BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0325 (PAB0325) DE:Hypothetical protein
(369 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75166 hypothetical protein PAB0325 - Pyrococcus abyssi (st... 716 0.0
pir||C71131 hypothetical protein PH0816 - Pyrococcus horikoshii ... 267 2e-70
sp|Q57898|Y456_METJA HYPOTHETICAL PROTEIN MJ0456 >gi|2128333|pir... 164 2e-39
sp|P75788|YBIR_ECOLI HYPOTHETICAL 41.2 KDA PROTEIN IM OMPX-MOEB ... 162 4e-39
gi|11499889 arsenite transport protein (arsB) [Archaeoglobus ful... 100 4e-20
gb|AAK40494.1| Arsenite transport protein (arsB) [Sulfolobus sol... 99 8e-20
pir||F72315 conserved hypothetical protein - Thermotoga maritima... 98 2e-19
pir||F71205 hypothetical protein PH1912 - Pyrococcus horikoshii ... 95 1e-18
pir||C75019 transport protein PAB1107 - Pyrococcus abyssi (strai... 94 3e-18
dbj|BAB04950.1| (AP001511) unknown conserved protein in others [... 87 4e-16
sp|O07186|YQ84_MYCTU HYPOTHETICAL 45.2 KDA PROTEIN RV2684 >gi|74... 81 2e-14
pir||G72300 conserved hypothetical protein - Thermotoga maritima... 78 2e-13
gb|AAC24385.1| (U89959) Hypothetical protein [Arabidopsis thaliana] 73 5e-12
>pir||A75166 hypothetical protein PAB0325 - Pyrococcus abyssi (strain Orsay)
>gi|5457918|emb|CAB49408.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 369
Score = 716 bits (1827), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MILYIVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRG 60
MILYIVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRG
Sbjct: 1 MILYIVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRG 60
Query: 61 ISIRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPM 120
ISIRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPM
Sbjct: 61 ISIRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPM 120
Query: 121 GNPQNIIIWRHYNLGILEFIKGMLPFTLLWLLILLAFAWLERGEVKLLEVPGVGVRKDLF 180
GNPQNIIIWRHYNLGILEFIKGMLPFTLLWLLILLAFAWLERGEVKLLEVPGVGVRKDLF
Sbjct: 121 GNPQNIIIWRHYNLGILEFIKGMLPFTLLWLLILLAFAWLERGEVKLLEVPGVGVRKDLF 180
Query: 181 FASAFLLGLDLFLGKLDMSLFALVFTIILFLVVDRYVLLSFDIALIPTFALIFSNFAEIS 240
FASAFLLGLDLFLGKLDMSLFALVFTIILFLVVDRYVLLSFDIALIPTFALIFSNFAEIS
Sbjct: 181 FASAFLLGLDLFLGKLDMSLFALVFTIILFLVVDRYVLLSFDIALIPTFALIFSNFAEIS 240
Query: 241 ELVKPKIVGYKLTFLVSLFMSQFISNVPATAILIHSNVPWLPLSLGVNLGGNGTVISSLA 300
ELVKPKIVGYKLTFLVSLFMSQFISNVPATAILIHSNVPWLPLSLGVNLGGNGTVISSLA
Sbjct: 241 ELVKPKIVGYKLTFLVSLFMSQFISNVPATAILIHSNVPWLPLSLGVNLGGNGTVISSLA 300
Query: 301 NLIALRISGVKWRDFHRYSLLYIMVATLVTFGIFLLLRHSHSSTLLSLGIVSSFRTFFVP 360
NLIALRISGVKWRDFHRYSLLYIMVATLVTFGIFLLLRHSHSSTLLSLGIVSSFRTFFVP
Sbjct: 301 NLIALRISGVKWRDFHRYSLLYIMVATLVTFGIFLLLRHSHSSTLLSLGIVSSFRTFFVP 360
