BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0330 (PAB0330) DE:Hypothetical protein
         (215 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75166 hypothetical protein PAB0330 - Pyrococcus abyssi (st...   424  e-118
pir||A71049 hypothetical protein PH1681 - Pyrococcus horikoshii ...   294  5e-79
pir||E75091 hypothetical protein PAB1625 - Pyrococcus abyssi (st...    85  9e-16

>pir||F75166 hypothetical protein PAB0330 - Pyrococcus abyssi (strain Orsay)
           >gi|5457923|emb|CAB49413.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 215
           
 Score =  424 bits (1079), Expect = e-118
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MNSAPFIILGGALAWVFLYFLRLKKFYPGEFILGIFAFVIAMAIQNMIQRTPLLWFNLSS 60
           MNSAPFIILGGALAWVFLYFLRLKKFYPGEFILGIFAFVIAMAIQNMIQRTPLLWFNLSS
Sbjct: 1   MNSAPFIILGGALAWVFLYFLRLKKFYPGEFILGIFAFVIAMAIQNMIQRTPLLWFNLSS 60

Query: 61  ASKLALALWFGFSAGFVQEGIKYVFVKGMKPYKGAIVGLGFGIAEVILLAVAVTIEGPSN 120
           ASKLALALWFGFSAGFVQEGIKYVFVKGMKPYKGAIVGLGFGIAEVILLAVAVTIEGPSN
Sbjct: 61  ASKLALALWFGFSAGFVQEGIKYVFVKGMKPYKGAIVGLGFGIAEVILLAVAVTIEGPSN 120

Query: 121 VPWFLLVAALVERFSAVLFHVASTSLLSSSNSLVFLGVFAVHGVVDSIASYSLLINLVES 180
           VPWFLLVAALVERFSAVLFHVASTSLLSSSNSLVFLGVFAVHGVVDSIASYSLLINLVES
Sbjct: 121 VPWFLLVAALVERFSAVLFHVASTSLLSSSNSLVFLGVFAVHGVVDSIASYSLLINLVES 180

Query: 181 PKVFWVEAIVGGIALVMLKFALPRIKIEEEEGPKW 215
           PKVFWVEAIVGGIALVMLKFALPRIKIEEEEGPKW
Sbjct: 181 PKVFWVEAIVGGIALVMLKFALPRIKIEEEEGPKW 215


>pir||A71049 hypothetical protein PH1681 - Pyrococcus horikoshii
           >gi|3258110|dbj|BAA30793.1| (AP000006) 213aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 213
           
 Score =  294 bits (745), Expect = 5e-79
 Identities = 140/215 (65%), Positives = 178/215 (82%), Gaps = 2/215 (0%)

Query: 1   MNSAPFIILGGALAWVFLYFLRLKKFYPGEFILGIFAFVIAMAIQNMIQRTPLLWFNLSS 60
           MNSAPF+I GG LAW+F+YFLRL++FY GEF+LG+F F IA+ IQ++IQ+  L+WFN+ +
Sbjct: 1   MNSAPFLIFGGILAWLFVYFLRLRRFYAGEFLLGLFIFGIAITIQSIIQKASLVWFNVHA 60

Query: 61  ASKLALALWFGFSAGFVQEGIKYVFVKGMKPYKGAIVGLGFGIAEVILLAVAVTIEGPSN 120
             KL ++LW GF AGF+QEGIKY+FVKGM PYKGA+VGLGFGIAEVILLAV  T+ G SN
Sbjct: 61  --KLLISLWLGFLAGFIQEGIKYIFVKGMTPYKGAMVGLGFGIAEVILLAVVATLAGSSN 118

Query: 121 VPWFLLVAALVERFSAVLFHVASTSLLSSSNSLVFLGVFAVHGVVDSIASYSLLINLVES 180
           VP +LLVA+  ERF AV+FHVASTSLL+SSN  +FLGVF VHG+VD++ASYS L  ++ +
Sbjct: 119 VPLYLLVASATERFFAVVFHVASTSLLASSNLRIFLGVFTVHGLVDTLASYSQLSRVLNT 178

Query: 181 PKVFWVEAIVGGIALVMLKFALPRIKIEEEEGPKW 215
           PKVF +EA+ G  AL +L  +LPRI++E+EEGPKW
Sbjct: 179 PKVFLIEAVFGVFALFLLLISLPRIRVEKEEGPKW 213


>pir||E75091 hypothetical protein PAB1625 - Pyrococcus abyssi (strain Orsay)
           >gi|5458546|emb|CAB50034.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 209
           
 Score = 84.7 bits (206), Expect = 9e-16
 Identities = 64/201 (31%), Positives = 103/201 (50%), Gaps = 9/201 (4%)

Query: 7   IILGGALAWVFLYFLRLKKFYPGEFILGIFAFVIAMAIQNMIQRTPLLWFNLSSASKLAL 66
           ++LG  LA + +YFL  + F    F LGI   +IA+ IQ  +Q   +   +  +   L +
Sbjct: 13  LLLGYFLAILTVYFLGYE-FSIKPFALGIVGIIIALIIQFPLQLLVIFLRDKLNLGTLLV 71

Query: 67  ALWFGFSAGFVQEGIKYVFVKGMKPYKGAIVGLGFGIAEVILLAVAVTIEGPSNVPWFLL 126
           ++  GFSAGF QE +KY+F+ G +   G + GLG G  EV+     V  E         L
Sbjct: 72  SIGLGFSAGFSQELVKYLFLHGKEVSTGIMFGLGIGFFEVLYAIPVVFYEEQLPEHMKKL 131

Query: 127 V-----AALVERFSAVLFHVASTSLLSSSNSLVFLGVFAVHGVVDSIASYSLLINLVESP 181
           V         ER+   LFH+A++++L+ +   V +    +HG+VDS+A    + NL ES 
Sbjct: 132 VEKNSWLGAWERYFGTLFHIATSAILTYAGLGVLVLFMLLHGLVDSLAE---MHNLGESK 188

Query: 182 KVFWVEAIVGGIALVMLKFAL 202
           K  ++  ++  I  V+L  +L
Sbjct: 189 KALFLGEVLLSILSVLLILSL 209


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.143    0.434 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72892405
Number of Sequences: 2977
Number of extensions: 2662738
Number of successful extensions: 8362
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8358
Number of HSP's gapped (non-prelim): 3
length of query: 215
length of database: 189,106,746
effective HSP length: 50
effective length of query: 165
effective length of database: 159,182,396
effective search space: 26265095340
effective search space used: 26265095340
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)