BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0322 (PAB0322) DE:LEUCINE-RESPONSIVE-REGULATORY PROTEIN
         (147 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro...   289  7e-78
pir||E71176 probable transcription regulator - Pyrococcus horiko...   264  4e-70
gi|11498748 transcriptional regulatory protein, AsnC family [Arc...   143  7e-34
pir||T45215 transcription regulator lrp [validated] - Sulfolobus...   143  9e-34
pir||B69026 transcription regulator - Methanobacterium thermoaut...   138  2e-32
gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus s...   125  2e-28
emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulat...   125  2e-28
pir||A75106 transcription regulatory protein, asnc family PAB193...   120  8e-27
pir||E71028 probable transcription regulator - Pyrococcus horiko...   116  9e-26
gb|AAG20239.1| (AE005099) transcription regulator; Trh4 [Halobac...   115  2e-25
gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (...   115  3e-25
sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT...    98  4e-20
pir||T46972 transcription regulator lrpA [validated] - Pyrococcu...    92  2e-18
pir||E75176 transcription regulatory protein, asnc Family PAB039...    92  2e-18
pir||H71037 probable transcription regulator - Pyrococcus horiko...    92  3e-18
pir||B71235 probable transcription regulator - Pyrococcus horiko...    91  5e-18
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu...    90  1e-17
gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]     89  2e-17
sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT...    88  5e-17
gb|AAC45745.1| (U42216) orf1; putative regulatory protein of Asn...    85  4e-16
emb|CAC12110.1| (AL445066) transcription regulator LrpA related ...    82  3e-15
dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus h...    80  1e-14
pir||G82367 transcription regulator AsnC VC0071 [imported] - Vib...    79  2e-14
sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN G...    78  3e-14
pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi ...    76  1e-13
pir||B71206 probable leucine-responsive regulatory protein - Pyr...    76  2e-13
pir||T36151 probable asnC-family transcription regulator - Strep...    76  2e-13
gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [B...    75  4e-13
pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii ...    75  4e-13
sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G6...    74  7e-13
pir||C83323 probable transcriptional regulator PA2577 [imported]...    73  1e-12
sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQEC...    72  3e-12
pir||B70883 probable transcription regulator Rv2779c - Mycobacte...    72  3e-12
pir||C75191 transcription regulatory protein or leucine-responsi...    72  3e-12
dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus h...    72  3e-12
gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobac...    71  5e-12
pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC...    71  6e-12
dbj|BAB04142.1| (AP001508) transcriptional regulator [Bacillus h...    70  1e-11
emb|CAC13071.1| (AL445503) putative asnC-family transcriptional ...    70  1e-11
pir||E82382 transcription regulator AsnC family VCA1068 [importe...    69  2e-11
emb|CAC11747.1| (AL445064) transcription regulator related prote...    69  2e-11
emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional ...    69  3e-11
pir||D82983 leucine-responsive regulatory protein PA5308 [import...    69  3e-11
sp|P54986|YBAO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN M...    68  7e-11
pir||G64774 regulatory protein b0447 - Escherichia coli >gi|1773...    68  7e-11
gi|11498085 transcriptional regulatory protein, AsnC family [Arc...    68  7e-11
gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC famil...    67  9e-11
pir||S74043 transcription regulator homolog c0107 - Sulfolobus s...    67  9e-11

>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
           (strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
           LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
           abyssi]
           Length = 147
           
 Score =  289 bits (733), Expect = 7e-78
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI
Sbjct: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
           GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG
Sbjct: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120

Query: 121 VLSIDGVEKTNTHVVLEVVKEDFRLEP 147
           VLSIDGVEKTNTHVVLEVVKEDFRLEP
Sbjct: 121 VLSIDGVEKTNTHVVLEVVKEDFRLEP 147


>pir||E71176 probable transcription regulator - Pyrococcus horikoshii
           >gi|3258121|dbj|BAA30804.1| (AP000007) 151aa long
           hypothetical transcriptional regulator [Pyrococcus
           horikoshii]
           Length = 151
           
 Score =  264 bits (667), Expect = 4e-70
 Identities = 131/146 (89%), Positives = 141/146 (95%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD LD+KI+ IL+KDSR SYREIAK+LNVAVGTIYNRIKKLE+SGVIQ FT+KLNYE+IG
Sbjct: 6   LDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYESIG 65

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           YDLTAI+GIKAQGKKIREIERIIAKDKRV CVYDVTGEYDIIVIAKF+NREDMNRFVKGV
Sbjct: 66  YDLTAIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFVKGV 125

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRLEP 147
           LSIDGVEKTNTHVVLE+VKEDFRLEP
Sbjct: 126 LSIDGVEKTNTHVVLEIVKEDFRLEP 151


>gi|11498748 transcriptional regulatory protein, AsnC family [Archaeoglobus
           fulgidus] >gi|7444108|pir||C69393 transcription
           regulator AsnC family homolog - Archaeoglobus fulgidus
           >gi|2649438|gb|AAB90095.1| (AE001024) transcriptional
           regulatory protein, AsnC family [Archaeoglobus fulgidus]
           Length = 149
           
 Score =  143 bits (358), Expect = 7e-34
 Identities = 72/140 (51%), Positives = 103/140 (73%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DE+D KI+  L  D+R S +EI++++ VA GT+YNRI K+ + G+I+ F   ++Y  +G
Sbjct: 4   IDEVDIKILRELQDDARKSLKEISEKVGVAEGTVYNRINKMRKIGLIKKFIPVVDYSMLG 63

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           YDL AI+GI A+G  + EIE+ IAK++ V  VYDVTG+YDIIV+AKFK+R+ +N FVK +
Sbjct: 64  YDLIAIIGITAEGGYLTEIEKEIAKERNVTAVYDVTGDYDIIVVAKFKDRDSLNAFVKRI 123

Query: 122 LSIDGVEKTNTHVVLEVVKE 141
             +D V KT T +VL VVKE
Sbjct: 124 AGMDKVLKTYTMLVLNVVKE 143


>pir||T45215 transcription regulator lrp [validated] - Sulfolobus acidocaldarius
           >gi|2760520|emb|CAA73351.1| (Y12821)
           leucine-responsive-regulatory protein [Sulfolobus
           acidocaldarius]
           Length = 155
           