Query: 361 FSFSFWLMF 369
FSFSFWLMF
Sbjct: 361 FSFSFWLMF 369
>pir||C71131 hypothetical protein PH0816 - Pyrococcus horikoshii
>gi|3257226|dbj|BAA29909.1| (AP000003) 368aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 368
Score = 267 bits (675), Expect = 2e-70
Identities = 148/345 (42%), Positives = 222/345 (63%), Gaps = 12/345 (3%)
Query: 1 MILYIVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLA---IRLARGS 57
+ LY++L L D S +++ ++W ++ LI SLI+ S+GLELSG+FT L+ I ++ GS
Sbjct: 20 IFLYLILLLRDNSLLQRTPGLIDWRNISLIASLILVSRGLELSGIFTRLSSYLISVSGGS 79
Query: 58 MRGISIRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSL 117
R ++ L+L AFSS+ IMNDTA+L+F PL+V++ +++E ++ LV L AI+ANIGS+L
Sbjct: 80 GRRLAFILLLTIAFSSSIIMNDTAMLIFIPLIVTISKVSEEDLSSLVVLSAIAANIGSAL 139
Query: 118 TPMGNPQNIIIWRHYNLGILEFIKGMLPFTLLWLLILLAFAWLE-RGEVKLLEVPGVGVR 176
TP+GNPQNIIIW Y + F+ MLPF LLWLL+LL A+L +++ E+P V +
Sbjct: 140 TPIGNPQNIIIWNSYAIPFHSFVLEMLPFVLLWLLLLLFLAYLIFNDKIERKELPPVNIN 199
Query: 177 KDLFFASAFLLGLDLFLGKLDMSLFALVFTIILFLVVDRYVLLSFDIALIPTFALIFSNF 236
+ S LL D+ + +L+ T +FL++ R VL FD L+ F IF +F
Sbjct: 200 TSFLWTSMILLVGDITFAQGGKALWTFPITFGVFLLIGREVLFGFDWGLLLMFIFIFVDF 259
Query: 237 AEISELVKPKIV-----GYKLTFLVSLFMSQFISNVPATAILIHSNVPWLPLSLGVNLGG 291
EI+ ++ V G KL FL S F+SQ +SNVPAT +L++ W+ L+ GVN+GG
Sbjct: 260 GEIAHILSSSGVSFPNSGVKL-FLTSAFLSQLVSNVPATILLLNEGKDWISLAAGVNIGG 318
Query: 292 NGTVISSLANLIALRISGVKWRDFHRYSLLYIMVATLVTFGIFLL 336
G ++ SLANLIA+RI V+ FHRYS+ Y ++ +++ IF+L
Sbjct: 319 TGLIVGSLANLIAIRIGEVETGKFHRYSVPYFLLTLILS--IFIL 361
>sp|Q57898|Y456_METJA HYPOTHETICAL PROTEIN MJ0456 >gi|2128333|pir||H64356 hypothetical
protein MJ0456 - Methanococcus jannaschii
>gi|1499250|gb|AAB98444.1| (U67496) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 352
Score = 164 bits (410), Expect = 2e-39
Identities = 100/311 (32%), Positives = 169/311 (54%), Gaps = 14/311 (4%)
Query: 5 IVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRGISIR 64
I+L L + P + V W ++F + L++ + + +++++ + S R I I
Sbjct: 16 ILLLLLNIINPMEVFHIVEWKTIFSLFYLMVIINIMRDTKFLDYISLKILKKSKR-IFIA 74
Query: 65 LILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEV---NVPRLVTLVAISANIGSSLTPMG 121
LI LT F S+ I ND ++ V PL + + R + ++ +L+ +SANIGS LTP+G
Sbjct: 75 LIFLTLFLSSLITNDVSLFVIIPLTLIIHRYTNMPFKDLEKLIIFEGVSANIGSGLTPIG 134
Query: 122 NPQNIIIWRHYNLGILEFIKGMLPFTLLWLLILLAFAWLERGEVKLLEVPGVGVRKDLFF 181
NPQN+ ++ YN+G LEFI M+PF + +L +L F ++ + K+ + ++ +F+
Sbjct: 135 NPQNLFLFHFYNIGTLEFIINMIPFEIFGILAILPFLEFKKYDTKI-NIDIKFKKEWIFY 193
Query: 182 ASAFLLGLDLFLGKLDMSLFALVFTIILFLVVDRYVLLSFDIALIPTFALIFSNFAEISE 241
