEL---DPEAFLKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVME 355
Query: 367 VGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQMKKFF 426
+ +E+++KF+VIMDSMTEEEL+NP II+ SRI+RIA GSGTS ++VKELLN Y MK
Sbjct: 356 MTQEKMKKFRVIMDSMTEEELLNPKIIDSSRIRRIAIGSGTSPQEVKELLNYYKTMKNLM 415
Query: 427 KSMNKRQL 434
K M K +L
Sbjct: 416 KKMKKNKL 423
>emb|CAA69991.1| (Y08735) fifty-four homologue of SRP54 [Acidianus ambivalens]
Length = 451
Score = 430 bits (1093), Expect = e-119
Identities = 223/442 (50%), Positives = 323/442 (72%), Gaps = 10/442 (2%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
L +A++K S + V++ ++++Q++LI ADVNV+LV LT +I+ R EKPP I
Sbjct: 7 LRDAVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYI 66
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAKLARHFQKRG 128
++E IKIVY+EL+ G + +P I +K P ++++VGVQG+GKTTT KLA ++K+G
Sbjct: 67 ERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKG 126
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
+KVG+V +D +RP A QL+QL + V+G+P EKDA+ +AK GVE F ++ +++IIV
Sbjct: 127 FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDAVGIAKRGVEKFLSEKMEIIIV 186
Query: 189 DTAGRHK--EEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246
DTAGRH EE L+EEM+ I IKP EV LVID +IGQ+AY+ A F +A+ IG+II+
Sbjct: 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIII 246
Query: 247 TKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKF 306
TK+D +AKGGGALSAVAATGA IKFIGTGEKID+LE F+P RFV+R+LG+GDI+ +LEK
Sbjct: 247 TKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGMGDIETILEKI 306
Query: 307 KELEKEVEFTEEDLERFL--KGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY--SLPD 362
KE+E + ++ +E + KGK TL+D+Y QL A+RKMGPL ++ +++PG+G +P+
Sbjct: 307 KEVE-NYDKMQKKMEEVISGKGKLTLRDVYNQLIALRKMGPLSKLFQLLPGIGMLGQIPE 365
Query: 363 EVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQM 422
+ + VGEE++RK+ IM+SMT EEL NP II+ SR++RIA GSGT ++DVKEL+ YN M
Sbjct: 366 DQLKVGEEKMRKWLAIMNSMTYEELDNPSIIDKSRMRRIALGSGTEIEDVKELIEHYNLM 425
Query: 423 KKFFKSMNKRQ--LLRLARRFG 442
++ K + +R+ + +L +FG
Sbjct: 426 QRTIKMLKRRKKDVEKLLGQFG 447
>gb|AAK41245.1| Signal recognition particle protein subunit SRP54 (srp54)
[Sulfolobus solfataricus]
Length = 447
Score = 425 bits (1082), Expect = e-118
Identities = 218/432 (50%), Positives = 318/432 (73%), Gaps = 9/432 (2%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
+ +A++K + E V E ++D+Q++LI +DVNV+LV LT +I+ R +EKPP+ +
Sbjct: 5 IRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVL 64
Query: 70 SKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRG 128
+KE I IVY+EL+K G + +P + + P I+++VGVQGSGKTTT KLA ++KRG
Sbjct: 65 ERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 124
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
YKVG+V +D +RP AY QL QL + ++V+G+PN ++ I++AK+GV+ F +D+IIV
Sbjct: 125 YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIV 184
Query: 189 DTAGRHK--EEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246
DTAGRH EE L+EEM+ + + +KP +VILVID +IGQ+AY+ A F +A+PIGS+I+
Sbjct: 185 DTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVII 244
Query: 247 TKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKF 306
TK+D +AKGGGALSAV ATGA IKFIGTGEKID+LE F+ RFVSR+LG+GDI+ +LEK
Sbjct: 245 TKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKV 304
Query: 307 KELEKEVEFTEEDLERFL--KGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP--- 361
K LE E + ++ +E + KGK TL+D+YAQ+ A+RKMGPL ++L+ IPGLG LP
Sbjct: 305 KGLE-EYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPS 363
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
++ + +GEE++R++ ++SMT +EL NP+II+ SR++RIA GSG V++V+ELL YN
Sbjct: 364 EDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKSRMRRIAEGSGLEVEEVRELLEWYNN 423
Query: 422 MKKFFKSMNKRQ 433
M + K + +R+
Sbjct: 424 MNRLLKMVKRRR 435
>emb|CAA73234.1| (Y12702) fifty-four homologue of SRP54 [Sulfolobus acidocaldarius]
Length = 446
Score = 420 bits (1068), Expect = e-116
Identities = 222/440 (50%), Positives = 319/440 (72%), Gaps = 11/440 (2%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
L +A++K + ++A V E ++++Q LI+ADVNVRLV LT I++R EEKPP+ I
Sbjct: 7 LRDAVRKFLGSSDYEKA-VNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSAI 65
Query: 70 SKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRG 128
K+E I IVY+EL++ G + +P + K+ P I+++VGVQGSGKTTT KLA ++K+G
Sbjct: 66 EKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKKKG 125
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
YKVG+V +D +RP AY QL Q+ +I V+G+P K+ I++A G+E F + ++++I+
Sbjct: 126 YKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMNIVII 185
Query: 189 DTAGRHK--EEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246
DTAGRH EE L+EEM+ + ++I P EVILVID +IGQ+AY+ A F +A+PIGS+IV
Sbjct: 186 DTAGRHGYGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASRFHQASPIGSLIV 245
Query: 247 TKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKF 306
+K+D +AKGGGALSAV ATGA IKFIGTGEK+D+LE F+P RFVSRLLGLGDI+ ++EK
Sbjct: 246 SKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLLGLGDIESIIEKI 305
Query: 307 KELEKEVEFTEEDLERFLKG--KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY--SLPD 362
K +E + E E+ +E + G K TL+D+Y QL A+RKMGPL +I +M+PG G +P+
Sbjct: 306 KSVE-DYENLEKRMEDVISGKTKLTLRDIYKQLIALRKMGPLGKIFQMLPGAGILSQVPE 364
Query: 363 EVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQM 422
E + +GEE++R F IM+SMT +EL NP II+ +R++RIA+G+G +V++VKELL QY
Sbjct: 365 EQLKLGEEKIRTFMAIMNSMTYKELDNPSIIDKARMRRIAKGAGVTVEEVKELLKQYQMT 424
Query: 423 KKFFKSMNKRQLLRLARRFG 442
K + +R+ LA+ FG
Sbjct: 425 NNLLKMVKRRK--GLAKLFG 442
>pir||C72556 probable signal recognition protein APE1735 - Aeropyrum pernix
(strain K1) >gi|5105423|dbj|BAA80736.1| (AP000062) 441aa
long hypothetical signal recognition protein [Aeropyrum
pernix]
Length = 441
Score = 418 bits (1063), Expect = e-116
Identities = 218/441 (49%), Positives = 315/441 (70%), Gaps = 9/441 (2%)
Query: 8 KALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPA 67
+ + A+ K R G V E V V+D+QR LI+ADVNV+LVL +T+ I+ RAL+E+PP
Sbjct: 3 EGVRRAVAKFLRGGGVYEKAVDAFVKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPP 62
Query: 68 GISKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAKLARHFQK 126
G+++++ +IKIVYEEL K G + +P ++ + P I+L+VGVQGSGKTTT KLA ++ +
Sbjct: 63 GVTRRDWMIKIVYEELVKLFGGDQEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVR 122
Query: 127 RGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLI 186
RGYKVG+V SDT RPGAY QLK+L + +G+ E D ++A+ G+E ++G +++
Sbjct: 123 RGYKVGLVSSDTHRPGAYEQLKRLAEEAGAMFYGE-REGDPAEIARRGLEDLLSRGAEIV 181
Query: 187 IVDTAGRHK--EEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSI 244
IVDTAGRH EE L++EM+ I+++++P EV LVID +IGQ+A A F ++TPIGSI
Sbjct: 182 IVDTAGRHGHGEEARLLDEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSI 241
Query: 245 IVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLE 304
IVTK+D +A+GGGAL+A A TGA IKFIGTGE + +LEPF P RFV+R+LG+GD++ LLE
Sbjct: 242 IVTKMDGTARGGGALTAAAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGDLESLLE 301
Query: 305 KFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY--SLPD 362
+ K LE+ E + E LKG+ T++ +Y QL AMRK+GPL ++L+M+PG S+ +
Sbjct: 302 RIKSLEEAGEL-DRAAEDVLKGRITMRTIYRQLRAMRKLGPLGKVLQMLPGASMLASIDE 360
Query: 363 EVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQM 422
+ +GEE+++++ I++SMT EEL P+II+ R++RIA GSGTSV DV+ELL Y +
Sbjct: 361 GALKLGEEKMKRWMAIIESMTYEELDRPEIIDKRRMRRIAIGSGTSVDDVRELLVYYKNL 420
Query: 423 KKFFKSMNKRQLLRLARRFGM 443
K K + + + RL RR GM
Sbjct: 421 KTMMKKLKRDK--RLLRRLGM 439
>emb|CAC11655.1| (AL445064) probable signal recognition particle protein
[Thermoplasma acidophilum]
Length = 456
Score = 393 bits (998), Expect = e-108
Identities = 204/441 (46%), Positives = 293/441 (66%), Gaps = 11/441 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL+S +L ++KI + +D+ VKE+ +D+QR L++ADVNV+ VL++TKE++RRA
Sbjct: 1 MVLESFSASLRETIRKITGSSYIDKETVKEISKDLQRILLKADVNVKTVLQVTKEMERRA 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
LEEKPPAG++ ++++++I+YEEL K LG +P +K KP +++VG+ G+GKTTT KL
Sbjct: 61 LEEKPPAGMAHQDYMVRIIYEELLKILG---EPSNVKLKPQTIMLVGLYGNGKTTTAGKL 117
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
AR F K+G G++ +D R AY QLKQ+ + + +GD +EKD ++L K G+E K
Sbjct: 118 ARFFAKKGLNSGLIAADVHRYAAYDQLKQIASEVNAKFYGDQSEKDPVRLIKHGLEQLKD 177
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
V I+DT+GR + +L +E+R I + P EV+++ID T+GQQA +A AF +A
Sbjct: 178 VAVK--IIDTSGRDSMDAELFDEIRRIKEAVAPDEVLMIIDATMGQQAGPEAKAFNDAIG 235
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
+ II+TK+D +AKGGGALSAVA PI FIGTGE +DDLE FDP +F+SRLLGLGD++
Sbjct: 236 VTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLGDLE 295
Query: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQI-----LRMIPG 355
L E +E + E +E E+ + GKF LKDMY E K G +K++ L IPG
Sbjct: 296 SLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPG 355
Query: 356 LGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
+ D I E++LR +++IMDSMT EEL NP+IIN RI RIARG+G +DV+ L
Sbjct: 356 -SQKIDDSKIQSAEDKLRMYRIIMDSMTFEELENPEIINAKRITRIARGAGVREEDVRML 414
Query: 416 LNQYNQMKKFFKSMNKRQLLR 436
L ++ MK K M + L+
Sbjct: 415 LKEFKAMKNNMKMMKGNRGLK 435
>pir||S51597 signal recognition particle 54K protein - tomato (cv. Rentita)
Length = 496
Score = 369 bits (938), Expect = e-101
Identities = 199/433 (45%), Positives = 284/433 (64%), Gaps = 5/433 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++S AL++++ A +DE ++ E + +I RAL+QADV +LV ++ I++
Sbjct: 1 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
E AG +K+ I + VY EL K L +K+ KP++++ VG+QGSGKTTT K
Sbjct: 61 NLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A H QKRG+K +VC+DT+R GA+ QLKQ I +G E D +K+A +GVE FK
Sbjct: 121 YAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ DLIIVDT+GRHK+E L EEMR +S KP VI V+D +IGQ A++QA AF+++
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFRQSV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+G++IVTK+D AKGGGALSAVAAT +P+ IGTGE +D+ E FD FVSRLLG+GD+
Sbjct: 241 AVGAVIVTKMDGHAKGGGALSAVAATKSPVIVIGTGEHMDEFEVFDVKPFVSRLLGMGDL 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
GL+ K +++ ++ E L++ +G FTL+ MY Q ++M KMGPL Q+ M+PG
Sbjct: 301 SGLVNKIQDV-VPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLGQVFSMLPGFSAE 359
Query: 360 -LPDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKELL 416
+P + + +++ +MDSMT+EEL NP I+ SRI RIARGSG V +V E+L
Sbjct: 360 MMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEML 419
Query: 417 NQYNQMKKFFKSM 429
+Y ++ K F M
Sbjct: 420 EEYKRLAKIFSKM 432
>gb|AAG20536.1| (AE005125) signal recognition particle; Srp54 [Halobacterium sp.
NRC-1]
Length = 460
Score = 364 bits (925), Expect = e-100
Identities = 190/428 (44%), Positives = 285/428 (66%), Gaps = 11/428 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVLD LG +L L + + E V +VV++IQR+L+QADV+V LV+ L++ I R+
Sbjct: 1 MVLDDLGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERS 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
LEE+PP G S ++H+++IVYEEL +G ++ PI ++E+ +++ G+QGSGKTTT AK+
Sbjct: 61 LEEEPPGGTSARDHVLRIVYEELVGLVG-DSTPIPLEEQT--IMLAGLQGSGKTTTAAKM 117
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
A F K+G + +V +DT+RPGAY Q ++ D ++ +G+P+ D +++A++G+
Sbjct: 118 AWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFYGEPDSDDPVQIARDGLA--AT 175
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
D+ IVDTAGRH E DLI E+ I ++P +LV+D IGQ A QA F +
Sbjct: 176 ADADVHIVDTAGRHALEDDLIAEIEEIEGVVEPDRSLLVLDAAIGQGAKQQARQFDASIG 235
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
I + +TKLD +AKGGG+L+AV T + I F+G+GE + D+E F+P F+SRLLG+GD++
Sbjct: 236 IDGVAITKLDGTAKGGGSLTAVNETDSTIAFLGSGETVQDIERFEPDSFISRLLGMGDLK 295
Query: 301 GLLEKFKELEKEVEFTEEDL--ERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG- 357
L E+ + +E + +ED E +KG+FTL DM Q++AM MGPL Q++ MIPG+G
Sbjct: 296 QLTERVERAMEETQDDDEDWDPEDLMKGEFTLHDMRKQMQAMDNMGPLDQVMDMIPGMGG 355
Query: 358 ---YSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKE 414
LPD+ + V +ER+R F+VIMDSMTE E+ +P + S+I+RIARGSG V+E
Sbjct: 356 GLMDELPDDAMDVTQERMRGFEVIMDSMTEAEMADPRSVGASQIRRIARGSGQPEDRVRE 415
Query: 415 LLNQYNQM 422
LL+Q+ M
Sbjct: 416 LLDQHKMM 423
>gi|4507215 signal recognition particle 54kD [Homo sapiens]
>gi|11433513|ref|XP_007239.1| signal recognition
particle 54kD [Homo sapiens]
>gi|134884|sp|P13624|SR54_HUMAN SIGNAL RECOGNITION
PARTICLE 54 KDA PROTEIN (SRP54) >gi|89065|pir||S05197
signal recognition particle 54K protein - dog
>gi|1082802|pir||S54143 SRP 54 protein - human
(fragment) >gi|930|emb|CAA34385.1| (X16318) 54k protein
(AA 1-504) [Canis familiaris] >gi|784999|emb|CAA60132.1|
(X86373) SRP 54 [Homo sapiens]
>gi|1256820|gb|AAC50994.1| (U51920) signal recognition
particle [Homo sapiens] >gi|226429|prf||1512310A SRP
protein 54kD [Canis familiaris]
Length = 504
Score = 363 bits (923), Expect = 2e-99
Identities = 194/440 (44%), Positives = 288/440 (65%), Gaps = 17/440 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG+ +++AL+ ++ A ++E ++ +++++ AL++ADVN++LV +L + ++
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAK 119
E+ +G++K++ I V++EL K + K K K +++ VG+QGSGKTTT +K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA ++Q++G+K ++C+DT+R GA+ QLKQ I +G E D + +A EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ ++IIVDT+GRHK+E L EEM ++N I+P ++ V+D +IGQ QA AFK+
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ S+IVTKLD AKGGGALSAVAAT +PI FIGTGE IDD EPF F+S+LLG+GDI
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL++K EL +++ E +E+ G+FTL+DMY Q + + KMGP QIL MIPG G
Sbjct: 301 EGLIDKVNEL--KLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-- 356
Query: 360 LPDEVISVGEE-----RLRKFKVIMDSMTEEELMNPDIINY-----SRIKRIARGSGTSV 409
+ +S G E RL+K IMDSM ++EL + D RI+R+ARGSG S
Sbjct: 357 --TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVST 414
Query: 410 KDVKELLNQYNQMKKFFKSM 429
+DV+ELL QY + + K M
Sbjct: 415 RDVQELLTQYTKFAQMVKKM 434
>gi|6755660 signal recognition particle 54 kDa [Mus musculus]
>gi|134886|sp|P14576|SR54_MOUSE SIGNAL RECOGNITION
PARTICLE 54 KD PROTEIN (SRP54) >gi|54194|emb|CAA34386.1|
(X16319) SRP 54K subunit (AA 1-504) [Mus musculus]
Length = 504
Score = 362 bits (920), Expect = 4e-99
Identities = 194/440 (44%), Positives = 287/440 (65%), Gaps = 17/440 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG+ +++AL+ ++ A ++E ++ +++++ AL++ADVN++LV +L + ++
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAK 119
E+ +G++K++ I V++EL K + K K K +++ VG+QGSGKTTT +K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA ++Q++G+K ++C+DT+R GA+ QLKQ I +G E D + +A EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ ++IIVDT+GRHK+E L EE +SN I+P ++ V+D +IGQ QA AFK+
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEERLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ S+IVTKLD AKGGGALSAVAAT +PI FIGTGE IDD EPF F+S+LLG+GDI
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL++K EL +++ E +E+ G+FTL+DMY Q + + KMGP QIL MIPG G
Sbjct: 301 EGLIDKVNEL--KLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-- 356
Query: 360 LPDEVISVGEE-----RLRKFKVIMDSMTEEELMNPDIINY-----SRIKRIARGSGTSV 409
+ +S G E RL+K IMDSM ++EL + D RI+R+ARGSG S
Sbjct: 357 --TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVST 414
Query: 410 KDVKELLNQYNQMKKFFKSM 429
+DV+ELL QY + + K M
Sbjct: 415 RDVQELLTQYTKFAQMVKKM 434
>sp|P49971|SR51_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1 (SRP54)
>gi|556900|emb|CAA84275.1| (Z34518) 54-kD signal
recognition particle (SRP) specific protein
[Lycopersicon esculentum]
Length = 496
Score = 359 bits (911), Expect = 4e-98
Identities = 198/434 (45%), Positives = 283/434 (64%), Gaps = 7/434 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++S AL++++ A +DE ++ E + +I RAL+QADV +LV ++ I++
Sbjct: 1 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
E AG +K+ I + VY EL K L +K+ KP++++ VG+QGSGKTTT K
Sbjct: 61 NLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDP-NEKDAIKLAKEGVEHF 178
A H QKRG+K +VC+DT+R GA+ QLKQ I +G E D +K+A +GVE F
Sbjct: 121 YAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETF 180
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K + DLIIVDT+GRHK+E L EEMR +S KP VI V+D +IGQ A++QA AF+++
Sbjct: 181 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQAFRQS 240
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+G++IVTK+D AKGGGALS VAAT +P+ FIGTGE +D+ E FD FVSRLLG+GD
Sbjct: 241 VAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
+ GL+ K +++ ++ E L++ +G FTL+ MY Q ++M KMGPL + M+PG
Sbjct: 301 LSGLVNKIQDV-VPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPL-GVFSMLPGFSA 358
Query: 359 S-LPDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKEL 415
+P + + +++ +MDSMT+EEL NP I+ SRI RIARGSG V +V E+
Sbjct: 359 EMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEM 418
Query: 416 LNQYNQMKKFFKSM 429
L +Y ++ K F M
Sbjct: 419 LEEYKRLAKIFSKM 432
>pir||S05198 signal recognition particle 54K protein - mouse
Length = 504
Score = 359 bits (911), Expect = 4e-98
Identities = 192/440 (43%), Positives = 286/440 (64%), Gaps = 17/440 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG+ +++AL+ ++ A ++E ++ +++++ AL++A+ N++LV +L + ++
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEAEFNIKLVKQLRENVKSAI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAK 119
E+ +G++K++ I V++EL K + K K K +++ VG+QGSGKTTT +K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA ++Q++G+K ++C+DT+R GA+ QLKQ I +G E D + +A EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ ++IIVDT+GRHK+E L EE +SN I+P ++ V+D +IGQ QA AFK+
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEERLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ S+IVTKLD AKGGGALSAVAAT +PI FIGTGE IDD EPF F+S+LLG+GDI
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL++K EL +++ E +E+ G+FTL+DMY Q + + KMGP QIL MIPG G
Sbjct: 301 EGLIDKVNEL--KLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-- 356
Query: 360 LPDEVISVGEE-----RLRKFKVIMDSMTEEELMNPDIINY-----SRIKRIARGSGTSV 409
+ +S G E RL+K IMDSM ++EL + D RI+R+ARGSG S
Sbjct: 357 --TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVST 414
Query: 410 KDVKELLNQYNQMKKFFKSM 429
+DV+ELL QY + + K M
Sbjct: 415 RDVQELLTQYTKFAQMVKKM 434
>gb|AAD46831.1|AF160891_1 (AF160891) BcDNA.GM09489 [Drosophila melanogaster]
>gi|7295492|gb|AAF50806.1| (AE003567) Srp54k gene
product [Drosophila melanogaster]
Length = 508
Score = 358 bits (910), Expect = 5e-98
Identities = 193/439 (43%), Positives = 283/439 (63%), Gaps = 15/439 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG+ ++ AL +++A ++E + ++++I AL++ADVN+RLV +L + ++
Sbjct: 1 MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIE-IKEKPTILLMVGVQGSGKTTTVAK 119
++ G++K+ I V++EL K + KP + IK K +++ VG+QGSGKTTT K
Sbjct: 61 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA H+QKR +K +VC+DT+R GAY Q+KQ I +G E D + +A++GV+ FK
Sbjct: 121 LAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+G ++IIVDT+GRHK+E+ L EEM +SN + P +I V+D TIGQ QA AFK+
Sbjct: 181 REGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
IGS+I+TKLD AKGGGALSAVAAT +PI FIGTGE IDDLEPF FVS+LLG+GDI
Sbjct: 241 DIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL++K EL +++ +E LE+ G FT++DMY Q + + KMGP Q + MIPG
Sbjct: 301 EGLIDKVNEL--KLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFS-- 356
Query: 360 LPDEVISVGEE----RLRKFKVIMDSMTEEELMNPDIINY-----SRIKRIARGSGTSVK 410
D + GE+ R+++ +MDSM++ EL N D +R R+A+G+G +
Sbjct: 357 -QDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQPNRCVRVAQGAGVMER 415
Query: 411 DVKELLNQYNQMKKFFKSM 429
+VKEL+ Y + K M
Sbjct: 416 EVKELIAHYTKFSAVVKKM 434
>prf||1512311A SRP protein 54kD [Mus musculus]
Length = 504
Score = 357 bits (907), Expect = 1e-97
Identities = 192/440 (43%), Positives = 285/440 (64%), Gaps = 17/440 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG+ +++AL+ ++ A ++E ++ +++++ AL++A+ N++LV +L + ++
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEAEFNIKLVKQLRENVKSAI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP-IEIKEKPTILLMVGVQGSGKTTTVAK 119
E+ +G++K++ I V++EL K + K K K +++ VG+QGSGKTTT +K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA ++Q++G+K ++C+DT+R GA+ QLKQ I +G E D + +A EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ ++IIVDT+GRHK+E L EE +SN I+P ++ V+D IGQ QA AFK+
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEERLQVSNAIQPDNIVYVMDSDIGQACEAQAKAFKDKV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ S+IVTKLD AKGGGALSAVAAT +PI FIGTGE IDD EPF F+S+LLG+GDI
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL++K EL +++ E +E+ G+FTL+DMY Q + + KMGP QIL MIPG G
Sbjct: 301 EGLIDKVNEL--KLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-- 356
Query: 360 LPDEVISVGEE-----RLRKFKVIMDSMTEEELMNPDIINY-----SRIKRIARGSGTSV 409
+ +S G E RL+K IMDSM ++EL + D RI+R+ARGSG S
Sbjct: 357 --TDFMSKGNEQESMARLKKLMTIMDSMWDQELDSTDGAKVFSKQPGRIQRVARGSGVST 414
Query: 410 KDVKELLNQYNQMKKFFKSM 429
+DV+ELL QY + + K M
Sbjct: 415 RDVQELLTQYTKFAQMVKKM 434
>sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2 (SRP54)
>gi|1076577|pir||S51598 signal recognition particle 54K
protein - tomato (cv. UC82-B) >gi|556902|emb|CAA84288.1|
(Z34527) 54-kD signal recognition particle (SRP)
specific protein [Lycopersicon esculentum]
Length = 499
Score = 356 bits (905), Expect = 2e-97
Identities = 193/433 (44%), Positives = 282/433 (64%), Gaps = 5/433 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++S AL++++ A +DE ++ E + +I RAL+QADV +LV +T I++
Sbjct: 1 MVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
+ AG +K+ I + V+ EL K L K+ KP+I++ VG+QGSGKTTT K
Sbjct: 61 NLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A + QK+G+K +VC+DT+R GA+ QLKQ I +G E D +K+A +GVE FK
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ DLIIVDT+GRHK+E L EEMR ++ KP VI V+D +IGQ A++QA AFK++
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+G++IVTK+D AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG+GD
Sbjct: 241 AVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
G ++K E+ ++ E L++ +G FTL+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 301 SGFMDKIHEV-VPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAE 359
Query: 360 L-PDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKELL 416
L P + + +++++ +MDSMT EEL NP ++ SRI RIARGSG V +V +++
Sbjct: 360 LMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMM 419
Query: 417 NQYNQMKKFFKSM 429
+Y ++ K + M
Sbjct: 420 EEYKRLAKIWSKM 432
>sp|P49968|SR51_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1 (SRP54)
>gi|7440067|pir||T06185 signal recognition particle 54 K
protein - barley >gi|1020000|gb|AAA79354.1| (L48284)
signal recognition particle 54 kDa subunit [Hordeum
vulgare]
Length = 497
Score = 356 bits (904), Expect = 3e-97
Identities = 189/433 (43%), Positives = 281/433 (64%), Gaps = 5/433 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++S AL +++ A +DE ++ E + +I RAL+Q+DV ++V + I++
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
E AG +K+ I + V+ EL L K+ KP++++ VG+QGSGKTTT K
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTTKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A + Q++G+K +VC+DT+R GA+ QLKQ I +G E D +K+A EG+E F+
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFR 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ DLII+DT+GRHK+E L EEMR ++ KP VI V+DG+IGQ A++QA AFK++
Sbjct: 181 KENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+G++I+TKLD AKGGGALSAVAAT +P+ FIGTGE ID+ E FD FVSRLLG+GD+
Sbjct: 241 SVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDL 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
GL++K +++ + E L + +G FTL+ +Y Q + + KMGP+ Q+ M+PG
Sbjct: 301 SGLMDKIQDV-MPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSE 359
Query: 360 L-PDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKELL 416
L P G+ +++++ IMDSMT EL NP ++ SRI RIARGSG ++DV ++L
Sbjct: 360 LMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDML 419
Query: 417 NQYNQMKKFFKSM 429
+Y ++ K + M
Sbjct: 420 EEYKRLAKMWSKM 432
>sp|P49969|SR52_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2 (SRP54)
>gi|7440068|pir||T06186 signal recognition particle 54 K
protein 2 - barley >gi|1020002|gb|AAA79355.1| (L48285)
signal recognition particle 54 kDa subunit [Hordeum
vulgare]
Length = 497
Score = 355 bits (902), Expect = 5e-97
Identities = 189/433 (43%), Positives = 281/433 (64%), Gaps = 5/433 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++S AL +++ A +DE ++ E + +I RAL+Q+DV ++V + I++
