BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0321 (PAB0321) DE:Hypothetical protein
(142 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75165 hypothetical protein PAB0321 - Pyrococcus abyssi (st... 308 3e-83
pir||F71176 hypothetical protein PH1693 - Pyrococcus horikoshii ... 272 1e-72
gi|11499033 conserved hypothetical protein [Archaeoglobus fulgid... 73 2e-12
pir||C71199 hypothetical protein PH1864 - Pyrococcus horikoshii ... 72 3e-12
pir||B75159 hypothetical protein PAB2060 - Pyrococcus abyssi (st... 70 1e-11
>pir||D75165 hypothetical protein PAB0321 - Pyrococcus abyssi (strain Orsay)
>gi|5457913|emb|CAB49403.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 142
Score = 308 bits (780), Expect = 3e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MEKERLLAKINLKTGELEVVDEDFRFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDY 60
MEKERLLAKINLKTGELEVVDEDFRFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDY
Sbjct: 1 MEKERLLAKINLKTGELEVVDEDFRFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDY 60
Query: 61 FVDFTKMVYRGPKFLGYAMKKRPFDDACVFLDPETKRCRIYEHRPLACRLYPFALVKHRD 120
FVDFTKMVYRGPKFLGYAMKKRPFDDACVFLDPETKRCRIYEHRPLACRLYPFALVKHRD
Sbjct: 61 FVDFTKMVYRGPKFLGYAMKKRPFDDACVFLDPETKRCRIYEHRPLACRLYPFALVKHRD 120
Query: 121 YLEIYVRNVNCPGINHPEGVPI 142
YLEIYVRNVNCPGINHPEGVPI
Sbjct: 121 YLEIYVRNVNCPGINHPEGVPI 142
>pir||F71176 hypothetical protein PH1693 - Pyrococcus horikoshii
>gi|3258122|dbj|BAA30805.1| (AP000007) 141aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 141
Score = 272 bits (689), Expect = 1e-72
Identities = 126/142 (88%), Positives = 133/142 (92%), Gaps = 1/142 (0%)
Query: 1 MEKERLLAKINLKTGELEVVDEDFRFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDY 60
ME E L+AKINLKTGELEV+ EDFRFKCLDNCG CCIENDIPLREEDIERIK LGYDEDY
Sbjct: 1 MEGE-LIAKINLKTGELEVIKEDFRFKCLDNCGKCCIENDIPLREEDIERIKKLGYDEDY 59
Query: 61 FVDFTKMVYRGPKFLGYAMKKRPFDDACVFLDPETKRCRIYEHRPLACRLYPFALVKHRD 120
FVDFTKMVYRGPKFLGY +KKRPFD+ACVFLDPETK+CRIYEHRPLACRLYPFALV+H D
Sbjct: 60 FVDFTKMVYRGPKFLGYTLKKRPFDNACVFLDPETKKCRIYEHRPLACRLYPFALVRHGD 119
Query: 121 YLEIYVRNVNCPGINHPEGVPI 142
LEIYVRNV+CPGINHPEGV I
Sbjct: 120 ELEIYVRNVDCPGINHPEGVTI 141
>gi|11499033 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483124|pir||E69429 conserved hypothetical protein
AF1438 - Archaeoglobus fulgidus
>gi|2649136|gb|AAB89813.1| (AE001004) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 127
Score = 73.0 bits (176), Expect = 2e-12
Identities = 43/98 (43%), Positives = 54/98 (54%), Gaps = 15/98 (15%)
Query: 28 CLDN---CGLCCIENDIPLREEDIERIKSLGYDEDYFVDFTKMVYRGPKFLGYAMKKRPF 84
C D CG CC E ++PL EEDI RI++LGY DFT G ++ R
Sbjct: 5 CFDGSSFCGKCCYETEMPLTEEDIARIEALGYSRS---DFTVKD-------GEIVRLRNV 54
Query: 85 DDACVFLDPETKRCRIYEHRPLACRLYPFALVKHRDYL 122
+ C FLD E RCRIY+HRP CR+YP A+ RD +
Sbjct: 55 NGKCFFLDSE-NRCRIYQHRPEGCRIYP-AVFDGRDVI 90
>pir||C71199 hypothetical protein PH1864 - Pyrococcus horikoshii
>gi|3258303|dbj|BAA30986.1| (AP000007) 170aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 170
Score = 72.2 bits (174), Expect = 3e-12
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 25 RFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDYFVDFTKMVYRGPKFLGYAMKKRPF 84
+FKC C CC + L DI+R+ GYD DF + K + + + R +
Sbjct: 16 KFKC-KFCLDCCKGRHVYLTLNDIKRLIDAGYDPQ---DFLTISIEDGK-IRFVLSVREW 70
Query: 85 DDACVFLDPETKRCRIYEHRPLACRLYPFAL------VKHRDYLEIYVRNV------NCP 132
D CVF DPET C+++ HRPL CR+YPF + +K EI ++ NCP
Sbjct: 71 DLGCVFQDPETGLCKVHPHRPLICRIYPFMVSKKPLGIKGEKKFEINGKSFWLYYDENCP 130
Query: 133 GINHPEG 139
GIN +G
Sbjct: 131 GINDEDG 137
>pir||B75159 hypothetical protein PAB2060 - Pyrococcus abyssi (strain Orsay)
>gi|5457863|emb|CAB49353.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 165
Score = 69.9 bits (168), Expect = 1e-11
Identities = 44/130 (33%), Positives = 64/130 (48%), Gaps = 17/130 (13%)
Query: 25 RFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDYFVDFTKMVYRGPKFLGYAMKKRPF 84
+FKC C CC + L +DI+R+ G D F+ + G K + + + R +
Sbjct: 13 KFKC-KFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTIS---IEGNK-IRFVLSVREW 67
Query: 85 DDACVFLDPETKRCRIYEHRPLACRLYPFAL------------VKHRDYLEIYVRNVNCP 132
D CVF DPET C ++ HRPL CR+YPF + ++ +D + NCP
Sbjct: 68 DLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWLYYDENCP 127
Query: 133 GINHPEGVPI 142
GIN+ EG I
Sbjct: 128 GINNKEGEEI 137
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.148 0.471
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59478282
Number of Sequences: 2977
Number of extensions: 2504320
Number of successful extensions: 5367
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5360
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 189,106,746
effective HSP length: 45
effective length of query: 97
effective length of database: 162,174,831
effective search space: 15730958607
effective search space used: 15730958607
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)