+F+L L G L+ ++ + L L + Y + D + TF +F + +
Sbjct: 194 ILSFILVLLCVFGYLNF-----IYILPLILAILMYKRVKVDYLFLLTFIFLFVDIEGLKR 248
Query: 242 LVKPKIVGYK----LTFLVSLFMSQFISNVPATAILIHSNVPWLPLSLGVNLGGNGTVIS 297
+ I K + + + +SQ ISNVPAT +L H WLP++ GVN+GGNGT+I+
Sbjct: 249 IGIINIFSIKCGNVMLMIYASLLSQIISNVPATVLLSHLYKNWLPIAYGVNIGGNGTLIA 308
Query: 298 SLANLIALRIS 308
S ANLI LR+S
Sbjct: 309 SFANLITLRLS 319
>sp|P75788|YBIR_ECOLI HYPOTHETICAL 41.2 KDA PROTEIN IM OMPX-MOEB INTERGENIC REGION
>gi|7466797|pir||B64819 probable membrane protein ybiR -
Escherichia coli >gi|1787039|gb|AAC73905.1| (AE000184)
orf, hypothetical protein [Escherichia coli K12]
>gi|4062385|dbj|BAA35499.1| (D90719) Hypothetical
protein MJ0456 [Escherichia coli]
>gi|4062392|dbj|BAA35506.1| (D90720) Hypothetical
protein MJ0456 [Escherichia coli]
Length = 372
Score = 162 bits (407), Expect = 4e-39
Identities = 112/357 (31%), Positives = 184/357 (51%), Gaps = 26/357 (7%)
Query: 1 MILYIVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLAR--GSM 58
+++ I L+ F P P+ ++W ++ ++ L++ +KG+ELSG F L ++ R +
Sbjct: 19 ILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATE 78
Query: 59 RGISIRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLT 118
R +++ ++L A S F+ ND A+ + PL ++L R+ E+ V RL+ A++ N GS LT
Sbjct: 79 RRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLT 138
Query: 119 PMGNPQNIIIWRHYNLGILEFIKGMLPFTLLWLLILLAFAWLERGEVKLLEVPGVGV--- 175
P+GNPQNI+IW L FI M P +L LL W + GV
Sbjct: 139 PIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEW 198
Query: 176 RKDLFFASAFLLGLDLFLGKLDMSLFALVFTIILFLVVDRYVLLSFDIALIPTFALIFSN 235
+ L ++ L + L + L+ LV F ++ R V+LS D L+ F +F +
Sbjct: 199 KPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFID 258
Query: 236 -------------FAEISELVKPKIVGYKLTFLVSLFMSQFISNVPATAILIHSNVPWLP 282
+S L +P + +L ++ +SQ ISNVP+T +L++ P L
Sbjct: 259 VHLLTQLPALQGVLGNVSHLSEPGL------WLTAIGLSQVISNVPSTILLLNYVPPSLL 312
Query: 283 LSLGVNLGGNGTVISSLANLIALRISGVK--WRDFHRYSLLYIMVATLVTFGIFLLL 337
L VN+GG G + SLANLIALR++ + W FH YS+ ++ A LV + + ++L
Sbjct: 313 LVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVIL 369
>gi|11499889 arsenite transport protein (arsB) [Archaeoglobus fulgidus]
>gi|7482910|pir||D69538 arsenite transport protein
(arsB) homolog - Archaeoglobus fulgidus
>gi|2648213|gb|AAB88949.1| (AE000945) arsenite transport
protein (arsB) [Archaeoglobus fulgidus]
Length = 397
Score = 99.8 bits (245), Expect = 4e-20
Identities = 90/347 (25%), Positives = 164/347 (46%), Gaps = 28/347 (8%)
Query: 16 RKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLA--RGSMRGISIRLILLTAFSS 73
+++V+ +++ ++ L+ +++ + L ++G F LA ++ G+ + + ++ + F S
