BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0322 (PAB0322) DE:LEUCINE-RESPONSIVE-REGULATORY PROTEIN
(147 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro... 289 7e-78
pir||E71176 probable transcription regulator - Pyrococcus horiko... 264 4e-70
gi|11498748 transcriptional regulatory protein, AsnC family [Arc... 143 7e-34
pir||T45215 transcription regulator lrp [validated] - Sulfolobus... 143 9e-34
pir||B69026 transcription regulator - Methanobacterium thermoaut... 138 2e-32
gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus s... 125 2e-28
emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulat... 125 2e-28
pir||A75106 transcription regulatory protein, asnc family PAB193... 120 8e-27
pir||E71028 probable transcription regulator - Pyrococcus horiko... 116 9e-26
gb|AAG20239.1| (AE005099) transcription regulator; Trh4 [Halobac... 115 2e-25
gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (... 115 3e-25
sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 98 4e-20
pir||T46972 transcription regulator lrpA [validated] - Pyrococcu... 92 2e-18
pir||E75176 transcription regulatory protein, asnc Family PAB039... 92 2e-18
pir||H71037 probable transcription regulator - Pyrococcus horiko... 92 3e-18
pir||B71235 probable transcription regulator - Pyrococcus horiko... 91 5e-18
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu... 90 1e-17
gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus] 89 2e-17
sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 88 5e-17
gb|AAC45745.1| (U42216) orf1; putative regulatory protein of Asn... 85 4e-16
emb|CAC12110.1| (AL445066) transcription regulator LrpA related ... 82 3e-15
dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus h... 80 1e-14
pir||G82367 transcription regulator AsnC VC0071 [imported] - Vib... 79 2e-14
sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN G... 78 3e-14
pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi ... 76 1e-13
pir||B71206 probable leucine-responsive regulatory protein - Pyr... 76 2e-13
pir||T36151 probable asnC-family transcription regulator - Strep... 76 2e-13
gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [B... 75 4e-13
pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii ... 75 4e-13
sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G6... 74 7e-13
pir||C83323 probable transcriptional regulator PA2577 [imported]... 73 1e-12
sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQEC... 72 3e-12
pir||B70883 probable transcription regulator Rv2779c - Mycobacte... 72 3e-12
pir||C75191 transcription regulatory protein or leucine-responsi... 72 3e-12
dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus h... 72 3e-12
gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobac... 71 5e-12
pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC... 71 6e-12
dbj|BAB04142.1| (AP001508) transcriptional regulator [Bacillus h... 70 1e-11
emb|CAC13071.1| (AL445503) putative asnC-family transcriptional ... 70 1e-11
pir||E82382 transcription regulator AsnC family VCA1068 [importe... 69 2e-11
emb|CAC11747.1| (AL445064) transcription regulator related prote... 69 2e-11
emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional ... 69 3e-11
pir||D82983 leucine-responsive regulatory protein PA5308 [import... 69 3e-11
sp|P54986|YBAO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN M... 68 7e-11
pir||G64774 regulatory protein b0447 - Escherichia coli >gi|1773... 68 7e-11
gi|11498085 transcriptional regulatory protein, AsnC family [Arc... 68 7e-11
gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC famil... 67 9e-11
pir||S74043 transcription regulator homolog c0107 - Sulfolobus s... 67 9e-11
>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
(strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
abyssi]
Length = 147
Score = 289 bits (733), Expect = 7e-78
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI
Sbjct: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG
Sbjct: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
Query: 121 VLSIDGVEKTNTHVVLEVVKEDFRLEP 147
VLSIDGVEKTNTHVVLEVVKEDFRLEP
Sbjct: 121 VLSIDGVEKTNTHVVLEVVKEDFRLEP 147
>pir||E71176 probable transcription regulator - Pyrococcus horikoshii
>gi|3258121|dbj|BAA30804.1| (AP000007) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 264 bits (667), Expect = 4e-70
Identities = 131/146 (89%), Positives = 141/146 (95%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD LD+KI+ IL+KDSR SYREIAK+LNVAVGTIYNRIKKLE+SGVIQ FT+KLNYE+IG
Sbjct: 6 LDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYESIG 65
