BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0334 (PAB0334) DE:Hypothetical protein
(481 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75167 hypothetical protein PAB0334 - Pyrococcus abyssi (st... 973 0.0
pir||F71048 hypothetical protein PH1678 - Pyrococcus horikoshii ... 848 0.0
>pir||B75167 hypothetical protein PAB0334 - Pyrococcus abyssi (strain Orsay)
>gi|5457927|emb|CAB49417.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 481
Score = 973 bits (2488), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MCEYTYSNGKKCRRKPLKGSKYCSLHIPFEEGELLYGEKIKYIKRRAFERALERGIRHFE 60
MCEYTYSNGKKCRRKPLKGSKYCSLHIPFEEGELLYGEKIKYIKRRAFERALERGIRHFE
Sbjct: 1 MCEYTYSNGKKCRRKPLKGSKYCSLHIPFEEGELLYGEKIKYIKRRAFERALERGIRHFE 60
Query: 61 GVQLYDVVILNKEFDYPIIFKNSRIKRIIIASSRLKSLTLIETVVDYLIVADSQVDFLYI 120
GVQLYDVVILNKEFDYPIIFKNSRIKRIIIASSRLKSLTLIETVVDYLIVADSQVDFLYI
Sbjct: 61 GVQLYDVVILNKEFDYPIIFKNSRIKRIIIASSRLKSLTLIETVVDYLIVADSQVDFLYI 120
Query: 121 NGGSAYGISICSVSFSSSILIRNSSVRYVMINSTEFVPKEVTAEEEFGEKGRMAGRIELS 180
NGGSAYGISICSVSFSSSILIRNSSVRYVMINSTEFVPKEVTAEEEFGEKGRMAGRIELS
Sbjct: 121 NGGSAYGISICSVSFSSSILIRNSSVRYVMINSTEFVPKEVTAEEEFGEKGRMAGRIELS 180
Query: 181 NLKDVRRIALNSKYPLISKIAGELGIKLPLDKKRPVKVHALNITGVNFDESPRFKRQVRV 240
NLKDVRRIALNSKYPLISKIAGELGIKLPLDKKRPVKVHALNITGVNFDESPRFKRQVRV
Sbjct: 181 NLKDVRRIALNSKYPLISKIAGELGIKLPLDKKRPVKVHALNITGVNFDESPRFKRQVRV 240
Query: 241 FINGFSGQLTFENLSIPGHVEIVNSRVRYPEFVHVTIHNNLVLRNTKLYSDENWNLAYLP 300
FINGFSGQLTFENLSIPGHVEIVNSRVRYPEFVHVTIHNNLVLRNTKLYSDENWNLAYLP
Sbjct: 241 FINGFSGQLTFENLSIPGHVEIVNSRVRYPEFVHVTIHNNLVLRNTKLYSDENWNLAYLP 300
Query: 301 NLLAELNVYGFIVIENCQFNNPYLAEVFYRIARTTWEGSGDKENADEYYYLEMLARRKRV 360
NLLAELNVYGFIVIENCQFNNPYLAEVFYRIARTTWEGSGDKENADEYYYLEMLARRKRV
Sbjct: 301 NLLAELNVYGFIVIENCQFNNPYLAEVFYRIARTTWEGSGDKENADEYYYLEMLARRKRV 360
Query: 361 IQHYRRGPKTLRKTFKLLEVLFEFLFADLTCKYGTDWKRPVFLWLSLVIFAFPLFYALTN 420
IQHYRRGPKTLRKTFKLLEVLFEFLFADLTCKYGTDWKRPVFLWLSLVIFAFPLFYALTN
Sbjct: 361 IQHYRRGPKTLRKTFKLLEVLFEFLFADLTCKYGTDWKRPVFLWLSLVIFAFPLFYALTN 420
Query: 421 SVTPVSSLMDYVYFSIVTATTLGYGDLHPIGIGKVIASIEAIFGMFMWAVFLTVFARKYM 480
SVTPVSSLMDYVYFSIVTATTLGYGDLHPIGIGKVIASIEAIFGMFMWAVFLTVFARKYM
Sbjct: 421 SVTPVSSLMDYVYFSIVTATTLGYGDLHPIGIGKVIASIEAIFGMFMWAVFLTVFARKYM 480
Query: 481 R 481
R
Sbjct: 481 R 481
>pir||F71048 hypothetical protein PH1678 - Pyrococcus horikoshii
>gi|3258107|dbj|BAA30790.1| (AP000006) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 848 bits (2167), Expect = 0.0
