BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0331 (PAB0331) DE:Hypothetical protein
         (114 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75166 hypothetical protein PAB0331 - Pyrococcus abyssi (st...   225  1e-58
gi|11499785 conserved hypothetical protein [Archaeoglobus fulgid...   116  6e-26

>pir||G75166 hypothetical protein PAB0331 - Pyrococcus abyssi (strain Orsay)
           >gi|5457924|emb|CAB49414.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 114
           
 Score =  225 bits (567), Expect = 1e-58
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MVNEAVRKLRKEIRSGLYSYLILLILNENEKLHGYAIRKRLEELTDGKLVPSEGALYSIL 60
           MVNEAVRKLRKEIRSGLYSYLILLILNENEKLHGYAIRKRLEELTDGKLVPSEGALYSIL
Sbjct: 1   MVNEAVRKLRKEIRSGLYSYLILLILNENEKLHGYAIRKRLEELTDGKLVPSEGALYSIL 60

Query: 61  KMLKKYKLVEDYWAEVGGRVRRYYQITELGKEVLDEIKEEIREIRIILERIEKG 114
           KMLKKYKLVEDYWAEVGGRVRRYYQITELGKEVLDEIKEEIREIRIILERIEKG
Sbjct: 61  KMLKKYKLVEDYWAEVGGRVRRYYQITELGKEVLDEIKEEIREIRIILERIEKG 114


>gi|11499785 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7451326|pir||C69525 conserved hypothetical protein
           AF2203 - Archaeoglobus fulgidus
           >gi|2648321|gb|AAB89049.1| (AE000953) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 119
           
 Score =  116 bits (289), Expect = 6e-26
 Identities = 58/110 (52%), Positives = 83/110 (74%), Gaps = 2/110 (1%)

Query: 4   EAVRKLRKEIRSGLYSYLILLILNENEKLHGYAIRKRLEELTDGKLVPSEGALYSILKML 63
           + +++LRKEIRSG+YSY +L IL EN ++HGYAIRK  E L+ G+ VPSEGALY +LK L
Sbjct: 6   KVLKRLRKEIRSGIYSYAVLNIL-ENGEMHGYAIRKSFENLSSGEFVPSEGALYDLLKRL 64

Query: 64  KKYKLVEDYWAEVGGRVRRYYQITELGKEVLDEIKEEIREIRIILERIEK 113
           +K  LVE +W E   R R+ Y++TELGK VL +++ EI  +R ++E++E+
Sbjct: 65  QKQGLVESFWVE-DTRPRKCYRLTELGKVVLKDLRREISILRNVIEKVEE 113


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.142    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40832454
Number of Sequences: 2977
Number of extensions: 1642899
Number of successful extensions: 5542
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5539
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 189,106,746
effective HSP length: 54
effective length of query: 60
effective length of database: 156,788,448
effective search space: 9407306880
effective search space used: 9407306880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)