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
YDLTAI+GIKAQGKKIREIERIIAKDKRV CVYDVTGEYDIIVIAKF+NREDMNRFVKGV
Sbjct: 66 YDLTAIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFVKGV 125
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRLEP 147
LSIDGVEKTNTHVVLE+VKEDFRLEP
Sbjct: 126 LSIDGVEKTNTHVVLEIVKEDFRLEP 151
>gi|11498748 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444108|pir||C69393 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2649438|gb|AAB90095.1| (AE001024) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 149
Score = 143 bits (358), Expect = 7e-34
Identities = 72/140 (51%), Positives = 103/140 (73%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DE+D KI+ L D+R S +EI++++ VA GT+YNRI K+ + G+I+ F ++Y +G
Sbjct: 4 IDEVDIKILRELQDDARKSLKEISEKVGVAEGTVYNRINKMRKIGLIKKFIPVVDYSMLG 63
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
YDL AI+GI A+G + EIE+ IAK++ V VYDVTG+YDIIV+AKFK+R+ +N FVK +
Sbjct: 64 YDLIAIIGITAEGGYLTEIEKEIAKERNVTAVYDVTGDYDIIVVAKFKDRDSLNAFVKRI 123
Query: 122 LSIDGVEKTNTHVVLEVVKE 141
+D V KT T +VL VVKE
Sbjct: 124 AGMDKVLKTYTMLVLNVVKE 143
>pir||T45215 transcription regulator lrp [validated] - Sulfolobus acidocaldarius
>gi|2760520|emb|CAA73351.1| (Y12821)
leucine-responsive-regulatory protein [Sulfolobus
acidocaldarius]
Length = 155
Score = 143 bits (357), Expect = 9e-34
Identities = 66/145 (45%), Positives = 106/145 (72%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D +DKK++ L+KDSRIS R +A+E+NV+ T++NR+ +L + GV++GFT ++Y +G
Sbjct: 9 IDAIDKKLLIELLKDSRISLRRLAEEMNVSPATLHNRLMRLVQEGVVKGFTALIDYSKLG 68
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Y +T+I+ IK GK I E E+ ++ V+ VYDV GEYD+++IAKF++ ED++ F+K +
Sbjct: 69 YPVTSILMIKVDGKHILEFEKEVSNLDNVVAVYDVVGEYDVMLIAKFRSIEDLDTFIKSL 128
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRLE 146
L +E+T T +VL VVKED R++
Sbjct: 129 LKNPKIERTYTSIVLNVVKEDPRIK 153
>pir||B69026 transcription regulator - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622301|gb|AAB85682.1| (AE000887)
transcriptional regulator [Methanobacterium
thermoautotrophicum]
Length = 161
Score = 138 bits (345), Expect = 2e-32
Identities = 65/141 (46%), Positives = 103/141 (72%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D++D+KII +L +D R+SYR I++ L+V+VGT++NR++KL + GVI+ F +++ +G
Sbjct: 12 IDDIDRKIIDLLNEDGRMSYRNISRILDVSVGTVHNRVEKLVKKGVIKKFVPIIDHSKLG 71
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Y LTAI+G+K +G +R E A K V+ VYDVTGE+D I+I KF++ +++ F+KG+
Sbjct: 72 YKLTAIIGVKVKGGVLRNWETRTAYHKNVLAVYDVTGEFDAILIGKFRDTGELDSFIKGL 131
Query: 122 LSIDGVEKTNTHVVLEVVKED 142
LS V++T T VL +VKED
Sbjct: 132 LSEGDVQRTYTQTVLNIVKED 152
>gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus solfataricus]
Length = 157
Score = 125 bits (312), Expect = 2e-28
Identities = 59/144 (40%), Positives = 98/144 (67%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD +D++++ L +D+R S R +A+E+NV+ T++NR+ ++ + G+I+ F L+Y +G
Sbjct: 11 LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+ LT I+ K GK + E E+ IA V VYDV GEYD+++IAKF++ E+++ F+K +
Sbjct: 71 FALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQL 130
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
L +E+T T +VL VVKED R+
Sbjct: 131 LKNPKIERTYTSIVLNVVKEDPRI 154
>emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulatory protein)
[Sulfolobus solfataricus]
Length = 157
Score = 125 bits (312), Expect = 2e-28
Identities = 59/144 (40%), Positives = 98/144 (67%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD +D++++ L +D+R S R +A+E+NV+ T++NR+ ++ + G+I+ F L+Y +G
Sbjct: 11 LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+ LT I+ K GK + E E+ IA V VYDV GEYD+++IAKF++ E+++ F+K +
Sbjct: 71 FALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQL 130
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
L +E+T T +VL VVKED R+
Sbjct: 131 LKNPKIERTYTSIVLNVVKEDPRI 154
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 120 bits (298), Expect = 8e-27
Identities = 64/144 (44%), Positives = 93/144 (64%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LDE+D++II IL KD + REI+K +A TI+ RIKKL ESGVI+ FT +N E +G
Sbjct: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Y + A + IK + K E+ + K + +M VY+ TG+YD++V + KN E++N F+ +
Sbjct: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
SI GVE T+T +VL+ KE L
Sbjct: 125 GSIPGVEGTHTMIVLKTHKETTEL 148
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 116 bits (289), Expect = 9e-26
Identities = 62/144 (43%), Positives = 92/144 (63%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LDE+DKKII IL D + REI+K +A TI+ RI+KL ESGVI+ FT ++ E +G