 Score =  143 bits (357), Expect = 9e-34
 Identities = 66/145 (45%), Positives = 106/145 (72%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D +DKK++  L+KDSRIS R +A+E+NV+  T++NR+ +L + GV++GFT  ++Y  +G
Sbjct: 9   IDAIDKKLLIELLKDSRISLRRLAEEMNVSPATLHNRLMRLVQEGVVKGFTALIDYSKLG 68

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           Y +T+I+ IK  GK I E E+ ++    V+ VYDV GEYD+++IAKF++ ED++ F+K +
Sbjct: 69  YPVTSILMIKVDGKHILEFEKEVSNLDNVVAVYDVVGEYDVMLIAKFRSIEDLDTFIKSL 128

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRLE 146
           L    +E+T T +VL VVKED R++
Sbjct: 129 LKNPKIERTYTSIVLNVVKEDPRIK 153


>pir||B69026 transcription regulator - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622301|gb|AAB85682.1| (AE000887)
           transcriptional regulator [Methanobacterium
           thermoautotrophicum]
           Length = 161
           
 Score =  138 bits (345), Expect = 2e-32
 Identities = 65/141 (46%), Positives = 103/141 (72%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D++D+KII +L +D R+SYR I++ L+V+VGT++NR++KL + GVI+ F   +++  +G
Sbjct: 12  IDDIDRKIIDLLNEDGRMSYRNISRILDVSVGTVHNRVEKLVKKGVIKKFVPIIDHSKLG 71

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           Y LTAI+G+K +G  +R  E   A  K V+ VYDVTGE+D I+I KF++  +++ F+KG+
Sbjct: 72  YKLTAIIGVKVKGGVLRNWETRTAYHKNVLAVYDVTGEFDAILIGKFRDTGELDSFIKGL 131

Query: 122 LSIDGVEKTNTHVVLEVVKED 142
           LS   V++T T  VL +VKED
Sbjct: 132 LSEGDVQRTYTQTVLNIVKED 152


>gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus solfataricus]
           Length = 157
           
 Score =  125 bits (312), Expect = 2e-28
 Identities = 59/144 (40%), Positives = 98/144 (67%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD +D++++  L +D+R S R +A+E+NV+  T++NR+ ++ + G+I+ F   L+Y  +G
Sbjct: 11  LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           + LT I+  K  GK + E E+ IA    V  VYDV GEYD+++IAKF++ E+++ F+K +
Sbjct: 71  FALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQL 130

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
           L    +E+T T +VL VVKED R+
Sbjct: 131 LKNPKIERTYTSIVLNVVKEDPRI 154


>emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulatory protein)
           [Sulfolobus solfataricus]
           Length = 157
           
 Score =  125 bits (312), Expect = 2e-28
 Identities = 59/144 (40%), Positives = 98/144 (67%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD +D++++  L +D+R S R +A+E+NV+  T++NR+ ++ + G+I+ F   L+Y  +G
Sbjct: 11  LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           + LT I+  K  GK + E E+ IA    V  VYDV GEYD+++IAKF++ E+++ F+K +
Sbjct: 71  FALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQL 130

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
           L    +E+T T +VL VVKED R+
Sbjct: 131 LKNPKIERTYTSIVLNVVKEDPRI 154


>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
           abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
           (AJ248285) transcriptional regulatory protein, AsnC
           family [Pyrococcus abyssi]
           Length = 151
           
 Score =  120 bits (298), Expect = 8e-27
 Identities = 64/144 (44%), Positives = 93/144 (64%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LDE+D++II IL KD +   REI+K   +A  TI+ RIKKL ESGVI+ FT  +N E +G
Sbjct: 5   LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           Y + A + IK +  K  E+   + K + +M VY+ TG+YD++V  + KN E++N F+  +
Sbjct: 65  YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
            SI GVE T+T +VL+  KE   L
Sbjct: 125 GSIPGVEGTHTMIVLKTHKETTEL 148


>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
           >gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
           hypothetical transcriptional regulator [Pyrococcus
           horikoshii]
           Length = 151
           
 Score =  116 bits (289), Expect = 9e-26
 Identities = 62/144 (43%), Positives = 92/144 (63%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LDE+DKKII IL  D +   REI+K   +A  TI+ RI+KL ESGVI+ FT  ++ E +G
Sbjct: 5   LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           Y + A + +K +  K  E+   +AK   ++ VY+ TG+YD++V  + KN E++N F+  +
Sbjct: 65  YSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLI 124

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
            SI GVE T+T +VL+  KE   L
Sbjct: 125 GSIPGVEGTHTMIVLKTHKETTEL 148


>gb|AAG20239.1| (AE005099) transcription regulator; Trh4 [Halobacterium sp. NRC-1]
           Length = 154
           
 Score =  115 bits (286), Expect = 2e-25
 Identities = 52/144 (36%), Positives = 93/144 (64%)

Query: 3   DELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIGY 62
           + LD K++  L+ D R S R +A +L+V+V T+ N ++ LE+ G + G+T  ++YE +GY
Sbjct: 4   ENLDVKLVNELLGDGRASLRSLADDLDVSVTTVSNHLQTLEDEGAVNGYTPVVDYERLGY 63

Query: 63  DLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGVL 122
           D+TAI+ +K  G  + EI   +   K+++ VY++TG+YD++ I KF + +DMN  +K +L
Sbjct: 64  DVTAILQLKVDGTALPEITGTLRGHKQMVSVYEITGDYDVLAIGKFTDTDDMNTLIKELL 123

Query: 123 SIDGVEKTNTHVVLEVVKEDFRLE 146
           +   + +++T VVL    E+ + E
Sbjct: 124 ADADINESSTSVVLNAAAENEQFE 147


>gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (asnC) [Sulfolobus
           solfataricus]
           Length = 153
           
 Score =  115 bits (285), Expect = 3e-25
 Identities = 58/145 (40%), Positives = 95/145 (65%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD++DKKI+ IL +DSRI +  +AK LN++  TIY RIK+L+E+GVI+GF  +++++ IG
Sbjct: 8   LDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIG 67