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
E AG +K+ I + V+ EL L K+ KP++++ VG+QGSGKTTT K
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTPKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A + Q++G+K +VC+DT+R GA+ QLKQ I +G E D +K+A EG+E F+
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFR 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ DLII+DT+GRHK+E L EEMR ++ KP VI V+DG+IGQ A++QA AFK++
Sbjct: 181 KENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+G++I+TKLD AKGGGALSAVAAT +P+ FIGTGE ID+ E FD FVSRLLG+GD+
Sbjct: 241 SVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDL 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
GL++K +++ + E L + +G FTL+ +Y Q + + KMGP+ Q+ M+PG
Sbjct: 301 SGLMDKIQDV-MPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSE 359
Query: 360 L-PDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKELL 416
L P G+ +++++ IMDSMT EL NP ++ SRI RIARGSG ++DV ++L
Sbjct: 360 LMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDML 419
Query: 417 NQYNQMKKFFKSM 429
+Y ++ K + M
Sbjct: 420 EEYKRLAKMWSKM 432
>sp|P49970|SR53_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 3 (SRP54)
>gi|7440069|pir||T06187 signal recognition particle 54 K
protein 3 - barley >gi|1020004|gb|AAA79356.1| (L48286)
signal recognition particle 54 kDa subunit [Hordeum
vulgare]
Length = 493
Score = 351 bits (890), Expect = 1e-95
Identities = 195/440 (44%), Positives = 282/440 (63%), Gaps = 8/440 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL +G ++S AL ++ A VDE++++E + +I RAL+Q+DV + V L I++
Sbjct: 1 MVLADVGGSISRALA-MSSAAVVDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTV 59
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI--KEKPTILLMVGVQGSGKTTTVA 118
E AG +K+ I V +EL K L T KP + K KP +++ VG+QGSGKTTT
Sbjct: 60 NLEALAAGTNKRRIIETSVGKELCKMLDT-GKPAFVPKKGKPNVVMFVGLQGSGKTTTCT 118
Query: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
K A + Q++G+K +VC+DT+R GA+ QLKQ I +G E D +K+A EG+E F
Sbjct: 119 KYAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKF 178
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
+ + DLII+DT+GRH +E L EEMR ++ KP VI V+DG+IGQ A++QA AFK++
Sbjct: 179 RQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQS 238
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+G++IVTKLD AKGGGALSAVAAT +P+ FIGTGE IDD + F+ FV+RLLG GD
Sbjct: 239 ASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLLGRGD 298
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
+ GL++K + + + E + + +G FTL+ +Y Q + + KMGP+ QI M+PG
Sbjct: 299 LPGLIDKMESI-VPADQQSELVAKLSEGAFTLRLLYEQFQNLLKMGPMSQIFSMLPGFSS 357
Query: 359 SL-PDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKEL 415
L P +E+ +++ IMDSMT EL NP ++ SRI R+ARGSG VKDV E+
Sbjct: 358 ELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKDVMEM 417
Query: 416 LNQYNQMKKFFKSMNKRQLL 435
L +Y ++ K + N +L+
Sbjct: 418 LEEYKRLAKMWSKRNVSKLI 437
>sp|P49967|SR53_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 3 (SRP54)
>gi|515681|gb|AAA66200.1| (U12127) signal recognition
particle 54 kDa subunit [Arabidopsis thaliana]
Length = 495
Score = 350 bits (889), Expect = 2e-95
Identities = 187/434 (43%), Positives = 280/434 (64%), Gaps = 7/434 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++ A+++++ +DE + E + +I RAL+Q+DV+ LV ++ I++
Sbjct: 1 MVLAELGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI--KEKPTILLMVGVQGSGKTTTVA 118
E AG +K+ I + ++ EL K L KP K K ++++ VG+QG+GKTTT
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKRKASVVMFVGLQGAGKTTTCT 119
Query: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
K A + QK+GYK +VC+DT+R GA+ QLKQ I +G E D +K+A EGV+ F
Sbjct: 120 KYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTF 179
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K + DLIIVDT+GRHK+E L EEMR ++ KP VI V+D +IGQ A++QA AFK++
Sbjct: 180 KKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQS 239
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+G++I+TK+D AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG+GD
Sbjct: 240 VAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
G ++K +E+ + + E LE+ +G FTL+ MY Q + + MGPLK++ M+PG+
Sbjct: 300 WSGFVDKLQEVVPK-DQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISA 358
Query: 359 S-LPDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKEL 415
+P + +++++ +MDSMT +EL P + N SR+ RIARGSG V++V E+
Sbjct: 359 EMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSGPKVFNESRMMRIARGSGRQVREVMEM 418
Query: 416 LNQYNQMKKFFKSM 429
L +Y ++ K + M
Sbjct: 419 LEEYKRLAKIWSKM 432
>sp|P21565|SR54_SCHPO SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG (SRP54)
>gi|101076|pir||A33644 signal recognition particle 54K
protein [imported] - fission yeast (Schizosaccharomyces
pombe) >gi|5096|emb|CAA35951.1| (X51613) signal
recognition particle [Schizosaccharomyces pombe]
>gi|173491|gb|AAA35344.1| (M55518) signal recognition
particle 54 kDa subunit [Schizosaccharomyces pombe]
>gi|1262154|emb|CAA94687.1| (Z70720) Srp54
[Schizosaccharomyces pombe] >gi|4678686|emb|CAB41226.1|
(AL049662) signal recognition particle 54 kd protein
homolog [Schizosaccharomyces pombe]
Length = 522
Score = 349 bits (886), Expect = 4e-95
Identities = 192/431 (44%), Positives = 286/431 (65%), Gaps = 10/431 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MV LG+ L++AL ++A SV+E LV ++++I AL++ DVNVRLV +L I+++
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
P GI+ K + K V++EL + + K+ +P++++MVG+QGSGKTTT +K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA H+Q+RG K +V +DT+R GA+ QLKQ + FG E D + +AKEGV+ FK
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D+IIVDT+GRH++E++L EM IS+ I+P + I+++D +IGQ A +Q+ AFKE
Sbjct: 181 NDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETA 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
G++I+TKLD AKGGGALSAVAAT PI FIGTGE I+DLE F P F+S+LLGLGD+
Sbjct: 241 DFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDL 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL+E + L+ + + ++LE+ GKFT++D QL + K+GPL ++ MIPG+
Sbjct: 301 EGLMEHVQSLDFDKKNMVKNLEQ---GKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNM 357
Query: 360 LPDEVISVGEERLRKFKVIMDSMTEEELMNPDII---NYSRIKRIARGSGTSVKDVKELL 416
+ G R+++ I+DSMTE+EL + ++ SR+ R+ARGSGTSV +V+E +
Sbjct: 358 MNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEETI 417
Query: 417 NQ---YNQMKK 424
+Q + QM K
Sbjct: 418 SQVRVFAQMAK 428
>sp|P49966|SR52_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2 (SRP54)
>gi|515679|gb|AAA66199.1| (U12126) signal recognition
particle 54 kDa subunit [Arabidopsis thaliana]
Length = 495
Score = 349 bits (885), Expect = 5e-95
Identities = 193/449 (42%), Positives = 279/449 (61%), Gaps = 11/449 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG + +A++K+ +DE + + + +I RAL+Q+DV+ LV ++ I++
Sbjct: 1 MVLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
E AG +K+ I + ++ EL K L K+ KP +++ VG+QGSGKTTT K
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPRVVMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A + QK+GYK +VC+DT+R GA+ QLKQ I +G D +K+A EGV+ FK
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ DLIIVDT+GRHK++ L EEMR IS KP VI V+D +IGQ A+ QA AFK+
Sbjct: 181 KENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+G++I+TK+D AKGGG LSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG GD+
Sbjct: 241 AVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDM 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGL-GY 358
G + K +E+ + + E LE GKFTL+ MY Q + M MGPLK++ M+PG+
Sbjct: 301 SGFVNKLQEVVPK-DQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAE 359
Query: 359 SLPDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKELL 416
+P+ + ++++ +MDSMT EEL NP + N SRI RIARGSG V++V E+L
Sbjct: 360 MMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEML 419
Query: 417 NQYNQMK------KFFKSMNKRQLLRLAR 439
+Y ++ K K++ K + L++
Sbjct: 420 EEYKRLTTMWGKVKGLKNLEKGNMSALSK 448
>prf||1604366A signal recognition particle 54kD protein [Schizosaccharomyces
pombe]
Length = 522
Score = 347 bits (880), Expect = 2e-94
Identities = 191/431 (44%), Positives = 285/431 (65%), Gaps = 10/431 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MV LG+ L++AL ++A SV+E LV ++++I AL++ DVNVRLV +L I+++
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
P GI+ K + K V++EL + + K+ +P++++MVG+QGSGKTTT +K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA H+Q+RG K +V +DT+R GA+ QLKQ + FG E D + +AKEGV+ FK
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D+IIVDT+GRH++E++L EM IS+ I+P + I+++D +IGQ A +Q+ AFKE
Sbjct: 181 NDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETA 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
G++I+TKLD AKGGGALSAVAAT PI FIGTGE I+DLE F P F+S+LLGLGD+
Sbjct: 241 DFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDL 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+GL+E + L+ + + ++LE+ GKFT++D QL + K+GPL ++ MIPG+
Sbjct: 301 EGLMEHVQSLDFDKKNMVKNLEQ---GKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNM 357
Query: 360 LPDEVISVGEERLRKFKVIMDSMTEEELMNPDII---NYSRIKRIARGSGTSVKDVKELL 416
+ G R+++ I+DSM E+EL + ++ SR+ R+ARGSGTSV +V+E +
Sbjct: 358 MNGMNDEEGSLRMKRMLYIVDSMIEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEETI 417
Query: 417 NQ---YNQMKK 424
+Q + QM K
Sbjct: 418 SQVRVFAQMAK 428
>pir||T21140 hypothetical protein F21D5.7 - Caenorhabditis elegans (fragment)
>gi|3876111|emb|CAA91040.1| (Z54271) contains similarity
to Pfam domain: PF00448 (SRP54-type protein),
Score=445.2, E-value=1.8e-130, N=1~cDNA EST EMBL:M88956
comes from this gene~cDNA EST EMBL:Z14505 comes from
this gene~cDNA EST EMBL:Z14541 comes from this gene~cDNA
EST EMBL:Z1> >gi|3876124|emb|CAA92301.1| (Z68161)
contains similarity to Pfam domain: PF00448 (SRP54-type
protein), Score=445.2, E-value=1.8e-130, N=1~cDNA EST
EMBL:M88956 comes from this gene~cDNA EST EMBL:Z14505
comes from this gene~cDNA EST EMBL:Z14541 comes from
this gene~cDNA EST EMBL:Z1>
Length = 496
Score = 342 bits (867), Expect = 6e-93
Identities = 181/440 (41%), Positives = 279/440 (63%), Gaps = 17/440 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG+ + NA+ K+ ++ ++E + +++++ ALI++DV++RLV +L +++
Sbjct: 1 MVLADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIE-IKEKPTILLMVGVQGSGKTTTVAK 119
E+ G +K+ +I K V+ EL K + P K + + + VG+QGSGKTTT K
Sbjct: 61 NFEEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+A ++Q++G+K ++C+DT+R GA+ QLKQ I +G +E D +K+A EGVE F
Sbjct: 121 MAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFT 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+G ++IIVDT+GRHK+E L EEM +SN + P V+ V+D +IGQ QA AF +
Sbjct: 181 QEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDNVVFVMDASIGQACEAQARAFSQTV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ S+I+TKLDS AKGGGALSAVA T +P+ FIGTGE IDD E F P FV +LLG+GDI
Sbjct: 241 DVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGDI 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
GL++ ++ ++ +E + R +G+FTL+DMY Q + + KMGP QI+ MIPG G
Sbjct: 301 AGLVDMVNDI--GIQDNKELVGRLKQGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFG-- 356
Query: 360 LPDEVISVGEE-----RLRKFKVIMDSMTEEELMNPDIINY-----SRIKRIARGSGTSV 409
E ++ G E RL++ +MDSM+++EL +P +R+ R+ARGSG+
Sbjct: 357 --SEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASELFTKEPNRVARVARGSGSHQ 414
Query: 410 KDVKELLNQYNQMKKFFKSM 429
++V++LL QY + K +
Sbjct: 415 QEVRDLLAQYKKFSDVVKKI 434
>sp|Q99150|SR54_YARLI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG (SRP54)
>gi|1147795|gb|AAC49735.1| (U42418) Srp54p [Yarrowia
lipolytica]
Length = 536
Score = 340 bits (862), Expect = 2e-92
Identities = 190/438 (43%), Positives = 278/438 (63%), Gaps = 15/438 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL+ LGK ++ A +++ G +DEAL +++++ AL+++DVN++LV +L ++++
Sbjct: 1 MVLEDLGKRINGAFANLSKGGDIDEAL-DAMLKEVCSALLESDVNIKLVSQLRQKVKNSV 59
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTE------AKPIEIKEKPTILLMVGVQGSGKT 114
+ P G SKK+ I K +++EL +G + AK K K +++ VG+QGSGKT
Sbjct: 60 --KATPNGASKKKVIQKALFDELVNLVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKT 117
Query: 115 TTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEG 174
T+ KLA ++Q+RG+KVG+VC+DT+R GA+ QLKQ I FG E D + +A EG
Sbjct: 118 TSCTKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGSYTETDPVAVAAEG 177
Query: 175 VEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALA 234
V FK + ++IIVDT+GRH++E +L EM I +KP I+V+D +IGQ A Q+ A
Sbjct: 178 VAKFKKEKFEIIIVDTSGRHRQESELFTEMVDIGAAVKPDSTIMVLDASIGQAAEPQSRA 237
Query: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
FK+A+ GSII+TK+D AKGGGA+SAVAAT PI FIGTGE I DLE F P +F+S+LL
Sbjct: 238 FKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLL 297
Query: 295 GLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIP 354
G+GD+QGL+E + L + + T E ++ +G FTL D+ Q+ M KMG L I MIP
Sbjct: 298 GIGDLQGLMETMQSLNLDQKKTMEHIQ---EGIFTLADLRDQMGNMLKMGSLSSIAGMIP 354
Query: 355 GLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINY---SRIKRIARGSGTSVKD 411
GL G R+++ I+DSM ++EL + I SRI R+ARGS TS+++
Sbjct: 355 GLSGMASSISDEEGTRRIKRMIYILDSMNQKELDSDGSIFKEVPSRITRVARGSETSIRE 414
Query: 412 VKELLNQYNQMKKFFKSM 429
V+E+L Q M M
Sbjct: 415 VEEVLQQQKMMASMASRM 432
>sp|P37106|SR51_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1 (SRP54)
>gi|629560|pir||S42550 signal recognition particle 54K
protein - Arabidopsis thaliana >gi|304111|gb|AAA19728.1|
(L19997) signal recognition particle 54 kDa subunit
[Arabidopsis thaliana]
>gi|5103829|gb|AAD39659.1|AC007591_24 (AC007591)
Identical to gb|L19997 signal recognition particle 54
kDa subunit (Srp54-1) from Arabidopsis thaliana. ESTs
gb|T88590 and gb|T20603 come from this gene
Length = 479
Score = 338 bits (858), Expect = 7e-92
Identities = 188/436 (43%), Positives = 279/436 (63%), Gaps = 12/436 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++ A++++ +DE ++ + + +I RAL+Q+DV+ LV K+ I++
Sbjct: 1 MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI--KEKPTILLMVGVQGSGKTTTVA 118
+ AG +K+ I + +++EL + L KP K KP++++ VG+QG+GKTTT
Sbjct: 61 NLDDLAAGHNKRLIIEQAIFKELCRMLDP-GKPAFAPKKAKPSVVMFVGLQGAGKTTTCT 119
Query: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
K A + QK+GYK +VC+DT+R GA+ QLKQ I +G E D +K+A EGV+ F
Sbjct: 120 KYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRF 179
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K + DLIIVDT+GRHK+ L EEMR ++ +P VI V+D +IGQ A+ QA AFKE
Sbjct: 180 KKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKET 239
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+G++I+TK+D AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG GD
Sbjct: 240 VSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGD 299
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
GL++K +E+ + + E +E +G FTL+ MY Q + ++ PL Q+ M+PG+
Sbjct: 300 WSGLVDKLQEVVPK-DLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGISA 357
Query: 359 SLPDEVISVGEE---RLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVK 413
+ + GEE +++++ +MDSMT +EL NP I N SRI RIARGSG V++V
Sbjct: 358 EMMPK--GHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVM 415
Query: 414 ELLNQYNQMKKFFKSM 429
E+L +Y ++ K K +
Sbjct: 416 EMLEEYKRIAKTMKGI 431
>gb|AAG29734.1|AC084414_2 (AC084414) signal recognition particle 54 kDa protein 2 (SRP54),
putative [Arabidopsis thaliana]
Length = 522
Score = 337 bits (854), Expect = 2e-91
Identities = 188/461 (40%), Positives = 281/461 (60%), Gaps = 34/461 (7%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG ++ A+++++ +DE + E + +I RAL+Q+DV+ LV ++ I++
Sbjct: 1 MVLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI--KEKPTILLMVGVQGSGKTTTVA 118
E AG +K+ I + ++ EL K L KP K K ++++ VG+QG+GKTTT
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCT 119
Query: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG------------------ 160
K A + QK+GYK +VC+DT+R GA+ QLKQ I +G
Sbjct: 120 KYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGRFGLGQYLHISGLKRTSV 179
Query: 161 ---------DPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEI 211
E D +K+A EGV+ FK + DLIIVDT+GRHK+E L EEMR ++
Sbjct: 180 TYMFLCPIIHYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEAT 239
Query: 212 KPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKF 271
KP VI V+D +IGQ A++QA AFK++ +G++I+TK+D AKGGGALSAVAAT +P+ F
Sbjct: 240 KPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIF 299
Query: 272 IGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLK 331
IGTGE +D+ E FD FVSRLLG+GD G ++K +E+ + + E LE+ +G FTL+
Sbjct: 300 IGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPK-DQQPELLEKLSQGNFTLR 358
Query: 332 DMYAQLEAMRKMGPLKQILRMIPGLGYS-LPDEVISVGEERLRKFKVIMDSMTEEEL--M 388
MY Q + + MGPLK++ M+PG+ +P + +++++ +MDSMT +EL
Sbjct: 359 IMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSS 418
Query: 389 NPDIINYSRIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
NP + N SR+ RIARGSG V++V E+L +Y ++ K + M
Sbjct: 419 NPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKM 459
>sp|O42816|SR54_CANAL SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG
>gi|2739331|emb|CAA10999.1| (AJ222805) Srp54 protein
[Candida albicans]
Length = 556
Score = 336 bits (853), Expect = 3e-91
Identities = 197/453 (43%), Positives = 282/453 (61%), Gaps = 28/453 (6%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG L AL + +GS DE ++++++DI AL+++DVNV+LV KL I+ +
Sbjct: 1 MVLADLGSRLRGALSSV-ESGSDDE--IQQMIKDICSALLESDVNVKLVAKLRGNIKNKI 57
Query: 61 LEE---KPPAGISKKEHIIKIVYEELT------------KFLGTEAKPIE------IKEK 99
E K + ++K++ + KI+++EL K L T K I KE
Sbjct: 58 DESNVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKES 117
Query: 100 PTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVF 159
+++ VG+QG+GKTT+ KLA +++KRG+KVG+VC+DT+R GA+ QLKQ +I +
Sbjct: 118 SHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYY 177
Query: 160 GDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILV 219
G E D +K+A EGV+ FK + D+IIVDT+GRH++E+ L EM I ++P + I+V
Sbjct: 178 GSYLEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQPTQTIMV 237
Query: 220 IDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKID 279
+DG+IGQ A +QA AFKE++ GSII+TK+D AKGGGA+SAVAAT PI FIGTGE +
Sbjct: 238 MDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVG 297
Query: 280 DLEPFDPARFVSRLLGLGDIQGLLEKFKELE-KEVEFTEEDLERFLKGKFTLKDMYAQLE 338
DLE F P F+S+LLG+GDIQGL+E + L + E ++ +E +GKFTL+D Q+
Sbjct: 298 DLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQMN 357
Query: 339 AMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPD---IINY 395
KMGPL I MIPGL + ++++ IMDSMT +EL I
Sbjct: 358 NFLKMGPLTNIASMIPGLSNIMSQVGDEETSKKIKNMIYIMDSMTTKELECDGRIFIKEP 417
Query: 396 SRIKRIARGSGTSVKDVKELLNQYNQMKKFFKS 428
SRI R+ARGSG +V +V+ +L Q+ M KS
Sbjct: 418 SRIVRVARGSGCAVVEVEMILQQHRMMSTMAKS 450
>pir||F72236 signal recognition particle protein - Thermotoga maritima (strain
MSB8) >gi|4982134|gb|AAD36632.1|AE001802_1 (AE001802)
signal recognition particle protein [Thermotoga
maritima]
Length = 433
Score = 336 bits (852), Expect = 3e-91
Identities = 176/430 (40%), Positives = 272/430 (62%), Gaps = 6/430 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ ++L + LS K ++ G + E VK+ +R+++ +L++ADVN ++V + + ++AL
Sbjct: 1 MFENLQEKLSRVFKNLSGRGKITEKNVKDAIREVKLSLLEADVNYKVVKEFVDHVLQKAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
E+ ++ + IKIV +EL + +G + +P+ + +P ++MVG+QGSGKTTT AKLA
Sbjct: 61 GEEVLRSLTPDQQFIKIVRDELVRIMGEKNEPLRLVHRPAPIMMVGLQGSGKTTTCAKLA 120
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+ +K G +V +D +RP A QL +L + + V D N K +++ KE V+ ++
Sbjct: 121 KLLKKEGRNPLLVAADLYRPAAVDQLVKLGNQIGVNVVHDYN-KTPVEIVKEAVDVAEST 179
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
G D++IVDTAGR ++++++E+ I + P E++LV+D +GQ A N A F E +
Sbjct: 180 GKDVLIVDTAGRLHIDEEMMKELEEIKKILNPDEILLVVDAMMGQDAVNTAKVFDERLDL 239
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
+VTK+D A+GG LS TG P+KFIGT EK+D LEPF P R +R+LG+GD+
Sbjct: 240 TGFVVTKMDGDARGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRILGMGDVLS 299
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
L+EK E E + E ++ E+FLK +FTL+D QL+ M+K+GPL IL M+PG P
Sbjct: 300 LIEKV-EKELDQEKMKKSAEKFLKAEFTLEDFKEQLQEMKKLGPLSSILEMLPG----AP 354
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
+ + E+ L+K + I++SMT EE NP IIN SR +RIARGSGT+V+DV +LL Y Q
Sbjct: 355 KVDVEMSEKELKKIEAIINSMTIEERRNPGIINASRKRRIARGSGTTVQDVNKLLKSYEQ 414
Query: 422 MKKFFKSMNK 431
MK K M K
Sbjct: 415 MKALMKRMKK 424
>gi|6325345 Signal recognition particle subunit; Srp54p [Saccharomyces
cerevisiae] >gi|1711516|sp|P20424|SR54_YEAST SIGNAL
RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG (SRP54)
>gi|2119053|pir||JX0112 signal recognition particle 54K
protein - yeast (Saccharomyces cerevisiae)
>gi|4542|emb|CAA35952.1| (X51614) signal recognition
particle [Saccharomyces cerevisiae]
>gi|172705|gb|AAA35092.1| (M55517) signal recognition
particle 54 kDa subunit [Saccharomyces cerevisiae]
>gi|1230693|gb|AAB68136.1| (U51033) Signal recognition
particle 54 kd subunit (Swiss Prot. accession number
P20424) [Saccharomyces cerevisiae]
>gi|226740|prf||1604366B signal recognition particle
54kD protein [Saccharomyces cerevisiae]
Length = 541
Score = 335 bits (850), Expect = 6e-91
Identities = 191/446 (42%), Positives = 284/446 (62%), Gaps = 15/446 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDE--ALVKEVVRDIQRALIQADVNVRLVLKLTKEIQR 58
MVL LGK +++A+ A + + D+ V +++ I AL+++DVN+ LV KL I+
Sbjct: 1 MVLADLGKRINSAVNN-AISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRS 59
Query: 59 RALEE----KPPAGISKKEHIIKIVYEELTKFL---GTEAKP-IEIKEKPTILLMVGVQG 110
+ L E K K+ I K V++EL K + G+E K + K K I++ VG+QG
Sbjct: 60 QLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQG 119
Query: 111 SGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKL 170
SGKTT+ KLA ++ KRG+KVG+VC+DT+R GA+ QLKQ I +G E D K+
Sbjct: 120 SGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKV 179
Query: 171 AKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYN 230
A+EG+ FK + D+IIVDT+GRH +E++L +EM ISN IKP++ I+V+D +IGQ A
Sbjct: 180 AEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQ 239
Query: 231 QALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFV 290
Q+ AFKE++ G+II+TK+D A+GGGA+SAVAAT PI FIGTGE I DLE F P F+
Sbjct: 240 QSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFI 299
Query: 291 SRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQIL 350
S+LLG+GDI+ L E+ + + + E + +E KGKFTL D Q++ + KMGPL I
Sbjct: 300 SKLLGIGDIESLFEQLQTVSNK-EDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIA 358
Query: 351 RMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPD---IINYSRIKRIARGSGT 407
+MIPG+ + ++++K ++DSMT+EEL + I +R+ R+A+GSGT
Sbjct: 359 QMIPGMSNMMNQVGEEETSQKMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGT 418
Query: 408 SVKDVKELLNQYNQMKKFFKSMNKRQ 433
SV +V+ +L Q M + ++ ++Q
Sbjct: 419 SVFEVEMILMQQQMMARMAQTATQQQ 444
>emb|CAA34781.1| (X16908) Srh1p [Saccharomyces cerevisiae]
Length = 541
Score = 333 bits (845), Expect = 2e-90
Identities = 190/446 (42%), Positives = 283/446 (62%), Gaps = 15/446 (3%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDE--ALVKEVVRDIQRALIQADVNVRLVLKLTKEIQR 58
MVL LGK +++A+ A + + D+ V +++ I AL+++DVN+ LV KL I+
Sbjct: 1 MVLADLGKRINSAVNN-AISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRS 59
Query: 59 RALEE----KPPAGISKKEHIIKIVYEELTKFL---GTEAKP-IEIKEKPTILLMVGVQG 110
+ L E K K+ I K V++EL K + G+E K + K K I++ VG+QG
Sbjct: 60 QLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQG 119
Query: 111 SGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKL 170
SGKTT+ KLA ++ K G+KVG+VC+DT+R GA+ QLKQ I +G E D K+
Sbjct: 120 SGKTTSCTKLAVYYSKEGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKV 179
Query: 171 AKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYN 230
A+EG+ FK + D+IIVDT+GRH +E++L +EM ISN IKP++ I+V+D +IGQ A
Sbjct: 180 AEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQ 239
Query: 231 QALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFV 290
Q+ AFKE++ G+II+TK+D A+GGGA+SAVAAT PI FIGTGE I DLE F P F+
Sbjct: 240 QSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFI 299
Query: 291 SRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQIL 350
S+LLG+GDI+ L E+ + + + E + +E KGKFTL D Q++ + KMGPL I
Sbjct: 300 SKLLGIGDIESLFEQLQTVSNK-EDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIA 358