Sbjct: 45 KEAVRAIDYNTIMLLFGMMVLTAYLGIAGFFDWLASKIMGFSGNGKRLLFTIVFSSGFLS 104
Query: 74 AFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPMGNPQNIIIWRHYN 133
A +NDT + TP+VV + A ++ L+ +A SAN+GS++T +GNPQN++I
Sbjct: 105 ALFVNDTICVFMTPVVVRVALSAGISPIPLLIALATSANVGSAVTIIGNPQNMLIGLKSG 164
Query: 134 LGILEFIKGMLPFTLLWLLILLAFAW-LERGEVKLLEVPGVGVRKDLFFAS----AFLLG 188
+G ++F MLP + + I+ + + L RGE+ L + V + A+ F L
Sbjct: 165 IGFVQFTAKMLPVGVAGIFIVYSVIYVLYRGELGKLRNGKIEVNLNRRLAAKGLLTFALV 224
Query: 189 LDLFLGKL-DMSLFALVFTIILFL---VVDRYVLLSFDIALIPTFALIFSNFAEISELVK 244
L LF+ + +SL A + I+F V R L D L+ F +F +
Sbjct: 225 LILFVTEFYPVSLSAFIGAAIMFAIGGVKPREALEKVDWGLLLLFCNLFIVMHGFEKSYG 284
Query: 245 PKIVG----------YKLTFLVSLFMSQFISNVPATAILIHSNVP-----WLPLSLGVNL 289
KI+ Y L+++ S +SNVP +++ + WL L++
Sbjct: 285 EKILSMLSFGESFADYLYFSLLTVAGSNLVSNVPFVMMVLPAAKGAAADFWLILAMASTF 344
Query: 290 GGNGTVISSLANLIALRISGVKWRDFHRYSLLYIMVATLVTFGIFLL 336
GN T+I S+ANLI + H Y+ VTF L+
Sbjct: 345 AGNLTLIGSVANLIV--AESAERHGVHLSFFEYLKAGVPVTFATVLV 389
>gb|AAK40494.1| Arsenite transport protein (arsB) [Sulfolobus solfataricus]
Length = 411
Score = 99.1 bits (243), Expect = 8e-20
Identities = 99/384 (25%), Positives = 174/384 (44%), Gaps = 57/384 (14%)
Query: 2 ILYIVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARG--SMR 59
IL ++L + P +++Q +N + + +L + LE+SG LA ++ R
Sbjct: 35 ILMVILGIISPE---EALQSINLDVILFLITLFTFASALEVSGFLKFLAYKIIEKFKEPR 91
Query: 60 GISIRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTP 119
+ ++L + S + ND +TP+++ L R+ V+ + +A+ IGS + P
Sbjct: 92 KVLFYILLYSGLLSNLVTNDGVSASWTPVILELSRMIGVSEVPFLYALAVGVTIGSVIMP 151
Query: 120 MGNPQNIIIWRHYNLGILE-FIKGMLPFTLLWLL-ILLAFAWLERGEVKLLEVP-GVGVR 176
GNPQN++I GI FI + TL ++ +++A+ L R K L +P G+ ++
Sbjct: 152 TGNPQNLLI--ALESGIKNPFITFTIYLTLPSIISLIIAYFILFRLFRKSLSLPSGINIK 209
Query: 177 KD----------------LFFASAFLLGLDLFLGKLDMSLFALVFTIILFLVVD--RYVL 218
K+ +L L K+D+ L +LV + IL L+ + R ++
Sbjct: 210 KEEEEKVDFDRRLGYLTLTLLVVTIILFFSLSFFKIDILLGSLVTSSILLLLTEKRRDIV 269
Query: 219 LSFDIALIPTFALIFSNFAEISELVKPKIVGYKLTFL-----------VSLFMSQFISNV 267
D PT F ++K I+ Y FL VS+ +SQ +SNV
Sbjct: 270 RRMD---WPTILFFIGLFIFTDGVLKSGIIQYLSNFLPPPDSVASIMIVSILLSQVLSNV 326
Query: 268 PATAILI-----HSN---VPWLPLSLGVNLGGNGTVISSLANLIALRIS------GVKWR 313
P AI I HS V WL L+ G + GN T++ + +N+I S G +
Sbjct: 327 PLVAIYIPIMISHSGITVVDWLALAAGSTIAGNFTILGAASNVIISEASESRGGKGFNFV 386
Query: 314 DFHRYSLLYIMVATLVTFGIFLLL 337
+F +Y+ + I++ + +FL+L
Sbjct: 387 EFMKYT-IPILIPNAIIIYLFLVL 409
>pir||F72315 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981472|gb|AAD36015.1|AE001757_8 (AE001757)
conserved hypothetical protein [Thermotoga maritima]