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
             + A + IKA  KK   I + + + K +  +YDVTGEY  ++  +   RED+ + +  +
Sbjct: 68  LSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVLDKI 127

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRLE 146
            ++DGV  T T +VL  +K+   L+
Sbjct: 128 GNMDGVTSTYTMLVLRSIKDKKELD 152


>sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0151
           >gi|2129315|pir||H64318 transcription regulator homolog
           - Methanococcus jannaschii >gi|1498922|gb|AAB98133.1|
           (U67472) transcriptional regulator, putative
           [Methanococcus jannaschii]
           Length = 148
           
 Score = 98.3 bits (241), Expect = 4e-20
 Identities = 49/146 (33%), Positives = 88/146 (59%), Gaps = 1/146 (0%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           MLD +D KI+ IL  ++R S+REI +EL ++ GT+ NR+K+L E G+I GF   +N +N+
Sbjct: 1   MLDRIDLKILRILNGNARKSFREIGRELGISEGTVRNRVKRLTEKGIITGFHASINPKNL 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-K 119
           G+++ AI+G+  +  K+ E    + +   ++ +Y  TGEYD + IA  K+ E + +F+ +
Sbjct: 61  GFEVVAILGLYIKPSKVEETLNKLKELDEIVELYQTTGEYDAVCIAILKDIESLGKFLAE 120

Query: 120 GVLSIDGVEKTNTHVVLEVVKEDFRL 145
            +  +  V      +VL   K+  ++
Sbjct: 121 KIYPLVNVNGCKVTLVLRTFKDGSKM 146


>pir||T46972 transcription regulator lrpA [validated] - Pyrococcus furiosus
           >gi|4416541|gb|AAD20389.1| (M97860) transcriptional
           regulator LrpA [Pyrococcus furiosus]
           Length = 141
           
 Score = 92.4 bits (226), Expect = 2e-18
 Identities = 48/141 (34%), Positives = 85/141 (60%), Gaps = 1/141 (0%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           M+DE DK I+ IL KD+R  + EIAK+L ++   +  R+K LEE G+I+G+T+K+N + +
Sbjct: 1   MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
           GY L  I G+  + +K+ E+   + +   V  +Y  +G++ I+ +   K+ ED+   +  
Sbjct: 61  GYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISN 120

Query: 121 VL-SIDGVEKTNTHVVLEVVK 140
            +  I+GV K    ++LE +K
Sbjct: 121 KIGKIEGVTKVCPAIILEKLK 141


>pir||E75176 transcription regulatory protein, asnc Family PAB0392 - Pyrococcus
           abyssi (strain Orsay) >gi|5458002|emb|CAB49492.1|
           (AJ248284) transcriptional regulatory protein, AsnC f
           amily [Pyrococcus abyssi]
           Length = 141
           
 Score = 92.4 bits (226), Expect = 2e-18
 Identities = 49/141 (34%), Positives = 85/141 (59%), Gaps = 1/141 (0%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           M+DE DK I+ IL KD+R  + EIAK L ++   +  R+K LEE G+I+G+T+K+N + +
Sbjct: 1   MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
           GY L  I G+  + +K+ E+   + + + V  +Y  +G++ I+ +   K+ ED+   +  
Sbjct: 61  GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120

Query: 121 VL-SIDGVEKTNTHVVLEVVK 140
            +  IDGV K    ++LE +K
Sbjct: 121 KIGKIDGVTKVCPAIILERLK 141


>pir||H71037 probable transcription regulator - Pyrococcus horikoshii
           >gi|3258021|dbj|BAA30704.1| (AP000006) 141aa long
           hypothetical transcriptional regulator [Pyrococcus
           horikoshii]
           Length = 141
           
 Score = 92.1 bits (225), Expect = 3e-18
 Identities = 47/141 (33%), Positives = 86/141 (60%), Gaps = 1/141 (0%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           M+DE DK I+ IL KD+R  + EIAK+L ++   +  R+K LEE G+I+G+T+++N + +
Sbjct: 1   MIDERDKIILEILSKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIRINPKKL 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
           GY L  I G+  + +K+ E+   + + + V  +Y  +G++ I+ +   ++ ED+   +  
Sbjct: 61  GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWARDGEDLADIISN 120

Query: 121 VL-SIDGVEKTNTHVVLEVVK 140
            +  IDGV K    ++LE +K
Sbjct: 121 KIGKIDGVTKVCPAIILEKLK 141


>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
           >gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
           hypothetical transcriptional regulator [Pyrococcus
           horikoshii]
           Length = 158
           
 Score = 91.3 bits (223), Expect = 5e-18
 Identities = 45/140 (32%), Positives = 84/140 (59%), Gaps = 1/140 (0%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LDE+D+ I+ +L +D R+SY EI++ +NV   T+  R+ +L + GVI+ F   +N    G
Sbjct: 12  LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKAG 71

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-KG 120
           Y++ A + + A+  K++++   +AK   V  +  VTG +DI +    K+ +++ RF+ + 
Sbjct: 72  YEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFILEK 131

Query: 121 VLSIDGVEKTNTHVVLEVVK 140
           +  IDG++ T T ++  V K
Sbjct: 132 MAKIDGIKSTETSILTSVKK 151


>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
           (strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
           transcriptional regulatory protein [Pyrococcus abyssi]
           Length = 158
           
 Score = 90.1 bits (220), Expect = 1e-17
 Identities = 46/140 (32%), Positives = 82/140 (57%), Gaps = 1/140 (0%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LDE+D+ I+ +L +D R+SY EI++ +NV   T+  R+ +L   GVI+ F   +N    G
Sbjct: 12  LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-KG 120
           Y++ A + I A+  K+R++   +AK   V  +  VTG +DI +    ++ +++ RF+ + 
Sbjct: 72  YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131

Query: 121 VLSIDGVEKTNTHVVLEVVK 140
           +  IDG+  T T ++  V K
Sbjct: 132 MAKIDGIRSTETSILTSVKK 151


>gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]
           Length = 142
           
 Score = 89.3 bits (218), Expect = 2e-17
 Identities = 54/136 (39%), Positives = 82/136 (59%), Gaps = 4/136 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DE D KI+ IL K++R  Y  IAKEL V+   I  RI+KL   G+I+ FT++   EN  
Sbjct: 6   IDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIEYELEN-- 63