Query: 351 RMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPD---IINYSRIKRIARGSGT 407
+MIPG+ + ++++K ++DSMT+EEL + I +R+ R+A+GSGT
Sbjct: 359 QMIPGMSNMMNQVGEEETSQKMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGT 418
Query: 408 SVKDVKELLNQYNQMKKFFKSMNKRQ 433
SV +V+ +L Q M + ++ ++Q
Sbjct: 419 SVFEVEMILMQQQMMARMAQTATQQQ 444
>dbj|BAB06203.1| (AP001515) signal recognition particle [Bacillus halodurans]
Length = 451
Score = 328 bits (831), Expect = 1e-88
Identities = 172/432 (39%), Positives = 273/432 (62%), Gaps = 5/432 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
M +SL + L + LKKI G V E VKE++R+++ AL++ADVN ++V + ++ +A
Sbjct: 1 MAFESLAERLQDTLKKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKQFIANVKEKA 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKP-TILLMVGVQGSGKTTTVAK 119
L ++ ++ + +IK+V EELT +G E I + KP T+++MVG+QG+GKTTT AK
Sbjct: 61 LGQEVMKSLTPGQQVIKVVNEELTALMGGEQSKIAVASKPPTVVMMVGLQGAGKTTTTAK 120
Query: 120 LARHFQKRGYKVGV-VCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
LA H +K+ + + V +D +RP A QL+ L ++ VF ++ +++AK+ +E
Sbjct: 121 LANHLRKKHNRNPILVAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIERA 180
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K + D +++DTAGR +++L++E++ + KP E++LV+D GQ A N A +F E
Sbjct: 181 KEEHHDYVLIDTAGRLHIDEELMDELQQVKEVAKPDEILLVVDAMTGQDAVNVAESFHEQ 240
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+ +++TKLD +GG ALS A T PIKF G GEKID LEPF P R SR+LG+GD
Sbjct: 241 LDVSGVVLTKLDGDTRGGAALSVKAVTNTPIKFAGMGEKIDQLEPFHPERMASRILGMGD 300
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKG-KFTLKDMYAQLEAMRKMGPLKQILRMIPGLG 357
+ L+EK + E + E LE+ ++ FT D QL+ +R MGPL ++L M+PG+
Sbjct: 301 VLTLIEKAQSTVDEEKARE--LEKKMRTMDFTFDDFLEQLDQVRSMGPLDELLGMMPGMN 358
Query: 358 YSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLN 417
+ + + V E+++ + + I+ SMT++E +P IIN SR +RIA+GSGT+++DV LL
Sbjct: 359 KAKGLKNLQVDEKQISRVEAIVRSMTKQEKQDPSIINASRRRRIAKGSGTAIQDVNRLLK 418
Query: 418 QYNQMKKFFKSM 429
Q+ +MKK K M
Sbjct: 419 QFEEMKKMMKQM 430
>dbj|BAB10763.1| (AB023033) SRP54 (signal recognition particle 54 KDa) protein
[Arabidopsis thaliana]
Length = 497
Score = 328 bits (831), Expect = 1e-88
Identities = 185/451 (41%), Positives = 275/451 (60%), Gaps = 13/451 (2%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG + +A++K+ +DE + + + +I RAL+Q+DV+ LV ++ I++
Sbjct: 1 MVLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGS--GKTTTV 117
E AG +K+ I + ++ EL K L K+ KP++++ VG+QG K V
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEVLEKPQLV 120
Query: 118 AKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEH 177
+ +++GYK +VC+DT+R GA+ QLKQ I +G D +K+A EGV+
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDR 180
Query: 178 FKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKE 237
FK + DLIIVDT+GRHK++ L EEMR IS KP VI V+D +IGQ A+ QA AFK+
Sbjct: 181 FKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQ 240
Query: 238 ATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLG 297
+G++I+TK+D AKGGG LSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG G
Sbjct: 241 TVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNG 300
Query: 298 DIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGL- 356
D+ G + K +E+ + + E LE GKFTL+ MY Q + M MGPLK++ M+PG+
Sbjct: 301 DMSGFVNKLQEVVPK-DQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMR 359
Query: 357 GYSLPDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKE 414
+P+ + +++++ +MDSMT EEL NP + N SRI RIARGSG V++V E
Sbjct: 360 AEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVME 419
Query: 415 LLNQYNQMK------KFFKSMNKRQLLRLAR 439
+L +Y ++ K K++ K + L++
Sbjct: 420 MLEEYKRLTTMWGKVKGLKNLEKGNMSALSK 450
>sp|Q00179|SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG
>gi|2119054|pir||JC4572 signal recognition particle 54K
protein homolog - Aspergillus niger
>gi|598061|gb|AAB04946.1| (L38317) srpA gene product
[Aspergillus niger] >gi|1586559|prf||2204256A srpA gene
[Aspergillus niger]
Length = 534
Score = 326 bits (828), Expect = 2e-88
Identities = 182/443 (41%), Positives = 269/443 (60%), Gaps = 7/443 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALV-KEVVRDIQRALIQADVNVRLVLKLTKEIQRR 59
MVL LG+ ++ A+ + R+ ++DE +++++I AL+ ADVNVRLV L K I+
Sbjct: 1 MVLQDLGRRINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSS 60
Query: 60 ALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVA 118
P ++KK I K V++EL + A+P K+ + +++ VG+QG+GKTTT
Sbjct: 61 VNFASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPKKGRSNVIMFVGLQGAGKTTTCT 120
Query: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
KLARH+Q RG+K +VC+DT+R GA+ QLKQ I +G + D +A EGV F
Sbjct: 121 KLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKF 180
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K + ++IIVDT+GRHK+E++L EM I + P + ILV+D TIGQ A Q+ AFK
Sbjct: 181 KKERFEIIIVDTSGRHKQEEELFTEMTQIQTAVTPDQTILVLDSTIGQAAEAQSSAFKAT 240
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
G+II+TK D A GGGA+SAVAAT PI ++GTGE + DLE F+P F+ +LLG+GD
Sbjct: 241 ADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGMGD 300
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
+ GL+E + + K+ +E + +G +TL+D + ++ KMGPL ++ MIPGL
Sbjct: 301 MAGLVEHVQAVTKDSASAKETYKHISEGIYTLRDFRENITSIMKMGPLSKLSGMIPGLSN 360
Query: 359 SLPDEVISVGEERLRKFKVIMDSMTEEELMNPD---IINYSRIKRIARGSGTSVKDVKEL 415
G +LR+ I DSMT EL + SR+ RIA GSGT+V++V++L
Sbjct: 361 LTAGLDDEDGSMKLRRMIYIFDSMTAAELDGDGKMFVEQPSRMVRIACGSGTTVREVEDL 420
Query: 416 LNQYNQMKKFFKSM--NKRQLLR 436
L+Q+ M K + K+Q+ R
Sbjct: 421 LSQHRMMAGMAKRVGGQKKQMQR 443
>sp|O15821|SR54_ENTHI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN (SRP54)
>gi|2347027|emb|CAA73116.1| (Y12515) 54 kDa subunit of
signal recognition particle [Entamoeba histolytica]
Length = 487
Score = 326 bits (828), Expect = 2e-88
Identities = 177/441 (40%), Positives = 279/441 (63%), Gaps = 8/441 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
MVL LG +L AL+K+ + VDE ++ ++++I+ +L+ DVN + ++ I+++
Sbjct: 1 MVLSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKI 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAK 119
E P GI K++ I V+EEL + + + + K+ K +L+MVG+QG+GKTTT+ K
Sbjct: 61 NSEDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITK 120
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA +++ RGYK VV +DT+R GAY QL+ + FG E D +K+A EGV F+
Sbjct: 121 LALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFR 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ D+I+VDT+GRHK++K+L +EM+ + + IKP +I V+DG IGQ A+ QA AFK+A
Sbjct: 181 KEKNDIILVDTSGRHKQDKELFKEMQSVRDAIKPDSIIFVMDGAIGQAAFGQAKAFKDAV 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+GS+I+TKLD + GGGALSAVAAT +PI FIGTGEK++++E FD FV +LLG+GD+
Sbjct: 241 EVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQLLGMGDL 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
+G+ + K+ + E+ + ++ +G T++D QL ++KMG L I++MI G +
Sbjct: 301 KGIAKLAKDFAENAEY-KTMVKHLQEGTLTVRDWKEQLSNLQKMGQLGNIMQMI---GLN 356
Query: 360 LPDEVISVGEERLRKFKVIMDSMTEEEL---MNPDIINYSRIKRIARGSGTSVKDVKELL 416
P E++ + F VI+DSMT+ EL + + SRI+R+ARGSG +++V EL
Sbjct: 357 HPMFQGGNIEKKFKVFMVILDSMTDRELDGSAKTMLNDESRIRRLARGSGRDIREVNELF 416
Query: 417 NQYNQMKKFFKSMNKRQLLRL 437
Q ++ + K +L
Sbjct: 417 EQIKLFQQCIDRLPKAMRAQL 437
>sp|Q55311|SR54_SYNP7 SIGNAL SEQUENCE BINDING PROTEIN >gi|1279743|emb|CAA63054.1|
(X92071) signal sequence binding protein [Synechococcus
sp.]
Length = 485
Score = 314 bits (795), Expect = 2e-84
Identities = 158/433 (36%), Positives = 272/433 (62%), Gaps = 4/433 (0%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ D+L + L A K+ + E+ V+E +++++RAL++ADVN+ +V + ++Q +A+
Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPI-EIKEKPTILLMVGVQGSGKTTTVAKL 120
+ +GI + IK+VY+EL + +G P+ + + PT++LM G+QG+GKTT AKL
Sbjct: 61 GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
A H +K G +V +D +RP A QL L + VF ++ + +++A++GVE +
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 180
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
+G+D +IVDTAGR + + +++EE+ + I PHEV+LV+D IGQ+A + +F E
Sbjct: 181 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG 240
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
I I+TKLD ++GG ALS +G PIKF+G GEK++ L+PF P R SR+LG+GD+
Sbjct: 241 ITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVL 300
Query: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 360
L+EK +E E ++ E+ E+ L KF D Q+ ++ MG L +++IPGLG +
Sbjct: 301 TLVEKAQE-EIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKI 359
Query: 361 PDEVISVGEERLRKFKVIMDSMTEEELMNPDIINY--SRIKRIARGSGTSVKDVKELLNQ 418
DE + GE +L++ + +++SMT +E +PD+++ SR RIA+G G + ++++++ Q
Sbjct: 360 NDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQ 419
Query: 419 YNQMKKFFKSMNK 431
+ QM+ + M++
Sbjct: 420 FQQMRTMMQQMSQ 432
>pir||S68160 probable RNA binding protein ffh - Synechococcus sp. (strain PCC
7942)
Length = 496
Score = 314 bits (795), Expect = 2e-84
Identities = 158/433 (36%), Positives = 272/433 (62%), Gaps = 4/433 (0%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ D+L + L A K+ + E+ V+E +++++RAL++ADVN+ +V + ++Q +A+
Sbjct: 12 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 71
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPI-EIKEKPTILLMVGVQGSGKTTTVAKL 120
+ +GI + IK+VY+EL + +G P+ + + PT++LM G+QG+GKTT AKL
Sbjct: 72 GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 131
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
A H +K G +V +D +RP A QL L + VF ++ + +++A++GVE +
Sbjct: 132 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 191
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
+G+D +IVDTAGR + + +++EE+ + I PHEV+LV+D IGQ+A + +F E
Sbjct: 192 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG 251
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
I I+TKLD ++GG ALS +G PIKF+G GEK++ L+PF P R SR+LG+GD+
Sbjct: 252 ITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVL 311
Query: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 360
L+EK +E E ++ E+ E+ L KF D Q+ ++ MG L +++IPGLG +
Sbjct: 312 TLVEKAQE-EIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKI 370
Query: 361 PDEVISVGEERLRKFKVIMDSMTEEELMNPDIINY--SRIKRIARGSGTSVKDVKELLNQ 418
DE + GE +L++ + +++SMT +E +PD+++ SR RIA+G G + ++++++ Q
Sbjct: 371 NDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQ 430
Query: 419 YNQMKKFFKSMNK 431
+ QM+ + M++
Sbjct: 431 FQQMRTMMQQMSQ 443
>sp|P37105|SR54_BACSU SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|477698|pir||B47154 signal recognition particle chain
ffh - Bacillus subtilis >gi|2309080|dbj|BAA21691.1|
(D14356) Ffh [Bacillus subtilis]
>gi|2633970|emb|CAB13471.1| (Z99112) signal recognition
particle [Bacillus subtilis]
Length = 446
Score = 312 bits (792), Expect = 4e-84
Identities = 173/431 (40%), Positives = 258/431 (59%), Gaps = 3/431 (0%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
M + L L + KI G V E VKE++R+++ AL++ADVN ++V K++ RA
Sbjct: 1 MAFEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERA 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAK 119
+ + ++ + +IK+V EELT+ +G E I + K PT+++MVG+QG+GKTTT K
Sbjct: 61 VGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGK 120
Query: 120 LARHFQKR-GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
LA +K+ K +V +D +RP A QL+ L + VF ++ +++AK+ +E
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K + D +I+DTAGR + +L++E+ + P E+ LV+D GQ A N A +F E
Sbjct: 181 KEEHYDYVILDTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQ 240
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+ +++TKLD +GG ALS A T PIKF G GEK+D LEPF P R SR+LG+GD
Sbjct: 241 LGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGD 300
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
+ L+EK + E + E + ++ FTL D QL +R MGPL ++L+M+PG G
Sbjct: 301 VLTLIEKAQASVDEDKAKELE-QKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGK 359
Query: 359 SLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQ 418
+ I V E++L + I+ SMT E PDIIN SR KRIA+GSGTSV++V LL Q
Sbjct: 360 MKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINASRRKRIAKGSGTSVQEVNRLLKQ 419
Query: 419 YNQMKKFFKSM 429
+++MKK K M
Sbjct: 420 FDEMKKMMKQM 430
>sp|O67615|SR54_AQUAE SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|7440079|pir||E70448 signal recognition particle
receptor protein - Aquifex aeolicus
>gi|2984037|gb|AAC07579.1| (AE000753) signal recognition
particle receptor protein [Aquifex aeolicus]
Length = 454
Score = 310 bits (785), Expect = 2e-83
Identities = 168/430 (39%), Positives = 263/430 (61%), Gaps = 7/430 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+L+ L + S+AL+K+ A + E + + +R+I+ AL++ADV+ ++ K I+ + +
Sbjct: 1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
++ P +S E +IK VYEEL LG E + K +L VG+QG+GKTTT+ K+A
Sbjct: 61 GKEVPKNLSPAEFVIKTVYEELVDILGGEKADL----KKGTVLFVGLQGTGKTTTIGKIA 116
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+K G+KV V +D RP A QL++L + + + A+++A+ V+ K +
Sbjct: 117 NLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFEEGLGAVEIARRAVKRAKEE 176
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
VD +++DTAGR +++L++E++ I P E++ V D GQ A A F E +
Sbjct: 177 SVDYLLLDTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLGL 236
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
+++TK+D A+GG ALS G PIKFIG GEKI+D+EPF P R R+LGLGDIQ
Sbjct: 237 TGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQS 296
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
L+EK +E+ E + + + + G+F L+D+ L +++MGPL ++L MIPG+ L
Sbjct: 297 LVEKAQEVITE-DKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAPQL- 354
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
+ + V E++ +K + I++SMT EE NP IIN SR KRIARGSGT+V DV +LL +Y +
Sbjct: 355 -KHLKVDEKQFKKIEAIINSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEE 413
Query: 422 MKKFFKSMNK 431
MKK + + K
Sbjct: 414 MKKMMRKLQK 423
>pir||G75346 signal recognition particle protein - Deinococcus radiodurans
(strain R1) >gi|6459616|gb|AAF11391.1|AE002024_2
(AE002024) signal recognition particle protein
[Deinococcus radiodurans]
Length = 452
Score = 298 bits (756), Expect = 6e-80
Identities = 162/430 (37%), Positives = 260/430 (59%), Gaps = 7/430 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ +SLG L + L+K+ R + EA VK +R+I+ AL++ADVN + + +A+
Sbjct: 1 MFESLGNKLQDILEKLGRERQLTEAQVKASMREIRMALLEADVNFGVAKDFVARVSEQAV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
++ ++ + +IK+V++EL + LG E+ + +K + MVG+QG+GKTT+ KLA
Sbjct: 61 GQQVLGSLNAGQTVIKLVHDELVQTLGGESAQPSLDKKNNVWFMVGLQGAGKTTSSGKLA 120
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
H++K G KV +V +DT RP A QL+ L + V + + + EH
Sbjct: 121 AHYKKLGRKVLLVAADTQRPAARDQLEVLSKQVGVPVLKVNDGESPAETKARIEEHLARD 180
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
DL+IVDTAGR + ++ L+ ++ + E++P E +LV+D GQ+A N A AF E +
Sbjct: 181 PRDLVIVDTAGRLQIDEGLMNQLAALKAELQPTETLLVVDAMTGQEALNVAQAFDERIGV 240
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
+I+TK+D A+GG ALSA + TG PI F G EK+ LEPF P R R+LG+GD+ G
Sbjct: 241 SGLIMTKMDGDARGGAALSARSVTGKPIYFAGVSEKLSGLEPFYPDRVAGRILGMGDVLG 300
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
L+E+ + + + +E G F L+D+ QL +RK+GPL +++MIPG+ +LP
Sbjct: 301 LIERAQAADLKA------MEVKKPGDFDLEDLLLQLRQLRKLGPLGDLMKMIPGMSRALP 354
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
E ++ E++L++ ++ SMT +E NP II+ SR KRIA+GSG+SV+D+ +LL + Q
Sbjct: 355 -EGFTIDEKQLQRIDAMISSMTVKERRNPKIIDGSRRKRIAQGSGSSVQDINKLLKMHEQ 413
Query: 422 MKKFFKSMNK 431
MK+ K + +
Sbjct: 414 MKEMMKMLGQ 423
>sp|P74214|SR54_SYNY3 SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|7440071|pir||S75847 signal recognition particle 54K
protein homolog ffh - Synechocystis sp. (strain PCC
6803) >gi|1653392|dbj|BAA18306.1| (D90913) signal
recognition particle protein [Synechocystis sp.]
Length = 482
Score = 295 bits (748), Expect = 5e-79
Identities = 159/431 (36%), Positives = 260/431 (59%), Gaps = 5/431 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ D+L L +A KK+ + E+ +KE +++++RAL+ ADVN+++V K+++++AL
Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPI-EIKEKPTILLMVGVQGSGKTTTVAKL 120
+G++ + IKIVY+EL +G P+ + ++ PT++LM G+QG+GKTT AKL
Sbjct: 61 GADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180
A + +K+ +V +D +RP A QLK L + VF ++ + +++A++GVE K
Sbjct: 121 ALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKE 180
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATP 240
GVD +++DTAGR + + ++ E+ I +KP + +LV+D GQ+A N F E
Sbjct: 181 LGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIG 240
Query: 241 IGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQ 300
I I+TKLD +GG ALS +G PIKF+G GEK++ L+PF P R SR+L +GD+
Sbjct: 241 ITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVL 300
Query: 301 GLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSL 360
L+EK +E +V E+ + L+ F D Q+ M+ MG L +L+MIPG+ L
Sbjct: 301 TLVEKAQE-AIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMN-KL 358
Query: 361 PDEVISVGEERLRKFKVIMDSMTEEELMNPDII--NYSRIKRIARGSGTSVKDVKELLNQ 418
I GE+ L++ + ++ SMT EE NPD++ + SR +RIA+GSG S DV +L+
Sbjct: 359 SSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITN 418
Query: 419 YNQMKKFFKSM 429
+ +M+ + M
Sbjct: 419 FTKMRTMMQQM 429
>sp|P44518|SR54_HAEIN SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|1075310|pir||H64048 signal recognition particle 54K
chain homolog ffh - Haemophilus influenzae (strain Rd
KW20) >gi|1573059|gb|AAC21784.1| (U32696) signal
recognition particle protein (ffh) [Haemophilus
influenzae Rd]
Length = 462
Score = 293 bits (742), Expect = 3e-78
Identities = 166/443 (37%), Positives = 263/443 (58%), Gaps = 8/443 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ ++L LS L+ I G + E +KE +R+++ AL++ADV + +V + +++ AL
Sbjct: 1 MFENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
E+ ++ + +KIV EL K +G + + + + P ++LM G+QG+GKTT+V KL
Sbjct: 61 GEEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKL 120
Query: 121 ARHFQKRGYK-VGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A+ ++R K V VV +D +RP A QL+ L ++ F +++ + +AK + K
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
K D++IVDTAGR + ++++E++ + + P E + +D GQ A N A AF EA
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +I+TK+D A+GG ALS TG PIKF+G GEK + LEPF P R SR+LG+GD+
Sbjct: 241 PLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDV 300
Query: 300 QGLLEKFKELEKEV--EFTEEDLERFLKG-KFTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
L+E +LE+ V E E+ ++F KG FTL D QL M+KMG + +L +PG
Sbjct: 301 LSLIE---DLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGA 357
Query: 357 GYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELL 416
V ++ K + I++SMT +E NPDII SR +RIA GSGT V+DV +LL
Sbjct: 358 KNLSEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGSRRRRIALGSGTQVQDVNKLL 417
Query: 417 NQYNQMKKFFKSMNKRQLLRLAR 439
Q+++M++ K M K + ++ R
Sbjct: 418 KQFDEMQRMMKKMRKGGMAKMMR 440
>sp|Q54431|SR54_STRMU SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|1850607|gb|AAB48050.1|AAB48050 (U88582) Ffh
[Streptococcus mutans]
Length = 516
Score = 286 bits (724), Expect = 4e-76
Identities = 160/445 (35%), Positives = 257/445 (56%), Gaps = 3/445 (0%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
M +SL + L K + + E V+EV ++I+ AL++ADV + +V + K +++RA
Sbjct: 1 MAFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRA 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAK 119
+ + + + IIKIV EELT LG+E IE K PTI++MVG+QG+GKTT K
Sbjct: 61 VGHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGK 120
Query: 120 LARHFQKR-GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
LA K + ++ +D +RP A QLK L ++ VF E A+++ +G+
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKILGQQINVPVFDMGTEHSAVEIVSQGLAQA 180
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
K D +++DTAGR + ++ L+ E+R I P+E++LV+D IGQ+A N A F +
Sbjct: 181 KENRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQ 240
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+ +I+TK+D +GG ALS TG PIKF GTGEKI D+E F P R SR+LG+GD
Sbjct: 241 LEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGD 300
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
+ L+EK + + + + + E E+ + F D QL+ ++ MG ++ IL+MIPG+
Sbjct: 301 LLTLIEKASQ-DYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMAN 359
Query: 359 SLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQ 418
+ + V E + + + I+ SMT EE NPD++ SR +RIA GSG + +V + +
Sbjct: 360 NPALANVEVDEGEIARKRAIVSSMTPEERENPDLLTPSRRRRIASGSGNTFVNVNKFIKD 419
Query: 419 YNQMKKFFKSMNKRQLLRLARRFGM 443
+NQ KK + + + ++ ++ G+
Sbjct: 420 FNQAKKMMQGVMSGDMNKVMKQMGI 444
>pir||B81792 signal recognition particle protein NMA2190 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380810|emb|CAB85402.1| (AL162758) signal
recognition particle protein [Neisseria meningitidis
Z2491]
Length = 456
Score = 285 bits (721), Expect = 8e-76
Identities = 162/447 (36%), Positives = 267/447 (59%), Gaps = 12/447 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+LD+L SN LK I + E +KE +R+++ AL++ADV + +V + ++ +AL
Sbjct: 1 MLDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
++ ++ + I +V + LT+ +G E K +++ P ++LM G+QG+GKTTTV KL
Sbjct: 61 GQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAVVLMAGLQGAGKTTTVGKL 120
Query: 121 ARHFQK-RGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
AR + + KV VV +D +RP A QL+ L + ++ F + +++A V++ K
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D+++VDTAGR +++++ E++ + + P E + VID +GQ A N A AF EA
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETLFVIDAMLGQDAVNTAQAFNEAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +++TK+D ++GG ALS TG PIKFIG GEKI+ LEPF P R SR+LG+GD+
Sbjct: 241 PLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGDV 300
Query: 300 QGLLEKFKELEKEVE--FTEEDLERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPG- 355
L+E +++K ++ + ++ KGK F L D Q++ MR MG L+ ++ +PG
Sbjct: 301 LTLIE---DVQKGIDEAAAAKMAKKLQKGKGFDLNDFKEQIQQMRNMGGLENLMSKMPGE 357
Query: 356 LGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
LG E+ + K + I++SMT +E NP ++ SR +RIA G+GT+V++V +L
Sbjct: 358 LGQISKQIPEGTAEKAMGKVEAIINSMTPKERANPALLKASRKRRIAMGAGTTVQEVNKL 417
Query: 416 LNQYNQMK---KFFKSMNKRQLLRLAR 439
L Q+ QM+ K F +L+RLA+
Sbjct: 418 LKQFEQMQQMMKMFSGNGLGKLMRLAK 444
>emb|CAB72034.1| (AJ391261) signal recognition particle protein [Neisseria
meningitidis]
Length = 456
Score = 284 bits (718), Expect = 2e-75
Identities = 161/447 (36%), Positives = 267/447 (59%), Gaps = 12/447 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
++D+L SN LK I + E +KE +R+++ AL++ADV + +V + ++ +AL
Sbjct: 1 MVDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
++ ++ + I +V + LT+ +G E K +++ P ++LM G+QG+GKTTTV KL
Sbjct: 61 GQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAVVLMAGLQGAGKTTTVGKL 120
Query: 121 ARHFQK-RGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
AR + + KV VV +D +RP A QL+ L + ++ F + +++A V++ K
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D+++VDTAGR +++++ E++ + + P E + VID +GQ A N A AF EA
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETLFVIDAMLGQDAVNTAQAFNEAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +++TK+D ++GG ALS TG PIKFIG GEKI+ LEPF P R SR+LG+GD+
Sbjct: 241 PLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGDV 300
Query: 300 QGLLEKFKELEKEVE--FTEEDLERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPG- 355
L+E +++K ++ + ++ KGK F L D Q++ MR MG L+ ++ +PG
Sbjct: 301 LTLIE---DVQKGIDEAAAAKMAKKLQKGKGFDLNDFKEQIQQMRNMGGLENLMSKMPGE 357
Query: 356 LGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
LG E+ + K + I++SMT +E NP ++ SR +RIA G+GT+V++V +L
Sbjct: 358 LGQISKQIPEGTAEKAMGKVEAIINSMTPKERANPALLKASRKRRIAMGAGTTVQEVNKL 417
Query: 416 LNQYNQMK---KFFKSMNKRQLLRLAR 439
L Q+ QM+ K F +L+RLA+
Sbjct: 418 LKQFEQMQQMMKMFSGNGLGKLMRLAK 444
>pir||H82306 signal recognition particle protein VC0560 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654990|gb|AAF93728.1| (AE004142) signal recognition
particle protein [Vibrio cholerae]
Length = 461
Score = 283 bits (716), Expect = 3e-75
Identities = 161/435 (37%), Positives = 257/435 (59%), Gaps = 8/435 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ ++L LS LK I+ G + E +K+ +R+++ AL++ADV + +V ++ A+
Sbjct: 1 MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + IKIV ++L +G + + + + P ++LM G+QG+GKTT+V KL