Sbjct: 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Y + A + +K + K E+ +AK ++ VY+ TG+YD++V + KN E++N F+ +
Sbjct: 65 YSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLI 124
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
SI GVE T+T +VL+ KE L
Sbjct: 125 GSIPGVEGTHTMIVLKTHKETTEL 148
>gb|AAG20239.1| (AE005099) transcription regulator; Trh4 [Halobacterium sp. NRC-1]
Length = 154
Score = 115 bits (286), Expect = 2e-25
Identities = 52/144 (36%), Positives = 93/144 (64%)
Query: 3 DELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIGY 62
+ LD K++ L+ D R S R +A +L+V+V T+ N ++ LE+ G + G+T ++YE +GY
Sbjct: 4 ENLDVKLVNELLGDGRASLRSLADDLDVSVTTVSNHLQTLEDEGAVNGYTPVVDYERLGY 63
Query: 63 DLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGVL 122
D+TAI+ +K G + EI + K+++ VY++TG+YD++ I KF + +DMN +K +L
Sbjct: 64 DVTAILQLKVDGTALPEITGTLRGHKQMVSVYEITGDYDVLAIGKFTDTDDMNTLIKELL 123
Query: 123 SIDGVEKTNTHVVLEVVKEDFRLE 146
+ + +++T VVL E+ + E
Sbjct: 124 ADADINESSTSVVLNAAAENEQFE 147
>gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (asnC) [Sulfolobus
solfataricus]
Length = 153
Score = 115 bits (285), Expect = 3e-25
Identities = 58/145 (40%), Positives = 95/145 (65%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD++DKKI+ IL +DSRI + +AK LN++ TIY RIK+L+E+GVI+GF +++++ IG
Sbjct: 8 LDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIG 67
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+ A + IKA KK I + + + K + +YDVTGEY ++ + RED+ + + +
Sbjct: 68 LSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVLDKI 127
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRLE 146
++DGV T T +VL +K+ L+
Sbjct: 128 GNMDGVTSTYTMLVLRSIKDKKELD 152
>sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0151
>gi|2129315|pir||H64318 transcription regulator homolog
- Methanococcus jannaschii >gi|1498922|gb|AAB98133.1|
(U67472) transcriptional regulator, putative
[Methanococcus jannaschii]
Length = 148
Score = 98.3 bits (241), Expect = 4e-20
Identities = 49/146 (33%), Positives = 88/146 (59%), Gaps = 1/146 (0%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
MLD +D KI+ IL ++R S+REI +EL ++ GT+ NR+K+L E G+I GF +N +N+
Sbjct: 1 MLDRIDLKILRILNGNARKSFREIGRELGISEGTVRNRVKRLTEKGIITGFHASINPKNL 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-K 119
G+++ AI+G+ + K+ E + + ++ +Y TGEYD + IA K+ E + +F+ +
Sbjct: 61 GFEVVAILGLYIKPSKVEETLNKLKELDEIVELYQTTGEYDAVCIAILKDIESLGKFLAE 120
Query: 120 GVLSIDGVEKTNTHVVLEVVKEDFRL 145
+ + V +VL K+ ++
Sbjct: 121 KIYPLVNVNGCKVTLVLRTFKDGSKM 146
>pir||T46972 transcription regulator lrpA [validated] - Pyrococcus furiosus
>gi|4416541|gb|AAD20389.1| (M97860) transcriptional
regulator LrpA [Pyrococcus furiosus]
Length = 141
Score = 92.4 bits (226), Expect = 2e-18
Identities = 48/141 (34%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
M+DE DK I+ IL KD+R + EIAK+L ++ + R+K LEE G+I+G+T+K+N + +
Sbjct: 1 MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
GY L I G+ + +K+ E+ + + V +Y +G++ I+ + K+ ED+ +
Sbjct: 61 GYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISN 120
Query: 121 VL-SIDGVEKTNTHVVLEVVK 140
+ I+GV K ++LE +K
Sbjct: 121 KIGKIEGVTKVCPAIILEKLK 141
>pir||E75176 transcription regulatory protein, asnc Family PAB0392 - Pyrococcus
abyssi (strain Orsay) >gi|5458002|emb|CAB49492.1|
(AJ248284) transcriptional regulatory protein, AsnC f
amily [Pyrococcus abyssi]
Length = 141
Score = 92.4 bits (226), Expect = 2e-18
Identities = 49/141 (34%), Positives = 85/141 (59%), Gaps = 1/141 (0%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
M+DE DK I+ IL KD+R + EIAK L ++ + R+K LEE G+I+G+T+K+N + +
Sbjct: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
GY L I G+ + +K+ E+ + + + V +Y +G++ I+ + K+ ED+ +
Sbjct: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
Query: 121 VL-SIDGVEKTNTHVVLEVVK 140
+ IDGV K ++LE +K
Sbjct: 121 KIGKIDGVTKVCPAIILERLK 141
>pir||H71037 probable transcription regulator - Pyrococcus horikoshii
>gi|3258021|dbj|BAA30704.1| (AP000006) 141aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 141
Score = 92.1 bits (225), Expect = 3e-18
Identities = 47/141 (33%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
M+DE DK I+ IL KD+R + EIAK+L ++ + R+K LEE G+I+G+T+++N + +
Sbjct: 1 MIDERDKIILEILSKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIRINPKKL 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
GY L I G+ + +K+ E+ + + + V +Y +G++ I+ + ++ ED+ +
Sbjct: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWARDGEDLADIISN 120
Query: 121 VL-SIDGVEKTNTHVVLEVVK 140
+ IDGV K ++LE +K
Sbjct: 121 KIGKIDGVTKVCPAIILEKLK 141
>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
>gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 158