Query: 62  YDLTAIMGIKAQGK-KIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
            ++ AI+ +++  +    EI + IAK   V  VY+ TG+YDI+VI +  N   +NR +  
Sbjct: 64  -EIRAIVMVQSTPQIPTPEISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINRTIDE 122

Query: 121 VLSIDGVEKTNTHVVL 136
           + SI GV  TN+ ++L
Sbjct: 123 IRSIQGVVGTNSTIIL 138


>sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0723
           >gi|2129220|pir||C64390 probable transcription regulator
           - Methanococcus jannaschii >gi|1591440|gb|AAB98719.1|
           (U67519) transcriptional regulatory protein, AsnC family
           [Methanococcus jannaschii]
           Length = 156
           
 Score = 87.8 bits (214), Expect = 5e-17
 Identities = 48/141 (34%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           ++DE D KII ILM+D R SY +IA+EL  +  +I  R+KKLEE GVI+G+T  ++   I
Sbjct: 16  IMDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKI 75

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-K 119
           GY++ A+ G   +  K   + + + K   V  V+  TG++ I+     K+ ++ +  +  
Sbjct: 76  GYNVVALTGFDTEPDKFLNVAKELCKFPEVKKVFTSTGDHMIMTEIWAKDGKEFSDLIFN 135

Query: 120 GVLSIDGVEKTNTHVVLEVVK 140
            +  I+G++K    ++LE +K
Sbjct: 136 KIGKIEGIKKICPAIILEQMK 156


>gb|AAC45745.1| (U42216) orf1; putative regulatory protein of AsnC-Lrp family
           [Rhodococcus erythropolis]
           Length = 170
           
 Score = 85.0 bits (207), Expect = 4e-16
 Identities = 40/135 (29%), Positives = 78/135 (57%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D+LD +++G+L KDSR+S  E+A  L VA  T+ +R+K++E +G++ GF   LN   +G
Sbjct: 4   IDKLDVQLLGLLSKDSRMSVAELANSLGVARNTVQSRMKRMESNGLLTGFRPNLNLPEVG 63

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
             + A +G++ +  KI  + R + +   V+ ++  TG  D++V         + +  + +
Sbjct: 64  IPIQAFVGLELEQGKISAVARSLTELPEVIEIHATTGREDLLVRVATSTHAALQKLAEQI 123

Query: 122 LSIDGVEKTNTHVVL 136
           +S+ GV  + T + L
Sbjct: 124 VSLPGVTHSTTTIAL 138


>emb|CAC12110.1| (AL445066) transcription regulator LrpA related protein
           [Thermoplasma acidophilum]
           Length = 132
           
 Score = 81.9 bits (199), Expect = 3e-15
 Identities = 46/138 (33%), Positives = 88/138 (63%), Gaps = 8/138 (5%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           ++D+ D+ I+ +L+ ++RIS  EIAK LNV+ GT+  RIKK+ + G+I+ FT++ + + I
Sbjct: 2   VVDQKDRDILNLLVDNARISNTEIAKVLNVSEGTVRKRIKKMMDDGIIKRFTVETSDDTI 61

Query: 61  GYDLTAIMGIKAQGKKIRE-IERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVK 119
                A++ +K   K+ R+ ++RI ++ +    VY+ TG+ D+ +  +  + +++NR V 
Sbjct: 62  ----DALVLVKIDNKRYRDALQRIKSRFRE---VYEFTGKIDVAIRIRTDSTDNLNRIVD 114

Query: 120 GVLSIDGVEKTNTHVVLE 137
            +  IDGV  T+T + L+
Sbjct: 115 QIREIDGVLDTDTLIRLQ 132


>dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus halodurans]
           Length = 152
           
 Score = 80.0 bits (194), Expect = 1e-14
 Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 2/143 (1%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD++D  I+ +L  + + SY +IAK +NV+ GT+  RI ++ +  V + F + ++   IG
Sbjct: 4   LDDVDMSILQLLQDNGKRSYTDIAKRINVSEGTVRTRINRMLKERVFE-FIIHMDPNKIG 62

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
            ++ AI+GIK Q  K   I   + +   V  V   +G +D+I+ A FKN ED+  FV   
Sbjct: 63  LNVQAIIGIKTQLGKQETIATKLNEYPEVRFVGAFSGRHDLILQAYFKNNEDLVNFVNKE 122

Query: 122 LS-IDGVEKTNTHVVLEVVKEDF 143
           LS IDG+   +  + L+  K+ F
Sbjct: 123 LSKIDGILAADVSIELKQYKDSF 145


>pir||G82367 transcription regulator AsnC VC0071 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9654467|gb|AAF93249.1|
           (AE004098) transcriptional regulator AsnC [Vibrio
           cholerae]
           Length = 153
           
 Score = 79.2 bits (192), Expect = 2e-14
 Identities = 48/140 (34%), Positives = 80/140 (56%), Gaps = 6/140 (4%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LDELD+ I+ ILM D+R  Y E+AK+ NV+  TI+ RI+K++ + +IQG  + +N + +G
Sbjct: 7   LDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRIEKMKAADIIQGTEVVVNTKKLG 66

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDK---RVMCVYDVTGEYDIIVIAKFKNREDMNR-F 117
           YD+   +GI       R+    +AK      V+  Y  TG Y+I V    ++ E++    
Sbjct: 67  YDVCCFIGINLNA--ARDYHSALAKLNALDEVVEAYYTTGAYNIFVKLMCRSIEELQHVL 124

Query: 118 VKGVLSIDGVEKTNTHVVLE 137
           +  + +ID V+ T T + L+
Sbjct: 125 IDKLQAIDEVQSTETLISLQ 144


>sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GDH 3'REGION
           Length = 120
           
 Score = 78.4 bits (190), Expect = 3e-14
 Identities = 38/103 (36%), Positives = 66/103 (63%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           M+DE DK I+ IL KD+R  + EIAK+L ++   +  R+K LEE G+I+G+T+K+N + +
Sbjct: 1   MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDII 103
           GY L  I G+  + +K+ E+   + +   V  +Y  +G++ I+
Sbjct: 61  GYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIM 103


>pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi (strain Orsay)
           >gi|5459110|emb|CAB50596.1| (AJ248288) TRANSCRIPTIONAL
           REGULATOR [Pyrococcus abyssi]
           Length = 150
           
 Score = 76.5 bits (185), Expect = 1e-13
 Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 4/146 (2%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           +LD++D++++  L  ++R +   ++K+L +   T++ RIK+L E G+I+ FT+K NY+ +
Sbjct: 4   ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63

Query: 61  GYDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
               TA + I+     G   R++   IAK   V  V+ + GE+D+++  +  N E++ R 
Sbjct: 64  NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123

Query: 118 VKGVL-SIDGVEKTNTHVVLEVVKED 142
           V   L  I GV +T T V  + VKE+
Sbjct: 124 VIDKLREIRGVGQTVTMVSFDTVKEE 149


>pir||B71206 probable leucine-responsive regulatory protein - Pyrococcus
           horikoshii >gi|3258358|dbj|BAA31041.1| (AP000007) 150aa
           long hypothetical leucine-responsive regulatory protein
           [Pyrococcus horikoshii]
           Length = 150
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 48/146 (32%), Positives = 84/146 (56%), Gaps = 4/146 (2%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           +LD++D++++  L  ++R +   ++K+L +   T++ RIK+L E G+I+ FT+K NY+ +
Sbjct: 4   ILDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFTIKPNYKKL 63

Query: 61  GYDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
               TA + I+     G   RE+   IA+   V  V+ V GE+D+++  +  N E++ R 
Sbjct: 64  NLGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEIGRI 123

Query: 118 VKGVL-SIDGVEKTNTHVVLEVVKED 142
           V   L  I GV +T T V    VKE+
Sbjct: 124 VIDKLREIRGVGQTVTMVSFVTVKEE 149


>pir||T36151 probable asnC-family transcription regulator - Streptomyces
           coelicolor >gi|5531377|emb|CAB51009.1| (AL096852)
           putative asnC-family transcriptional regulator
           [Streptomyces coelicolor A3(2)]
           Length = 163
           
 Score = 75.7 bits (183), Expect = 2e-13
 Identities = 39/136 (28%), Positives = 78/136 (56%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D LD +IIG+L ++ RI   E+++ L VA GT   R+ +L+ +GVI+GF  +++   +G
Sbjct: 6   IDRLDGRIIGLLAREPRIGVLEMSRRLGVARGTAQARLDRLQSNGVIRGFGPEVDPAALG 65

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           Y +TA   ++ +  +  ++   +A    V+ ++  TG  D++     ++  D+ R +  V
Sbjct: 66  YPVTAFATLEIRQGQGADVRAHLATVPEVLELHTTTGTGDMLCRLVARSNADLQRVIDRV 125

Query: 122 LSIDGVEKTNTHVVLE 137
           +  DG+ +  T +V+E
Sbjct: 126 VGFDGIVRAATAIVME 141


>gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [Bradyrhizobium
           japonicum]
           Length = 153
           
 Score = 74.9 bits (181), Expect = 4e-13
 Identities = 42/145 (28%), Positives = 78/145 (52%), Gaps = 4/145 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD LD++I+ IL +D RI+  E+A+ + ++  +I  R+K+L+  G ++G+  +LN   +G
Sbjct: 3   LDRLDRRILSILQEDGRIANVELAERIGLSPTSIGERLKRLQREGFVEGYGARLNPHRLG 62

Query: 62  YDLTAIMGI---KAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
             L   + +   K          R +     V+  + V G +D +V A+  +     RF+
Sbjct: 63  LGLLVFVEVLLDKTTPDNFERFARAVKLAPEVLECHMVAGGFDYLVKARLADMTAYRRFL 122

Query: 119 -KGVLSIDGVEKTNTHVVLEVVKED 142
            + +LS+ GV +T T+ V+E +K D
Sbjct: 123 GETLLSMPGVRETRTYAVMEEIKRD 147


>pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii
           >gi|3256430|dbj|BAA29113.1| (AP000001) 155aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 155
           
 Score = 74.9 bits (181), Expect = 4e-13
 Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 6/146 (4%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DE+D+ I+  L K+SRI+  E+ +++ +    + NRI+KLE+ GVI+G++  ++    G
Sbjct: 4   IDEIDEVIVRELRKNSRITLTELGRKVGLTASAVKNRIEKLEKLGVIKGYSAVVDPSFFG 63

Query: 62  YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
             LTA++ I+       ++ RI   I K + +  VY  TGE+ +++   F++ E +N F+
Sbjct: 64  EFLTAVIEIELIDPDSPDLPRILTPILKMRNISDVYKKTGEFHLVIRGTFRDVESLNTFL 123

Query: 119 KGV---LSIDGVEKTNTHVVLEVVKE 141
           K +      +   +T   +VLE  KE
Sbjct: 124 KDLKRNYLRNLARRTRISIVLENFKE 149


>sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G64077 regulatory protein
           asnC - Haemophilus influenzae (strain Rd KW20)
           >gi|1573550|gb|AAC22221.1| (U32738) transcriptional
           regulatory protein (asnC) [Haemophilus influenzae Rd]
           Length = 150
           
 Score = 74.1 bits (179), Expect = 7e-13
 Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 6/140 (4%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D LD+KI+ +L KD+R  Y E+AK   V+ GTI+ R++K+ +SG+I+G  + ++   +G
Sbjct: 4   IDSLDQKILRVLTKDARTPYAEMAKNFGVSPGTIHVRVEKMRQSGIIKGTKVIIDERKLG 63

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDK---RVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
           YD+   +GI    K  ++ E++I K +    V+  Y  TG Y I +        +++  +
Sbjct: 64  YDVCCFIGIIL--KSAKDYEKVIKKLESFDEVVEAYYTTGNYSIFLKVMTHTIAELHSVL 121

Query: 119 KGVLS-IDGVEKTNTHVVLE 137
              +  ID ++ T T + ++
Sbjct: 122 ATKIQLIDEIQSTETLISMQ 141


>pir||C83323 probable transcriptional regulator PA2577 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9948639|gb|AAG05965.1|AE004686_3 (AE004686) probable
           transcriptional regulator [Pseudomonas aeruginosa]
           Length = 145
           