Length = 425
Score = 97.9 bits (240), Expect = 2e-19
Identities = 97/383 (25%), Positives = 174/383 (45%), Gaps = 69/383 (18%)
Query: 19 VQFVNWGSLFLITSLIIASKGLELSGVFTSL---AIRLARGSMRGISIRLILLTAFSSAF 75
V++V++ ++FL+ ++I + SG+F L +++L+ G++ I + L A S+F
Sbjct: 50 VRYVDFNTIFLLIGMMIFVSVTKRSGLFHFLGLYSVKLSGGNVFLFFIAINTLVALLSSF 109
Query: 76 IMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPMGNPQNIIIWRHYNLG 135
+ N T +LVF P+ + + +++ V IS+NIG + T +G+P NI+I L
Sbjct: 110 LDNVTTILVFVPVTLVVCDTVDLDPVPFVISEIISSNIGGTATMIGDPPNIMIASAAKLH 169
Query: 136 ILEFIKGMLPFTLLWLLILLAFAWLERGEVKLLEVPGVGVRKDLFFASAFLLGLDLFLGK 195
L+F+ + P +L L++ L F V ++P V V KD F ++ LF
Sbjct: 170 FLDFVVNVAPAAVLTLIVTLIFLSAVYRRVIFRKIP-VEVVKD-FDPRRAIVDKKLFY-- 225
Query: 196 LDMSLFALVFTIILFLVVDRYVLLSFDIALIPTF-ALIFSNFAEISELVKPKIVGYKLTF 254
+S+ + ++LF + L SF++AL+ F +L F +I ++ K +I + F
Sbjct: 226 --LSIILTLVVLVLFSLQKPLGLESFEVALLAGFLSLAFLKKKDIEDVFK-EIEWGVIFF 282
Query: 255 LVSLFM----------------------------------------SQFISNVPATAILI 274
+ LF+ S F+ N+P TA +I
Sbjct: 283 FIGLFLVVGALEEAGVLERISELVIRLSKGKMESTLISVLGISGLSSAFVDNIPFTATMI 342
Query: 275 ---------------HSNVPWLPLSLGVNLGGNGTVISSLANLIALR-ISGVKWRDFHRY 318
W LSLG GGNGT+I + AN++ I+ K F Y
Sbjct: 343 PVIKKLAVLAPETFSDLRPLWWALSLGACFGGNGTLIGASANVVGTSLIADRKHITFWEY 402
Query: 319 SLL--YIMVATLVTFGIFLLLRH 339
+ +++ +L+ G++LL+R+
Sbjct: 403 FKIGFPVLILSLLVSGVYLLIRY 425
>pir||F71205 hypothetical protein PH1912 - Pyrococcus horikoshii
>gi|3258354|dbj|BAA31037.1| (AP000007) 424aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 424
Score = 94.8 bits (232), Expect = 1e-18
Identities = 105/382 (27%), Positives = 183/382 (47%), Gaps = 68/382 (17%)
Query: 17 KSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRGISIRLILL----TAFS 72
K ++++ ++ L+ +++ + SG+F +AI++A+ S +G IR++LL TA
Sbjct: 48 KVPEYLDLDTILLLAGMMVVVNISKESGLFEYIAIKVAKVS-KGNPIRVLLLFSVTTAVV 106
Query: 73 SAFIMNDTAVLVFTPLVVSLGRIAEVN-VPRLVTLVAISANIGSSLTPMGNPQNIIIWRH 131
SAF+ N T VL+ TP+++ + R VN VP L+ + ++NIG + T +G+P NI+I
Sbjct: 107 SAFLDNVTTVLLLTPMLLYITRRMGVNPVPYLLAEI-FASNIGGTATLIGDPPNIMIGSA 165
Query: 132 YNLGILEFIKGMLPFTLLWLLILLAFAWL----ERGEVK--------LLEVPGVGVRKDL 179
L +FI M P + + L I++A ++ E VK L E + R +L
Sbjct: 166 AKLSFNDFIVNMAPISFMDLFIMIALVYILYKKEFSRVKYNLDGIMNLREEDAIKDR-EL 224
Query: 180 FFASAFLLGLDLF-------LGKLDMSLFALVFTIILFLVVDRYVLLSFDIAL--IPTFA 230
F S +GL + LG ++ ++ AL IL L + +S ++AL +
Sbjct: 225 FKKSVITIGLIIVAFFFHDALG-IEPAVVALTGATILLL----WSRVSPEVALEKVEWAT 279
Query: 231 LIFSN--FAEISELVKPKIV----------------GYKLTFLVSLFMSQFISNVPATAI 272
L F F + LV+ ++ L +S F S I N+P TA
Sbjct: 280 LFFFGGLFIIVGGLVETGLIDEAGKWIVRHITSENEAILLISWISAFSSAIIDNIPFTAT 339