Score = 91.3 bits (223), Expect = 5e-18
Identities = 45/140 (32%), Positives = 84/140 (59%), Gaps = 1/140 (0%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LDE+D+ I+ +L +D R+SY EI++ +NV T+ R+ +L + GVI+ F +N G
Sbjct: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKAG 71
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-KG 120
Y++ A + + A+ K++++ +AK V + VTG +DI + K+ +++ RF+ +
Sbjct: 72 YEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFILEK 131
Query: 121 VLSIDGVEKTNTHVVLEVVK 140
+ IDG++ T T ++ V K
Sbjct: 132 MAKIDGIKSTETSILTSVKK 151
>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
(strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
transcriptional regulatory protein [Pyrococcus abyssi]
Length = 158
Score = 90.1 bits (220), Expect = 1e-17
Identities = 46/140 (32%), Positives = 82/140 (57%), Gaps = 1/140 (0%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LDE+D+ I+ +L +D R+SY EI++ +NV T+ R+ +L GVI+ F +N G
Sbjct: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-KG 120
Y++ A + I A+ K+R++ +AK V + VTG +DI + ++ +++ RF+ +
Sbjct: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Query: 121 VLSIDGVEKTNTHVVLEVVK 140
+ IDG+ T T ++ V K
Sbjct: 132 MAKIDGIRSTETSILTSVKK 151
>gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]
Length = 142
Score = 89.3 bits (218), Expect = 2e-17
Identities = 54/136 (39%), Positives = 82/136 (59%), Gaps = 4/136 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DE D KI+ IL K++R Y IAKEL V+ I RI+KL G+I+ FT++ EN
Sbjct: 6 IDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIEYELEN-- 63
Query: 62 YDLTAIMGIKAQGK-KIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
++ AI+ +++ + EI + IAK V VY+ TG+YDI+VI + N +NR +
Sbjct: 64 -EIRAIVMVQSTPQIPTPEISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINRTIDE 122
Query: 121 VLSIDGVEKTNTHVVL 136
+ SI GV TN+ ++L
Sbjct: 123 IRSIQGVVGTNSTIIL 138
>sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0723
>gi|2129220|pir||C64390 probable transcription regulator
- Methanococcus jannaschii >gi|1591440|gb|AAB98719.1|
(U67519) transcriptional regulatory protein, AsnC family
[Methanococcus jannaschii]
Length = 156
Score = 87.8 bits (214), Expect = 5e-17
Identities = 48/141 (34%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
++DE D KII ILM+D R SY +IA+EL + +I R+KKLEE GVI+G+T ++ I
Sbjct: 16 IMDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKI 75
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-K 119
GY++ A+ G + K + + + K V V+ TG++ I+ K+ ++ + +
Sbjct: 76 GYNVVALTGFDTEPDKFLNVAKELCKFPEVKKVFTSTGDHMIMTEIWAKDGKEFSDLIFN 135
Query: 120 GVLSIDGVEKTNTHVVLEVVK 140
+ I+G++K ++LE +K
Sbjct: 136 KIGKIEGIKKICPAIILEQMK 156
>gb|AAC45745.1| (U42216) orf1; putative regulatory protein of AsnC-Lrp family
[Rhodococcus erythropolis]
Length = 170
Score = 85.0 bits (207), Expect = 4e-16
Identities = 40/135 (29%), Positives = 78/135 (57%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D+LD +++G+L KDSR+S E+A L VA T+ +R+K++E +G++ GF LN +G
Sbjct: 4 IDKLDVQLLGLLSKDSRMSVAELANSLGVARNTVQSRMKRMESNGLLTGFRPNLNLPEVG 63
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+ A +G++ + KI + R + + V+ ++ TG D++V + + + +
Sbjct: 64 IPIQAFVGLELEQGKISAVARSLTELPEVIEIHATTGREDLLVRVATSTHAALQKLAEQI 123
Query: 122 LSIDGVEKTNTHVVL 136
+S+ GV + T + L
Sbjct: 124 VSLPGVTHSTTTIAL 138
>emb|CAC12110.1| (AL445066) transcription regulator LrpA related protein
[Thermoplasma acidophilum]
Length = 132
Score = 81.9 bits (199), Expect = 3e-15
Identities = 46/138 (33%), Positives = 88/138 (63%), Gaps = 8/138 (5%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
++D+ D+ I+ +L+ ++RIS EIAK LNV+ GT+ RIKK+ + G+I+ FT++ + + I
Sbjct: 2 VVDQKDRDILNLLVDNARISNTEIAKVLNVSEGTVRKRIKKMMDDGIIKRFTVETSDDTI 61
Query: 61 GYDLTAIMGIKAQGKKIRE-IERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVK 119
A++ +K K+ R+ ++RI ++ + VY+ TG+ D+ + + + +++NR V
Sbjct: 62 ----DALVLVKIDNKRYRDALQRIKSRFRE---VYEFTGKIDVAIRIRTDSTDNLNRIVD 114
Query: 120 GVLSIDGVEKTNTHVVLE 137
+ IDGV T+T + L+
Sbjct: 115 QIREIDGVLDTDTLIRLQ 132
>dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus halodurans]
Length = 152
Score = 80.0 bits (194), Expect = 1e-14
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD++D I+ +L + + SY +IAK +NV+ GT+ RI ++ + V + F + ++ IG
Sbjct: 4 LDDVDMSILQLLQDNGKRSYTDIAKRINVSEGTVRTRINRMLKERVFE-FIIHMDPNKIG 62
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
++ AI+GIK Q K I + + V V +G +D+I+ A FKN ED+ FV
Sbjct: 63 LNVQAIIGIKTQLGKQETIATKLNEYPEVRFVGAFSGRHDLILQAYFKNNEDLVNFVNKE 122
Query: 122 LS-IDGVEKTNTHVVLEVVKEDF 143
LS IDG+ + + L+ K+ F
Sbjct: 123 LSKIDGILAADVSIELKQYKDSF 145