 Score = 73.4 bits (177), Expect = 1e-12
 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           M D++D+++I  LM DSR+S + +A+   ++  ++  R++KLEE GVI+G+TL ++    
Sbjct: 1   MTDDIDQRLINALMADSRLSLKALAQVSGLSAPSVAERLRKLEERGVIRGYTLDVDPRCF 60

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
           GY   AI+ I+    ++ E+ER I           VTG+   I   + ++ E ++  +  
Sbjct: 61  GYQFQAIVRIRPLPGRLHEVERQIQDIAEFTECDKVTGDDCFIARLQVRSMEQLDTLLD- 119

Query: 121 VLSIDGVEKTNTHVV 135
              I+G  +TNT +V
Sbjct: 120 --RINGYAETNTAIV 132


>sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQECE1 regulatory protein
           asnC - Escherichia coli >gi|290592|gb|AAA62095.1|
           (L10328) regulatory protein [Escherichia coli]
           >gi|455179|gb|AAA24252.1| (K00826) 17K protein
           [Escherichia coli] >gi|1790182|gb|AAC76766.1| (AE000451)
           regulator for asnA, asnC and gidA [Escherichia coli K12]
           >gi|223848|prf||1002215B protein 17KD [Escherichia coli]
           Length = 152
           
 Score = 72.2 bits (174), Expect = 3e-12
 Identities = 40/141 (28%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           ++D LD+ I+  LM ++R +Y E+AK+  V+ GTI+ R++K++++G+I G  + ++ + +
Sbjct: 5   LIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQL 64

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDK---RVMCVYDVTGEYDIIVIAKFKNREDMNR- 116
           GYD+   +GI    K  ++    +AK +    V   Y  TG Y I +    ++ + +   
Sbjct: 65  GYDVGCFIGIIL--KSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHV 122

Query: 117 FVKGVLSIDGVEKTNTHVVLE 137
            +  + +ID ++ T T +VL+
Sbjct: 123 LINKIQTIDEIQSTETLIVLQ 143


>pir||B70883 probable transcription regulator Rv2779c - Mycobacterium
           tuberculosis (strain H37RV) >gi|2624301|emb|CAA15574.1|
           (AL008967) hypothetical protein Rv2779c [Mycobacterium
           tuberculosis]
           Length = 171
           
 Score = 71.8 bits (173), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 77/140 (54%), Gaps = 4/140 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LDE+D++I+ +L  D+R+    +A  + +A  T + R+++L + GVI+GF   ++   +G
Sbjct: 24  LDEVDRRILSLLHGDARMPNNALADTVGIAPSTCHGRVRRLVDLGVIRGFYTDIDPVAVG 83

Query: 62  YDLTAIMGIKAQGK---KIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
             L A++ +  Q     KIR   + I + ++VM VY + G  D I+    ++ ED+  FV
Sbjct: 84  LPLQAMISVNLQSSARGKIRSFIQQIRRKRQVMDVYFLAGADDFILHVAARDTEDLRSFV 143

Query: 119 KGVLSIDG-VEKTNTHVVLE 137
              L+ D  V  T T ++ E
Sbjct: 144 VENLNADADVAGTQTSLIFE 163


>pir||C75191 transcription regulatory protein or leucine-responsive-regulatory
           protein PAB2312 - Pyrococcus abyssi (strain Orsay)
           >gi|5457487|emb|CAB48978.1| (AJ248283) TRANSCRIPTIONAL
           REGULATORY PROTEIN or LEUCINE-RESPONSIVE-REGULATORY
           PROTEIN [Pyrococcus abyssi]
           Length = 155
           
 Score = 71.8 bits (173), Expect = 3e-12
 Identities = 40/146 (27%), Positives = 83/146 (56%), Gaps = 6/146 (4%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DE+D+ I+  L K+SRI+  E+ K++ +    + NRI+KLE+ GVI+G++  ++    G
Sbjct: 4   IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63

Query: 62  YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
             LTAI+ ++    +  ++ ++   I + + +  VY  +GE+ + +   F++ + +N F+
Sbjct: 64  EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123

Query: 119 KGVLSI---DGVEKTNTHVVLEVVKE 141
           K +  +   +   +    +VLE  KE
Sbjct: 124 KDLRKVYLKNLARRMRVSIVLENFKE 149


>dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus halodurans]
           Length = 149
           
 Score = 71.8 bits (173), Expect = 3e-12
 Identities = 36/140 (25%), Positives = 81/140 (57%), Gaps = 1/140 (0%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D  D+KI+ +L ++ R+SY +IAKEL ++   I  RI +L+E+GVI+ F++ +N + +G
Sbjct: 3   IDATDQKILELLTENGRMSYVDIAKELGLSRVAIRERIHQLKEAGVIEKFSVVINSDKVG 62

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
             ++A   +  +   + ++   +A++ +V   Y +TG   + +    ++ + +  F+   
Sbjct: 63  KKVSAFFEVDCEPTSLVKVAETLAENPKVASCYQMTGPSTLHMHVLVEDFDQLEYFINEE 122

Query: 122 L-SIDGVEKTNTHVVLEVVK 140
           L ++ G+ +  +H++L   K
Sbjct: 123 LYALQGITRVESHILLRRFK 142


>gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobacterium sp. NRC-1]
           Length = 149
           
 Score = 71.4 bits (172), Expect = 5e-12
 Identities = 39/137 (28%), Positives = 85/137 (61%), Gaps = 3/137 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +D+ D++I+  L  D+R  + EIA+E++++  T+++R+ +LEE+GVI+G+   ++ + +G
Sbjct: 3   VDDTDREILRALQADARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKAVG 62

Query: 62  YDLTAIMGIKA-QGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-K 119
              TA +G++  QG++   ++R+   +  V  V   TGE+D+I+    ++ + +   + +
Sbjct: 63  LGTTAFVGLRVEQGREDETLDRLTGIE-GVREVNLTTGEWDVILRLVAEDTDHLRALMFE 121