Sbjct: 61 GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
Query: 121 ARHFQKRGYK-VGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
++ ++R K V VV +D +RP A QL+ L + ++ F ++ I +A ++H K
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
K D++IVDTAGR ++ ++ E++ + I P E + V+D GQ A + A AF +A
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +I+TK+D A+GG ALS TG PIKFIG GEK D LEPF P R SR+LG+GD+
Sbjct: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
Query: 300 QGLLEKFKELEKEV--EFTEEDLERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
L+E +L++ V E E+ ++F + K F L+D QL M+ MG + +L +PG+
Sbjct: 301 LSLIE---DLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGM 357
Query: 357 GYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELL 416
D V + ++ + I++SMT +E NPD+I SR KRIA GSGT V+DV LL
Sbjct: 358 SQLPADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLL 417
Query: 417 NQYNQMKKFFKSMNK 431
Q+ QM+K K M +
Sbjct: 418 KQFTQMQKMMKKMQQ 432
>pir||F81215 signal recognition particle protein NMB0295 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225519|gb|AAF40746.1| (AE002386) signal recognition
particle protein [Neisseria meningitidis MC58]
Length = 456
Score = 282 bits (715), Expect = 4e-75
Identities = 159/442 (35%), Positives = 261/442 (58%), Gaps = 5/442 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+LD+L SN K I + E +KE +R+++ AL++ADV + +V + ++ +AL
Sbjct: 1 MLDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
++ ++ + I +V + LT+ +G E K +++ P ++LM G+QG+GKTTTV KL
Sbjct: 61 GQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAVVLMAGLQGAGKTTTVGKL 120
Query: 121 ARHFQK-RGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
AR + + KV VV +D +RP A QL+ L + ++ F + +++A V++ K
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D+++VDTAGR +++++ E++ + + P E + VID +GQ A N A AF EA
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETLFVIDAMLGQDAVNTAQAFNEAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +++TK+D ++GG ALS TG PIKFIG GEKI+ LEPF P R R+LG+GD+
Sbjct: 241 PLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLAGRILGMGDV 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPG-LG 357
L+E ++ E E + ++ KGK F L D Q++ MR MG L+ ++ +PG LG
Sbjct: 301 LTLIEDVQKGIDE-EAAAKMAKKLHKGKGFDLNDFKEQIQQMRNMGGLENLMSKMPGELG 359
Query: 358 YSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLN 417
E+ + K + I++SMT +E NP ++ SR +RIA G+GT+V++V +LL
Sbjct: 360 QISKQIPEGTAEKAMGKVEAIINSMTPKERANPALLKASRKRRIAMGAGTTVQEVNKLLK 419
Query: 418 QYNQMKKFFKSMNKRQLLRLAR 439
Q+ QM++ K + L +L R
Sbjct: 420 QFEQMQQMMKMFSGNGLGKLMR 441
>gb|AAC24713.1| (AF071565) signal recognition particle [Streptomyces lividans]
Length = 550
Score = 279 bits (707), Expect = 3e-74
Identities = 158/439 (35%), Positives = 256/439 (57%), Gaps = 17/439 (3%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
V D+L LS K + G + EA + R+I+ AL++ADV + +V K+++ R+L
Sbjct: 35 VFDTLSDRLSATFKSLRGKGRLTEADIDATAREIRIALLEADVALPVVRAFMKKVKERSL 94
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + ++KIV EEL LG E + + K+ PT++++ G+QG+GKTT KL
Sbjct: 95 GAEVSKALNPAQQVLKIVNEELVGILGGETRRLRFAKQPPTVIMLAGLQGAGKTTLAGKL 154
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG-DPNEK--DAIKLAKEGVEH 177
+++G+ +V D RP A +QL + + + V+ +P D +K+AK+ +E
Sbjct: 155 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 214
Query: 178 FKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKE 237
KAK DL+IVDTAGR +++L+++ I + + P E++ V+D IGQ+A N A AF++
Sbjct: 215 AKAKVHDLVIVDTAGRLGIDQELMQQAADIRDAVSPDEILFVVDAMIGQEAVNTAEAFRD 274
Query: 238 ATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLG 297
++++KLD A+GG ALS + TG PI F GEK+DD + F P R SR+L +G
Sbjct: 275 GVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRILDMG 334
Query: 298 DIQGLLEKFKELEKEVEFTEEDLERFL------KGK-FTLKDMYAQLEAMRKMGPLKQIL 350
D+ L+E + E F++E+ E+ KG+ FTL D AQ+E +RKMG + ++L
Sbjct: 335 DLLTLIE-----QAEKTFSQEEAEKMASKLASKKGQDFTLDDFLAQMEQVRKMGSISKLL 389
Query: 351 RMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVK 410
M+PG+G + D++ ++ E + + I+ SMT E P IIN SR RIA+GSG V
Sbjct: 390 GMLPGMG-QMKDQINNLDERDVDRTAAIIKSMTPGERQEPTIINGSRRARIAKGSGVEVS 448
Query: 411 DVKELLNQYNQMKKFFKSM 429
VK L+ ++ + +K M
Sbjct: 449 AVKNLVERFFEARKMMSRM 467
>pir||T34771 signal recognition particle protein - Streptomyces coelicolor
>gi|3191979|emb|CAA19378.1| (AL023797) signal
recognition particle protein [Streptomyces coelicolor
A3(2)]
Length = 550
Score = 279 bits (705), Expect = 6e-74
Identities = 158/439 (35%), Positives = 255/439 (57%), Gaps = 17/439 (3%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
V D+L LS K + G + EA + R+I+ AL++ADV + +V K+++ R+L
Sbjct: 35 VFDTLSDRLSATFKSLRGKGRLTEADIDATAREIRIALLEADVALPVVRAFIKKVKERSL 94
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + ++KIV EEL LG E + + K+ PT++++ G+QG+GKTT KL
Sbjct: 95 GAEVSKALNPAQQVLKIVNEELVGILGGETRRLRFAKQPPTVIMLAGLQGAGKTTLAGKL 154
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG-DPNEK--DAIKLAKEGVEH 177
+++G+ +V D RP A +QL + + + V+ +P D +K+AK+ +E
Sbjct: 155 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 214
Query: 178 FKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKE 237
KAK DL+IVDTAGR +++L+++ I + + P E++ V+D IGQ A N A AF++
Sbjct: 215 AKAKVHDLVIVDTAGRLGIDQELMQQAADIRDAVSPDEILFVVDAMIGQDAVNTAEAFRD 274
Query: 238 ATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLG 297
++++KLD A+GG ALS + TG PI F GEK+DD + F P R SR+L +G
Sbjct: 275 GVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRILDMG 334
Query: 298 DIQGLLEKFKELEKEVEFTEEDLERFL------KGK-FTLKDMYAQLEAMRKMGPLKQIL 350
D+ L+E + E F++E+ E+ KG+ FTL D AQ+E +RKMG + ++L
Sbjct: 335 DLLTLIE-----QAEKTFSQEEAEKMASKLASKKGQDFTLDDFLAQMEQVRKMGSISKLL 389
Query: 351 RMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVK 410
M+PG+G + D++ ++ E + + I+ SMT E P IIN SR RIA+GSG V
Sbjct: 390 GMLPGMG-QMKDQINNLDERDVDRTAAIIKSMTPGERQEPTIINGSRRARIAKGSGVEVS 448
Query: 411 DVKELLNQYNQMKKFFKSM 429
VK L+ ++ + +K M
Sbjct: 449 AVKNLVERFFEARKMMSRM 467
>sp|Q01442|SR54_MYCMY SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|479813|pir||S35481 SRPM54 protein - Mycoplasma
mycoides >gi|150210|gb|AAA25441.1| (M91593) SRPM54
[Mycoplasma mycoides]
Length = 447
Score = 277 bits (701), Expect = 2e-73
Identities = 154/423 (36%), Positives = 254/423 (59%), Gaps = 6/423 (1%)
Query: 4 DSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEE 63
D L K + +++K + +++E +KE +++I+ +L++ADVN+ ++ ++++AL
Sbjct: 5 DFLSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGG 64
Query: 64 KPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARH 123
G S + +IKIV+EEL LG E P++I +KP++++MVG+QGSGKTTT KLA
Sbjct: 65 YISEGASAHQQMIKIVHEELVNILGKENAPLDINKKPSVVMMVGLQGSGKTTTANKLAYL 124
Query: 124 FQKRGYK-VGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKG 182
K+ K V +V D +RPGA QL QL + +VF + ++D +K A++ +E+ K
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVF-EKGKQDPVKTAEQALEYAKENN 183
Query: 183 VDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIG 242
D++I+DTAGR + ++ L++E+ + + P+E++LV+DG GQ+ N F + +
Sbjct: 184 FDVVILDTAGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLKLS 243
Query: 243 SIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGL 302
++VTKLD A+GG LS T PIKFIG GE + L F P R RL+G+GDI+ L
Sbjct: 244 GVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDIETL 303
Query: 303 LEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPD 362
E+ E E ++ + R G+F L+D+ QL + KMG L ++++M+P + +
Sbjct: 304 FERAVENIDE-RSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP--INKVSE 360
Query: 363 EVISVGEERLRKFKVIMDSMTEEELMNPDIIN-YSRIKRIARGSGTSVKDVKELLNQYNQ 421
I + +L F ++MDSMT +E +P ++ SR RI +GSG S K+ EL+N + +
Sbjct: 361 SQIQEAQRKLAVFSILMDSMTLKERRDPRVLKAISRKNRIIKGSGRSEKEFNELINSFEK 420
Query: 422 MKK 424
KK
Sbjct: 421 GKK 423
>sp|P07019|SR54_ECOLI SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG) (P48)
>gi|7440070|pir||E65039 signal recognition particle
protein - Escherichia coli >gi|1788963|gb|AAC75659.1|
(AE000347) GTP-binding export factor binds to signal
sequence, GTP and RNA [Escherichia coli K12]
Length = 453
Score = 277 bits (700), Expect = 2e-73
Identities = 155/444 (34%), Positives = 259/444 (57%), Gaps = 10/444 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ D+L LS L+ I+ G + E VK+ +R+++ AL++ADV + +V + ++ +A+
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + +KIV EL +G E + + + + P ++LM G+QG+GKTT+V KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 121 ARHF-QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+ +K KV VV +D +RP A QL+ L + ++ F + + + ++ K
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
K D+++VDTAGR ++ +++E++ + I P E + V+D GQ A N A AF EA
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +++TK+D A+GG ALS TG PIKF+G GEK + LEPF P R SR+LG+GD+
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 300 QGLLEKFKELEKEVEFTEED--LERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
L+E ++E +V+ + + + KG F L D QL M+ MG + ++ +PG+
Sbjct: 301 LSLIE---DIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGM 357
Query: 357 GYSLPDEVISVGEER-LRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
G +PD V S +++ L + + I++SMT +E P+II SR +RIA G G V+DV L
Sbjct: 358 G-QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRL 416
Query: 416 LNQYNQMKKFFKSMNKRQLLRLAR 439
L Q++ M++ K M K + ++ R
Sbjct: 417 LKQFDDMQRMMKKMKKGGMAKMMR 440
>gb|AAF69242.1|AF173880_5 (AF173880) signal recognition particle protein-like protein
[Acidithiobacillus ferrooxidans]
Length = 458
Score = 277 bits (700), Expect = 2e-73
Identities = 163/444 (36%), Positives = 263/444 (58%), Gaps = 10/444 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ D+L + L+ K + G + E +++ +RD++ AL++ADV + +V ++ A+
Sbjct: 1 MFDNLTQKLTQTFKNLRGQGRLSEDNIRDALRDVRLALLEADVALPVVKDFINNVRESAM 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKP-TILLMVGVQGSGKTTTVAKL 120
E ++ + +KIV++EL + +G +++ +P ++L+ G+QGSGKTTT AKL
Sbjct: 61 GEAVVKSLTPGQVFVKIVHDELVQLMGAHNDSLDLSARPPAVILLAGLQGSGKTTTSAKL 120
Query: 121 ARHFQ-KRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A + K +V +V +D +RP A QL L ++VF + +++A++ VE +
Sbjct: 121 ALWLKDKEKKRVLMVSTDVYRPAAMEQLVHLGKDIEVDVFPSSPGQQPVRIAQDAVEAAQ 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D++IVDTAGR + +++ E + ++ +KP E++ V+D GQ A N A AF +A
Sbjct: 181 RGVYDVLIVDTAGRLHVDGEMMAEAQALTAAVKPVELLFVVDAMTGQDAVNTAKAFNDAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKI-DDLEPFDPARFVSRLLGLGD 298
P+ +I+TK D A+GG ALS A TG PIKFIG GEKI LEPF P R SR+LG+GD
Sbjct: 241 PLTGVILTKADGDARGGAALSVRAITGKPIKFIGIGEKIRKGLEPFYPERMASRILGMGD 300
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPGLG 357
I L+E+ ++ + + + + ++ GK F L+D QL + +MG + I+ +PG+G
Sbjct: 301 IVSLVEQVQQ-DVDEDQARKMTQKLRSGKGFDLEDFREQLRQLERMGGMASIMDKLPGMG 359
Query: 358 YSLPDEVISVGEE--RLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
L E S ++ +R+ + I++SMT E +PDII SR +RIA GSGT+V +V +L
Sbjct: 360 -ELSAEAQSAMQDGKPMRRLEAIINSMTPGERHHPDIIKASRRRRIAAGSGTTVTEVNKL 418
Query: 416 LNQYNQMKKFFKSMNK--RQLLRL 437
L Q+ M+K FK M K R L RL
Sbjct: 419 LKQFEMMQKMFKKMGKGGRGLSRL 442
>pir||F83178 signal recognition particle protein Ffh PA3746 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9949914|gb|AAG07133.1|AE004793_10 (AE004793) signal
recognition particle protein Ffh [Pseudomonas
aeruginosa]
Length = 457
Score = 273 bits (690), Expect = 3e-72
Identities = 154/448 (34%), Positives = 260/448 (57%), Gaps = 8/448 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ ++L LS L+ + + E +K+ +R+++ AL++ADV + +V +++ RA+
Sbjct: 1 MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + +KIV EL + +G + + + P ++LM G+QG+GKTTT KL
Sbjct: 61 GTEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVAPPAVILMAGLQGAGKTTTAGKL 120
Query: 121 ARHFQKRGYK-VGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
AR ++R K V VV +D +RP A QL+ L + F + + +A+ + +
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLAGEVGVTFFPSDVSQKPVAIAEAAIREAR 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
K +D++IVDTAGR + D+++E++ + IKP E + V+D GQ A N A AF +A
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMDEIKQVHAAIKPAETLFVVDAMTGQDAANTAKAFNDAL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
P+ +++TK+D A+GG ALS A TG PIKF+G GEK + L+PF P R SR+LG+GD+
Sbjct: 241 PLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRILGMGDV 300
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIP---G 355
L+E+ E + + E+ ++ KGK F L+D QL+ M+ MG L ++ +P G
Sbjct: 301 LSLIEQ-AEQNLDRDKAEKLAKKIKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPMLGG 359
Query: 356 LGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
+ + E++ ++ + I++SMT E +P++I+ SR +RIA GSGT V+DV L
Sbjct: 360 VNLAQMGNAQGAAEKQFKQMEAIINSMTPGERRDPEMISGSRKRRIALGSGTQVQDVGRL 419
Query: 416 LNQYNQMKKFFKSMN-KRQLLRLARRFG 442
+ Q+ QM+K K + K + ++ R G
Sbjct: 420 IKQHKQMQKMMKKVTAKGGMAKMMRGMG 447
>pir||G82851 signal recognition particle protein XF0073 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9104846|gb|AAF82886.1|AE003861_3 (AE003861) signal
recognition particle protein [Xylella fastidiosa]
Length = 434
Score = 272 bits (688), Expect = 6e-72
Identities = 151/410 (36%), Positives = 248/410 (59%), Gaps = 6/410 (1%)
Query: 25 EALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELT 84
E ++E R+++ AL++ADV + +V L + I+ RAL ++ ++ + +IK+V +EL
Sbjct: 3 EENIREATREVRIALLEADVALSVVQALIERIKIRALGQEVFKSLTPGQALIKVVRDELA 62
Query: 85 KFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKLARHF-QKRGYKVGVVCSDTWRPG 142
+G A + + P ++L+ G+QG+GKT+ V KLA++ +KR KV VV +D +RP
Sbjct: 63 AVMGDSASELNLNVPAPAVILLAGLQGAGKTSMVGKLAKYLKEKRKKKVMVVSADVYRPA 122
Query: 143 AYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIE 202
A QL+ L + ++ F E++ + + + K VD+++VDTAGR ++ +++
Sbjct: 123 AIEQLRILSEQVNVLCFPSSVEQNPVDIVHAAIADAKKSFVDVLLVDTAGRLAIDQGMMD 182
Query: 203 EMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAV 262
E++ + + + P E + V+D GQ A N A AF EA P+ +I+TK D A+GGGALS
Sbjct: 183 EIKALHDTLVPVETLFVVDSMTGQDAANTAKAFSEALPLTGVILTKTDGDARGGGALSVR 242
Query: 263 AATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLER 322
TG PIKF+GTGEK+DDL+ F P R R+L +GD+ L+E+ ++ + E T + +
Sbjct: 243 YITGCPIKFVGTGEKVDDLDVFHPDRAAKRILDMGDVLSLVEQVEQAVDQ-EKTAKLAAK 301
Query: 323 FLKG-KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEV-ISVGEERLRKFKVIMD 380
KG KF L DM QLE M+ MG + ++ +PG+G +PD + V + + + I++
Sbjct: 302 VAKGKKFNLNDMKEQLEQMQNMGGINSLMDKLPGMG-QIPDHLKQQVTGKEVPRMIAIIN 360
Query: 381 SMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQMKKFFKSMN 430
SMT++E NP ++N SR RIA+GSG DV +L+ QY QM+K ++
Sbjct: 361 SMTQKERRNPALLNGSRRVRIAKGSGLQPSDVNKLMKQYQQMEKMMSKLS 410
>pir||E70186 signal recognition particle protein (ffh) homolog - Lyme disease
spirochete >gi|2688634|gb|AAC67049.1| (AE001170) signal
recognition particle protein (ffh) [Borrelia
burgdorferi]
Length = 447
Score = 271 bits (686), Expect = 1e-71
Identities = 159/435 (36%), Positives = 248/435 (56%), Gaps = 5/435 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
++L+SLG N + ++ ++++ + E + I+ +L+ ADVN+R++ + I +
Sbjct: 3 LMLESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEES 62
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK--EKPTILLMVGVQGSGKTTTVA 118
K GI K IKIV + L KFLG + + + K + +LM+G+QGSGKTTT A
Sbjct: 63 KGVKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPANKQSYILMLGLQGSGKTTTCA 122
Query: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
KL+ +K KV +V +DT+R A QLK L + VF EKD IK+ K ++
Sbjct: 123 KLSLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFA 182
Query: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
++ D +IVDT GR + E L+EE++ I ++P E ILV+D +GQ A N A F E
Sbjct: 183 ESNFFDSVIVDTRGRLEIESLLVEEIKKIKGILRPAETILVVDSMMGQVAVNIAKEFNEN 242
Query: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+ I +K DS +GG LS + PIKFIG GEKI+DL+ F P R SR+LG+GD
Sbjct: 243 VGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 302
Query: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358
+ L+EK + + + E + + E+ K F +D +Q +R++G + +PG+
Sbjct: 303 VVSLVEKVQSVVDKEEAIKLE-EKINKASFNFEDYLSQFRRIRQVGGFSNFVSFLPGVSK 361
Query: 359 SLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINY-SRIKRIARGSGTSVKDVKELLN 417
S+ + ++ EE K + I+ SMT++E +NP I+N SR KRIA GSGT+V DV +L+
Sbjct: 362 SMLNS-NNLNEESFNKEEAIILSMTKKERINPVILNNPSRKKRIAMGSGTTVFDVNKLIK 420
Query: 418 QYNQMKKFFKSMNKR 432
+++Q K M +
Sbjct: 421 KFSQATLIMKKMKNK 435
>sp|Q10963|SR54_MYCTU SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|7440072|pir||D70747 probable ffh protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1405951|emb|CAA98978.1| (Z74697) ffh [Mycobacterium
tuberculosis]
Length = 525
Score = 268 bits (678), Expect = 9e-71
Identities = 153/436 (35%), Positives = 249/436 (57%), Gaps = 10/436 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ +SL L+ AL+ + G + +A + R+I+ AL++ADV++ +V I+ RA
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKL 120
+ + ++ + ++KIV EEL LG E + + K PT++++ G+QGSGKTT KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG-------DPNEKDAIKLAKE 173
A + +G+ +V D RP A +QL+ + + + VF + D + +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 174 GVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQAL 233
G+ +AK D++IVDTAGR +++L+ + I + I P EV+ V+D IGQ A A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 234 AFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
AF E + +TKLD A+GG ALS TG PI F TGEK++D + F P R SR+
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 294 LGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMI 353
LG+GD+ L+E+ +++ + + EE + G+ TL+D Q+ A+RKMGP+ +L M+
Sbjct: 301 LGMGDVLSLIEQAEQV-FDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGML 359
Query: 354 PGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVK 413
PG + D + V +++L + + I+ MT +E +P IIN SR RIA GSG +V +V
Sbjct: 360 PGAA-QMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINASRRLRIANGSGVTVSEVN 418
Query: 414 ELLNQYNQMKKFFKSM 429
+L+ ++ + +K SM
Sbjct: 419 QLVERFFEARKMMSSM 434
>sp|O07347|SR54_THEAQ SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|2149137|gb|AAB58502.1| (U82109) Ffh [Thermus
aquaticus]
Length = 430
Score = 268 bits (678), Expect = 9e-71
Identities = 153/432 (35%), Positives = 249/432 (57%), Gaps = 12/432 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ L L A+ ++ G + E +K +R+I+RAL+ ADVN+ + + ++ AL
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
++ ++ E I+ VYE L + LG EA+ +K++ + +VG+QGSGKTTT AKLA
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDR-NLWFLVGLQGSGKTTTAAKLA 119
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+++ +G + +V +DT RP A QL+ L + + V + + + + E + +
Sbjct: 120 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 179
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
DLI+VDTAGR + ++ L+ E+ + + P EV+LV+D GQ+A + A AF E +
Sbjct: 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 239
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
+++TKLD A+GG ALSA TG PI F G EK + LEPF P R R+LG+GD+
Sbjct: 240 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVAS 299
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
L EK + E E + E +L+D Q++ ++++GP +IL ++PG+ L
Sbjct: 300 LAEKVRAAGLEAEAPKSAKE------LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGL- 352
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
V E+ +++ + I+ SMT EE +P I+N SR KRIA+GSGTSV++V + + +
Sbjct: 353 ----KVDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKRIAKGSGTSVQEVNRFIKAFEE 408
Query: 422 MKKFFKSMNKRQ 433
MK KS+ K++
Sbjct: 409 MKALMKSLEKKK 420
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus >gi|5822475|pdb|2FFH|B Chain B, The Signal
Sequence Binding Protein Ffh From Thermus Aquaticus
>gi|5822476|pdb|2FFH|C Chain C, The Signal Sequence
Binding Protein Ffh From Thermus Aquaticus
Length = 425
Score = 268 bits (678), Expect = 9e-71
Identities = 153/432 (35%), Positives = 249/432 (57%), Gaps = 12/432 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ L L A+ ++ G + E +K +R+I+RAL+ ADVN+ + + ++ AL
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
++ ++ E I+ VYE L + LG EA+ +K++ + +VG+QGSGKTTT AKLA
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDR-NLWFLVGLQGSGKTTTAAKLA 119
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+++ +G + +V +DT RP A QL+ L + + V + + + + E + +
Sbjct: 120 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 179
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
DLI+VDTAGR + ++ L+ E+ + + P EV+LV+D GQ+A + A AF E +
Sbjct: 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 239
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
+++TKLD A+GG ALSA TG PI F G EK + LEPF P R R+LG+GD+
Sbjct: 240 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVAS 299
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
L EK + E E + E +L+D Q++ ++++GP +IL ++PG+ L
Sbjct: 300 LAEKVRAAGLEAEAPKSAKE------LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGL- 352
Query: 362 DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQ 421
V E+ +++ + I+ SMT EE +P I+N SR KRIA+GSGTSV++V + + +
Sbjct: 353 ----KVDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKRIAKGSGTSVQEVNRFIKAFEE 408
Query: 422 MKKFFKSMNKRQ 433
MK KS+ K++
Sbjct: 409 MKALMKSLEKKK 420
>pir||C81718 signal recognition particle TC0294 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190336|gb|AAF39161.1| (AE002297)
signal recognition particle [Chlamydia muridarum]
Length = 448
Score = 265 bits (671), Expect = 6e-70
Identities = 152/442 (34%), Positives = 251/442 (56%), Gaps = 5/442 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+++SL + LS+ + A V E + + +R+I+ AL+ ADVN + V +++++ +
Sbjct: 1 MINSLSQKLSSIFSSLFTAKRVTEESISDSIREIRLALLDADVNYQAVKDFISKVKQKVI 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
E+ +S + +K ++EEL L ++ + ++ +P ++L G+QG+GKTTT AKLA
Sbjct: 61 GEEVWKHVSPGQQFVKCLHEELAALLSSQQASLLLQGRPAVVLFCGLQGAGKTTTCAKLA 120
Query: 122 RHF--QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+ +K+ KV V D R A QL+ L+ + F E + + +A E V + K
Sbjct: 121 DYVLREKKAKKVLVASCDLKRFSAVDQLEGLIKQTGADFFRKKGE-NPVSMASEAVRYAK 179
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+G DL+IVDTAGR + L++E+ I+ P E++ V++ +GQ A A AF E
Sbjct: 180 DQGYDLLIVDTAGRLHVDDALMDELVAIARVTNPSEILFVMNLAMGQDAVTTAKAFDERL 239
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ I+V+ D A+ G LS + G PIKF G GEKI DL PF+ R+LG+GD
Sbjct: 240 GLTGIVVSMADGDARAGAVLSVKSLLGRPIKFEGCGEKIKDLRPFNAQSMAERILGMGDT 299
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
L++K +E E E E + E+ K FT +D Y Q+ A R++GPL++I+ M+P G
Sbjct: 300 ISLVDKMRECVSEEENKELE-EKLTKATFTYEDFYKQMRAFRRLGPLRKIMNMMPSFGGM 358
Query: 360 LP-DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQ 418
P D+ + E+++++ + I+ SMT EE +N SR+KRIA G G ++ DV + Q
Sbjct: 359 RPSDKDLEESEKQMKRNEAIILSMTPEERKELVELNMSRMKRIAAGCGLTLGDVNQFRKQ 418
Query: 419 YNQMKKFFKSMNKRQLLRLARR 440
Q KKFFK M + ++ ++ ++
Sbjct: 419 MMQSKKFFKGMTREKMEQMGKK 440
>sp|O33013|SR54_MYCLE SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|2251154|emb|CAB10614.1| (Z97369) Ffh protein
[Mycobacterium leprae]
Length = 521
Score = 264 bits (668), Expect = 1e-69
Identities = 152/436 (34%), Positives = 248/436 (56%), Gaps = 10/436 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ +SL L+ ++ + G + +A ++ R+I+ AL +ADV++ +V I+ RA
Sbjct: 1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERAR 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKL 120
+ A ++ + I+KIV EEL LG E + + K PT++++ G+QGSGKTT KL
Sbjct: 61 GTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG-------DPNEKDAIKLAKE 173
A +++G+ +V D RP A +QL+ + + + VF D D + +A
Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180
Query: 174 GVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQAL 233
G+ +AK D++IVDTAGR + +L+ + I I P EV+ V+D IGQ A A
Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 234 AFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
AF +++TKLD A+GG ALS TG PI F TGEK+DD + F P R SR+
Sbjct: 241 AFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300
Query: 294 LGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMI 353
LG+GD+ L+E+ +++ + E E + + G+ TL+D Q+ A+RKMG + +L M+
Sbjct: 301 LGMGDVLSLIEQAEQV-FDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGML 359
Query: 354 PGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVK 413
PG G + + + V +++L + + I+ MT +E +P IIN SR RIA GSG +V +V