Query: 273 L----------IHSNVPWLPLSLGVNLGGNGTVISSLANLIALRIS-----GVKWRDFHR 317
+ I+ W LSLG LGGNGT I + AN++ L I+ + ++DF +
Sbjct: 340 MIPLIKSMAGSINIYPLWWALSLGACLGGNGTAIGASANVVVLGIAYREGIRITFKDFLK 399
Query: 318 YSLLYIMVATLVTFGIFLLLRH 339
+ +M++++ + L+ R+
Sbjct: 400 VGMA-VMISSVAAGSLVLIARY 420
>pir||C75019 transport protein PAB1107 - Pyrococcus abyssi (strain Orsay)
>gi|5459107|emb|CAB50593.1| (AJ248288) Transport protein
[Pyrococcus abyssi]
Length = 425
Score = 94.0 bits (230), Expect = 3e-18
Identities = 108/373 (28%), Positives = 174/373 (45%), Gaps = 56/373 (15%)
Query: 20 QFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRGISIRLILL----TAFSSAF 75
++++ ++ L+ +++ SG+F +AI++AR S +G +R++LL TA SAF
Sbjct: 51 EYLDLDTILLLAGMMVIVNISRESGLFEYIAIKVARIS-KGDPMRVLLLFSVTTAVVSAF 109
Query: 76 IMNDTAVLVFTPLVVSLGRIAEVN-VPRLVTLVAISANIGSSLTPMGNPQNIIIWRHYNL 134
+ N T VL+ TP+++ + R V+ VP L+ + ++NIG + T +G+P NI+I L
Sbjct: 110 LDNVTTVLLLTPMLLYITRRMGVDPVPYLLAEI-FASNIGGTATLIGDPPNIMIASAAKL 168
Query: 135 GILEFIKGMLPFTLLWLLILLAFAWL-ERGEVKLLEVPGVGVR----------KDLFFAS 183
EFI M P L L I++A +L R E K +E G+ K LF S
Sbjct: 169 SFNEFIMNMTPIAFLDLFIMVALIYLFYRREFKNVEYHVDGIMNLREEEAIRDKQLFRKS 228
Query: 184 AFLLG---LDLFLGK---LDMSLFALVFTIILFL-----------VVDRYVLLSFDIALI 226
+ L FL ++ ++ AL IL L V+ L F I
Sbjct: 229 VVTIAFVVLAFFLHDTIGIEPAVVALTGASILLLWSRVPPEVALEKVEWATLFFFGGLFI 288
Query: 227 PTFALIFSNFAE-----ISELVKPKIVGYKLTFLVSLFMSQFISNVPATAILI------- 274
L+ + E I + + + VS F+S I N+P TA +I
Sbjct: 289 IVGGLVETGLIEDVGKWIVSHISSENEAILMISWVSAFLSAIIDNIPFTATMIPLIKSMG 348
Query: 275 -HSNV--PWLPLSLGVNLGGNGTVISSLANLIALRIS-----GVKWRDFHRYSLLYIMVA 326
NV W LSLG LGGNGT I + AN++ L I+ + + DF + ++ IM+
Sbjct: 349 GSINVYPLWWALSLGACLGGNGTAIGASANVVVLGIAYREGIRITFIDFLKVGMI-IMLL 407
Query: 327 TLVTFGIFLLLRH 339
T+ + L+ R+
Sbjct: 408 TVGAGSLVLIARY 420
>dbj|BAB04950.1| (AP001511) unknown conserved protein in others [Bacillus
halodurans]
Length = 428
Score = 86.6 bits (211), Expect = 4e-16
Identities = 110/393 (27%), Positives = 186/393 (46%), Gaps = 72/393 (18%)
Query: 6 VLALFDPSYPRKS--VQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSMRGISI 63
VL LF YP + +Q+++W ++ L+ S++I SG F +AIRLA+ + G I
Sbjct: 33 VLMLFVGIYPLDAAFLQYIDWHTITLLLSMMILVSITSQSGFFEYMAIRLAQ-KVDGRPI 91
Query: 64 RLIL----LTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVN-VPRLVTLVAISANIGSSLT 118
L++ +TA SAF+ N T VL+ P+V++L + ++N VP L+TLV +++NIG + T
Sbjct: 92 PLLIVVAGITAIGSAFLNNVTMVLLIVPIVLTLTNLLKLNAVPFLLTLV-MASNIGGTAT 150
Query: 119 PMGNPQNIIIWRHY-NLGILEFIKGMLP------FTLLWLLIL-----LAFAWLERGEVK 166
+G+P N++I + +L +F+ + P F +L LIL L+ +R ++