>pir||G82367 transcription regulator AsnC VC0071 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654467|gb|AAF93249.1|
(AE004098) transcriptional regulator AsnC [Vibrio
cholerae]
Length = 153
Score = 79.2 bits (192), Expect = 2e-14
Identities = 48/140 (34%), Positives = 80/140 (56%), Gaps = 6/140 (4%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LDELD+ I+ ILM D+R Y E+AK+ NV+ TI+ RI+K++ + +IQG + +N + +G
Sbjct: 7 LDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRIEKMKAADIIQGTEVVVNTKKLG 66
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDK---RVMCVYDVTGEYDIIVIAKFKNREDMNR-F 117
YD+ +GI R+ +AK V+ Y TG Y+I V ++ E++
Sbjct: 67 YDVCCFIGINLNA--ARDYHSALAKLNALDEVVEAYYTTGAYNIFVKLMCRSIEELQHVL 124
Query: 118 VKGVLSIDGVEKTNTHVVLE 137
+ + +ID V+ T T + L+
Sbjct: 125 IDKLQAIDEVQSTETLISLQ 144
>sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GDH 3'REGION
Length = 120
Score = 78.4 bits (190), Expect = 3e-14
Identities = 38/103 (36%), Positives = 66/103 (63%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
M+DE DK I+ IL KD+R + EIAK+L ++ + R+K LEE G+I+G+T+K+N + +
Sbjct: 1 MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDII 103
GY L I G+ + +K+ E+ + + V +Y +G++ I+
Sbjct: 61 GYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIM 103
>pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi (strain Orsay)
>gi|5459110|emb|CAB50596.1| (AJ248288) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 150
Score = 76.5 bits (185), Expect = 1e-13
Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
+LD++D++++ L ++R + ++K+L + T++ RIK+L E G+I+ FT+K NY+ +
Sbjct: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
Query: 61 GYDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
TA + I+ G R++ IAK V V+ + GE+D+++ + N E++ R
Sbjct: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
Query: 118 VKGVL-SIDGVEKTNTHVVLEVVKED 142
V L I GV +T T V + VKE+
Sbjct: 124 VIDKLREIRGVGQTVTMVSFDTVKEE 149
>pir||B71206 probable leucine-responsive regulatory protein - Pyrococcus
horikoshii >gi|3258358|dbj|BAA31041.1| (AP000007) 150aa
long hypothetical leucine-responsive regulatory protein
[Pyrococcus horikoshii]
Length = 150
Score = 76.1 bits (184), Expect = 2e-13
Identities = 48/146 (32%), Positives = 84/146 (56%), Gaps = 4/146 (2%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
+LD++D++++ L ++R + ++K+L + T++ RIK+L E G+I+ FT+K NY+ +
Sbjct: 4 ILDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFTIKPNYKKL 63
Query: 61 GYDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
TA + I+ G RE+ IA+ V V+ V GE+D+++ + N E++ R
Sbjct: 64 NLGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEIGRI 123
Query: 118 VKGVL-SIDGVEKTNTHVVLEVVKED 142
V L I GV +T T V VKE+
Sbjct: 124 VIDKLREIRGVGQTVTMVSFVTVKEE 149
>pir||T36151 probable asnC-family transcription regulator - Streptomyces
coelicolor >gi|5531377|emb|CAB51009.1| (AL096852)
putative asnC-family transcriptional regulator
[Streptomyces coelicolor A3(2)]
Length = 163
Score = 75.7 bits (183), Expect = 2e-13
Identities = 39/136 (28%), Positives = 78/136 (56%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D LD +IIG+L ++ RI E+++ L VA GT R+ +L+ +GVI+GF +++ +G
Sbjct: 6 IDRLDGRIIGLLAREPRIGVLEMSRRLGVARGTAQARLDRLQSNGVIRGFGPEVDPAALG 65
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Y +TA ++ + + ++ +A V+ ++ TG D++ ++ D+ R + V
Sbjct: 66 YPVTAFATLEIRQGQGADVRAHLATVPEVLELHTTTGTGDMLCRLVARSNADLQRVIDRV 125
Query: 122 LSIDGVEKTNTHVVLE 137
+ DG+ + T +V+E
Sbjct: 126 VGFDGIVRAATAIVME 141
>gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [Bradyrhizobium
japonicum]
Length = 153
Score = 74.9 bits (181), Expect = 4e-13
Identities = 42/145 (28%), Positives = 78/145 (52%), Gaps = 4/145 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD LD++I+ IL +D RI+ E+A+ + ++ +I R+K+L+ G ++G+ +LN +G
Sbjct: 3 LDRLDRRILSILQEDGRIANVELAERIGLSPTSIGERLKRLQREGFVEGYGARLNPHRLG 62
Query: 62 YDLTAIMGI---KAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
L + + K R + V+ + V G +D +V A+ + RF+
Sbjct: 63 LGLLVFVEVLLDKTTPDNFERFARAVKLAPEVLECHMVAGGFDYLVKARLADMTAYRRFL 122
Query: 119 -KGVLSIDGVEKTNTHVVLEVVKED 142
+ +LS+ GV +T T+ V+E +K D
Sbjct: 123 GETLLSMPGVRETRTYAVMEEIKRD 147
>pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii
>gi|3256430|dbj|BAA29113.1| (AP000001) 155aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 155
Score = 74.9 bits (181), Expect = 4e-13
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DE+D+ I+ L K+SRI+ E+ +++ + + NRI+KLE+ GVI+G++ ++ G
Sbjct: 4 IDEIDEVIVRELRKNSRITLTELGRKVGLTASAVKNRIEKLEKLGVIKGYSAVVDPSFFG 63
Query: 62 YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