Sbjct: 360 PGAG-QVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINASRRLRIANGSGVTVSEVN 418
Query: 414 ELLNQYNQMKKFFKSM 429
+L++++ + +K S+
Sbjct: 419 QLVDRFFEARKMMSSV 434
>pir||D71566 probable signal recognition particle GTPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328415|gb|AAC67615.1|
(AE001277) Signal Recognition Particle GTPase [Chlamydia
trachomatis]
Length = 448
Score = 263 bits (665), Expect = 3e-69
Identities = 151/442 (34%), Positives = 252/442 (56%), Gaps = 5/442 (1%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
++ SL + LSN + A V E + + +R+++ AL+ ADVN + V +++++ +
Sbjct: 1 MISSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVNYQAVKDFIAKVKQKVV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
E+ +S + IK ++EEL+ L +E + ++ P ++L+ G+QG+GKTTT AKLA
Sbjct: 61 GEEVWKHVSPGQQFIKCLHEELSSSLASEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLA 120
Query: 122 RHF--QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+F +K+ KV V D R A QL+ L+ + F D + +A E V+H K
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRREGN-DPVDMAAEAVQHAK 179
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
++G DL++VDTAGR + L++E+ I+ P E + V++ +GQ A A AF E
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAIARVTTPCETLFVMNLAMGQDAVVTAKAFDERL 239
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ ++V+ D A+ G LS + PIKF G GEKI DL PF+ R+LG+GD
Sbjct: 240 GLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGEKIKDLRPFNAQSMAERILGMGDT 299
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
L++K +E E E E + E+ K FT +D + Q+ A R++GPL++I+ M+P G +
Sbjct: 300 ISLVDKMRECISEEENKELE-EKLTKATFTYEDFHKQILAFRRLGPLRKIMNMMPSFGGA 358
Query: 360 LP-DEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQ 418
P D+ + E+++++ + I+ SMT EE ++ SR+KRIA G G ++ DV + Q
Sbjct: 359 KPSDKDLEESEKQMKRNEAIILSMTPEERKELVELSMSRMKRIAAGCGLTLGDVNQFRKQ 418
Query: 419 YNQMKKFFKSMNKRQLLRLARR 440
Q KKFFK M + ++ ++ ++
Sbjct: 419 MMQSKKFFKGMTREKMEQMGKK 440
>sp|P57473|SR54_BUCAI SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|10039062|dbj|BAB13096.1| (AP001119) signal
recognition particle protein [Buchnera sp. APS]
Length = 451
Score = 258 bits (653), Expect = 7e-68
Identities = 150/445 (33%), Positives = 258/445 (57%), Gaps = 11/445 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ ++L + LS++LKKI G + E +KE +R++++AL++ADV + ++ K + ++++++
Sbjct: 1 MFNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSI 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + IKIV EL +G + + E P ++L+VG+QGSGKTT++AKL
Sbjct: 61 GHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKL 120
Query: 121 ARHFQ-KRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+ + K K+ + +DT+R A QLK L D I+ F I++ K +++ K
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
K D++++DTAGR +K ++ E++ I K E +L++D +GQ A N A F
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
I II+TK D ++ G ALS TG PIKFIGTGEKI LEPF P R R+LG+ DI
Sbjct: 241 LISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDI 300
Query: 300 QGLLEKFKELEKEVEFTE-EDLERFLK--GKFTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
L+E ++E++V+ ++ + L + LK F L D Q++ M+K+G L +
Sbjct: 301 MSLIE---DIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKF-SI 356
Query: 357 GYSLPDEV--ISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKE 414
+ L + + ++ + L+K + ++ SMT +E + P II SR +RIA GSGT ++DV +
Sbjct: 357 NHQLSNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGSRKRRIALGSGTQIQDVNK 416
Query: 415 LLNQYNQMKKFFKSMNKRQLLRLAR 439
LL ++ +++ K + + ++ R
Sbjct: 417 LLKNFDDIRRIMKKIKTDGIAKVIR 441
>sp|P37107|SR5C_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN, CHLOROPLAST PRECURSOR
(SRP54) (54 CHLOROPLAST PROTEIN) (54CP) (FFC)
>gi|480296|pir||S36637 signal recognition particle 54CP
protein precursor - Arabidopsis thaliana
>gi|396701|emb|CAA79981.1| (Z21970) 54CP [Arabidopsis
thaliana] >gi|7406404|emb|CAB85514.1| (AL162873) signal
recognition particle 54CP protein precursor [Arabidopsis
thaliana]
Length = 564
Score = 257 bits (651), Expect = 1e-67
Identities = 142/405 (35%), Positives = 237/405 (58%), Gaps = 5/405 (1%)
Query: 28 VKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87
+ E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV++EL K +
Sbjct: 103 IAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLM 162
Query: 88 GTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQ 146
G E ++ K PT++L+ G+QG GKTT AKLA + +K+G ++ D +RP A Q
Sbjct: 163 GGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQ 222
Query: 147 LKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRM 206
L L + + V+ + +AK+G++ K VD++I+DTAGR + +K +++E++
Sbjct: 223 LVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKD 282
Query: 207 ISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATG 266
+ + P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G
Sbjct: 283 VKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSG 342
Query: 267 APIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKG 326
PIK +G GE+++DLEPF P R R+LG+GD+ +EK E+ ++ E E+ ++ +
Sbjct: 343 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQ-EDAEDLQKKIMSA 401
Query: 327 KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEE 386
KF D Q A+ KMG + ++L MIPG+G P + I E+ L + +++ MT EE
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQ-IREAEKNLLVMEAMIEVMTPEE 460
Query: 387 LMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
P+++ S R KRIA+ SG + + V L+ Q QM+ K++
Sbjct: 461 RERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNL 505
>gb|AAC64139.1| (AF092168) signal recognition particle 54 kDa subunit precursor
[Arabidopsis thaliana]
Length = 564
Score = 257 bits (651), Expect = 1e-67
Identities = 142/405 (35%), Positives = 237/405 (58%), Gaps = 5/405 (1%)
Query: 28 VKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87
+ E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV++EL K +
Sbjct: 103 IAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLM 162
Query: 88 GTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQ 146
G E ++ K PT++L+ G+QG GKTT AKLA + +K+G ++ D +RP A Q
Sbjct: 163 GGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQ 222
Query: 147 LKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRM 206
L L + + V+ + +AK+G++ K VD++I+DTAGR + +K +++E++
Sbjct: 223 LVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKD 282
Query: 207 ISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATG 266
+ + P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G
Sbjct: 283 VKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSG 342
Query: 267 APIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKG 326
PIK +G GE+++DLEPF P R R+LG+GD+ +EK E+ ++ E E+ ++ +
Sbjct: 343 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQ-EDAEDLQKKIMSA 401
Query: 327 KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEE 386
KF D Q A+ KMG + ++L MIPG+G P + I E+ L + +++ MT EE
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQ-IREAEKNLLVMEAMIEVMTPEE 460
Query: 387 LMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
P+++ S R KRIA+ SG + + V L+ Q QM+ K++
Sbjct: 461 RERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNL 505
>pir||H81341 signal recognition particle protein Cj0709 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968166|emb|CAB72983.1| (AL139076) signal
recognition particle protein [Campylobacter jejuni]
Length = 445
Score = 257 bits (651), Expect = 1e-67
Identities = 154/429 (35%), Positives = 243/429 (55%), Gaps = 18/429 (4%)
Query: 24 DEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHI--IKIVYE 81
DE +K + +++AL++ADV+ K+TKE+ E+ GI +K+ + IKI E
Sbjct: 21 DEKALKNALETLKKALLKADVHH----KVTKELLTLIEEDAKQNGIGQKQFLNAIKINLE 76
Query: 82 ELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRP 141
+ G + + PT++LM G+QG GKTT+ KLA + + R KV V D R
Sbjct: 77 NILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRL 136
Query: 142 GAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLI 201
A QL+QL + IE+F NEKD I++AKE ++ ++ VD+++VDTAGR ++ L+
Sbjct: 137 AAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM 196
Query: 202 EEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSA 261
+E+R + + + P E+ V D GQ A +F E I +I++K D+ KGG AL
Sbjct: 197 DELRAVKDVLNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGI 256
Query: 262 VAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLE 321
G P++FIG GEK+ DLE F P R VSR++G GD+ L EK + E E + + +
Sbjct: 257 AKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLN-Q 315
Query: 322 RFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG---YSLPDEVISVGEERLRKFKVI 378
+ KG+F D Q+E+++K+G +K ++ MIPGLG ++ D + +E +R K +
Sbjct: 316 KIKKGEFNFNDFLNQMESIKKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIR-IKAM 374
Query: 379 MDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQMKKFFKSMNKR------ 432
+ SMT +E NPD++N +R +RIA G+G S +V L Q++ K K + +
Sbjct: 375 ISSMTPKERENPDLLNNARKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESL 434
Query: 433 -QLLRLARR 440
Q++ ARR
Sbjct: 435 TQMMSQARR 443
>emb|CAB90997.1| (AJ239043) signal recognition particle 54Kd homolog [Buchnera
aphidicola]
Length = 451
Score = 257 bits (651), Expect = 1e-67
Identities = 150/445 (33%), Positives = 258/445 (57%), Gaps = 11/445 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ ++L + LS++LKKI G + E +KE +R++++AL++ADV + ++ K + ++++++
Sbjct: 1 MFNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSI 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + IKIV EL +G + + E P ++L+VG+QGSGKTT++AKL
Sbjct: 61 GHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKL 120
Query: 121 ARHFQ-KRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+ + K K+ + +DT+R A QLK L D I+ F I++ K +++ K
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHNTPIEITKNAIKYAK 180
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
K D++++DTAGR +K ++ E++ I K E +L++D +GQ A N A F
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDL 240
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
I II+TK D ++ G ALS TG PIKFIGTGEKI LEPF P R R+LG+ DI
Sbjct: 241 LISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDI 300
Query: 300 QGLLEKFKELEKEVEFTE-EDLERFLK--GKFTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
L+E ++E++V+ ++ + L + LK F L D Q++ M+K+G L +
Sbjct: 301 MSLIE---DIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKF-SI 356
Query: 357 GYSLPD--EVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKE 414
+ L + +++ + L+K + ++ SMT +E + P II SR +RIA GSGT ++DV +
Sbjct: 357 NHQLSNNTSLLNTDKNTLKKIEAMICSMTPKERIKPLIIKGSRKRRIALGSGTQIQDVNK 416
Query: 415 LLNQYNQMKKFFKSMNKRQLLRLAR 439
LL ++ +++ K + + ++ R
Sbjct: 417 LLKNFDDIRRIMKKIKTDGIAKVIR 441
>pir||F71327 probable signal recognition particle protein (ffh) - syphilis
spirochete >gi|3322699|gb|AAC65403.1| (AE001219) signal
recognition particle protein (ffh) [Treponema pallidum]
Length = 452
Score = 251 bits (634), Expect = 1e-65
Identities = 151/428 (35%), Positives = 237/428 (55%), Gaps = 12/428 (2%)
Query: 10 LSNALKKIARA----GSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
LS + K+I A ++ E ++E V I+RAL+ ADV+VR+V + + + A +
Sbjct: 5 LSASFKRIVGALGGRATISERNIQEAVESIKRALLDADVHVRVVRRFVNQTIQHAQGQTV 64
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIK--EKPTILLMVGVQGSGKTTTVAKLARH 123
A +S + IKIV+E LT FLG + + +K + +I+L++G+QGSGKTT+ AKLA +
Sbjct: 65 LASVSPAQQFIKIVHERLTAFLGEHTRSLHLKGPDTQSIILLLGLQGSGKTTSAAKLAAY 124
Query: 124 FQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGD--PNEKD--AIKLAKEGVEHFK 179
+ G + D R A QL L + V+ P+E+ A+ A+ +++ +
Sbjct: 125 LKDAGRSPLLAACDHVRAAASAQLAVLGTHIGVPVYQHALPHEQQPCALDTARGALQYAR 184
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
+ G D++I+DTAGR + L++E+ ++ + P E +LV D GQ A F A
Sbjct: 185 SHGNDVLIIDTAGRLHVDAALMQELILLKETLVPVETLLVADALTGQTVVRIAEEFHAAV 244
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
I ++++K DS +GG ALS + TG P+ F+GTGE+ D EPF P R R+LG+GDI
Sbjct: 245 GISGVVLSKFDSDTRGGAALSLKSITGQPLLFVGTGERPQDFEPFHPERAAGRILGMGDI 304
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
L+EK ++ E + +FTL DM L+ + KMGPL ++ MIPGL +
Sbjct: 305 VSLVEKAQKAFDAQEHARAQKKTQSHERFTLSDMLDHLQTIEKMGPLHSLVEMIPGLAVA 364
Query: 360 LPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQY 419
+ + + ++ K I+ SMT +E N II SR +RIA GSGTSV DV L+ +
Sbjct: 365 VSADALDA--RAFKRQKAIIQSMTVQERDNFLIIGPSRRRRIAAGSGTSVADVNRLIKNF 422
Query: 420 NQMKKFFK 427
+M+ +
Sbjct: 423 ERMRTLMR 430
>gb|AAC64109.1| (AF089724) signal recognition particle 54 kDa subunit precursor
[Pisum sativum]
Length = 525
Score = 250 bits (631), Expect = 3e-65
Identities = 143/427 (33%), Positives = 241/427 (55%), Gaps = 7/427 (1%)
Query: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
L L +A K+ R + + + E +RDI+RA +ADV++ +V + + + +A+
Sbjct: 42 LTSGLESAWNKLKREEVLTKENIVEPMRDIRRA--RADVSLPVVRRFVQSVTDKAVGVGV 99
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAKLARHF 124
G+ + ++KIV++EL + +G E + PT++L+ G+QG GKTT AKLA +F
Sbjct: 100 TRGVKPDQQLVKIVHDELVQLMGGEVSELTFANSGPTVILLAGLQGVGKTTVCAKLATYF 159
Query: 125 QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVD 184
+K+G +V D +RP A L L + V+ + +AK+G E K K +D
Sbjct: 160 KKQGKSCMLVAGDVYRPAAIDXLTILGKQVDVPVYAAGTDVKPSVIAKQGFEEAKKKKID 219
Query: 185 LIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSI 244
++IVDTAG + +K +++E++ + + P EV+LV+D GQ+A F I
Sbjct: 220 VVIVDTAGSLQIDKAMMDELKEVKQVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGA 279
Query: 245 IVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLE 304
I+TKLD ++GG ALS +G PIK +G GE+++DLEPF P R R+LG+GD+ +E
Sbjct: 280 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVE 339
Query: 305 KFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEV 364
K +E+ E E E+ ++ + KF D+ Q + KMG + ++L MIPG+ P +
Sbjct: 340 KAQEVMLE-EDAEDMQKKIMSAKFDFNDLLKQTRTVAKMGSVSRVLGMIPGMAKVTPAQ- 397
Query: 365 ISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKR--IARGSGTSVKDVKELLNQYNQM 422
I E+ L+ +VI+++MT EE P+++ ++R +A+ SG + + V +L+ Q QM
Sbjct: 398 IREAEKNLQFMEVIIEAMTPEERGKPELLAEFPVRRKSVAQESGKTEQQVSQLVAQLFQM 457
Query: 423 KKFFKSM 429
+ K +
Sbjct: 458 RVRMKKL 464
>sp|P75054|SR54_MYCPN SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|2146649|pir||S73419 signal recognition particle
protein ffh - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1673748|gb|AAB95741.1| (AE000011) signal recognition
particle protein [Mycoplasma pneumoniae]
Length = 450
Score = 247 bits (624), Expect = 2e-64
Identities = 146/426 (34%), Positives = 246/426 (57%), Gaps = 7/426 (1%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
M + + +++K A ++ E V+ V+++I+ AL+ ADVN+ +V K I+ +
Sbjct: 1 MFKSMISSIVMRSMQKKINAQTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQT 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
+ + G ++ ++K++ +EL L + I K +P +++VG+QGSGKTTT KL
Sbjct: 61 VGQTVEPGQDLQKWLLKVIKQELINILSQPNQEITSK-RPLKVMVVGLQGSGKTTTCGKL 119
Query: 121 ARHFQKR-GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
A +K+ K +V D +RP A QL L + VF + + KE V+ FK
Sbjct: 120 AVWLKKQFQQKAMLVALDIYRPAAIDQLATLAEQTE-SVFFAKGTQAPDQTTKEAVKTFK 178
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
G II DTAGR + ++L++E+ I NE+ P E+++V+DG GQ+ N A F
Sbjct: 179 ESGCQAIICDTAGRLQTNQELMDELVAIKNELHPDEILMVVDGLSGQEIINVAKEFHNRL 238
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ I+TKLDS A+ G ALS + PIK +GT EK+ LE F P R SR+LGLGD+
Sbjct: 239 KLTGFIITKLDSDARAGAALSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGDV 298
Query: 300 QGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYS 359
L+EK +E+ + T+ + FL GK L+D+ +E M +MG + I++M+PG +
Sbjct: 299 MTLVEKAEEVFDKQSLTKTVSKMFL-GKMDLEDLLLYMEQMNQMGSVSSIVKMLPG-NLT 356
Query: 360 LPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINY--SRIKRIARGSGTSVKDVKELLN 417
+ D+ + E +++ +KV+++SMT EE +P +IN SR +RI +GSG + ++ +L+
Sbjct: 357 VSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMK 416
Query: 418 QYNQMK 423
++++++
Sbjct: 417 EWSKLQ 422
>sp|Q9ZK62|SR54_HELPJ SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|7440076|pir||D71852 probable signal recognition
particle protein - Helicobacter pylori (strain J99)
>gi|4155673|gb|AAD06659.1| (AE001535) putative SIGNAL
RECOGNITION PARTICLE PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 247 bits (624), Expect = 2e-64
Identities = 150/438 (34%), Positives = 243/438 (55%), Gaps = 17/438 (3%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ +L NAL KI DE + + ++++ L++ DV+ ++ +L K++
Sbjct: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKV----- 53
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTILLMVGVQGSGKTTTVAK 119
E + AG K+ + + + L + L + + PT++LM G+QGSGKTTT AK
Sbjct: 54 ESQTKAGGIGKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAK 113
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA + + + KV + D R A QLK L + +EVF + N K ++A ++ K
Sbjct: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFHEEN-KSVKEIANNALKRAK 172
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D++IVD+AGR +K+L++E++ + + PHEV+ V D GQ A F E
Sbjct: 173 EAQFDVLIVDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEI 232
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ ++++K DS +KGG AL G P++FIG+GEKI DL+ F P R V RL+G GDI
Sbjct: 233 GVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGDI 292
Query: 300 QGLLEKFKELEKEVEFTEEDLERFL-KGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG- 357
L EK + E +DL + L KG+FT D Q+E ++K+G + ++ MIPGLG
Sbjct: 293 ISLAEKTASVLNPNE--AKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGN 350
Query: 358 --YSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
+L D + E ++K K +++SMT++E NP+I+N SR KRIA GSG V ++ +
Sbjct: 351 MASALKDTDLESSLE-VKKIKAMVNSMTKKERENPEILNGSRRKRIALGSGLEVSEINRI 409
Query: 416 LNQYNQMKKFFKSMNKRQ 433
+ +++Q K K + ++
Sbjct: 410 IKRFDQASKMAKRLTNKK 427
>pir||A72117 signal recognition particle GTPase - Chlamydophila pneumoniae
(strain CWL029) >gi|4376378|gb|AAD18268.1| (AE001598)
Signal Recognition Particle GTPase [Chlamydophila
pneumoniae CWL029]
Length = 448
Score = 246 bits (622), Expect = 3e-64
Identities = 147/445 (33%), Positives = 247/445 (55%), Gaps = 11/445 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+++SL + LS+ + + ++E + E +R+++ AL+ ADVN +V +++ + L
Sbjct: 1 MINSLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKIL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
E+ +S + I+ ++EEL FL + I++ P+I+L+ G+QG+GKTTT AKLA
Sbjct: 61 GEEIWKHVSPGQQFIRCLHEELVAFLSDGREEFTIQKTPSIILLCGLQGAGKTTTAAKLA 120
Query: 122 RHF--QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+ K+ KV VV D R A QLK L+ E F E I + + + + K
Sbjct: 121 DYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAE-FYQSQENKPINVVVKALAYAK 179
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
G D +I+DTAGR + +L+EE+ I + +E + V++ +GQ AF ++
Sbjct: 180 ENGHDFVILDTAGRLNIDNELMEELTAIQKVSQANERLFVMNVAMGQDVLATVQAFDQSL 239
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ +I++ D A+ G S G PIKF G GE+I DL FDP R+LG+GD
Sbjct: 240 DLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSMAERILGMGDT 299
Query: 300 QGLLEKFKELEKEVEFTEEDLE---RFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
+++ +E E EED E + + FT +D Y Q++A R+MGPL+++L M+PG
Sbjct: 300 INFVKEMREYISE----EEDAELGKKLVTAAFTYEDYYKQMKAFRRMGPLRKLLGMMPGF 355
Query: 357 GYSLPDE-VISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
+ P + I E+++++ + I+ SMT EE ++ SR+KRIA G G ++ DV +
Sbjct: 356 NNAKPSQKEIEDSEQQMKRTEAIILSMTPEERKELVELDMSRMKRIASGCGLTLGDVNQF 415
Query: 416 LNQYNQMKKFFKSMNKRQLLRLARR 440
Q +Q KKFFK M+K ++ ++ ++
Sbjct: 416 RKQMSQSKKFFKGMSKGKMEQVRKK 440
>pir||E81553 signal recognition particle CP0658 [imported] - Chlamydophila
pneumoniae (strain AR39) >gi|7189572|gb|AAF38471.1|
(AE002223) signal recognition particle protein FFH
[Chlamydophila pneumoniae AR39]
>gi|8978489|dbj|BAA98326.1| (AP002545) signal
recognition particle GTPase [Chlamydophila pneumoniae
J138]
Length = 448
Score = 246 bits (621), Expect = 4e-64
Identities = 147/445 (33%), Positives = 247/445 (55%), Gaps = 11/445 (2%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+++SL + LS+ + + ++E + E +R+++ AL+ ADVN +V +++ + L
Sbjct: 1 MINSLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKIL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
E+ +S + I+ ++EEL FL + I++ P+I+L+ G+QG+GKTTT AKLA
Sbjct: 61 GEEIWKHVSPGQQFIRCLHEELVAFLSDGREEFTIQKTPSIILLCGLQGAGKTTTAAKLA 120
Query: 122 RHF--QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
+ K+ KV VV D R A QLK L+ E F E I + + + + K
Sbjct: 121 DYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAE-FYQSQENKPIDVVVKALAYAK 179
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
G D +I+DTAGR + +L+EE+ I + +E + V++ +GQ AF ++
Sbjct: 180 ENGHDFVILDTAGRLNIDNELMEELTAIQKVSQANERLFVMNVAMGQDVLATVQAFDQSL 239
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ +I++ D A+ G S G PIKF G GE+I DL FDP R+LG+GD
Sbjct: 240 DLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSMAERILGMGDT 299
Query: 300 QGLLEKFKELEKEVEFTEEDLE---RFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGL 356
+++ +E E EED E + + FT +D Y Q++A R+MGPL+++L M+PG
Sbjct: 300 INFVKEMREYISE----EEDAELGKKLVTAAFTYEDYYKQMKAFRRMGPLRKLLGMMPGF 355
Query: 357 GYSLPDE-VISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
+ P + I E+++++ + I+ SMT EE ++ SR+KRIA G G ++ DV +
Sbjct: 356 NNAKPSQKEIEDSEQQMKRTEAIILSMTPEERKELVELDMSRMKRIASGCGLTLGDVNQF 415
Query: 416 LNQYNQMKKFFKSMNKRQLLRLARR 440
Q +Q KKFFK M+K ++ ++ ++
Sbjct: 416 RKQMSQSKKFFKGMSKGKMEQVRKK 440
>pir||C82936 signal recognition particle UU091 [imported] - Ureaplasma
urealyticum >gi|6899044|gb|AAF30497.1|AE002108_10
(AE002108) signal recognition particle [Ureaplasma
urealyticum]
Length = 448
Score = 244 bits (617), Expect = 1e-63
Identities = 143/429 (33%), Positives = 235/429 (54%), Gaps = 6/429 (1%)
Query: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
+G +S + K + ++ E +KE++ +I+ AL+ ADVN+ +V K K I+ + +
Sbjct: 6 IGSIVSKQMSKKLKNATIVEEDIKELLSEIRIALLDADVNLLVVKKFIKNIKEKTIGLYV 65
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQ 125
A + ++KI+ +EL + LG E KP+ + ++MVG+QGSGKTTT KLA +F+
Sbjct: 66 EANQKPADLVLKIIKDELVEILGKENKPVNTAKSQLKIMMVGLQGSGKTTTTGKLANYFK 125
Query: 126 -KRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVD 184
K K +V +D +RP A QL+ L ++ + + ++ + + K + +
Sbjct: 126 NKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFWEEGTQRPDL-IVKNALNKADENENN 184
Query: 185 LIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSI 244
LIIVDTAGR + ++L++E+ + + P EV LV+D GQ N A F + I
Sbjct: 185 LIIVDTAGRLQTNEELMQELVNVKKTLNPDEVFLVVDAMAGQDIINVATEFNNWLKLTGI 244
Query: 245 IVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLE 304
IVTKLDS A+ G LS + PIKF GTGEKI ++ F P R R+LGLGDI L E
Sbjct: 245 IVTKLDSDARAGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGDIMTLAE 304
Query: 305 KFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEV 364
K ++ E + ++R + GK L+D+ Q+ + K+G I +MIPGL ++ +
Sbjct: 305 KAADVIDEKQ-VRGSMQRMMAGKMDLEDLMRQMSQISKLGSFSGIAKMIPGLN-NISENQ 362
Query: 365 ISVGEERLRKFKVIMDSMTEEELMNPDIINY--SRIKRIARGSGTSVKDVKELLNQYNQM 422
I E +++ + +++ SMT +E +P + SR R+ +GSG S ++ +LL Q+
Sbjct: 363 IGDAESKMKIWTILLSSMTLKERRDPRVFKKEPSRRIRVLKGSGRSPDELNKLLKQWEVS 422
Query: 423 KKFFKSMNK 431
+ + K
Sbjct: 423 RDKMAELGK 431
>sp|Q9ZDZ0|SR54_RICPR SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|7440084|pir||A71728 signal recognition particle
protein (ffh) RP173 - Rickettsia prowazekii
>gi|3860739|emb|CAA14640.1| (AJ235270) SIGNAL
RECOGNITION PARTICLE PROTEIN (ffh) [Rickettsia
prowazekii]
Length = 449
Score = 243 bits (615), Expect = 2e-63
Identities = 150/440 (34%), Positives = 240/440 (54%), Gaps = 10/440 (2%)
Query: 5 SLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEK 64
+L + L+ K+ +G + E + +RD++ AL+++DV + ++ +E++++AL ++
Sbjct: 4 TLTQNLTKIFDKLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIEEVKQKALGQE 63
Query: 65 PPAGISKKEHIIKIVYEELTKFLGT--EAKPIEIKEKPTI-LLMVGVQGSGKTTTVAKLA 121
+S + IIKI++EE+ L + + + KP + LL+VG+QG GKTT KLA
Sbjct: 64 VIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASGKLA 123
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+ + KV +V DT+RP A QL + + +I+ + + + K + +
Sbjct: 124 LRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAIGEAQIS 183
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
D++I DTAGR + + ++EE I + P E +LVID GQ A A F E I
