BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0324 (PAB0324) DE:Hypothetical protein
         (117 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75165 hypothetical protein PAB0324 - Pyrococcus abyssi (st...   245  1e-64
pir||D71131 hypothetical protein PH0817 - Pyrococcus horikoshii ...    96  1e-19

>pir||H75165 hypothetical protein PAB0324 - Pyrococcus abyssi (strain Orsay)
           >gi|5457917|emb|CAB49407.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 117
           
 Score =  245 bits (619), Expect = 1e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MSQFTPTSDLARKAIDTVRKALPLFIPAPPIVHRDPEGYHIDVPILYMDFAVDRVHFNAE 60
           MSQFTPTSDLARKAIDTVRKALPLFIPAPPIVHRDPEGYHIDVPILYMDFAVDRVHFNAE
Sbjct: 1   MSQFTPTSDLARKAIDTVRKALPLFIPAPPIVHRDPEGYHIDVPILYMDFAVDRVHFNAE 60

Query: 61  TNAPFPKGSPVSSKVPPKSEEVVERMKAILEESRVLEACEFRKPERAWVVPWHGRAS 117
           TNAPFPKGSPVSSKVPPKSEEVVERMKAILEESRVLEACEFRKPERAWVVPWHGRAS
Sbjct: 61  TNAPFPKGSPVSSKVPPKSEEVVERMKAILEESRVLEACEFRKPERAWVVPWHGRAS 117


>pir||D71131 hypothetical protein PH0817 - Pyrococcus horikoshii
           >gi|3257227|dbj|BAA29910.1| (AP000003) 153aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 153
           
 Score = 96.3 bits (236), Expect = 1e-19
 Identities = 48/101 (47%), Positives = 70/101 (68%), Gaps = 5/101 (4%)

Query: 11  ARKAIDTVRKALPLFIPAPPIVHRDPEGYHIDVPILYMDFAVDRVHFNAETNAPFPKGSP 70
           A KAI  VR ALPLF    P++   P+G  +DVPILY++FA+DR+H++ +   P PKG P
Sbjct: 23  AEKAIKLVRNALPLFRVGKPLIK--PDG--VDVPILYLNFAIDRLHYDPKKERPLPKGCP 78

Query: 71  VSSKVPPKSEEVVERMKAILEESRVLEACEFRKPERAWVVP 111
            SS+   +  E+ E+++ ILEE+++L A EFR+PE  W+VP
Sbjct: 79  RSSRA-GEVGEIEEKVEKILEEAKILPAAEFREPENCWIVP 118


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47666241
Number of Sequences: 2977
Number of extensions: 1911730
Number of successful extensions: 5113
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5110
Number of HSP's gapped (non-prelim): 2
length of query: 117
length of database: 189,106,746
effective HSP length: 50
effective length of query: 67
effective length of database: 159,182,396
effective search space: 10665220532
effective search space used: 10665220532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)