BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0329 (PAB0329) DE:Hypothetical protein
(117 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75166 hypothetical protein PAB0329 - Pyrococcus abyssi (st... 228 2e-59
pir||B71049 hypothetical protein PH1682 - Pyrococcus horikoshii ... 212 1e-54
gb|AAK42167.1| Conserved hypothetical protein [Sulfolobus solfat... 114 3e-25
pir||A72336 conserved hypothetical protein - Thermotoga maritima... 113 6e-25
gi|11498475 conserved hypothetical protein [Archaeoglobus fulgid... 113 8e-25
dbj|BAB04362.1| (AP001509) unknown conserved protein in others [... 107 4e-23
emb|CAC11328.1| (AL445063) conserved hypothetical protein [Therm... 107 4e-23
pir||H69171 hypothetical protein MTH544 - Methanobacterium therm... 107 5e-23
gb|AAG20516.1| (AE005124) Vng2432c [Halobacterium sp. NRC-1] 104 4e-22
pir||T36338 hypothetical protein SCE9.19 - Streptomyces coelicol... 90 7e-18
sp|P33382|YORB_LISMO HYPOTHETICAL 12.0 KD PROTEIN IN PLCB-LDH IN... 76 1e-13
dbj|BAA11327.1| (D78257) ORF10 [Enterococcus faecalis] 73 1e-12
>pir||E75166 hypothetical protein PAB0329 - Pyrococcus abyssi (strain Orsay)
>gi|5457922|emb|CAB49412.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 117
Score = 228 bits (575), Expect = 2e-59
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MKGMETIEGIIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYT 60
MKGMETIEGIIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYT
Sbjct: 1 MKGMETIEGIIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYT 60
Query: 61 EMMAEAREEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIEREEK 117
EMMAEAREEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIEREEK
Sbjct: 61 EMMAEAREEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIEREEK 117
>pir||B71049 hypothetical protein PH1682 - Pyrococcus horikoshii
>gi|3258111|dbj|BAA30794.1| (AP000006) 117aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 117
Score = 212 bits (533), Expect = 1e-54
Identities = 105/117 (89%), Positives = 112/117 (94%)
Query: 1 MKGMETIEGIIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYT 60
MK M+TIEGIIVVTT EIPGY++VEVKG+ARGG VRATH+GRDIMALLRN+KGGEVKEYT
Sbjct: 1 MKDMKTIEGIIVVTTPEIPGYKVVEVKGVARGGTVRATHIGRDIMALLRNLKGGEVKEYT 60
Query: 61 EMMAEAREEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIEREEK 117
EMMAEAREEALRRMALHAKELGANAVVN RFATSNLGGSMAEIYAYGTAVV+ER EK
Sbjct: 61 EMMAEAREEALRRMALHAKELGANAVVNFRFATSNLGGSMAEIYAYGTAVVVERVEK 117
>gb|AAK42167.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 114
Score = 114 bits (283), Expect = 3e-25
Identities = 59/108 (54%), Positives = 82/108 (75%), Gaps = 1/108 (0%)
Query: 8 EGIIVVTTSE-IPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEA 66
EG ++VT E PGY+IVE+KG+ G VR+ LG++I+A LR++ GGE+KEY E+ +A
Sbjct: 5 EGDVLVTNGEQSPGYKIVEIKGLVVGITVRSRGLGKNIIASLRSLLGGEIKEYVELAEQA 64
Query: 67 REEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIER 114
R +AL+RM +AK LGANAVVN+RF ++ L +M EI AYGTAVV+E+
Sbjct: 65 RLQALQRMVDNAKALGANAVVNVRFDSNELSEAMDEIIAYGTAVVVEK 112