Sbjct: 184 AYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVITAKTFSEKLEI 243
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
+I++++D KGG ALS T PIKF+ +GEK+ DLE F+ R SR+L +GDI
Sbjct: 244 SGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRILDMGDIIS 303
Query: 302 LLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLP 361
++K + E E+ + GKF L D Q+ +++KMG IL M+PG G +
Sbjct: 304 FVKKAASIVDREE-AEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSG-KIF 361
Query: 362 DEV--ISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQY 419
D++ + + + + I+ SMT +E NPDIIN SR KRIA G+G +V+ V LL QY
Sbjct: 362 DQIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINASRRKRIAAGAGMTVQKVNILLKQY 421
Query: 420 NQMKKFFK---SMNKRQLLR 436
Q+ K MN + LLR
Sbjct: 422 KQISAVMKKTSKMNPKNLLR 441
>sp|P47294|SR54_MYCGE SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|1361849|pir||C64205 signal recognition particle
protein - Mycoplasma genitalium
>gi|1045721|gb|AAC71264.1| (U39684) signal recognition
particle protein (ffh) [Mycoplasma genitalium]
Length = 446
Score = 242 bits (612), Expect = 5e-63
Identities = 144/429 (33%), Positives = 242/429 (55%), Gaps = 7/429 (1%)
Query: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
L + ++K A ++ E V+ V+++I+ AL+ ADVN+ +V K I+ + + +
Sbjct: 6 LSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTI 65
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQ 125
G ++ ++K + EL L + + K +P ++MVG+QGSGKTTT KLA +
Sbjct: 66 EPGQDLQKSLLKTIKTELINILSQPNQELNEK-RPLKIMMVGLQGSGKTTTCGKLAYWLE 124
Query: 126 KR-GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVD 184
K+ K +V D +RP A QL+ L + VF + K K + FK
Sbjct: 125 KKYKQKTMLVGLDIYRPAAIEQLETLSQQTN-SVFFAQGTQPVAKTTKAALSAFKTAKCQ 183
Query: 185 LIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSI 244
II DTAGR + + L++E+ + NE+ P E+I+V+DG GQ+ N A F + +
Sbjct: 184 TIICDTAGRLQTNETLMDELVSVKNELNPDEIIMVVDGLSGQEIINVAQTFHKRLKLTGF 243
Query: 245 IVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLE 304
I++KLDS A+ G ALS + PIK IG EK+D LE F P R +R+LGLGD+ L+E
Sbjct: 244 IISKLDSDARAGAALSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGDVMSLVE 303
Query: 305 KFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEV 364
K +++ + + T+ + FL GK L+D+ ++ M KMG + +++M+P +S+ +E
Sbjct: 304 KAEQVFDKKDLTKTISKMFL-GKMDLEDLLIYMQQMHKMGSVSSLIKMLPA-NFSVSEEN 361
Query: 365 ISVGEERLRKFKVIMDSMTEEELMNPDIINY--SRIKRIARGSGTSVKDVKELLNQYNQM 422
+ E ++ +KV+++SMT EE +P +IN +R +RI +GSG + ++ +L+ ++N+M
Sbjct: 362 AELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKM 421
Query: 423 KKFFKSMNK 431
+ M K
Sbjct: 422 QLKATEMGK 430
>sp|P56005|SR54_HELPY SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
>gi|7440077|pir||H64663 signal recognition particle
protein - Helicobacter pylori (strain 26695)
>gi|2314305|gb|AAD08194.1| (AE000621) signal recognition
particle protein (ffh) [Helicobacter pylori 26695]
Length = 448
Score = 242 bits (612), Expect = 5e-63
Identities = 148/438 (33%), Positives = 244/438 (54%), Gaps = 17/438 (3%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ +L NAL KI DE + + ++++ L++ DV+ ++ +L K+++ +
Sbjct: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTILLMVGVQGSGKTTTVAK 119
GI K++ + + + L + L + + PT++LM G+QGSGKTTT AK
Sbjct: 59 LN----GIGKQQ-FLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAK 113
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LA + + + KV + D R A QLK L + +EVF + N K ++A ++ K
Sbjct: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEEN-KSVKEIASNALKRAK 172
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEAT 239
D+++VD+AGR +K+L++E++ + + PHEV+ V D GQ A F E
Sbjct: 173 EAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEI 232
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDI 299
+ ++++K DS +KGG AL G P++FIG+GEKI DL+ F P R V RL+G GDI
Sbjct: 233 GVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGDI 292
Query: 300 QGLLEKFKELEKEVEFTEEDLERFL-KGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG- 357
L EK + E +DL + L KG+FT D Q+E ++K+G + ++ MIPGLG
Sbjct: 293 VSLAEKTASVLNPNE--AKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGN 350
Query: 358 --YSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYSRIKRIARGSGTSVKDVKEL 415
+L D + E ++K K +++SMT++E NP+I+N SR KRIA GSG V ++ +
Sbjct: 351 MASALKDTDLESSLE-VKKIKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRI 409
Query: 416 LNQYNQMKKFFKSMNKRQ 433
+ +++Q K K + ++
Sbjct: 410 IKRFDQASKMAKRLTNKK 427
>pir||S07178 hypothetical protein, 48K (rpsP 5' region) - Escherichia coli
>gi|43142|emb|CAA25957.1| (X01818) unidentified reading
frame (48-K polypeptide) (aa 1-368) [Escherichia coli]
Length = 368
Score = 236 bits (596), Expect = 4e-61
Identities = 132/359 (36%), Positives = 212/359 (58%), Gaps = 10/359 (2%)
Query: 87 LGTEAKPIEIK-EKPTILLMVGVQGSGKTTTVAKLARHF-QKRGYKVGVVCSDTWRPGAY 144
+G E + + + + P ++LM G+QG+GKTT+V KL + +K KV VV +D +RP A
Sbjct: 1 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 60
Query: 145 HQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEM 204
QL+ L + ++ F + + + ++ K K D+++VDTAGR ++ +++E+
Sbjct: 61 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 120
Query: 205 RMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAA 264
+ + I P E + V+D GQ A N A AF EA P+ +++TK+D A+GG ALS
Sbjct: 121 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 180
Query: 265 TGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEED--LER 322
TG PIKF+G GEK + LEPF P R SR+LG+GD+ L+E ++E +V+ + + +
Sbjct: 181 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIE---DIESKVDRAQAEKLASK 237
Query: 323 FLKGK-FTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEER-LRKFKVIMD 380
KG F L D QL M+ MG + ++ +PG+G +PD V S +++ L + + I++
Sbjct: 238 LKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVKSQMDDKVLVRMEAIIN 296
Query: 381 SMTEEELMNPDIINYSRIKRIARGSGTSVKDVKELLNQYNQMKKFFKSMNKRQLLRLAR 439
SMT +E P+II SR +RIA G G V+DV LL Q++ M++ K M K + ++ R
Sbjct: 297 SMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMR 355
>dbj|BAA16495.1| (D90888) SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
(P48). [Escherichia coli]
Length = 373
Score = 233 bits (587), Expect = 4e-60
Identities = 129/343 (37%), Positives = 204/343 (58%), Gaps = 9/343 (2%)
Query: 102 ILLMVGVQGSGKTTTVAKLARHF-QKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG 160
++LM G+QG+GKTT+V KL + +K KV VV +D +RP A QL+ L + ++ F
Sbjct: 22 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 81
Query: 161 DPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVI 220
+ + + ++ K K D+++VDTAGR ++ +++E++ + I P E + V+
Sbjct: 82 SDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVV 141
Query: 221 DGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDD 280
D GQ A N A AF EA P+ +++TK+D A+GG ALS TG PIKF+G GEK +
Sbjct: 142 DAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEA 201
Query: 281 LEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEED--LERFLKGK-FTLKDMYAQL 337
LEPF P R SR+LG+GD+ L+E ++E +V+ + + + KG F L D QL
Sbjct: 202 LEPFHPDRIASRILGMGDVLSLIE---DIESKVDRAQAEKLASKLKKGDGFDLNDFLEQL 258
Query: 338 EAMRKMGPLKQILRMIPGLGYSLPDEVISVGEER-LRKFKVIMDSMTEEELMNPDIINYS 396
M+ MG + ++ +PG+G +PD V S +++ L + + I++SMT +E P+II S
Sbjct: 259 RQMKNMGGMASLMGKLPGMG-QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS 317
Query: 397 RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSMNKRQLLRLAR 439
R +RIA G G V+DV LL Q++ M++ K M K + ++ R
Sbjct: 318 RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMR 360
>pir||A75168 signal recognition particle receptor (dpa) PAB2025 - Pyrococcus
abyssi (strain Orsay) >gi|5457934|emb|CAB49424.1|
(AJ248284) signal recognition particle receptor (dpa)
[Pyrococcus abyssi]
Length = 322
Score = 194 bits (488), Expect = 2e-48
Identities = 106/278 (38%), Positives = 163/278 (58%), Gaps = 5/278 (1%)
Query: 23 VDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEE 82
+ E V+E + D++ L++ADV + +V L ++I+ + + +K G K++ I V E
Sbjct: 41 IKEKDVEEALEDLELELLEADVALEVVDALKEKIKEKLVGKKVRIGTDKEKIIEDAVREA 100
Query: 83 LTKFLGTEAK-----PIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSD 137
+ + L K I EKP ++L VG GSGKTTT+AKLA +K G+ V + SD
Sbjct: 101 ILEILTPPRKIDLLEEIRKSEKPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASD 160
Query: 138 TWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEE 197
T+R GA QL++ ++V D +A + ++H KA+G+D++++DTAGR +
Sbjct: 161 TFRAGAIEQLEEHAKRVGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETN 220
Query: 198 KDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGG 257
++L++EMR I+ KP+ V+ V D G QA F +A I ++I+TKLD+ A+GG
Sbjct: 221 RNLMDEMRKIARVTKPNLVVFVGDSLAGNAIVEQARQFNDAVKIDAVILTKLDADARGGA 280
Query: 258 ALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
ALS T API F+G G+ DDL PFD FV R+LG
Sbjct: 281 ALSISHVTNAPILFVGIGQGYDDLMPFDEKWFVERILG 318
>pir||E71047 probable signal recognition particle protein - Pyrococcus
horikoshii >gi|3258098|dbj|BAA30781.1| (AP000006) 326aa
long hypothetical signal recognition particle protein
[Pyrococcus horikoshii]
Length = 326
Score = 190 bits (477), Expect = 3e-47
Identities = 103/278 (37%), Positives = 164/278 (58%), Gaps = 5/278 (1%)
Query: 23 VDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEE 82
+ E ++E + D++ L++ADV + +V +L I+R + +K G +K++ I + V +
Sbjct: 45 IKEKDIEEALEDLELELLEADVALEVVDELKDRIKRNLVGKKVRIGTNKEKIIEEAVRKA 104
Query: 83 LTKFLGTEAK-----PIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSD 137
+ + L E K I+ EKP ++L VG GSGKTTT+AKLA +K G+ V + SD
Sbjct: 105 VLEILTPEKKMDLLEEIKKAEKPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASD 164
Query: 138 TWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEE 197
T+R GA QL++ ++V D +A + ++H KA+G+D++++DTAGR +
Sbjct: 165 TFRAGAIEQLEEHAKKVGVKVIKHKYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETN 224
Query: 198 KDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGG 257
++L++EM+ I+ KP+ VI V D G QA F +A I +I+TKLD+ A+GG
Sbjct: 225 RNLMDEMKKIARVTKPNLVIFVGDSLAGNAIVEQARQFNQAVKIDGVILTKLDADARGGA 284
Query: 258 ALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
ALS API F+G G+ +DL PFD FV ++LG
Sbjct: 285 ALSISHVINAPILFVGIGQGYEDLIPFDERWFVEKILG 322
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 188 bits (473), Expect = 9e-47
Identities = 107/292 (36%), Positives = 170/292 (57%), Gaps = 1/292 (0%)
Query: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
L L A+ ++ G + E +K +R+I+RAL+ ADVN+ + + ++ AL ++
Sbjct: 4 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV 63
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQ 125
++ E I+ VYE L + LG EA+ +K++ + +VG+QGSGKTTT AKLA +++
Sbjct: 64 LESLTPAEVILATVYEALKEALGGEARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYK 122
Query: 126 KRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDL 185
+G + +V +DT RP A QL+ L + + V + + + + E + + DL
Sbjct: 123 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL 182
Query: 186 IIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSII 245
I+VDTAGR + ++ L+ E+ + + P EV+LV+D GQ+A + A AF E + ++
Sbjct: 183 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLV 242
Query: 246 VTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLG 297
+TKLD A+GG ALSA TG PI F G EK + LEPF P R R+LG+G
Sbjct: 243 LTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 294
>gb|AAB58327.1| (U95207) signal recognition particle receptor alpha subunit
[Thermococcus zilligii]
Length = 329
Score = 186 bits (468), Expect = 4e-46
Identities = 110/301 (36%), Positives = 172/301 (56%), Gaps = 16/301 (5%)
Query: 10 LSNALKKIARAGSVDEAL--------VKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+S KK +AG +D L V E + +++ L++ADV + +V +L ++I+ + +
Sbjct: 28 ISGEEKKEEKAGLLDRLLQVEIKEKDVDEAIGELELELLEADVALEVVDELREKIKGKLV 87
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-------KEKPTILLMVGVQGSGKT 114
+K G K + I + V E + + L T + I++ +EKP ++ VG G GKT
Sbjct: 88 GKKVRIGSDKGKIIEEAVKEAVLEVL-TPPRRIDLIEEMRKKEEKPFVIAFVGFNGGGKT 146
Query: 115 TTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEG 174
TT+AKLA +K+G+ V V SDT+R GA QL++ ++V D +A +
Sbjct: 147 TTIAKLAHWLKKQGFSVVVAASDTFRAGAIEQLEEHAKRVGVKVIKHSYGADPAAVAYDA 206
Query: 175 VEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALA 234
++H KA+G+D++++DTAGR++ ++L++EM+ I KP VI V D G QA
Sbjct: 207 IQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTKPDLVIFVGDSLAGNSIIEQARQ 266
Query: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
F EA I +I+TKLD+ A+GG ALS A GAPI F+G G+ DDL+PFD FV +
Sbjct: 267 FNEAVRIDGVILTKLDADARGGAALSISHAIGAPILFVGVGQGYDDLKPFDERWFVDLIF 326
Query: 295 G 295
G
Sbjct: 327 G 327
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus >gi|5822519|pdb|3NG1|A Chain
A, N And Gtpase Domains Of The Signal Sequence
Recognition Protein Ffh From Thermus Aquaticus
>gi|5822520|pdb|3NG1|B Chain B, N And Gtpase Domains Of
The Signal Sequence Recognition Protein Ffh From Thermus
Aquaticus
Length = 294
Score = 186 bits (468), Expect = 4e-46
Identities = 106/295 (35%), Positives = 170/295 (56%), Gaps = 1/295 (0%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ L L A+ ++ G + E +K +R+I+RAL+ ADVN+ + + ++ AL
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLA 121
++ ++ E I+ VYE L + LG EA+ +K++ + +VG+QGSGKTTT AKLA
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDR-NLWFLVGLQGSGKTTTAAKLA 119
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+++ +G + +V +DT RP A QL+ L + + V + + + + E + +
Sbjct: 120 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 179
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
DLI+VDTAGR + ++ L+ E+ + + P EV+LV+D GQ+A + A AF E +
Sbjct: 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 239
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGL 296
+++TKLD A+GG ALSA TG PI F G EK + LEPF P R R+LG+
Sbjct: 240 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM 294
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 186 bits (467), Expect = 5e-46
Identities = 106/291 (36%), Positives = 169/291 (57%), Gaps = 1/291 (0%)
Query: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
L L A+ ++ G + E +K +R+I+RAL+ ADVN+ + + ++ AL ++
Sbjct: 4 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV 63
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQ 125
++ E I+ VYE L + LG EA+ +K++ + +VG+QGSGKTTT AKLA +++
Sbjct: 64 LESLTPAEVILATVYEALKEALGGEARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYK 122
Query: 126 KRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDL 185
+G + +V +DT RP A QL+ L + + V + + + + E + + DL
Sbjct: 123 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL 182
Query: 186 IIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSII 245
I+VDTAGR + ++ L+ E+ + + P EV+LV+D GQ+A + A AF E + ++
Sbjct: 183 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLV 242
Query: 246 VTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGL 296
+TKLD A+GG ALSA TG PI F G EK + LEPF P R R+LG+
Sbjct: 243 LTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM 293
>sp|O67066|FTSY_AQUAE CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7443750|pir||G70379 cell
division protein FtsY - Aquifex aeolicus
>gi|2983449|gb|AAC07030.1| (AE000714) cell division
protein FtsY [Aquifex aeolicus]
Length = 461
Score = 182 bits (456), Expect = 9e-45
Identities = 112/305 (36%), Positives = 169/305 (54%), Gaps = 20/305 (6%)
Query: 2 VLDSLGKALSNALKKIA-----RAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEI 56
+LD L + L + + R VDE E +++ L++ADV V+ ++LT+++
Sbjct: 164 ILDKLRRGLQKTKEAVEFGVLFRGRKVDE----EFFEELEEMLVKADVGVKTAVELTEKL 219
Query: 57 QRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKP-TILLMVGVQGSGKTT 115
++ A+ + I + E I +++ +EL + L ++I EK +LL VGV GSGKTT
Sbjct: 220 RKEAIRKN----IKEGEKIKELLKKELKELLKNCQGELKIPEKVGAVLLFVGVNGSGKTT 275
Query: 116 TVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGV 175
T+ KLA +++G KV +V DT+R A QL+ +++ D + EG+
Sbjct: 276 TIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKKEEGSDPGAVVYEGM 335
Query: 176 EHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAY 229
+ K +G ++++VDTAGR ++ LI E+R I I+ P E +LVID T GQ A
Sbjct: 336 KKAKEEGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSETLLVIDATTGQNAI 395
Query: 230 NQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARF 289
QA FKEA I I+VTKLD SAKGG ++ PIK +G GE IDDL+PFD +
Sbjct: 396 QQAKVFKEAVDITGIVVTKLDGSAKGGAVVAICRELKIPIKLVGVGEGIDDLQPFDADAY 455
Query: 290 VSRLL 294
V LL
Sbjct: 456 VEALL 460
>sp|Q57739|Y291_METJA PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN MJ0291
>gi|2129282|pir||D64336 signal recognition particle
protein - Methanococcus jannaschii
>gi|1591013|gb|AAB98276.1| (U67484) signal recognition
particle, receptor [Methanococcus jannaschii]
Length = 409
Score = 175 bits (439), Expect = 9e-43
Identities = 110/317 (34%), Positives = 171/317 (53%), Gaps = 22/317 (6%)
Query: 10 LSNALKKIARAGSVD-EALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAG 68
L+ A+KK+ + V E +++V+ +++ AL++ADV + +V KL + I+ + K
Sbjct: 104 LTRAIKKVLKKEVVILEEDIEDVLEELEIALLEADVALEVVEKLIENIKNELVGRKISPD 163
Query: 69 ISKKEHIIKIVYEELTKFLGTEAKPIE--IKE-----KPTILLMVGVQGSGKTTTVAKLA 121
+ +E I V + L E IE IK+ KPT+++ VG+ G+GKTTT+AKLA
Sbjct: 164 DNVEEITINAVKNAIKNILSQEKIDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLA 223
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+++GY V + DT+R GA QL+Q ++V D+ + + ++H KA+
Sbjct: 224 YKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKVIKHKPGADSAAVIYDAIQHAKAR 283
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
G+D+++ DTAGR +L+EE++ + KP VI V D G A QA F A I
Sbjct: 284 GIDVVLADTAGRQATNVNLMEEIKKVVRVTKPDLVIFVGDALTGNDAVYQAEEFNRAVNI 343
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQG 301
II+TK+D+ AKGG ALS A G PI ++G G++ DL FD V +L G
Sbjct: 344 DGIILTKVDADAKGGAALSIGYAIGKPILYLGVGQRYQDLIEFDADWMVRKLFG------ 397
Query: 302 LLEKFKELEKEVEFTEE 318
E+E EF+ E
Sbjct: 398 --------EEEFEFSTE 406
>dbj|BAB06205.1| (AP001515) signal recognition particle (docking protein) [Bacillus
halodurans]
Length = 330
Score = 174 bits (436), Expect = 2e-42
Identities = 105/278 (37%), Positives = 162/278 (57%), Gaps = 17/278 (6%)
Query: 22 SVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYE 81
SVDE +E ++ LI ADV V V+ L +E++ +E I + I I+ E
Sbjct: 46 SVDEDFFEE----LEEILIGADVGVTTVMDLVEELK----DEVRRQNIKDSKDIQPIISE 97
Query: 82 ELTKFLGTEAKPIEIKEKP---TILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDT 138
+L + L E E+ +P +++L+VGV G GKTT++ KLA ++++G KV + DT
Sbjct: 98 KLAELLEKEGGETEVNLQPAGLSVILVVGVNGVGKTTSIGKLAHMYKQQGKKVILAAGDT 157
Query: 139 WRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEK 198
+R GA QL+ + ++V D + + ++ K++ D++I DTAGR + +
Sbjct: 158 FRAGAIEQLEVWGERAGVDVIKQSEGSDPAAVMFDAIQAAKSREADILICDTAGRLQNKV 217
Query: 199 DLIEEM----RMISNEIK--PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSS 252
+L++E+ R+IS EI PHEV++ +D T GQ A +QA FKE T + II+TKLD +
Sbjct: 218 NLMKELEKVKRVISREIPGAPHEVLIALDATTGQNAMSQAKTFKETTDVTGIILTKLDGT 277
Query: 253 AKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFV 290
AKGG L+ P+KF+G GEKIDDL+PFD +FV
Sbjct: 278 AKGGIVLAIRHELDIPVKFVGLGEKIDDLQPFDSEQFV 315
>pir||B82360 cell division protein FtsY VC0147 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654548|gb|AAF93324.1|
(AE004104) cell division protein FtsY [Vibrio cholerae]
Length = 391
Score = 173 bits (435), Expect = 3e-42
Identities = 98/279 (35%), Positives = 153/279 (54%), Gaps = 16/279 (5%)
Query: 23 VDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEE 82
+D+ L +E+ + A + D +++ LT R+ L + E + ++ EE
Sbjct: 116 IDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDG--------EALYGLLKEE 167
Query: 83 LTKFLGTEAKP--IEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWR 140
+ + L +P I+ ++KP ++LMVGV G GKTTT+ KLA+ FQ +G KV + DT+R
Sbjct: 168 MAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFR 227
Query: 141 PGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDL 200
A QL+ + + V D+ + + +E KA+G+D++I DTAGR + + +L
Sbjct: 228 AAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNL 287
Query: 201 IEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAK 254
+EE+R I +K PHE++L +D GQ A +QA F + PI I +TKLD +AK
Sbjct: 288 MEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPITGITLTKLDGTAK 347
Query: 255 GGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
GG + PI++IG GEKIDDL PF F+ L
Sbjct: 348 GGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDAL 386
>pir||A72362 cell division protein FtsY - Thermotoga maritima (strain MSB8)
>gi|4981086|gb|AAD35655.1|AE001731_12 (AE001731) cell
division protein FtsY [Thermotoga maritima]
Length = 294
Score = 171 bits (429), Expect = 1e-41
Identities = 109/271 (40%), Positives = 147/271 (54%), Gaps = 18/271 (6%)
Query: 30 EVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGT 89
E +++ LIQADV V + T+ I R E+ A S KE I++I L
Sbjct: 34 ETREELEELLIQADVGV----ETTEYILERLEEKDGDALESLKEIILEI--------LNF 81
Query: 90 EAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQ 149
+ K E P ++++VGV G+GKTT+ KLA+ F G V + +DT+R A QLK
Sbjct: 82 DTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKI 141
Query: 150 LLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISN 209
+ V D +A + V H A+ D++I+DTAGR +K+L+EE+R +
Sbjct: 142 WGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHR 201
Query: 210 EIK------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVA 263
+K PHE +LVID T GQ QA FKEA + II+TKLD +AKGG L+
Sbjct: 202 VVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIAR 261
Query: 264 ATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
G PIKFIG GEK +DL PFDP FV LL
Sbjct: 262 ELGIPIKFIGVGEKAEDLRPFDPEAFVEVLL 292
>pir||G69081 signal recognition particle protein (docking protein) -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622733|gb|AAB86081.1| (AE000920) signal recognition
particle protein (docking protein) [Methanobacterium
thermoautotrophicum]
Length = 358
Score = 169 bits (425), Expect = 4e-41
Identities = 91/278 (32%), Positives = 155/278 (55%), Gaps = 3/278 (1%)
Query: 19 RAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKI 78
R + E V +V+ D++ AL+++DV + + K+T E++ + K E+ ++
Sbjct: 79 REKRITEKDVDDVLWDLEMALLESDVALEVAEKITTELKEELVGRKVKRSTEISEYTMEA 138
Query: 79 VYEELTKFL---GTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVC 135
+ + + L G + + K+KP +++ VG+ G+GKTTT+AK+AR+F K+G + +
Sbjct: 139 LKKAVKDVLSVDGVDLPQLVEKKKPLVIMFVGINGTGKTTTIAKVARYFMKKGLEPVIAA 198
Query: 136 SDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHK 195
+DT+R GA Q+ Q D +++ D +A + V H KA+G D++++DTAGR +
Sbjct: 199 ADTFRAGAIEQIGQHADKLGVKLISHRKGADPAAVAFDAVSHAKAQGKDVVLIDTAGRMQ 258
Query: 196 EEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKG 255
+L++EM I ++P ++ V D G A QA F EA I ++I+TK D+ A+G
Sbjct: 259 TNVNLMDEMAKIKRVVRPDLIVFVGDALTGNDAIEQAARFDEAVGIDAVILTKADADARG 318
Query: 256 GGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
G ALS PI F+G G+ DD+ F P V +L
Sbjct: 319 GAALSIGYMIKRPIIFMGIGQGYDDIMEFKPEWMVEQL 356
>sp|P10121|FTSY_ECOLI CELL DIVISION PROTEIN FTSY >gi|72939|pir||CEECFY cell division
protein ftsY - Escherichia coli
>gi|41498|emb|CAA27984.1| (X04398) ORF 1 (AA 1-497); 48
kD (put. ftsY) [Escherichia coli]
>gi|466600|gb|AAB18439.1| (U00039) CG Site No. 18295
[Escherichia coli] >gi|1789874|gb|AAC76489.1| (AE000422)
cell division membrane protein [Escherichia coli K12]
Length = 497
Score = 168 bits (420), Expect = 2e-40
Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 15/296 (5%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
L + + R +D+ L +E+ + A + + +++ LT+ R+ L +
Sbjct: 210 LGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDA----- 264
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAKLARHFQKRG 128
E + ++ EE+ + L +P+ ++ K P ++LMVGV G GKTTT+ KLAR F+++G
Sbjct: 265 ---EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG 321
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
V + DT+R A QL+ +I V D+ + + ++ KA+ +D++I
Sbjct: 322 KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIA 381
Query: 189 DTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPIG 242
DTAGR + + L+EE++ I +K PHEV+L ID + GQ A +QA F EA +
Sbjct: 382 DTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 441
Query: 243 SIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
I +TKLD +AKGG S G PI++IG GE+I+DL PF F+ L D