Sbjct: 151 LIGDPPNLMIGQAVAHLSFNDFLLHLGPIVAVIFFVVLIGLILYYRRQLSVTAEDRSRLR 210
Query: 167 LLEVPGVGVRKDLFFASAFLLGLDL-------FLGKLDMSLFALVFTIILFLVVD----- 214
++ + L S +L L FL ++++ A+ ++L L+
Sbjct: 211 GVDPTSYLKNRPLLIKSMTVLTLTTIGFTIQPFL-PVELTSIAMAGALLLMLITQNEQDM 269
Query: 215 -------RYVLLSFDIALIPTFALI--FSNFAEISELVKPKIVGY------KLTFLV--- 256
+V L F I L F L+ I E+ K I+ Y K + +
Sbjct: 270 EGVFRSVEWVTLFFFIGL---FMLVGGIKEVGIIDEIAK-AIIYYTEGDIPKTSLFILWG 325
Query: 257 SLFMSQFISNVPATAILI------------HSNVPWLPLSLGVNLGGNGTVISSLANLIA 304
S +S F+ N+P A +I + W L+LG LGGN TVI + AN+I
Sbjct: 326 SGILSGFVDNIPFVAAMIPVILEFQEYGVGELDPLWWSLALGACLGGNATVIGATANVI- 384
Query: 305 LRISGVKWRDFHRYSLL-YIMVATLVTFGIFLL 336
++G+ + +S L ++ V V FLL
Sbjct: 385 --VAGLAVQAKQSFSYLEFLKVGAPVALVSFLL 415
>sp|O07186|YQ84_MYCTU HYPOTHETICAL 45.2 KDA PROTEIN RV2684 >gi|7477889|pir||G70528
probable arsA protein - Mycobacterium tuberculosis
(strain H37RV) >gi|2181975|emb|CAB09495.1| (Z96072) arsA
[Mycobacterium tuberculosis]
Length = 429
Score = 80.8 bits (196), Expect = 2e-14
Identities = 92/375 (24%), Positives = 159/375 (41%), Gaps = 60/375 (16%)
Query: 22 VNWGSLFLITSLIIASKGLELSGVFTSLAI---RLARGSMRGISIRLILLTAFSSAFIMN 78
++W +FL+ ++I L +GVF AI + ARGS I I L+L++A +SA + N
Sbjct: 53 IDWDVIFLLVGMMIIVGVLRQTGVFEYTAIWAAKRARGSPLRIMILLVLVSALASALLDN 112
Query: 79 DTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPMGNPQNIIIWRHYNLGILE 138
T VL+ P+ + + +N + ++NIG + T +G+P NII+ L +
Sbjct: 113 VTTVLLIAPVTLLVCDRLNINTTSFLMAEVFASNIGGAATLVGDPPNIIVASRAGLTFND 172
Query: 139 FIKGMLPFTLLWLLILLA------------------FAWLERGEVKLLEVPGVGVRKDLF 180
F+ + P ++ L+ L+A L+ GE + G+ V+
Sbjct: 173 FMLHLTPLVVIVLIALIAVLPRLFGSITVEADRIADVMALDEGEA--IRDRGLLVKCGAV 230
Query: 181 FASAFLLGLDLFLGKLDMSLFALVFTIILFLV-----------VDRYVLLSFDIALIPTF 229
F + + + SL AL+ +L +V V+ LL F I
Sbjct: 231 LVLVFAAFVAHPVLHIQPSLVALLGAGMLIVVSGLTRSEYLSSVEWDTLLFFAGLFIMVG 290
Query: 230 ALIFSNFAE-----ISELVKPKIVGYKLTFL-VSLFMSQFISNVPATAILI--------- 274
AL+ + ++L IV L VS +S I N+P A +
Sbjct: 291 ALVKTGVVNDLARAATQLTGGNIVATAFLILGVSAPISGIIDNIPYVATMTPLVAELVAV 350
Query: 275 -----HSNVPWLPLSLGVNLGGNGTVISSLANLIALRI-----SGVKWRDFHRYSLLYIM 324
++ PW L+LG + GGN T I + AN++ L I + + + +F R + +
Sbjct: 351 MGGQPSTDTPWWALALGADFGGNLTAIGASANVVMLGIARRAGAPISFWEFTRKGAV-VT 409
Query: 325 VATLVTFGIFLLLRH 339
++ I+L LR+
Sbjct: 410 AVSIALAAIYLWLRY 424
>pir||G72300 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981587|gb|AAD36122.1|AE001765_1 (AE001765)
conserved hypothetical protein [Thermotoga maritima]
Length = 421
Score = 77.6 bits (188), Expect = 2e-13
Identities = 89/371 (23%), Positives = 169/371 (44%), Gaps = 57/371 (15%)
