BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0333 (PAB0333) DE:Hypothetical protein
         (259 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75167 hypothetical protein PAB0333 - Pyrococcus abyssi (st...   490  e-138
pir||G71048 hypothetical protein PH1679 - Pyrococcus horikoshii ...   444  e-124

>pir||A75167 hypothetical protein PAB0333 - Pyrococcus abyssi (strain Orsay)
           >gi|5457926|emb|CAB49416.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 259
           
 Score =  490 bits (1248), Expect = e-138
 Identities = 259/259 (100%), Positives = 259/259 (100%)

Query: 1   MIPILTFLLIVLISAIIVRIGAVALEMTGLSKDVAAFQAQSAFSGVGFTTSESEYVVSHP 60
           MIPILTFLLIVLISAIIVRIGAVALEMTGLSKDVAAFQAQSAFSGVGFTTSESEYVVSHP
Sbjct: 1   MIPILTFLLIVLISAIIVRIGAVALEMTGLSKDVAAFQAQSAFSGVGFTTSESEYVVSHP 60

Query: 61  VRRKIIRILMLLGSAGITSAIATLVLSFVGTTKEEASSRIVVLLIGIISLYIFFRSKFIE 120
           VRRKIIRILMLLGSAGITSAIATLVLSFVGTTKEEASSRIVVLLIGIISLYIFFRSKFIE
Sbjct: 61  VRRKIIRILMLLGSAGITSAIATLVLSFVGTTKEEASSRIVVLLIGIISLYIFFRSKFIE 120

Query: 121 RLMRRAIRRILSRLAPSLRIIDYSQLLGITKGYSIVQIKVKKRSWLADKTLRELQLDKEG 180
           RLMRRAIRRILSRLAPSLRIIDYSQLLGITKGYSIVQIKVKKRSWLADKTLRELQLDKEG
Sbjct: 121 RLMRRAIRRILSRLAPSLRIIDYSQLLGITKGYSIVQIKVKKRSWLADKTLRELQLDKEG 180

Query: 181 VLVLGIYRNVEGKKVYLGAPHGDTKILPGDELILYGPEQVLMSLSKRLKGAKGEREHIEA 240
           VLVLGIYRNVEGKKVYLGAPHGDTKILPGDELILYGPEQVLMSLSKRLKGAKGEREHIEA
Sbjct: 181 VLVLGIYRNVEGKKVYLGAPHGDTKILPGDELILYGPEQVLMSLSKRLKGAKGEREHIEA 240

Query: 241 MEMAKARRMQEEREAGIGV 259
           MEMAKARRMQEEREAGIGV
Sbjct: 241 MEMAKARRMQEEREAGIGV 259


>pir||G71048 hypothetical protein PH1679 - Pyrococcus horikoshii
           >gi|3258108|dbj|BAA30791.1| (AP000006) 259aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 259
           
 Score =  444 bits (1129), Expect = e-124
 Identities = 225/259 (86%), Positives = 249/259 (95%)

Query: 1   MIPILTFLLIVLISAIIVRIGAVALEMTGLSKDVAAFQAQSAFSGVGFTTSESEYVVSHP 60
           MI I+T LL+VLISAIIVRIGAVALEMTGLS+DVAAFQAQSAFSGVGFTTSESEYVVSHP
Sbjct: 1   MITIITLLLVVLISAIIVRIGAVALEMTGLSRDVAAFQAQSAFSGVGFTTSESEYVVSHP 60

Query: 61  VRRKIIRILMLLGSAGITSAIATLVLSFVGTTKEEASSRIVVLLIGIISLYIFFRSKFIE 120
           VRR+IIRILMLLGSAG+TSAIATLVLSFVGTTKEEA  R+VVLLIG+++LY+FFRSKFIE
Sbjct: 61  VRRRIIRILMLLGSAGVTSAIATLVLSFVGTTKEEAGYRMVVLLIGLLALYLFFRSKFIE 120

Query: 121 RLMRRAIRRILSRLAPSLRIIDYSQLLGITKGYSIVQIKVKKRSWLADKTLRELQLDKEG 180
           R+MR+AI++ LSRLAPSLR+IDYSQLLGIT+GYSIVQIKVK+RSWLADKTLR+LQLDKEG
Sbjct: 121 RVMRKAIKKGLSRLAPSLRVIDYSQLLGITRGYSIVQIKVKRRSWLADKTLRDLQLDKEG 180

Query: 181 VLVLGIYRNVEGKKVYLGAPHGDTKILPGDELILYGPEQVLMSLSKRLKGAKGEREHIEA 240
           VLVLGIYR V G++VYLGAPHG TK+LPGDELILYGPE VLMSLSKRLKGAKGE+EH+EA
Sbjct: 181 VLVLGIYRKVNGRRVYLGAPHGSTKVLPGDELILYGPEDVLMSLSKRLKGAKGEKEHVEA 240

Query: 241 MEMAKARRMQEEREAGIGV 259
           MEMAKARR+QEEREAGI V
Sbjct: 241 MEMAKARRVQEEREAGISV 259


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.140    0.377 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80263791
Number of Sequences: 2977
Number of extensions: 3072634
Number of successful extensions: 8970
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8968
Number of HSP's gapped (non-prelim): 2
length of query: 259
length of database: 189,106,746
effective HSP length: 58
effective length of query: 201
effective length of database: 154,394,500
effective search space: 31033294500
effective search space used: 31033294500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)