Sbjct: 442 GITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 167 bits (418), Expect = 3e-40
Identities = 97/291 (33%), Positives = 157/291 (53%), Gaps = 15/291 (5%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
L + + R +D+ L +E+ + A + + +++ LT+ R+ L +
Sbjct: 10 LGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDA----- 64
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAKLARHFQKRG 128
E + ++ EE+ + L +P+ ++ K P ++LMVGV G GKTTT+ KLAR F+++G
Sbjct: 65 ---EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG 121
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
V + DT+R A QL+ +I V D+ + + ++ KA+ +D++I
Sbjct: 122 KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIA 181
Query: 189 DTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPIG 242
DTAGR + + L+EE++ I +K PHEV+L ID + GQ A +QA F EA +
Sbjct: 182 DTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 241
Query: 243 SIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
I +TKLD +AKGG S G PI++IG GE+I+DL PF F+ L
Sbjct: 242 GITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEAL 292
>pir||E83598 signal recognition particle receptor FtsY PA0373 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946225|gb|AAG03762.1|AE004475_4 (AE004475) signal
recognition particle receptor FtsY [Pseudomonas
aeruginosa]
Length = 455
Score = 164 bits (412), Expect = 1e-39
Identities = 99/276 (35%), Positives = 149/276 (53%), Gaps = 20/276 (7%)
Query: 30 EVVRDIQRALIQADVNVR----LVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTK 85
+++ DI+ L+ ADV V +V LTK + R+ L + + K + EEL
Sbjct: 181 DLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGA--------LYKALQEELAS 232
Query: 86 FLGTEAKP--IEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGA 143
L +P +++ +P ++L+VGV G GKTTT+ KLA+ Q G KV + DT+R A
Sbjct: 233 LLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAA 292
Query: 144 YHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEE 203
QL+ + I V D+ + + V+ KA+G+D++I DTAGR + +L+EE
Sbjct: 293 VEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEE 352
Query: 204 MRMIS------NEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGG 257
++ + +E PHEV+LV+D GQ A NQA F A + + +TKLD +AKGG
Sbjct: 353 LKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGV 412
Query: 258 ALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
+ G PI++IG GE IDDL F+ FV L
Sbjct: 413 IFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQAL 448
>sp|O30391|FTSY_NEIMC CELL DIVISION PROTEIN FTSY HOMOLOG >gi|11277903|pir||T44429
probable transcription regulator [imported] - Neisseria
meningitidis >gi|2580590|gb|AAB97510.1| (AF003940)
putative transcriptional regulator [Neisseria
meningitidis]
Length = 421
Score = 162 bits (405), Expect = 9e-39
Identities = 94/293 (32%), Positives = 162/293 (55%), Gaps = 17/293 (5%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
++ +L + G +DE L +E ++ LI +D+++ L K+++ R + G+
Sbjct: 137 MAKSLAGVFGGGQIDEDLYEE----LETVLITSDMDMEATEYLMKDVRDRVSLK----GL 188
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKE--KPTILLMVGVQGSGKTTTVAKLARHFQKR 127
+ + E L + KP+ + E +P ++++ G+ G+GKTT++ KLA++FQ +
Sbjct: 189 KDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQ 248
Query: 128 GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLII 187
G V + DT+R A QL+ + ++ V D+ + + V+ KA+G+D+++
Sbjct: 249 GKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAAKARGIDIVL 307
Query: 188 VDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPI 241
DTAGR + L+EE++ + ++ PHE+I+V+D IGQ A NQ AF +A +
Sbjct: 308 ADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGL 367
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
+IVTKLD +AKGG + + P+++IG GE IDDL PFD FV LL
Sbjct: 368 TGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALL 420
>sp|P44870|FTSY_HAEIN CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1073930|pir||G64091 cell
division protein ftsY - Haemophilus influenzae (strain
Rd KW20) >gi|1573776|gb|AAC22426.1| (U32760) cell
division protein (ftsY) [Haemophilus influenzae Rd]
Length = 414
Score = 161 bits (404), Expect = 1e-38
Identities = 93/272 (34%), Positives = 148/272 (54%), Gaps = 12/272 (4%)
Query: 30 EVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGT 89
E+ +++ L+ AD+ V K+ K + A ++ + E + + + E+ L
Sbjct: 141 ELFEELEEQLLIADIGVPTTSKIIKNLTEHASRKE----LQDAELLYQQLKVEMADILEP 196
Query: 90 EAKPIEIK--EKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQL 147
A+P+EI +KP ++LMVGV G GKTTT+ KLAR FQ G V + DT+R A QL
Sbjct: 197 VAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQL 256
Query: 148 KQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMI 207
+ + HI V D+ + + ++ A+ +D++I DTAGR + + +L++E++ I
Sbjct: 257 QVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKI 316
Query: 208 ------SNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSA 261
+E PHE++L +D GQ A +QA F EA + I +TKLD +AKGG +
Sbjct: 317 VRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAI 376
Query: 262 VAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
PI++IG GEKI+DL F+ F+ L
Sbjct: 377 ADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408
>sp|P57011|FTSY_NEIMB CELL DIVISION PROTEIN FTSY HOMOLOG >gi|11277902|pir||H81243 signal
recognition particle protein NMB0045 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7225266|gb|AAF40516.1| (AE002363) signal recognition
particle protein [Neisseria meningitidis MC58]
Length = 421
Score = 161 bits (404), Expect = 1e-38
Identities = 94/293 (32%), Positives = 161/293 (54%), Gaps = 17/293 (5%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
++ +L + G +DE L +E ++ LI +D+ + L K+++ R + G+
Sbjct: 137 MAKSLAGVFGGGQIDEDLYEE----LETVLITSDMGMEATEYLMKDVRDRVSLK----GL 188
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKE--KPTILLMVGVQGSGKTTTVAKLARHFQKR 127
+ + E L + KP+ + E +P ++++ G+ G+GKTT++ KLA++FQ +
Sbjct: 189 KDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQ 248
Query: 128 GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLII 187
G V + DT+R A QL+ + ++ V D+ + + V+ KA+G+D+++
Sbjct: 249 GKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAAKARGIDIVL 307
Query: 188 VDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPI 241
DTAGR + L+EE++ + ++ PHE+I+V+D IGQ A NQ AF +A +
Sbjct: 308 ADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGL 367
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
+IVTKLD +AKGG + + P+++IG GE IDDL PFD FV LL
Sbjct: 368 TGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALL 420
>gb|AAF42961.1|AF090335_1 (AF090335) FtsY [Caulobacter crescentus]
Length = 313
Score = 161 bits (404), Expect = 1e-38
Identities = 96/280 (34%), Positives = 154/280 (54%), Gaps = 9/280 (3%)
Query: 25 EALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELT 84
+AL +E + ++ LI+AD+ ++ ++T E +A K KE + +++ EL
Sbjct: 37 KALDQEQLDALEEMLIEADLGPQIAARIT-EAFGKARFGKSSTDDEVKEALAELIAAELA 95
Query: 85 KFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAY 144
G + P+ +P ++L +GV GSGKTTT+ K+A ++G +V + DT+R A
Sbjct: 96 DRQG-DFDPLN-GPRPYVVLFIGVNGSGKTTTLGKIAADLTEKGARVLIAAGDTFRAAAV 153
Query: 145 HQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEM 204
QLK D + P DA LA E VE KA+ D++++DTAGR + ++ L++E+
Sbjct: 154 EQLKVWADRAGADFMSKPTGSDAAALAYEAVERAKAEHYDVVLIDTAGRLQNKQGLMDEL 213
Query: 205 RMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGA 258
+K PHE +LV+D T+G+ A Q F + I++TKLD +A+GG
Sbjct: 214 LKGIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIFGSQVGVSGIVMTKLDGTARGGVL 273
Query: 259 LSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+ A+ +PIK IG GE ++DL+PFD F L+GL D
Sbjct: 274 VPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVGLKD 313
>sp|P57010|FTSY_NEIMA CELL DIVISION PROTEIN FTSY HOMOLOG >gi|11277901|pir||F82024
probable signal recognition particle protein NMA0291
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7379052|emb|CAB83598.1| (AL162752) probable
signal recognition particle protein [Neisseria
meningitidis Z2491]
Length = 421
Score = 161 bits (404), Expect = 1e-38
Identities = 94/293 (32%), Positives = 161/293 (54%), Gaps = 17/293 (5%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
++ +L + G +DE L +E ++ LI +D+ + L K+++ R + G+
Sbjct: 137 MAKSLAGVFGGGQIDEDLYEE----LETVLITSDMGMEATEYLMKDVRDRVSLK----GL 188
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKE--KPTILLMVGVQGSGKTTTVAKLARHFQKR 127
+ + E L + KP+ + E +P ++++ G+ G+GKTT++ KLA++FQ +
Sbjct: 189 KDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQ 248
Query: 128 GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLII 187
G V + DT+R A QL+ + ++ V D+ + + V+ KA+G+D+++
Sbjct: 249 GKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAAKARGIDIVL 307
Query: 188 VDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPI 241
DTAGR + L+EE++ + ++ PHE+I+V+D IGQ A NQ AF +A +
Sbjct: 308 ADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGL 367
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
+IVTKLD +AKGG + + P+++IG GE IDDL PFD FV LL
Sbjct: 368 TGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALL 420
>pir||B72708 probable signal recognition particle protein APE1081 - Aeropyrum
pernix (strain K1) >gi|5104751|dbj|BAA80066.1|
(AP000060) 312aa long hypothetical signal recognition
particle protein [Aeropyrum pernix]
Length = 312
Score = 161 bits (402), Expect = 2e-38
Identities = 107/309 (34%), Positives = 161/309 (51%), Gaps = 24/309 (7%)
Query: 6 LGKALSNALKKIARAGSVDEALVKE--------VVRDIQRALIQADVNVRLVLKLTKEIQ 57
L +AL+ A + IAR G VD KE V+ DI L+++DV L+ + I
Sbjct: 9 LREALNRASEHIAR-GIVDTLAYKELKPEDLEPVLDDILIDLVESDV----ALEAAESIV 63
Query: 58 RRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP-------IEIKEK----PTILLMV 106
E + + E + K+V + L K L T P E + + P ++L +
Sbjct: 64 AGVKEGLTGYRVRRGEPVEKVVRDALRKALLTLLDPGPRPDLAAEARRRCGGRPLVILFL 123
Query: 107 GVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKD 166
GV G+GKTTT+AK+A +K G + +DT+R GA QL + + + D
Sbjct: 124 GVNGTGKTTTIAKVAYMLRKAGVTPVIAAADTFRAGAQEQLAVHAEKLGVPIVRGRYGGD 183
Query: 167 AIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQ 226
+A + V+H +++G ++VDTAGR + +L+EE+R I +KP ILV+D G
Sbjct: 184 PASVAYDAVKHAESRGFCAVLVDTAGRMHVDSNLVEELRKIVRVVKPDYKILVVDSLTGN 243
Query: 227 QAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDP 286
A QA F EA + +IVTK+D+ KGG +S A PI +IGTG++ +DL PFDP
Sbjct: 244 DAVEQARLFDEAVGVDGVIVTKVDADPKGGTLVSVAHAIRKPILYIGTGQRYEDLRPFDP 303
Query: 287 ARFVSRLLG 295
+ V +LLG
Sbjct: 304 QKIVDQLLG 312
>sp|P73930|FTSY_SYNY3 CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7443749|pir||S75134 cell
division protein ftsY - Synechocystis sp. (strain PCC
6803) >gi|1653079|dbj|BAA17996.1| (D90910) cell division
protein FtsY [Synechocystis sp.]
Length = 504
Score = 158 bits (395), Expect = 1e-37
Identities = 106/295 (35%), Positives = 159/295 (52%), Gaps = 16/295 (5%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEK-PPAG 68
L N LK I G ++EA V+E I+ L+QADV V + +Q + EE PP
Sbjct: 214 LVNQLKSIVGQGPLNEAAVEE----IEAILLQADVGVEATDYIITTLQDKLREEALPPEQ 269
Query: 69 ISK--KEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQK 126
+ KE + I+ L E P E + L+ GV G+GKTTT+ KLA ++
Sbjct: 270 AIEFLKEILRSILDRPLLSLPSAEFAPEA--EGLNVWLLTGVNGAGKTTTIGKLAFMAKQ 327
Query: 127 RGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEK-DAIKLAKEGVEHFKAKGVDL 185
GY + +DT+R A Q+K + + V +P + D + +G+ +++ V+L
Sbjct: 328 SGYDCVIAAADTFRAAAVEQVKVWGERSGVPVIANPGQNTDPAAVVYDGISAAQSRNVNL 387
Query: 186 IIVDTAGRHKEEKDLIEEM---RMISNEIKPH---EVILVIDGTIGQQAYNQALAFKEAT 239
++VDTAGR + +K+L++E+ R I ++ P+ E +LV+D T+GQ QA F EA
Sbjct: 388 LLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNATVESLLVLDATLGQNGLRQAEVFAEAA 447
Query: 240 PIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
+ +++TKLD SAKGG AL+ PI+FIG GE I+DL PF FV LL
Sbjct: 448 KLSGVVLTKLDGSAKGGVALAVAQQLNLPIRFIGAGEGIEDLRPFSSYEFVEALL 502
>pir||T35664 probable prokaryotic docking protein - Streptomyces coelicolor
>gi|4007739|emb|CAA22423.1| (AL034447) putative
prokaryotic docking protein [Streptomyces coelicolor
A3(2)]
Length = 412
Score = 157 bits (394), Expect = 2e-37
Identities = 104/300 (34%), Positives = 151/300 (49%), Gaps = 20/300 (6%)
Query: 4 DSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEE 63
++LGK L L + E L + +I+ L+ ADV V+ T+E+ R E
Sbjct: 124 NALGKGLLTLLSR--------EHLDDDTWEEIEDTLLTADVGVQP----TQELVERLRER 171
Query: 64 KPPAGISKKEHIIKIVYEELTKFLGT----EAKPIEIKEKPTILLMVGVQGSGKTTTVAK 119
G E + ++ EEL +G E K KP I+++VGV G+GKTTT K
Sbjct: 172 VKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVGVNGTGKTTTTGK 231
Query: 120 LARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFK 179
LAR G V + +DT+R A QL+ + P D +A + V+ K
Sbjct: 232 LARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKEGK 291
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPH----EVILVIDGTIGQQAYNQALAF 235
G D++++DTAGR + L++E+ + ++ H EV+LV+D T GQ QA F
Sbjct: 292 EMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEVLLVLDATTGQNGLIQARVF 351
Query: 236 KEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
E I I++TKLD +AKGG ++ G P+K IG GE DDL PF+PA FV L+G
Sbjct: 352 AEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPFEPAAFVDALIG 411
>emb|CAC12205.1| (AL445066) probable signal recognition particle protein
[Thermoplasma acidophilum]
Length = 288
Score = 157 bits (393), Expect = 2e-37
Identities = 84/265 (31%), Positives = 144/265 (53%), Gaps = 6/265 (2%)
Query: 30 EVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGT 89
EV +I L++ADV++ L ++ + E+ + E + + E + ++
Sbjct: 22 EVADEIPLKLVEADVSLEAAEDLASLVRNKLKEDTT---LDPNEVLSSSILEMMPEY--- 75
Query: 90 EAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQ 149
+ + + +KP ++L +G+ G+GKTTT+ K A + ++ G V + +DT+R GA Q+
Sbjct: 76 KFDVLNVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVIAAADTFRAGAIEQISL 135
Query: 150 LLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISN 209
+ EV D +A + +EH +A+ +D +++DTAGR K+L++EM+ I
Sbjct: 136 IGREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTAGRMNTNKNLLDEMKKIKR 195
Query: 210 EIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPI 269
KP +LVID GQ + NQA F+E +IVTKLD+ A+GG LS P+
Sbjct: 196 VSKPDLTLLVIDAVSGQDSVNQARMFEENVGYDGVIVTKLDTDARGGSILSIYHDLKKPV 255
Query: 270 KFIGTGEKIDDLEPFDPARFVSRLL 294
F+ TG+ +DD+ PFD +V +L+
Sbjct: 256 LFVCTGQGLDDIMPFDRNWYVRKLI 280
>gb|AAG20538.1| (AE005125) signal recognition particle receptor; Dpa [Halobacterium
sp. NRC-1]
Length = 373
Score = 155 bits (388), Expect = 9e-37
Identities = 88/280 (31%), Positives = 146/280 (51%), Gaps = 4/280 (1%)
Query: 23 VDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEE 82
+DEA ++ +R+++ AL+++DV + +V ++ +I+ + E+ S I + E
Sbjct: 93 IDEADLEAPLRELEFALLESDVEMSVVEEILDQIRGDLVGEERKFTESTDTLIEDALREA 152
Query: 83 LTKFLGTE----AKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDT 138
L + IE KP ++ GV G GKTTT+AKLAR+ + G+ + DT
Sbjct: 153 LLSVIDVGQFDLVDEIESTSKPVTIVFTGVNGVGKTTTIAKLARYLESEGFSSVLANGDT 212
Query: 139 WRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEK 198
+R GA Q+++ + ++ D + + VE+ A VD+++ DTAGR
Sbjct: 213 YRAGANQQIEEHAEALGVKCITHEQGGDPTAVVYDAVEYADANDVDVVLGDTAGRLHTSD 272
Query: 199 DLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGA 258
DL+ ++ + + P + V + GQ A N+A F EA+ + I+T D+ ++GG A
Sbjct: 273 DLMSQLEKLDRVVDPDVTVFVDEAVAGQDAVNRAREFDEASAVDGTILTMADADSQGGAA 332
Query: 259 LSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
+S TG PI F+GTG+ +DLEPFDP V LL D
Sbjct: 333 ISVSHVTGKPILFLGTGQAYEDLEPFDPDALVDDLLAASD 372
>gi|11499644 signal recognition particle receptor (dpa) [Archaeoglobus fulgidus]
>gi|7447718|pir||E69507 signal recognition particle
receptor (dpa) homolog - Archaeoglobus fulgidus
>gi|2648469|gb|AAB89189.1| (AE000961) signal recognition
particle receptor (dpa) [Archaeoglobus fulgidus]
Length = 340
Score = 154 bits (386), Expect = 2e-36
Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 17 IARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKK--EH 74
I+R +DE V+ ++ +++ L+++DV +V +++ ++ R + G KK E
Sbjct: 55 ISREVVIDEKKVEGILEELEEILLESDVAFEVVDAISEALKSRLV------GRRKKLTEK 108
Query: 75 IIKIVYEEL----------TKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAKLARH 123
+ IV EEL +F E ++KEK P ++ VGV G+GKTTT+AK+A
Sbjct: 109 LSDIVMEELRSIIFEILDENRFDFDEFIKEKLKEKKPVVIAFVGVNGTGKTTTIAKVANR 168
Query: 124 FQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGV 183
K+GY V + DT+R GA QL++ +++ + D + + ++H ++KG+
Sbjct: 169 LIKQGYSVVLAAGDTFRAGAIEQLEEHAKRLGVKLIKHKHGSDPAAVIYDAIKHAESKGI 228
Query: 184 DLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGS 243
D+++ DTAGR +K+L++++ I KP +I V + G A +A F E I
Sbjct: 229 DVVLADTAGRMHTKKNLLDQLEKIKRVTKPDLIIFVDESIAGNDAVERARMFAETVGIDG 288
Query: 244 IIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
I+TKLD+ KGG A+S T P+ F G G++ DDL FD V R+
Sbjct: 289 SILTKLDADPKGGSAISISYVTKKPVLFFGVGQEYDDLVKFDSKWLVERI 338
>sp|P14929|PILA_NEIGO PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN (DOCKING PROTEIN)
Length = 416
Score = 152 bits (381), Expect = 6e-36
Identities = 93/293 (31%), Positives = 158/293 (53%), Gaps = 18/293 (6%)
Query: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
++ +L + G + E L +E ++ LI D+ + L K+++ R + G+
Sbjct: 133 MAKSLAGVFGGGQIGEDLYEE----LETVLITGDMGMEATEYLMKDVRGRVSLK----GL 184
Query: 70 SKKEHIIKIVYEELTKFLGTEAKPIEIKE--KPTILLMVGVQGSGKTTTVAKLARHFQKR 127
+ + E L + KP+ + E +P ++++ G+ G+GKTT++ KLA++FQ +
Sbjct: 185 KDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQ 244
Query: 128 GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLII 187
G V + DT+R A QL+ ++ V D+ + + V+ KA+ +D+++
Sbjct: 245 GKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAAKAR-IDIVL 302
Query: 188 VDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPI 241
DTAGR + L+EE++ + ++ PHE+I+V+D IGQ A NQ AF +A +
Sbjct: 303 ADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGL 362
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
+IVTKLD +AKGG + + P+++IG GE IDDL PFD FV RLL
Sbjct: 363 TGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDRLL 415
>emb|CAB39375.1| (AJ010319) signal recognition particle [Corynebacterium glutamicum]
Length = 263
Score = 152 bits (381), Expect = 6e-36
Identities = 88/263 (33%), Positives = 146/263 (55%), Gaps = 15/263 (5%)
Query: 2 VLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRAL 61
+ +SL L++AL + G + EA + R+I+ AL++ADV++ +V I+ RA+
Sbjct: 1 MFESLSDRLNSALSGLRGKGKLTEADINATTREIRLALLEADVSLTVVRAFINRIKERAV 60
Query: 62 EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKL 120
+ ++ + +IKIV EEL + LG E + + + K PT++++ G+QG+GKTT KL
Sbjct: 61 GAEVSQALNPAQQVIKIVNEELVQILGGETRRLSLAKNPPTVIMLAGLQGAGKTTLAGKL 120
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG-DPNEK-------------D 166
++H K+G+ +V D RPGA QL+ + + + F DP D
Sbjct: 121 SKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSIDSLEHEMGTSHGD 180
Query: 167 AIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQ 226
+++A+ G+E K D++IVDTAGR ++ L+ + R I I P EV+ VID IGQ
Sbjct: 181 PVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMTQARNIREAINPDEVLFVIDSMIGQ 240
Query: 227 QAYNQALAFKEATPIGSIIVTKL 249
A + A AF++ +++TKL
Sbjct: 241 DAVDTAEAFRDGVDFTGVVLTKL 263
>emb|CAC02336.1| (AL390114) probable signal recognition particle 54 Kd subunit
[Leishmania major]
Length = 263
Score = 152 bits (381), Expect = 6e-36
Identities = 81/243 (33%), Positives = 122/243 (49%), Gaps = 2/243 (0%)
Query: 114 TTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKE 173
TT+ K A +FQ++G+ +VC+DT GAY QL+Q + + + +A
Sbjct: 3 TTSCTKXAAYFQRKGFXTALVCADTXXAGAYDQLRQXATKXXVRFYXSLTXAHPVXIAXX 62
Query: 174 GVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQAL 233
V DLIIV T+ RHK E L E M+ + + P++++ V+ T GQ QA
Sbjct: 63 XVAELXXXKYDLIIVXTSXRHKXESALFEXMKXVXXXVXPNDIVXVMSATDGQAVXXQAR 122
Query: 234 AFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
E +GS+IVT D GGGA S VA +P FI TGE +D + F+P R V +
Sbjct: 123 XXXEMVAVGSVIVTXXDCQXXGGGAXSXVAXXRSPXVFIXTGEXXEDXDLFNPXRXVXXM 182
Query: 294 LGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMI 353
LG+G L++ + + R G F +DMY L+ + K G + +I+ M+
Sbjct: 183 LGMGXXXXLMD--XXXDXXIXGNXXXYXRLXDGLFXXRDMYEHLQNVLKXGSVGKIMEML 240
Query: 354 PGL 356
PG+
Sbjct: 241 PGM 243
>sp|P51835|FTSY_BACSU CELL DIVISION PROTEIN FTSY HOMOLOG >gi|1075912|pir||JC4093 signal
recognition particle receptor alpha chain - Bacillus
subtilis >gi|1237016|dbj|BAA10978.1| (D64116) Srb
[Bacillus subtilis] >gi|1237019|dbj|BAA08616.1| (D49781)
Srb [Bacillus subtilis]
Length = 329
Score = 152 bits (380), Expect = 8e-36
Identities = 95/284 (33%), Positives = 153/284 (53%), Gaps = 18/284 (6%)
Query: 17 IARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHII 76
++R VDE +E ++ LI ADV V++L E+++ E I + +
Sbjct: 41 VSRYRKVDEDFFEE----LEEVLISADVGFTTVMELIDELKK----EVKRRNIQDPKEVQ 92
Query: 77 KIVYEELTKFLGT---EAKPIEIKE-KPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVG 132
++ E+L + + + + I++ + ++L+VGV G GKTTT+ KLA ++ G V
Sbjct: 93 SVISEKLVEIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKMKQEGKSVV 152
Query: 133 VVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAG 192
+ DT+R GA QL+ + + V D + + V KA+ D++I DTAG
Sbjct: 153 LAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGSDPAAVIYDAVHAAKARNADVLICDTAG 212
Query: 193 RHKEEKDLIEEM----RMISNEIK--PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246
R + + +L++E+ R+I E+ PHEV+L +D T GQ A QA F +AT + I +
Sbjct: 213 RLQNKVNLMKELEKVKRVIEREVPETPHEVLLALDATTGQNAMAQAKEFSKATNVTGIAL 272
Query: 247 TKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFV 290
TKLD +AKGG L+ P+K +G GEK+DDL+ FDP +V
Sbjct: 273 TKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQEFDPESYV 316
>pir||T48922 probable signal recognition particle receptor alpha chain
[imported] - Desulfurolobus ambivalens (fragment)
>gi|1217621|emb|CAA65233.1| (X95989) signal recognition
particle receptor [Acidianus ambivalens]
Length = 374
Score = 152 bits (380), Expect = 8e-36
Identities = 91/299 (30%), Positives = 159/299 (52%), Gaps = 16/299 (5%)
Query: 5 SLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEK 64
S+G L+ + I R + E + +++ +++ L+++DV++ + K+ ++++ + +K
Sbjct: 80 SIGSKLN--IFNIFRYREIKEDDIDDIIEELRTELLESDVSLEVTDKILEDLKSSLIGKK 137
Query: 65 PPAGISKKEHIIKIVYEEL----------TKFLGTEAKPIEIKEKPTILLMVGVQGSGKT 114
+++ E + ++V + L +F + I+ KP +++ GV G GKT
Sbjct: 138 ----VNRSEDLDELVKKSLKNSIMEILEKNRFERNLIEEIKRSPKPYVIMFFGVNGVGKT 193
Query: 115 TTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEG 174
TT+AK+A +K G KV V SDT+R A QL I + D +A +
Sbjct: 194 TTIAKVAYMLKKAGLKVIVSASDTFRAAAQEQLAIHCQKLEIPLVKGKYGGDPASVAFDA 253
Query: 175 VEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALA 234
++ K++G+D++++DTAGR +KDL EE++ I KP+ +LVID G A QA
Sbjct: 254 IQAAKSRGIDVVLIDTAGRMHVDKDLTEELKRIVRISKPNLKLLVIDALAGNDALEQAKY 313
Query: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
F+ +I+TK+D+ AKGG LS P+ F+GTG+ DDL PF F+ R+
Sbjct: 314 FENVVDYDGVILTKVDADAKGGVVLSLAYELKKPVIFLGTGQNYDDLIPFSVDWFIERI 372
>emb|CAB13468.1| (Z99112) signal recognition particle (docking protein) [Bacillus
subtilis]
Length = 329
Score = 152 bits (380), Expect = 8e-36
Identities = 95/284 (33%), Positives = 153/284 (53%), Gaps = 18/284 (6%)
Query: 17 IARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHII 76
++R VDE +E ++ LI ADV V++L E+++ E I + +
Sbjct: 41 VSRYRKVDEDFFEE----LEEVLISADVGFTTVMELIDELKK----EVKRRNIQDPKEVQ 92
Query: 77 KIVYEELTKFLGT---EAKPIEIKE-KPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVG 132
++ E+L + + + + I++ + ++L+VGV G GKTTT+ KLA ++ G V
Sbjct: 93 SVISEKLVEIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKMKQEGKSVV 152
Query: 133 VVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAG 192
+ DT+R GA QL+ + + V D + + V KA+ D++I DTAG
Sbjct: 153 LAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGSDPAAVIYDAVHAAKARNADVLICDTAG 212
Query: 193 RHKEEKDLIEEM----RMISNEIK--PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246
R + + +L++E+ R+I E+ PHEV+L +D T GQ A QA F +AT + I +
Sbjct: 213 RLQNKVNLMKELEKVKRVIEREVPEAPHEVLLALDATTGQNAMAQAKEFSKATNVTGIAL 272
Query: 247 TKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFV 290
TKLD +AKGG L+ P+K +G GEK+DDL+ FDP +V
Sbjct: 273 TKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQEFDPESYV 316
>sp|Q10969|FTSY_MYCTU CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7477918|pir||A70748 probable
cell division protein FtsY - Mycobacterium tuberculosis