LTA++ I+ ++ RI I K + + VY TGE+ +++ F++ E +N F+
Sbjct: 64 EFLTAVIEIELIDPDSPDLPRILTPILKMRNISDVYKKTGEFHLVIRGTFRDVESLNTFL 123
Query: 119 KGV---LSIDGVEKTNTHVVLEVVKE 141
K + + +T +VLE KE
Sbjct: 124 KDLKRNYLRNLARRTRISIVLENFKE 149
>sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G64077 regulatory protein
asnC - Haemophilus influenzae (strain Rd KW20)
>gi|1573550|gb|AAC22221.1| (U32738) transcriptional
regulatory protein (asnC) [Haemophilus influenzae Rd]
Length = 150
Score = 74.1 bits (179), Expect = 7e-13
Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D LD+KI+ +L KD+R Y E+AK V+ GTI+ R++K+ +SG+I+G + ++ +G
Sbjct: 4 IDSLDQKILRVLTKDARTPYAEMAKNFGVSPGTIHVRVEKMRQSGIIKGTKVIIDERKLG 63
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDK---RVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
YD+ +GI K ++ E++I K + V+ Y TG Y I + +++ +
Sbjct: 64 YDVCCFIGIIL--KSAKDYEKVIKKLESFDEVVEAYYTTGNYSIFLKVMTHTIAELHSVL 121
Query: 119 KGVLS-IDGVEKTNTHVVLE 137
+ ID ++ T T + ++
Sbjct: 122 ATKIQLIDEIQSTETLISMQ 141
>pir||C83323 probable transcriptional regulator PA2577 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948639|gb|AAG05965.1|AE004686_3 (AE004686) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 145
Score = 73.4 bits (177), Expect = 1e-12
Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
M D++D+++I LM DSR+S + +A+ ++ ++ R++KLEE GVI+G+TL ++
Sbjct: 1 MTDDIDQRLINALMADSRLSLKALAQVSGLSAPSVAERLRKLEERGVIRGYTLDVDPRCF 60
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
GY AI+ I+ ++ E+ER I VTG+ I + ++ E ++ +
Sbjct: 61 GYQFQAIVRIRPLPGRLHEVERQIQDIAEFTECDKVTGDDCFIARLQVRSMEQLDTLLD- 119
Query: 121 VLSIDGVEKTNTHVV 135
I+G +TNT +V
Sbjct: 120 --RINGYAETNTAIV 132
>sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQECE1 regulatory protein
asnC - Escherichia coli >gi|290592|gb|AAA62095.1|
(L10328) regulatory protein [Escherichia coli]
>gi|455179|gb|AAA24252.1| (K00826) 17K protein
[Escherichia coli] >gi|1790182|gb|AAC76766.1| (AE000451)
regulator for asnA, asnC and gidA [Escherichia coli K12]
>gi|223848|prf||1002215B protein 17KD [Escherichia coli]
Length = 152
Score = 72.2 bits (174), Expect = 3e-12
Identities = 40/141 (28%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
++D LD+ I+ LM ++R +Y E+AK+ V+ GTI+ R++K++++G+I G + ++ + +
Sbjct: 5 LIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQL 64
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDK---RVMCVYDVTGEYDIIVIAKFKNREDMNR- 116
GYD+ +GI K ++ +AK + V Y TG Y I + ++ + +
Sbjct: 65 GYDVGCFIGIIL--KSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHV 122
Query: 117 FVKGVLSIDGVEKTNTHVVLE 137
+ + +ID ++ T T +VL+
Sbjct: 123 LINKIQTIDEIQSTETLIVLQ 143
>pir||B70883 probable transcription regulator Rv2779c - Mycobacterium
tuberculosis (strain H37RV) >gi|2624301|emb|CAA15574.1|
(AL008967) hypothetical protein Rv2779c [Mycobacterium
tuberculosis]
Length = 171
Score = 71.8 bits (173), Expect = 3e-12
Identities = 43/140 (30%), Positives = 77/140 (54%), Gaps = 4/140 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LDE+D++I+ +L D+R+ +A + +A T + R+++L + GVI+GF ++ +G
Sbjct: 24 LDEVDRRILSLLHGDARMPNNALADTVGIAPSTCHGRVRRLVDLGVIRGFYTDIDPVAVG 83
Query: 62 YDLTAIMGIKAQGK---KIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
L A++ + Q KIR + I + ++VM VY + G D I+ ++ ED+ FV
Sbjct: 84 LPLQAMISVNLQSSARGKIRSFIQQIRRKRQVMDVYFLAGADDFILHVAARDTEDLRSFV 143
Query: 119 KGVLSIDG-VEKTNTHVVLE 137
L+ D V T T ++ E
Sbjct: 144 VENLNADADVAGTQTSLIFE 163
>pir||C75191 transcription regulatory protein or leucine-responsive-regulatory
protein PAB2312 - Pyrococcus abyssi (strain Orsay)
>gi|5457487|emb|CAB48978.1| (AJ248283) TRANSCRIPTIONAL
REGULATORY PROTEIN or LEUCINE-RESPONSIVE-REGULATORY
PROTEIN [Pyrococcus abyssi]
Length = 155
Score = 71.8 bits (173), Expect = 3e-12
Identities = 40/146 (27%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DE+D+ I+ L K+SRI+ E+ K++ + + NRI+KLE+ GVI+G++ ++ G
Sbjct: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
Query: 62 YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
LTAI+ ++ + ++ ++ I + + + VY +GE+ + + F++ + +N F+
Sbjct: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
Query: 119 KGVLSI---DGVEKTNTHVVLEVVKE 141
K + + + + +VLE KE
Sbjct: 124 KDLRKVYLKNLARRMRVSIVLENFKE 149
>dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus halodurans]
Length = 149
Score = 71.8 bits (173), Expect = 3e-12
Identities = 36/140 (25%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D D+KI+ +L ++ R+SY +IAKEL ++ I RI +L+E+GVI+ F++ +N + +G
Sbjct: 3 IDATDQKILELLTENGRMSYVDIAKELGLSRVAIRERIHQLKEAGVIEKFSVVINSDKVG 62
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