Identities = 401/481 (83%), Positives = 447/481 (92%)
Query: 1 MCEYTYSNGKKCRRKPLKGSKYCSLHIPFEEGELLYGEKIKYIKRRAFERALERGIRHFE 60
MCEYTYSNGKKCRRKPLKGSKYCSLHIPFEEGELLYG++IKYIK+RAFERALERGIR+FE
Sbjct: 1 MCEYTYSNGKKCRRKPLKGSKYCSLHIPFEEGELLYGDRIKYIKKRAFERALERGIRNFE 60
Query: 61 GVQLYDVVILNKEFDYPIIFKNSRIKRIIIASSRLKSLTLIETVVDYLIVADSQVDFLYI 120
GV+LYDV+I+ KE + +IF+NS IKR++I +S++KSL+LI+T +D L++ +S+VDF Y+
Sbjct: 61 GVKLYDVIIVGKEINEALIFRNSIIKRLVIVTSKIKSLSLIDTTIDTLVIVNSEVDFFYV 120
Query: 121 NGGSAYGISICSVSFSSSILIRNSSVRYVMINSTEFVPKEVTAEEEFGEKGRMAGRIELS 180
NGGS YG+SICSV FSSSIL R+SS+RYVMINSTEF PKEVT EEEFGEK R+AGRIEL+
Sbjct: 121 NGGSIYGVSICSVKFSSSILFRDSSIRYVMINSTEFSPKEVTTEEEFGEKVRIAGRIELA 180
Query: 181 NLKDVRRIALNSKYPLISKIAGELGIKLPLDKKRPVKVHALNITGVNFDESPRFKRQVRV 240
NLKDVRRIALNSKYPL++KI E GIKL LD+K+PV+VH L ITGV FDESPRF++QVR+
Sbjct: 181 NLKDVRRIALNSKYPLMAKIMEEFGIKLSLDRKKPVRVHTLTITGVEFDESPRFRKQVRI 240
Query: 241 FINGFSGQLTFENLSIPGHVEIVNSRVRYPEFVHVTIHNNLVLRNTKLYSDENWNLAYLP 300
FIN FSGQL FENLS+PGHVEIVNSRVRYPEFVHV IHNNLVLRNT+LYSDENWNLAYLP
Sbjct: 241 FINRFSGQLIFENLSVPGHVEIVNSRVRYPEFVHVIIHNNLVLRNTRLYSDENWNLAYLP 300
Query: 301 NLLAELNVYGFIVIENCQFNNPYLAEVFYRIARTTWEGSGDKENADEYYYLEMLARRKRV 360
NLLAELNVYGFIVI+NCQFNNPYLAEVFYRIARTTWEGSGDKENADEYYYLEMLARRK+V
Sbjct: 301 NLLAELNVYGFIVIDNCQFNNPYLAEVFYRIARTTWEGSGDKENADEYYYLEMLARRKKV 360
Query: 361 IQHYRRGPKTLRKTFKLLEVLFEFLFADLTCKYGTDWKRPVFLWLSLVIFAFPLFYALTN 420
IQHYR+GP+TL+K KLLEVLFEFLFADLTCKYGTDWKRPVFLW+ LVIF FP+FYALT
Sbjct: 361 IQHYRKGPRTLKKMVKLLEVLFEFLFADLTCKYGTDWKRPVFLWMGLVIFVFPVFYALTK 420
Query: 421 SVTPVSSLMDYVYFSIVTATTLGYGDLHPIGIGKVIASIEAIFGMFMWAVFLTVFARKYM 480
SV P SSL DYVYFSIVTATTLGYGDLHPIG+GKVIASIEAIFGMFMWAVFLTVFARKYM
Sbjct: 421 SVVPTSSLFDYVYFSIVTATTLGYGDLHPIGVGKVIASIEAIFGMFMWAVFLTVFARKYM 480
Query: 481 R 481
R
Sbjct: 481 R 481
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.142 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174872407
Number of Sequences: 2977
Number of extensions: 7285768
Number of successful extensions: 20796
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20791
Number of HSP's gapped (non-prelim): 2
length of query: 481
length of database: 189,106,746
effective HSP length: 54
effective length of query: 427
effective length of database: 156,788,448
effective search space: 66948667296
effective search space used: 66948667296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 167 (69.5 bits)