(strain H37RV) >gi|1405957|emb|CAA98981.1| (Z74697) ftsY
[Mycobacterium tuberculosis]
Length = 422
Score = 152 bits (379), Expect = 1e-35
Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 8/291 (2%)
Query: 9 ALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAG 68
AL L + G +DE + +D++ L+ AD+ + +++ R
Sbjct: 136 ALGRGLLGLIGGGDLDE----DSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTE 191
Query: 69 ISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRG 128
+ + ++ EL + + + P++LL+VGV G+GKTTTV KLAR G
Sbjct: 192 ADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADG 251
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
+V + +DT+R A QL+ V P D +A + V+ A G D++++
Sbjct: 252 RRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLI 311
Query: 189 DTAGRHKEEKDLIEEM----RMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSI 244
DTAGR + L++E+ R+++ EV+LV+D TIGQ QA F E I
Sbjct: 312 DTAGRLHTKVGLMDELDKVKRVVTRRASVDEVLLVLDATIGQNGLAQARVFAEVVDISGA 371
Query: 245 IVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
++TKLD +AKGG G P+K +G GE DDL PF+PA FV LLG
Sbjct: 372 VLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422
>emb|CAA71224.1| (Y10137) homologue [Mycoplasma mycoides]
Length = 412
Score = 152 bits (379), Expect = 1e-35
Identities = 99/306 (32%), Positives = 167/306 (54%), Gaps = 15/306 (4%)
Query: 8 KALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPA 67
K+ N K I + + E +++ LIQ D+ +++VLK++ ++++ +
Sbjct: 105 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE 164
Query: 68 GISKKEHIIKIVYEELTKFLGTEAK-PIEIKE-KPTILLMVGVQGSGKTTTVAKLARHFQ 125
I K+ +++ +Y+ T T K I+ KE + I ++VGV G+GKTT++AK+A ++
Sbjct: 165 NI--KDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA 222
Query: 126 KRGYKVGVVCSDTWRPGAYHQL----KQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+ GYKV + +DT+ GA QL K L+ V + D + + ++ K +
Sbjct: 223 ELGYKVLIAAADTFSAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQ 282
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAF 235
DL+++DTAGR + + +L+ E+ ++ I+ PHEV+LVID T GQ QA F
Sbjct: 283 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEF 342
Query: 236 KEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
+ + II+TK+DS++KGG L+ PIK IG GEK+DDL FD +++ L
Sbjct: 343 SKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVH-LS 401
Query: 296 LGDIQG 301
G +QG
Sbjct: 402 SGFMQG 407
>sp|P57137|FTSY_BUCAI CELL DIVISION PROTEIN FTSY HOMOLOG >gi|10038716|dbj|BAB12751.1|
(AP001118) cell division protein ftsY [Buchnera sp. APS]
Length = 378
Score = 151 bits (377), Expect = 2e-35
Identities = 96/298 (32%), Positives = 153/298 (51%), Gaps = 15/298 (5%)
Query: 3 LDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALE 62
L + K L + + +I + +DE L +E+ + A I + R++ L K++ R L+
Sbjct: 87 LKTTKKNLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLK 146
Query: 63 EKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAKLA 121
E + ++ ++ L P+EI P ++L+VGV G+GKTTTVAKLA
Sbjct: 147 NS--------EKLYFLLKRKMFNILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLA 198
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
++ G + + +DT+R QL+ L +I V + D + + V+ K+K
Sbjct: 199 EKYKLEGKSIMLAAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSK 258
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAF 235
+D++I+DTAGR + LIEE++ I IK PHE +L+ID GQ Q F
Sbjct: 259 KIDVLIIDTAGRLHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIF 318
Query: 236 KEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
+A + II+TKLD +AKGG S PI++IG GEK+ DL F+ F+ +
Sbjct: 319 HKALNLTGIIITKLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEFIESI 376
>emb|CAB40382.1| (AJ010820) chloroplast FtsY homolog [Arabidopsis thaliana]
Length = 366
Score = 150 bits (375), Expect = 3e-35
Identities = 92/300 (30%), Positives = 154/300 (50%), Gaps = 15/300 (5%)
Query: 8 KALSNALKKIARAGSVDEALV-------KEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
K S K +DE L+ V+ +++ AL+ +D ++ +++ + ++
Sbjct: 66 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDI 125
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
+ K +G K+ + + V E L K + + KP ++++VGV G GKTT++ KL
Sbjct: 126 MSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFR-KPAVIMIVGVNGGGKTTSLGKL 184
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIE-VFGDPNEKDAIKLAKEGVEHFK 179
A + G KV + DT+R A QL+ + E V + ++ A + + V+ K
Sbjct: 185 AHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 244
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEI------KPHEVILVIDGTIGQQAYNQAL 233
+G D+++ DT+GR L+EE+ + P+E++LV+DG G QA
Sbjct: 245 EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR 304
Query: 234 AFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
F E I +I+TKLD SA+GG +S V G P+KFIG GE ++DL+PFDP FV+ +
Sbjct: 305 EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364
>gb|AAD47910.1|AF120112_1 (AF120112) chloroplast SRP receptor homolog, alpha subunit CPFTSY;
chloroplast signal recognition particle receptor alpha
homolog CPFTSY [Arabidopsis thaliana]
Length = 366
Score = 150 bits (375), Expect = 3e-35
Identities = 92/300 (30%), Positives = 154/300 (50%), Gaps = 15/300 (5%)
Query: 8 KALSNALKKIARAGSVDEALV-------KEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
K S K +DE L+ V+ +++ AL+ +D ++ +++ + ++
Sbjct: 66 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDI 125
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKL 120
+ K +G K+ + + V E L K + + KP ++++VGV G GKTT++ KL
Sbjct: 126 MSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFR-KPAVIMIVGVNGGGKTTSLGKL 184
Query: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIE-VFGDPNEKDAIKLAKEGVEHFK 179
A + G KV + DT+R A QL+ + E V + ++ A + + V+ K
Sbjct: 185 AHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 244
Query: 180 AKGVDLIIVDTAGRHKEEKDLIEEMRMISNEI------KPHEVILVIDGTIGQQAYNQAL 233
+G D+++ DT+GR L+EE+ + P+E++LV+DG G QA
Sbjct: 245 EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR 304
Query: 234 AFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
F E I +I+TKLD SA+GG +S V G P+KFIG GE ++DL+PFDP FV+ +
Sbjct: 305 EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364
>pir||T02470 cell division protein ftsY homolog F4I18.25 - Arabidopsis thaliana
>gi|3386617|gb|AAC28547.1| (AC004665) putative signal
recognition particle receptor (alpha subunit)
[Arabidopsis thaliana]
Length = 373
Score = 150 bits (374), Expect = 4e-35
Identities = 92/306 (30%), Positives = 156/306 (50%), Gaps = 20/306 (6%)
Query: 8 KALSNALKKIARAGSVDEALV-------KEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
K S K +DE L+ V+ +++ AL+ +D ++ +++ + ++
Sbjct: 66 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDI 125
Query: 61 LEEKPPAGISKK---EHIIKIVYEELTKFLGTEAKPIEIK---EKPTILLMVGVQGSGKT 114
+ K +G K I+ + E + + L + E++ KP ++++VGV G GKT
Sbjct: 126 MSGKLKSGSEIKVDLNEIVDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKT 185
Query: 115 TTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIE-VFGDPNEKDAIKLAKE 173
T++ KLA + G KV + DT+R A QL+ + E V + ++ A + +
Sbjct: 186 TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 245
Query: 174 GVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEI------KPHEVILVIDGTIGQQ 227
V+ K +G D+++ DT+GR L+EE+ + P+E++LV+DG G
Sbjct: 246 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLN 305
Query: 228 AYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPA 287
QA F E I +I+TKLD SA+GG +S V G P+KFIG GE ++DL+PFDP
Sbjct: 306 MLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPE 365
Query: 288 RFVSRL 293
FV+ +
Sbjct: 366 AFVNAI 371
>sp|O05948|FTSY_RICPR CELL DIVISION PROTEIN FTSY HOMOLOG >gi|7447730|pir||B71638 cell
division protein ftsy (ftsY) RP775 - Rickettsia
prowazekii >gi|2073477|emb|CAA72477.1| (Y11784) cell
division protein [Rickettsia prowazekii]
>gi|3861303|emb|CAA15202.1| (AJ235273) CELL DIVISION
PROTEIN FTSY (ftsY) [Rickettsia prowazekii]
Length = 303
Score = 149 bits (373), Expect = 5e-35
Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 16/301 (5%)
Query: 3 LDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALE 62
L +S + KI +D KE + +++ LI +D+++ +V + +E + +
Sbjct: 12 LSKTSNTISAGIDKIFYKRKLD----KETLNELEELLISSDISISVVTHIIEEFKNVKFD 67
Query: 63 EKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGVQGSGKTTTVAKLA 121
+ + + KE I K++ ++L+K P + E K I+L+ GV G GKTTT+ KL+
Sbjct: 68 KTIDSD-TVKEAIAKLIEQQLSK----SEIPFTLSENKLNIILVCGVNGVGKTTTIGKLS 122
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAK 181
+ G KV V DT+R A +QL + + + D +A +E +
Sbjct: 123 ALYSAEGKKVAVAACDTFRAAAINQLSSWVHRANALLITGKASADPASVAYRAIEESIKQ 182
Query: 182 GVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALAF 235
+D++ +DTAGR K+L++E+ I IK P IL+ID GQ YNQ F
Sbjct: 183 NIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILIIDAITGQNTYNQIEYF 242
Query: 236 KEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
+ T + +IVTKLD SAK G + AV P+ FIG GEKI+DL+ F+ F L+G
Sbjct: 243 NDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKIFNRHDFSRSLVG 302
Query: 296 L 296
L
Sbjct: 303 L 303
>pir||D75296 signal recognition particle-docking protein FtsY - Deinococcus
radiodurans (strain R1)
>gi|6460064|gb|AAF11805.1|AE002058_5 (AE002058) signal
recognition particle-docking protein FtsY [Deinococcus
radiodurans]
Length = 317
Score = 149 bits (373), Expect = 5e-35
Identities = 101/307 (32%), Positives = 157/307 (50%), Gaps = 19/307 (6%)
Query: 4 DSLGKALSNALKKIA-RAGSVDEALVKEVVR-----DIQRALIQADVNVRLVLKLTKEIQ 57
D L + LS ++I+ AG +D+ + R D++ ALI ADV ++ ++I+
Sbjct: 5 DRLRQGLSKTRQQISGTAGPLDQEVQTAFTRIDNIEDLEYALIAADVGRAATEEIIEDIR 64
Query: 58 RRALEEKPPA-----GISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSG 112
+ A + + + + + EL + ++ K +++++GV G G
Sbjct: 65 KNGEGRLQDALMRALTLQLEPNARRAQFRELG--FSPDVSRSKVDPKGHVVMVIGVNGVG 122
Query: 113 KTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAK 172
KTTT+AKL +++ +RG V DT+R A QL + + V + D +A
Sbjct: 123 KTTTIAKLGQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQGVDGGDPAAVAF 182
Query: 173 EGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEI------KPHEVILVIDGTIGQ 226
+ KA+G DL+ VDTAGR + +L+EE++ + I +P EV LV+D GQ
Sbjct: 183 DAAGARKARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAEVWLVLDAVTGQ 242
Query: 227 QAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDP 286
QA F EATP+ ++VTKLD +AKGG + V G PIKFIG GE+ DL+PFD
Sbjct: 243 NGLQQAKKFHEATPLTGVVVTKLDGTAKGGILVPIVRELGVPIKFIGVGEQPGDLQPFDS 302
Query: 287 ARFVSRL 293
FV L
Sbjct: 303 QEFVRAL 309
>sp|O32861|FTSY_MYCHO CELL DIVISION PROTEIN FTSY HOMOLOG >gi|2292927|emb|CAA72412.1|
(Y11726) FtsY protein [Mycoplasma hominis]
Length = 351
Score = 147 bits (368), Expect = 2e-34
Identities = 94/291 (32%), Positives = 163/291 (55%), Gaps = 15/291 (5%)
Query: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKP 65
L K+ S+ + I + + +E D++ LI +D++++LV + E ++ E
Sbjct: 51 LSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECKKEVRNEN- 109
Query: 66 PAGISKKEHIIKIVYEELTKFLGTEA---KPIEIKE-KPTILLMVGVQGSGKTTTVAKLA 121
I+ + I +I+ ++L + + + IK+ + ++L+VGV GSGKTT+++K+A
Sbjct: 110 ---ITDPKLINEIIADKLFTIYTSNSVVDTTLNIKDNRLNVILVVGVNGSGKTTSISKIA 166
Query: 122 RHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFG-DPNEKDAIKLAKEGVEHFKA 180
+ G KV + DT+R A QL+ ++ + NE D + ++ K+
Sbjct: 167 KKLIDEGKKVLIAAGDTFRAAAVEQLEIWAKRVGADIVTPNENEVDPAAVVYRAIDIAKS 226
Query: 181 KGVDLIIVDTAGRHKEEKDLIEEM----RMISNEIK--PHEVILVIDGTIGQQAYNQALA 234
K D++IVDTAGR + + +L+ E+ R+++++I PHE +LV+D T GQ QA
Sbjct: 227 KKYDILIVDTAGRLQNKVNLMNELAKINRVLASKIPDAPHESLLVLDATTGQNGVIQARV 286
Query: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFD 285
FKE+TP+ II+TK+D ++KGG L+ G +K+IG GEK+DDL FD
Sbjct: 287 FKESTPLTGIILTKMDGTSKGGIVLTIKDEIGLFVKYIGLGEKVDDLAEFD 337
>pir||H81326 probable signal recognition particle protein Cj1206c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968639|emb|CAB73460.1| (AL139077) putative signal
recognition particle protein [Campylobacter jejuni]
Length = 288
Score = 145 bits (361), Expect = 1e-33
Identities = 95/293 (32%), Positives = 156/293 (52%), Gaps = 22/293 (7%)
Query: 8 KALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPA 67
K L+ L+ I ++ + K+++ +I L++ADV+ +V ++ + PP
Sbjct: 7 KGLAKTLENIVGVKGENKKITKDLLEEI---LLEADVSYEIVEEIIYYL--------PPQ 55
Query: 68 GISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKR 127
KKE + ++ + + E K +EKP + L++GV G+GKTT++AKLA ++ +
Sbjct: 56 NEVKKEDLKRV----MGSYFLYEKKETN-QEKPFVELILGVNGAGKTTSIAKLAYLYKNQ 110
Query: 128 GYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLII 187
KV + DT+R GA QLK +++ D + + + KAK D +I
Sbjct: 111 NQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVTFDTISKAKAKDFDRVI 170
Query: 188 VDTAGRHKEEKDL---IEEMRMISN---EIKPHEVILVIDGTIGQQAYNQALAFKEATPI 241
+DTAGR + +K+L +E++ ISN E PH ILV+DGT G QA AF E +
Sbjct: 171 IDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKL 230
Query: 242 GSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
+I+TKLD +AKGG S PI ++G GE++ DL+ F+ + ++ LL
Sbjct: 231 DGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLL 283
>pir||D82930 SRP family of GTP-binding proteins, cell division protein UU141
[imported] - Ureaplasma urealyticum
>gi|6899100|gb|AAF30547.1|AE002114_14 (AE002114) SRP
family of GTP-binding proteins - cell division protein
[Ureaplasma urealyticum]
Length = 351
Score = 142 bits (355), Expect = 7e-33
Identities = 95/298 (31%), Positives = 161/298 (53%), Gaps = 20/298 (6%)
Query: 9 ALSNALKKIA-RAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPA 67
AL++A+ ++A + +DE + ++ LI DV K+ + I+ + +K
Sbjct: 54 ALTDAINELAVKYIDIDERWYEH----LEEVLISYDVGYVATNKIIESIRNEMIYQK--- 106
Query: 68 GISKKEHIIKIVYEELTKFLGTEAK---PIEIKEKPT-ILLMVGVQGSGKTTTVAKLARH 123
++ + I I+ +++ + + + I +KE T ++L+VGV G GKTT++AK+ +
Sbjct: 107 -VNDPDLIKSIIIDKIFIYYIQDTEINTAINLKENQTNVVLVVGVNGVGKTTSIAKITKK 165
Query: 124 FQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEV-FGDPNEKDAIKLAKEGVEHFKAKG 182
F KV +V DT+R GA QLK +++ + +D + GV+ +
Sbjct: 166 FIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAGVKKGYEQK 225
Query: 183 VDLIIVDTAGRHKEEKDLIEEMRMISN------EIKPHEVILVIDGTIGQQAYNQALAFK 236
DL+I DT+GR + + +L+ E++ I + E PHE +LV+D T GQ NQA AF
Sbjct: 226 YDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEYAPHETLLVLDATQGQSGINQAKAFN 285
Query: 237 EATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
E T I II+TK+DS+++GG L+ A P+K IG GEK++DL FD +V ++
Sbjct: 286 EVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLEDLSVFDLEMYVDSIV 343
>sp|O33010|FTSY_MYCLE CELL DIVISION PROTEIN FTSY HOMOLOG >gi|2251151|emb|CAB10596.1|
(Z97369) FtsY protein [Mycobacterium leprae]
Length = 430
Score = 140 bits (349), Expect = 3e-32
Identities = 88/290 (30%), Positives = 141/290 (48%), Gaps = 8/290 (2%)
Query: 9 ALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAG 68
A ++ + G +DE + ++++ L+ AD+ + ++ R L
Sbjct: 144 AFGRSILGLIVGGDLDE----DSWQELEDTLLVADLGPVATESVMSALRSRLLNSNVHTE 199
Query: 69 ISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRG 128
+ + ++ EL + + + + P +LL+VGV G+GKTTTV KLAR G
Sbjct: 200 SDARTMLRDVLISELQPDMDRSIRALPHADHPAVLLIVGVNGTGKTTTVGKLARVLVADG 259
Query: 129 YKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIV 188
+V + +DT+R A QL+ E+ D +A + V+ G D++++
Sbjct: 260 RRVVLGAADTFRAAAADQLQTWASRVGAELVRGVEGADPASVAFDAVDKGIGAGADVVVI 319
Query: 189 DTAGRHKEEKDLIEEM----RMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSI 244
DTAGR + L++E+ R+++ EV+LV+D TIGQ Q F E I
Sbjct: 320 DTAGRLHTKVGLMDELDKIKRVVTRRAAVDEVLLVLDATIGQNGLTQVRVFAEVVDITGA 379
Query: 245 IVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294
++TKLD +AKGG G P+K +G GE DDL PF+PA FV LL
Sbjct: 380 VLTKLDGTAKGGIVFRIQRELGVPVKLVGLGEGPDDLAPFEPAVFVDALL 429
>gb|AAD11975.1| (AF072125) signal receptor alpha subunit [Giardia intestinalis]
Length = 571
Score = 98.7 bits (242), Expect = 1e-19
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 28 VKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87
V++++ +++ALI +V + +L K + EK K +I+ + + + K +
Sbjct: 282 VEKLLSSLRQALINQNVASDVADELLKGVSASLEGEKVGLFSRTKSVVIQALKDSIRKIV 341
Query: 88 -------------GTEAKPIEIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVV 134
E + + +P ++ M GV G GKTT++AKL F+ G + V
Sbjct: 342 QFEDRFLMKRILASKEERAAGQRSRPYVICMTGVNGVGKTTSIAKLLYIFKNNGSRSLVC 401
Query: 135 CSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRH 194
D++R GA QL++ + ++ K+A +AK G++ ++ D+ ++DT GR
Sbjct: 402 ACDSFRSGAVEQLQEHCNRLGATLYSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQ 461
Query: 195 KEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAF-------KEATPIGSIIVT 247
L++ + + E P V+ V + G + Q F + I II+T
Sbjct: 462 YNNGPLMQALGALVLENAPDVVLFVGEALTGNEGVEQLKQFDCALKSYTNSRGIDGIILT 521
Query: 248 KLDSSA-KGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLG 295
K D+ K G AL+ PI ++GTG+ D DP+ ++G
Sbjct: 522 KFDTCGDKVGAALNLCFVCDLPILYVGTGQSYPDFGVLDPSHIADLIVG 570
>emb|CAB56078.1| (AJ238760) cell division protein [Rickettsia montanensis]
Length = 136
Score = 97.9 bits (240), Expect = 2e-19
Identities = 54/133 (40%), Positives = 76/133 (56%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A G+E + +D++ +DTAGR +K+L++E+ I IK P +LVID
Sbjct: 4 VAYRGMEESMKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F +AT + +IVTKLD SAK G + V P+ FIG GEKI+DL+
Sbjct: 64 TGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNRHDFARNLVGL 136
>emb|CAB56102.1| (AJ238759) cell division protein [Rickettsia sibirica]
Length = 136
Score = 97.5 bits (239), Expect = 3e-19
Identities = 54/133 (40%), Positives = 76/133 (56%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A G+E + +D++ +DTAGR +K+L++E+ I IK P +LVID
Sbjct: 4 VAYHGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F +AT + +IVTKLD SAK G + V P+ FIG GEKI+DL+
Sbjct: 64 TGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNQHDFARNLVGL 136
>emb|CAB56092.1| (AJ238761) cell division protein [Rickettsia rhipicephali]
Length = 136
Score = 97.5 bits (239), Expect = 3e-19
Identities = 54/133 (40%), Positives = 76/133 (56%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A G+E + +D++ +DTAGR +K+L++E+ I IK P +LVID
Sbjct: 4 VAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDKNAPTHSVLVIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F +AT + +IVTKLD SAK G + V P+ FIG GEKI+DL+
Sbjct: 64 TGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNRHDFAKNLVGL 136
>emb|CAB56097.1| (AJ238758) cell division protein [Rickettsia rickettsii]
Length = 136
Score = 96.7 bits (237), Expect = 4e-19
Identities = 53/133 (39%), Positives = 76/133 (56%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A G+E + +D++ +DTAGR +K+L++E+ I IK P +LVID
Sbjct: 4 VAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F +AT + +IVTKLD SAK G + V P+ FIG GEKI+DL+
Sbjct: 64 TGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F ++GL
Sbjct: 124 FNQHDFARNIVGL 136
>emb|CAB56066.1| (AJ238763) cell division protein [Rickettsia felis]
Length = 136
Score = 95.2 bits (233), Expect = 1e-18
Identities = 53/133 (39%), Positives = 75/133 (55%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A +E + +D++ +DTAGR +K+L++E+ I IK P +LVID
Sbjct: 4 VAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F +AT + +IVTKLD SAK G + V P+ FIG GEKI+DL+
Sbjct: 64 TGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNRHDFAKSLVGL 136
>emb|CAB56084.1| (AJ238755) cell division protein [Rickettsia prowazekii]
>gi|5912305|emb|CAB56088.1| (AJ238756) cell division
protein [Rickettsia prowazekii]
Length = 136
Score = 94.0 bits (230), Expect = 3e-18
Identities = 53/133 (39%), Positives = 74/133 (54%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A +E + +D++ +DTAGR K+L++E+ I IK P IL+ID
Sbjct: 4 VAYRAIEESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILIIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F + T + +IVTKLD SAK G + AV P+ FIG GEKI+DL+
Sbjct: 64 TGQNTYNQIEYFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNRHDFSRSLVGL 136
>emb|CAB56072.1| (AJ238762) cell division protein [Rickettsia helvetica]
Length = 136
Score = 92.4 bits (226), Expect = 9e-18
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A +E + +D++ +DTAGR +K+L++E+ I IK P +L+ID
Sbjct: 4 VAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELAKIVKVIKKLDENAPTHSVLIIDAI 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F +AT + +IVTKLD SAK G + V P+ FI GEKI+DL+
Sbjct: 64 TGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFISIGEKIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNRHDFAKSLVGL 136
>emb|CAB56107.1| (AJ238757) cell division protein [Rickettsia typhi]
Length = 136
Score = 91.7 bits (224), Expect = 1e-17
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 170 LAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGT 223
+A ++ + +D++ +DTAGR K+L++E+ I IK P IL+ID
Sbjct: 4 VAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILIIDAV 63
Query: 224 IGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEP 283
GQ YNQ F + T + +I+TKLD SAK G + AV PI FIG GE+I+DL+
Sbjct: 64 TGQNTYNQIEYFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIEDLKI 123
Query: 284 FDPARFVSRLLGL 296
F+ F L+GL
Sbjct: 124 FNRHDFSRSLVGL 136
>pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
>gi|6435762|pdb|1QB2|A Chain A, Crystal Structure Of The
Conserved Subdomain Of Human Protein Srp54m At 2.1a
Resolution: Evidence For The Mechanism Of Signal Peptide
Binding
Length = 109
Score = 87.4 bits (213), Expect = 3e-16
Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 14/113 (12%)
Query: 327 KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEE-----RLRKFKVIMDS 381
+FTL+DMY Q + + KMGP QIL MIPG G + +S G E RL+K IMDS
Sbjct: 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFG----TDFMSKGNEQESMARLKKLMTIMDS 56
Query: 382 MTEEELMNPDIINY-----SRIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
M ++EL + D RI+R+ARGSG S +DV+ELL QY + + K M
Sbjct: 57 MNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 109
>gb|AAC44500.1| (U48883) signal recognition particle protein [Streptococcus mutans]
Length = 142
Score = 85.0 bits (207), Expect = 1e-15
Identities = 49/127 (38%), Positives = 74/127 (57%), Gaps = 1/127 (0%)
Query: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
M +SL + L K + + E V+EV ++I+ AL++ADV + + + K +++RA
Sbjct: 1 MAFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVAKEFIKRVRKRA 60
Query: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEK-PTILLMVGVQGSGKTTTVAK 119
+ + + + IIKIV EELT LG+E IE K PTI++MVG+QG+GKTT K
Sbjct: 61 VGHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGK 120
Query: 120 LARHFQK 126
LA K
Sbjct: 121 LANKLVK 127
>pir||F82123 probable flagellar biosynthetic protein FlhF VC2068 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656614|gb|AAF95214.1| (AE004280) flagellar
biosynthetic protein FlhF, putative [Vibrio cholerae]
Length = 495
Score = 74.5 bits (180), Expect = 2e-12
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 26/237 (10%)
Query: 95 EIKEKPTILLMVGVQGSGKTTTVAKLARH--FQKRGYKVGVVCSDTWRPGAYHQLKQLLD 152
+I ++ ++ ++G G GKTTTVAKLA + V +V +DT+R GA+ QL
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLS---- 332
Query: 153 PYHIEVFGDPNEKDAIKLAKEGVE----HFKAKGVDLIIVDTAGRHKEEKDLIEEMRMIS 208
+ + G P +++AK+ E ++ + LI+VDTAG + + L E++ +
Sbjct: 333 -IYGRIMGCP-----VRVAKDSNELADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLM 386
Query: 209 NEI-KPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGA 267
E + LV+ T ++ + + P+ I+TKLD G +S V
Sbjct: 387 QESGETIHSYLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNAL 446
Query: 268 PIKFIGTGEKI-DDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERF 323
P+ +I G+++ +D+ P V++ LLE K E E + D ERF
Sbjct: 447 PVAYIANGQRVPEDIVIAQPKYMVAK------ANELLE--KSTEDEPHYWTSDSERF 495
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153798996
Number of Sequences: 2977
Number of extensions: 6642353
Number of successful extensions: 27699
Number of sequences better than 1.0e-10: 173
Number of HSP's better than 0.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 27119
Number of HSP's gapped (non-prelim): 189
length of query: 443
length of database: 189,106,746
effective HSP length: 60
effective length of query: 383
effective length of database: 153,197,526
effective search space: 58674652458
effective search space used: 58674652458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)