++A + + + ++ +A++ +V Y +TG + + ++ + + F+
Sbjct: 63 KKVSAFFEVDCEPTSLVKVAETLAENPKVASCYQMTGPSTLHMHVLVEDFDQLEYFINEE 122
Query: 122 L-SIDGVEKTNTHVVLEVVK 140
L ++ G+ + +H++L K
Sbjct: 123 LYALQGITRVESHILLRRFK 142
>gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobacterium sp. NRC-1]
Length = 149
Score = 71.4 bits (172), Expect = 5e-12
Identities = 39/137 (28%), Positives = 85/137 (61%), Gaps = 3/137 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+D+ D++I+ L D+R + EIA+E++++ T+++R+ +LEE+GVI+G+ ++ + +G
Sbjct: 3 VDDTDREILRALQADARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKAVG 62
Query: 62 YDLTAIMGIKA-QGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-K 119
TA +G++ QG++ ++R+ + V V TGE+D+I+ ++ + + + +
Sbjct: 63 LGTTAFVGLRVEQGREDETLDRLTGIE-GVREVNLTTGEWDVILRLVAEDTDHLRALMFE 121
Query: 120 GVLSIDGVEKTNTHVVL 136
+ +DG ++ T VVL
Sbjct: 122 EIADMDGFARSQTMVVL 138
>pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC - Bacillus
subtilis >gi|1929330|emb|CAB07798.1| (Z93767) similar to
leucine regulatory protein, Lrp and AsnC protein that
regulates expression of asnA gene which encodes
asparagine synthetase A [Bacillus subtilis]
>gi|2636136|emb|CAB15628.1| (Z99122) similar to
transcriptional regulator (Lrp/AsnC family) [Bacillus
subtilis]
Length = 158
Score = 71.0 bits (171), Expect = 6e-12
Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
+LDE DK+I+ IL ++ RISY ++ K ++++ + RI +L E+GVI+ FT +N I
Sbjct: 11 VLDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFTAVINPAKI 70
Query: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF--- 117
G ++ ++ + + + E+ + ++ V +Y +TG + + F N ++M F
Sbjct: 71 GIHVSVFFNVEVEPQFLEEVALKLEEEPAVTSLYHMTGPSKLHMHGIFTNDQEMEEFLTK 130
Query: 118 ----VKGVLSID 125
++GV+S+D
Sbjct: 131 RLYPLRGVVSVD 142
>dbj|BAB04142.1| (AP001508) transcriptional regulator [Bacillus halodurans]
Length = 144
Score = 70.2 bits (169), Expect = 1e-11
Identities = 35/144 (24%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DE+DK+I+ LMKD RIS +E+ ++N++ + R+K++E G+I+ +T+ ++ +G
Sbjct: 3 IDEIDKQILNELMKDGRISMKELGTKINMSSPAVRERVKQMESYGIIKNYTVAIDLTKVG 62
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Y ++ ++ + + ++++ V + + G ++ A ED+++ +
Sbjct: 63 YPVSCLIEATVKHGEYSRFKQVVEGMNNVEFCHRIAGRACFMIKAYM---EDLSKVEAFI 119
Query: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
+ +T THVVL + D L
Sbjct: 120 EQLSPFAETVTHVVLSTLDTDMTL 143
>emb|CAC13071.1| (AL445503) putative asnC-family transcriptional regulatory protein
[Streptomyces coelicolor A3(2)]
Length = 158
Score = 70.2 bits (169), Expect = 1e-11
Identities = 38/135 (28%), Positives = 73/135 (53%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DELD +I+ +L++ R S RE A+ L +A GT+ R+ +LE GVI G L+ +G
Sbjct: 3 VDELDTRILRLLLEQPRTSVREYARLLGIARGTLQARLDRLERDGVITGTAPSLSPAALG 62
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+ + A + I+ + E+ +A ++ + +TG D++ ++ + V+ +
Sbjct: 63 HPVLAFVHIEVTQGHLDEVGEALAAVPEIVEAFSITGGGDLLTRVVARDNAHLEDVVQKL 122
Query: 122 LSIDGVEKTNTHVVL 136
+S+ GV +T + V L
Sbjct: 123 ISLPGVVRTRSEVAL 137
>pir||E82382 transcription regulator AsnC family VCA1068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658514|gb|AAF96962.1| (AE004432) transcriptional
regulator, AsnC family [Vibrio cholerae]
Length = 160
Score = 69.5 bits (167), Expect = 2e-11
Identities = 41/150 (27%), Positives = 75/150 (49%), Gaps = 4/150 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD +D+ I+ IL R+ E+AK +N+ R+K+LE+ G I+G+ L+ +G
Sbjct: 3 LDRVDRDILRILHAKGRLPVVELAKLVNLTTSPCSERVKRLEKEGYIRGYHADLDPGKLG 62
Query: 62 YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
D+ + I+ ER +A + Y ++G++D ++ + K+ + F+
Sbjct: 63 LDVQVFIHIRLDQSSFSIFERFAHAVADIPEIEACYSLSGDFDTMIKVRVKDMKAYQAFM 122
Query: 119 KGVL-SIDGVEKTNTHVVLEVVKEDFRLEP 147
G L S+ GV +T + V+E K F + P
Sbjct: 123 SGKLGSLPGVIQTRSEFVIEEHKTSFGINP 152
>emb|CAC11747.1| (AL445064) transcription regulator related protein [Thermoplasma
acidophilum]
Length = 143
Score = 69.1 bits (166), Expect = 2e-11
Identities = 44/143 (30%), Positives = 79/143 (54%), Gaps = 4/143 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
+DE D +I+ LM+++R ++++ L++ TIY R++ + +SG+I+ FT+ +Y+ +G
Sbjct: 1 MDEKDIQILNYLMENARDKISDMSRVLDIPRVTIYERMQNMIKSGIIKKFTIVPDYKALG 60
Query: 62 YDLTAIMGI---KAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
+ A + I G RE+ IA K V VY + GE+D+++ + + E + FV
Sbjct: 61 VPVVAFILIAYTPKDGLSQRELAAKIANFKDVENVYIIAGEWDLLIKVRESSTEAVGNFV 120
Query: 119 KGVL-SIDGVEKTNTHVVLEVVK 140
L + GVE+ T V VK
Sbjct: 121 LDKLREMPGVERAQTITVFSEVK 143
>emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional regulatory protein.