Query: 120 GVLSIDGVEKTNTHVVL 136
            +  +DG  ++ T VVL
Sbjct: 122 EIADMDGFARSQTMVVL 138


>pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC - Bacillus
           subtilis >gi|1929330|emb|CAB07798.1| (Z93767) similar to
           leucine regulatory protein, Lrp and AsnC protein that
           regulates expression of asnA gene which encodes
           asparagine synthetase A [Bacillus subtilis]
           >gi|2636136|emb|CAB15628.1| (Z99122) similar to
           transcriptional regulator (Lrp/AsnC family) [Bacillus
           subtilis]
           Length = 158
           
 Score = 71.0 bits (171), Expect = 6e-12
 Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 7/132 (5%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           +LDE DK+I+ IL ++ RISY ++ K ++++   +  RI +L E+GVI+ FT  +N   I
Sbjct: 11  VLDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFTAVINPAKI 70

Query: 61  GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF--- 117
           G  ++    ++ + + + E+   + ++  V  +Y +TG   + +   F N ++M  F   
Sbjct: 71  GIHVSVFFNVEVEPQFLEEVALKLEEEPAVTSLYHMTGPSKLHMHGIFTNDQEMEEFLTK 130

Query: 118 ----VKGVLSID 125
               ++GV+S+D
Sbjct: 131 RLYPLRGVVSVD 142


>dbj|BAB04142.1| (AP001508) transcriptional regulator [Bacillus halodurans]
           Length = 144
           
 Score = 70.2 bits (169), Expect = 1e-11
 Identities = 35/144 (24%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DE+DK+I+  LMKD RIS +E+  ++N++   +  R+K++E  G+I+ +T+ ++   +G
Sbjct: 3   IDEIDKQILNELMKDGRISMKELGTKINMSSPAVRERVKQMESYGIIKNYTVAIDLTKVG 62

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           Y ++ ++    +  +    ++++     V   + + G    ++ A     ED+++    +
Sbjct: 63  YPVSCLIEATVKHGEYSRFKQVVEGMNNVEFCHRIAGRACFMIKAYM---EDLSKVEAFI 119

Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
             +    +T THVVL  +  D  L
Sbjct: 120 EQLSPFAETVTHVVLSTLDTDMTL 143


>emb|CAC13071.1| (AL445503) putative asnC-family transcriptional regulatory protein
           [Streptomyces coelicolor A3(2)]
           Length = 158
           
 Score = 70.2 bits (169), Expect = 1e-11
 Identities = 38/135 (28%), Positives = 73/135 (53%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DELD +I+ +L++  R S RE A+ L +A GT+  R+ +LE  GVI G    L+   +G
Sbjct: 3   VDELDTRILRLLLEQPRTSVREYARLLGIARGTLQARLDRLERDGVITGTAPSLSPAALG 62

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
           + + A + I+     + E+   +A    ++  + +TG  D++     ++   +   V+ +
Sbjct: 63  HPVLAFVHIEVTQGHLDEVGEALAAVPEIVEAFSITGGGDLLTRVVARDNAHLEDVVQKL 122

Query: 122 LSIDGVEKTNTHVVL 136
           +S+ GV +T + V L
Sbjct: 123 ISLPGVVRTRSEVAL 137


>pir||E82382 transcription regulator AsnC family VCA1068 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9658514|gb|AAF96962.1| (AE004432) transcriptional
           regulator, AsnC family [Vibrio cholerae]
           Length = 160
           
 Score = 69.5 bits (167), Expect = 2e-11
 Identities = 41/150 (27%), Positives = 75/150 (49%), Gaps = 4/150 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD +D+ I+ IL    R+   E+AK +N+       R+K+LE+ G I+G+   L+   +G
Sbjct: 3   LDRVDRDILRILHAKGRLPVVELAKLVNLTTSPCSERVKRLEKEGYIRGYHADLDPGKLG 62

Query: 62  YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
            D+   + I+         ER    +A    +   Y ++G++D ++  + K+ +    F+
Sbjct: 63  LDVQVFIHIRLDQSSFSIFERFAHAVADIPEIEACYSLSGDFDTMIKVRVKDMKAYQAFM 122

Query: 119 KGVL-SIDGVEKTNTHVVLEVVKEDFRLEP 147
            G L S+ GV +T +  V+E  K  F + P
Sbjct: 123 SGKLGSLPGVIQTRSEFVIEEHKTSFGINP 152


>emb|CAC11747.1| (AL445064) transcription regulator related protein [Thermoplasma
           acidophilum]
           Length = 143
           
 Score = 69.1 bits (166), Expect = 2e-11
 Identities = 44/143 (30%), Positives = 79/143 (54%), Gaps = 4/143 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           +DE D +I+  LM+++R    ++++ L++   TIY R++ + +SG+I+ FT+  +Y+ +G
Sbjct: 1   MDEKDIQILNYLMENARDKISDMSRVLDIPRVTIYERMQNMIKSGIIKKFTIVPDYKALG 60

Query: 62  YDLTAIMGI---KAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
             + A + I      G   RE+   IA  K V  VY + GE+D+++  +  + E +  FV
Sbjct: 61  VPVVAFILIAYTPKDGLSQRELAAKIANFKDVENVYIIAGEWDLLIKVRESSTEAVGNFV 120

Query: 119 KGVL-SIDGVEKTNTHVVLEVVK 140
              L  + GVE+  T  V   VK
Sbjct: 121 LDKLREMPGVERAQTITVFSEVK 143


>emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional regulatory protein.
           [Streptomyces coelicolor A3(2)]
           Length = 165
           
 Score = 68.7 bits (165), Expect = 3e-11
 Identities = 38/141 (26%), Positives = 76/141 (52%), Gaps = 2/141 (1%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           ++ELD++I+ +L+KD R+SY ++ K   ++   ++ R+++LE+ GVI+G+   ++ E +G
Sbjct: 20  MEELDRQIVQLLVKDGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG 79

Query: 62  YDLTAIMGIKA-QGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
             +TA + +K        +I   +A    +   + V G+ + I+  +     ++   +  
Sbjct: 80  LPMTAFISVKPFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEELLAR 139