>pir||A72336 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981291|gb|AAD35845.1|AE001746_6 (AE001746)
conserved hypothetical protein [Thermotoga maritima]
Length = 106
Score = 113 bits (280), Expect = 6e-25
Identities = 52/105 (49%), Positives = 74/105 (69%)
Query: 10 IIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREE 69
+I+ TT ++PGYR+ E+ G+ G VV + HLGRDI A + + GGE+K YTEM+ EAR
Sbjct: 1 MIITTTEQVPGYRVKEILGVVSGNVVMSKHLGRDIAAAFKTLAGGEIKGYTEMLTEARNI 60
Query: 70 ALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIER 114
AL RM A++LGA+AV+ R+++S + AEI AYGTAV +E+
Sbjct: 61 ALERMMKEAEKLGADAVIGFRYSSSTIMSGAAEILAYGTAVKLEK 105
>gi|11498475 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448440|pir||E69358 conserved hypothetical protein
AF0869 - Archaeoglobus fulgidus
>gi|2649731|gb|AAB90368.1| (AE001044) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 108
Score = 113 bits (279), Expect = 8e-25
Identities = 55/101 (54%), Positives = 72/101 (70%)
Query: 10 IIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREE 69
II+ TT +P + E+ G+ G VRA H+G+DI+A L+NI GGE++EYTEM+ +AR E
Sbjct: 5 IIITTTETVPQREVAEILGVVFGNTVRAKHVGKDILAGLKNIVGGEIEEYTEMLRDARME 64
Query: 70 ALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAV 110
AL RM AK+LGA+AVVN+RF TS AE+ AYGTAV
Sbjct: 65 ALNRMIKEAKKLGADAVVNVRFTTSQTMAGAAELLAYGTAV 105
>dbj|BAB04362.1| (AP001509) unknown conserved protein in others [Bacillus
halodurans]
Length = 106
Score = 107 bits (265), Expect = 4e-23
Identities = 53/106 (50%), Positives = 72/106 (67%)
Query: 10 IIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREE 69
+++VTT I GY + VKG +G V+ H+GRDI A L+ + GGE+K Y+EMM EAR+
Sbjct: 1 MMIVTTDRIDGYNVKAVKGYVKGSTVQTKHIGRDITAGLKGLVGGEIKGYSEMMDEARKL 60
Query: 70 ALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIERE 115
A+ RMA A+ GANAV+ R TS + + AEI AYGTAV +E+E
Sbjct: 61 AIHRMAQDAEAKGANAVIGFRLQTSTVMANAAEIIAYGTAVEVEKE 106
>emb|CAC11328.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 133
Score = 107 bits (265), Expect = 4e-23
Identities = 53/109 (48%), Positives = 80/109 (72%)
Query: 5 ETIEGIIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMA 64
E + +I+V T IPG RIV+V G G VR+ LG +++A LR++ GGE+KEYT+M++
Sbjct: 13 EEMSDVIMVNTEYIPGKRIVKVFGTIWGITVRSRGLGGNLVAGLRSLAGGEIKEYTKMLS 72
Query: 65 EAREEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIE 113
+AR A+ R+ A+++GANAV+N+RF +S++G M EI AYGTAV++E
Sbjct: 73 DARNTAMERLQSAAEQIGANAVINVRFDSSDIGQVMTEIVAYGTAVLVE 121
>pir||H69171 hypothetical protein MTH544 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621619|gb|AAB85050.1| (AE000837)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 127
Score = 107 bits (264), Expect = 5e-23
Identities = 56/113 (49%), Positives = 76/113 (66%), Gaps = 1/113 (0%)
Query: 4 METIEGIIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMM 63
+E +I VT++ +PGYR VEV G G VR+ LG I ++I GGE+KEY MM
Sbjct: 16 VEEHRDVIYVTSNYVPGYRAVEVLGFVYGLTVRSRRLGGQIDRF-KSILGGEIKEYVTMM 74
Query: 64 AEAREEALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIEREE 116
+R+EAL RM HA+ELGANAV+++RF + ++ M EI AYGTAV++E EE