Query: 20 QFVNWGSLFLITSLIIASKGLELSGVFTSLAI---RLARGSMRGISIRLILLTAFSSAFI 76
+ V++ +L L+ ++I L+ +G F LAI +++RG + L++LTA +SAF+
Sbjct: 52 EVVDFNTLGLLLGMMIIVHILKGTGFFEYLAISAIKISRGRFWLLFAFLMVLTAVTSAFL 111
Query: 77 MNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPMGNPQNIIIWRHYNLGI 136
N +++ +P++ + EVN NIG T +G+P NI++ L
Sbjct: 112 DNLITIILVSPILFLILDTMEVNPVPFFLFTIFIDNIGGMSTLIGSPLNIVLGSISGLSF 171
Query: 137 LEFIKGM-LPFTLLWLLILLAFAWLERGEVKLLE--------------VPGVGVRKDL-- 179
+F+K M L L+++++ F R + K E V ++K L
Sbjct: 172 NDFLKNMGLVTVLMFVVVFFLFKRYVRIDEKAFEKLRNLLSVDPKRSITDPVVLKKSLFV 231
Query: 180 FFASAFLLGLDLFLGKLDMSLFALVFTIILFLV-----------VDRYVLLSFDIALIPT 228
F ++ L GL F+ ++++SL AL+ L L+ +D L + I +
Sbjct: 232 FLSTLVLFGLHSFV-EVELSLIALIAACALLLMLGKNFEKVSEGIDWDTLFFYTGLFIIS 290
Query: 229 FALIFSNFAEISELVKPKIVGYKLTFL-----VSLFMSQFISNVPAT-------AILIHS 276
++L E+ + + F+ +S+ + F+S VPAT IL+
Sbjct: 291 YSLEQIGVMEVIASFLKALSFNRFLFVATVTWISILSTAFLSAVPATLIIAPTLKILVSQ 350
Query: 277 NVP---WLPLSLGVNLGGNGTVISSLANLIALRI------SGVKWRDFHR--YSLLYI-- 323
P W ++G NLG N T + ++ N++ L + V +++F + +S ++I
Sbjct: 351 GFPASLWWVYAVGANLGTNLTPLGAVQNIVGLSLLEKYTKHTVSFKEFFKVAWSFMFIPF 410
Query: 324 MVATLVTFGIF 334
++ATL + I+
Sbjct: 411 IIATLYSLIIY 421
>gb|AAC24385.1| (U89959) Hypothetical protein [Arabidopsis thaliana]
Length = 502
Score = 73.0 bits (176), Expect = 5e-12
Identities = 47/161 (29%), Positives = 84/161 (51%), Gaps = 6/161 (3%)
Query: 5 IVLALFDPSYPRKSVQFVNWGSLFLITSLIIASKGLELSGVFTSLAIRLARGSM--RGIS 62
+++ +F P ++ ++ L L+ ++ S LE + +F L L+ S + +
Sbjct: 44 MLMVIFQVITPEQAYAAIDLPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLL 103
Query: 63 IRLILLTAFSSAFIMNDTAVLVFTPLVVSLGRIAEVNVPRLVTLVAISANIGSSLTPMGN 122
R+ L++A SSA NDT+ +V T V+ + R + + +A SANIGSS TP+GN
Sbjct: 104 CRVCLVSAVSSALFTNDTSCVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGN 163
Query: 123 PQNIIIWRHYNLGILEFIKGMLPFTLLWL----LILLAFAW 159
PQN++I + EF+ G+ P ++ + ++LL W
Sbjct: 164 PQNLVIAVQSKIPFWEFLLGVFPAMIVGITVNAMLLLGMYW 204
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.146 0.432
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121582598
Number of Sequences: 2977
Number of extensions: 4694414
Number of successful extensions: 17817
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17766
Number of HSP's gapped (non-prelim): 30
length of query: 369
length of database: 189,106,746
effective HSP length: 52
effective length of query: 317
effective length of database: 157,985,422
effective search space: 50081378774
effective search space used: 50081378774
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 166 (69.1 bits)