Query: 121 VLSIDGVEKTNTHVVLEVVKE 141
           V S+ GV  T T VVL    E
Sbjct: 140 VRSLAGV-STRTTVVLSTPYE 159


>pir||D82983 leucine-responsive regulatory protein PA5308 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9951624|gb|AAG08693.1|AE004943_9 (AE004943)
           leucine-responsive regulatory protein [Pseudomonas
           aeruginosa]
           Length = 162
           
 Score = 68.7 bits (165), Expect = 3e-11
 Identities = 38/148 (25%), Positives = 77/148 (51%), Gaps = 4/148 (2%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD++D+ I+ IL ++ RIS+ E+ + + ++      R+++LE  G+I G+  +LN +++ 
Sbjct: 11  LDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGYHARLNPQHLK 70

Query: 62  YDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
             L   + I      G    E  R + K   V+  + V+G +D +V A+        + +
Sbjct: 71  ASLLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARISEMASYRKLL 130

Query: 119 KGV-LSIDGVEKTNTHVVLEVVKEDFRL 145
             + L +  V ++ +++V+E VKE   L
Sbjct: 131 GDILLKLPHVRESKSYIVMEEVKESLDL 158


>sp|P54986|YBAO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN MDL-COF INTERGENIC REGION
           >gi|1580718|dbj|BAA11651.1| (D82943) YbaO [Escherichia
           coli]
           Length = 152
           
 Score = 67.5 bits (162), Expect = 7e-11
 Identities = 37/144 (25%), Positives = 77/144 (52%), Gaps = 4/144 (2%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           MLD++D+K++ +L +D  +S + +A+ +N+     + R+K+LE+ G++ G    L+ E I
Sbjct: 1   MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKI 60

Query: 61  GYDLTAIMGIKAQGKKIR---EIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
           G  LTA + IK Q            ++ +   V+  + + GEYD ++  +  + +  + F
Sbjct: 61  GLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEF 120

Query: 118 VKGVL-SIDGVEKTNTHVVLEVVK 140
            K ++ S+ G+    +   +E +K
Sbjct: 121 YKRLVNSVPGLSDVTSSFAMEQIK 144


>pir||G64774 regulatory protein b0447 - Escherichia coli
           >gi|1773131|gb|AAB40203.1| (U82664) similar to Z.
           mobilis glutamate uptake regulatory protein [Escherichia
           coli] >gi|1786652|gb|AAC73550.1| (AE000151) putative
           LRP-like transcriptional regulator [Escherichia coli
           K12]
           Length = 181
           
 Score = 67.5 bits (162), Expect = 7e-11
 Identities = 37/144 (25%), Positives = 77/144 (52%), Gaps = 4/144 (2%)

Query: 1   MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
           MLD++D+K++ +L +D  +S + +A+ +N+     + R+K+LE+ G++ G    L+ E I
Sbjct: 30  MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKI 89

Query: 61  GYDLTAIMGIKAQGKKIR---EIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
           G  LTA + IK Q            ++ +   V+  + + GEYD ++  +  + +  + F
Sbjct: 90  GLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEF 149

Query: 118 VKGVL-SIDGVEKTNTHVVLEVVK 140
            K ++ S+ G+    +   +E +K
Sbjct: 150 YKRLVNSVPGLSDVTSSFAMEQIK 173


>gi|11498085 transcriptional regulatory protein, AsnC family [Archaeoglobus
          fulgidus] >gi|7429085|pir||B69309 transcription
          regulator AsnC family homolog - Archaeoglobus fulgidus
          >gi|2650151|gb|AAB90762.1| (AE001071) transcriptional
          regulatory protein, AsnC family [Archaeoglobus
          fulgidus]
          Length = 180
          
 Score = 67.5 bits (162), Expect = 7e-11
 Identities = 37/85 (43%), Positives = 57/85 (66%), Gaps = 3/85 (3%)

Query: 2  LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKL--NYEN 59
          LDE+D KII IL  +SR+S  EIAK LN++  T+  RI++LE  GVI+G+T+KL  ++EN
Sbjct: 3  LDEVDLKIINILKANSRVSITEIAKALNLSRQTVKARIERLENEGVIEGYTIKLASSFEN 62

Query: 60 IGYDLTAIMGIKAQGKKIREIERII 84
          +G     ++      +KI E+E ++
Sbjct: 63 LG-SSAYLLANTEDAEKILEMEEVV 86


>gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC family) [Sulfolobus
           solfataricus]
           Length = 155
           
 Score = 67.1 bits (161), Expect = 9e-11
 Identities = 36/142 (25%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD+ D+KI+ IL  +++ S +E++ EL + + T+  RIK+LE++ +I+G+   ++  N+G
Sbjct: 9   LDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLG 68

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
            +++ +M I+     I+++ + + +   V+ +Y +     + V   FK+    ++F+   
Sbjct: 69  LNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANK 128

Query: 122 L-SIDGVEKTNTHVVLEVVKED 142
           L +I G++  +   ++E  K D
Sbjct: 129 LYNIKGIKTVSISRIIERYKID 150


>pir||S74043 transcription regulator homolog c0107 - Sulfolobus solfataricus
           >gi|1707737|emb|CAA69457.1| (Y08256) orf c01007
           [Sulfolobus solfataricus]
           Length = 155
           
 Score = 67.1 bits (161), Expect = 9e-11
 Identities = 36/142 (25%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 2   LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
           LD+ D+KI+ IL  +++ S +E++ EL + + T+  RIK+LE++ +I+G+   ++  N+G
Sbjct: 9   LDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLG 68

Query: 62  YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
            +++ +M I+     I+++ + + +   V+ +Y +     + V   FK+    ++F+   
Sbjct: 69  LNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANK 128

Query: 122 L-SIDGVEKTNTHVVLEVVKED 142
           L +I G++  +   ++E  K D
Sbjct: 129 LYNIKGIKTVSISRIIERYKID 150


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48234814
Number of Sequences: 2977
Number of extensions: 1810423
Number of successful extensions: 6245
Number of sequences better than 1.0e-10: 48
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6209
Number of HSP's gapped (non-prelim): 48
length of query: 147
length of database: 189,106,746
effective HSP length: 56
effective length of query: 91
effective length of database: 155,591,474
effective search space: 14158824134
effective search space used: 14158824134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)