Sbjct: 75 EHSRQEALERMLDHARELGANAVISVRFDSDSISDIMQEILAYGTAVIVEPEE 127
>gb|AAG20516.1| (AE005124) Vng2432c [Halobacterium sp. NRC-1]
Length = 104
Score = 104 bits (256), Expect = 4e-22
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 13 VTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREEALR 72
VTT +PG I E G+ARG V+A ++GRDI +RNI GGE+K Y+E++ +AR++AL
Sbjct: 4 VTTETVPGREITESLGVARGNTVKARNVGRDITQSIRNITGGELKAYSELLTDARDDALD 63
Query: 73 RMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVI 112
RMA A+ +GA+AVVN+R +S + +E+ AYGTAV +
Sbjct: 64 RMAEDARSMGADAVVNVRLESSEIANGGSEVIAYGTAVTL 103
>pir||T36338 hypothetical protein SCE9.19 - Streptomyces coelicolor
>gi|4808351|emb|CAB42765.1| (AL049841) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 106
Score = 90.1 bits (220), Expect = 7e-18
Identities = 45/106 (42%), Positives = 69/106 (64%)
Query: 10 IIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREE 69
++VVTT+++PG+R+ EV G G VR+ HLG I A L+++ GGE++ T+ + E R +
Sbjct: 1 MLVVTTNDLPGHRVQEVLGEVFGLTVRSRHLGSQIGAGLKSLVGGELRGLTKTLVETRNQ 60
Query: 70 ALRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIERE 115
A+ R+ A+ GANAV++ RF + E+ AYGTAVV+ RE
Sbjct: 61 AMERLVEQARARGANAVLSFRFDVTEAADVGTEVCAYGTAVVVARE 106
>sp|P33382|YORB_LISMO HYPOTHETICAL 12.0 KD PROTEIN IN PLCB-LDH INTERGENIC REGION (ORFB)
>gi|282503|pir||I43868 hypothetical protein B
plcB-region [imported] - Listeria monocytogenes
>gi|149648|gb|AAA25272.1| (M82881) ORFB [Listeria
monocytogenes]
Length = 110
Score = 75.7 bits (183), Expect = 1e-13
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 10 IIVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREE 69
+IV T+ I G +I+E K I G V+ + +DI A LRN GG + Y + + AREE
Sbjct: 1 MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREE 60
Query: 70 ALRRMALHAKELGANAVVNMRFATSNLG--GSMAEIYAYGTAVVIEREE 116
A+R M AK++GANAV+ + LG M + A GTAVVIE ++
Sbjct: 61 AIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQD 109
>dbj|BAA11327.1| (D78257) ORF10 [Enterococcus faecalis]
Length = 105
Score = 72.6 bits (175), Expect = 1e-12
Identities = 38/105 (36%), Positives = 63/105 (59%)
Query: 11 IVVTTSEIPGYRIVEVKGIARGGVVRATHLGRDIMALLRNIKGGEVKEYTEMMAEAREEA 70
+++TTSE E + G + ++ ++I A L+N+ GGE+K YTEM EAR+ A
Sbjct: 1 MLITTSEKLYGVEYETLDVVFGVTTHSKNIVKNIGAGLKNLVGGEIKAYTEMQQEARKIA 60
Query: 71 LRRMALHAKELGANAVVNMRFATSNLGGSMAEIYAYGTAVVIERE 115
+ R+ AK +GA+A++ MRF + ++ M + AYGTAV + +
Sbjct: 61 MDRLKEEAKNIGADAIIAMRFDSGSISNDMQSVVAYGTAVKFKNQ 105
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.134 0.356
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35664890
Number of Sequences: 2977
Number of extensions: 1146293
Number of successful extensions: 3815
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3802
Number of HSP's gapped (non-prelim): 12
length of query: 117
length of database: 189,106,746
effective HSP length: 58
effective length of query: 59
effective length of database: 154,394,500
effective search space: 9109275500
effective search space used: 9109275500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)