[Streptomyces coelicolor A3(2)]
Length = 165
Score = 68.7 bits (165), Expect = 3e-11
Identities = 38/141 (26%), Positives = 76/141 (52%), Gaps = 2/141 (1%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
++ELD++I+ +L+KD R+SY ++ K ++ ++ R+++LE+ GVI+G+ ++ E +G
Sbjct: 20 MEELDRQIVQLLVKDGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG 79
Query: 62 YDLTAIMGIKA-QGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
+TA + +K +I +A + + V G+ + I+ + ++ +
Sbjct: 80 LPMTAFISVKPFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEELLAR 139
Query: 121 VLSIDGVEKTNTHVVLEVVKE 141
V S+ GV T T VVL E
Sbjct: 140 VRSLAGV-STRTTVVLSTPYE 159
>pir||D82983 leucine-responsive regulatory protein PA5308 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951624|gb|AAG08693.1|AE004943_9 (AE004943)
leucine-responsive regulatory protein [Pseudomonas
aeruginosa]
Length = 162
Score = 68.7 bits (165), Expect = 3e-11
Identities = 38/148 (25%), Positives = 77/148 (51%), Gaps = 4/148 (2%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD++D+ I+ IL ++ RIS+ E+ + + ++ R+++LE G+I G+ +LN +++
Sbjct: 11 LDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGYHARLNPQHLK 70
Query: 62 YDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
L + I G E R + K V+ + V+G +D +V A+ + +
Sbjct: 71 ASLLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARISEMASYRKLL 130
Query: 119 KGV-LSIDGVEKTNTHVVLEVVKEDFRL 145
+ L + V ++ +++V+E VKE L
Sbjct: 131 GDILLKLPHVRESKSYIVMEEVKESLDL 158
>sp|P54986|YBAO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN MDL-COF INTERGENIC REGION
>gi|1580718|dbj|BAA11651.1| (D82943) YbaO [Escherichia
coli]
Length = 152
Score = 67.5 bits (162), Expect = 7e-11
Identities = 37/144 (25%), Positives = 77/144 (52%), Gaps = 4/144 (2%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
MLD++D+K++ +L +D +S + +A+ +N+ + R+K+LE+ G++ G L+ E I
Sbjct: 1 MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKI 60
Query: 61 GYDLTAIMGIKAQGKKIR---EIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
G LTA + IK Q ++ + V+ + + GEYD ++ + + + + F
Sbjct: 61 GLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEF 120
Query: 118 VKGVL-SIDGVEKTNTHVVLEVVK 140
K ++ S+ G+ + +E +K
Sbjct: 121 YKRLVNSVPGLSDVTSSFAMEQIK 144
>pir||G64774 regulatory protein b0447 - Escherichia coli
>gi|1773131|gb|AAB40203.1| (U82664) similar to Z.
mobilis glutamate uptake regulatory protein [Escherichia
coli] >gi|1786652|gb|AAC73550.1| (AE000151) putative
LRP-like transcriptional regulator [Escherichia coli
K12]
Length = 181
Score = 67.5 bits (162), Expect = 7e-11
Identities = 37/144 (25%), Positives = 77/144 (52%), Gaps = 4/144 (2%)
Query: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
MLD++D+K++ +L +D +S + +A+ +N+ + R+K+LE+ G++ G L+ E I
Sbjct: 30 MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKI 89
Query: 61 GYDLTAIMGIKAQGKKIR---EIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
G LTA + IK Q ++ + V+ + + GEYD ++ + + + + F
Sbjct: 90 GLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEF 149
Query: 118 VKGVL-SIDGVEKTNTHVVLEVVK 140
K ++ S+ G+ + +E +K
Sbjct: 150 YKRLVNSVPGLSDVTSSFAMEQIK 173
>gi|11498085 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7429085|pir||B69309 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2650151|gb|AAB90762.1| (AE001071) transcriptional
regulatory protein, AsnC family [Archaeoglobus
fulgidus]
Length = 180
Score = 67.5 bits (162), Expect = 7e-11
Identities = 37/85 (43%), Positives = 57/85 (66%), Gaps = 3/85 (3%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKL--NYEN 59
LDE+D KII IL +SR+S EIAK LN++ T+ RI++LE GVI+G+T+KL ++EN
Sbjct: 3 LDEVDLKIINILKANSRVSITEIAKALNLSRQTVKARIERLENEGVIEGYTIKLASSFEN 62
Query: 60 IGYDLTAIMGIKAQGKKIREIERII 84
+G ++ +KI E+E ++
Sbjct: 63 LG-SSAYLLANTEDAEKILEMEEVV 86
>gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC family) [Sulfolobus
solfataricus]
Length = 155
Score = 67.1 bits (161), Expect = 9e-11
Identities = 36/142 (25%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD+ D+KI+ IL +++ S +E++ EL + + T+ RIK+LE++ +I+G+ ++ N+G
Sbjct: 9 LDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLG 68
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+++ +M I+ I+++ + + + V+ +Y + + V FK+ ++F+
Sbjct: 69 LNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANK 128
Query: 122 L-SIDGVEKTNTHVVLEVVKED 142
L +I G++ + ++E K D
Sbjct: 129 LYNIKGIKTVSISRIIERYKID 150
>pir||S74043 transcription regulator homolog c0107 - Sulfolobus solfataricus
>gi|1707737|emb|CAA69457.1| (Y08256) orf c01007
[Sulfolobus solfataricus]
Length = 155
Score = 67.1 bits (161), Expect = 9e-11
Identities = 36/142 (25%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
LD+ D+KI+ IL +++ S +E++ EL + + T+ RIK+LE++ +I+G+ ++ N+G
Sbjct: 9 LDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLG 68
Query: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
+++ +M I+ I+++ + + + V+ +Y + + V FK+ ++F+
Sbjct: 69 LNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANK 128
Query: 122 L-SIDGVEKTNTHVVLEVVKED 142
L +I G++ + ++E K D
Sbjct: 129 LYNIKGIKTVSISRIIERYKID 150
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48234814
Number of Sequences: 2977
Number of extensions: 1810423
Number of successful extensions: 6245
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6209
Number of HSP's gapped (non-prelim): 48
length of query: 147
length of database: 189,106,746
effective HSP length: 56
effective length of query: 91
effective length of database: 155,591,474
effective search space: 14158824134
effective search space used: 14158824134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)