BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0335 (PAB0335) DE:Hypothetical protein
(379 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75167 hypothetical protein PAB0335 - Pyrococcus abyssi (st... 737 0.0
pir||C71048 hypothetical protein PH1675 - Pyrococcus horikoshii ... 613 e-174
pir||G72567 hypothetical protein APE1825 - Aeropyrum pernix (str... 252 6e-66
pir||B83450 conserved hypothetical protein PA1572 [imported] - P... 231 1e-59
gb|AAG19237.1| (AE005019) Vng0764c [Halobacterium sp. NRC-1] 210 2e-53
gb|AAK41157.1| Conserved hypothetical protein [Sulfolobus solfat... 197 2e-49
emb|CAC12196.1| (AL445066) conserved hypothetical protein [Therm... 176 3e-43
>pir||C75167 hypothetical protein PAB0335 - Pyrococcus abyssi (strain Orsay)
>gi|5457928|emb|CAB49418.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 379
Score = 737 bits (1883), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MISVIGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNF 60
MISVIGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNF
Sbjct: 1 MISVIGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNF 60
Query: 61 ITGPGPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLV 120
ITGPGPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLV
Sbjct: 61 ITGPGPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLV 120
Query: 121 VFAGGDGTARDIVEVIDEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEER 180
VFAGGDGTARDIVEVIDEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEER
Sbjct: 121 VFAGGDGTARDIVEVIDEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEER 180
Query: 181 AVMDLDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEIIE 240
AVMDLDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEIIE
Sbjct: 181 AVMDLDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEIIE 240
Query: 241 NDGIYFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRNPR 300
NDGIYFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRNPR
Sbjct: 241 NDGIYFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRNPR 300
Query: 301 VVVTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKDGFVRVYTGDKSVDSKF 360
VVVTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKDGFVRVYTGDKSVDSKF
Sbjct: 301 VVVTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKDGFVRVYTGDKSVDSKF 360
Query: 361 KGYIKVRVSPWMERLVKVI 379
KGYIKVRVSPWMERLVKVI
Sbjct: 361 KGYIKVRVSPWMERLVKVI 379
>pir||C71048 hypothetical protein PH1675 - Pyrococcus horikoshii
>gi|3258104|dbj|BAA30787.1| (AP000006) 377aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 377
Score = 613 bits (1563), Expect = e-174
Identities = 293/375 (78%), Positives = 346/375 (92%)
Query: 5 IGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNFITGP 64
+GLIINPIAGMGGRVALKGTDGVVEEA++RGARPI+Q LV+LFL+EL SY++ V F+TGP
Sbjct: 3 VGLIINPIAGMGGRVALKGTDGVVEEAVKRGARPISQKLVELFLKELESYNVAVEFLTGP 62
Query: 65 GPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLVVFAG 124
GPLGED L++F FPYEVI+HREI +R+I+GVKIPDTSAEDTK+LA+E++K G L++FAG
Sbjct: 63 GPLGEDALKKFEFPYEVIKHREIGYRDIMGVKIPDTSAEDTKVLAKEIVKNGAELLLFAG 122
Query: 125 GDGTARDIVEVIDEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEERAVMD 184
GDGTARD+ E +D+ +P+LGIPTGVKMFSG+FATSPEDAARI+VEFLKGNAKLEER VMD
Sbjct: 123 GDGTARDVTEAVDKDIPILGIPTGVKMFSGVFATSPEDAARILVEFLKGNAKLEERPVMD 182
Query: 185 LDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEIIENDGI 244
LDE+AYRRD +KA+KF +AITPIVE L+QGSKEAT +DE E+EALA+A+AEEI+ +DGI
Sbjct: 183 LDENAYRRDRVKAKKFSEAITPIVEMLVQGSKEATTIDESAELEALADAVAEEILSSDGI 242
Query: 245 YFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRNPRVVVT 304
YFLGAGSTIKRIKDK+GIEGTLLGVD+V V+ G+ KLLVKDASEKDLLKFLD+ P++VVT
Sbjct: 243 YFLGAGSTIKRIKDKIGIEGTLLGVDVVRVENGKAKLLVKDASEKDLLKFLDKKPKIVVT 302
Query: 305 IIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKDGFVRVYTGDKSVDSKFKGYI 364
IIGGLNFLFGRGNQQFSPEVL+++GKE VIVVAT SK+KDGFVRVYTGD+ VD KFKGYI
Sbjct: 303 IIGGLNFLFGRGNQQFSPEVLKKVGKEGVIVVATPSKVKDGFVRVYTGDEDVDEKFKGYI 362
Query: 365 KVRVSPWMERLVKVI 379
+VRVSPWME+LVKVI
Sbjct: 363 RVRVSPWMEKLVKVI 377
>pir||G72567 hypothetical protein APE1825 - Aeropyrum pernix (strain K1)
>gi|5105515|dbj|BAA80828.1| (AP000062) 342aa long
hypothetical protein [Aeropyrum pernix]
Length = 342
Score = 252 bits (636), Expect = 6e-66
Identities = 146/353 (41%), Positives = 217/353 (61%), Gaps = 23/353 (6%)
Query: 35 GARPIAQDLVKLFLE----ELSSYDLDVNFITGPGPLGEDILREFNFPYEVIRHREIKFR 90
GA +A + FLE EL+S + V + PG +GE + RE R R +K
Sbjct: 3 GADLVAPRRARAFLESLDDELASKGIQVKLLLPPGRMGESVAREAG------RLRAVKVE 56
Query: 91 EILGV--KIPDTSAEDTKILAREMLKRGVSLVVFAGGDGTARDIVEVIDEKVPVLGIPTG 148
+ V +I T+A DT AR ++ V L+VFAGGDGTARDI+ +D ++PVLGIP+G
Sbjct: 57 TVPCVDPRIWPTTAHDTIRCART-IENEVDLLVFAGGDGTARDILNAVDMRLPVLGIPSG 115
Query: 149 VKMFSGIFATSPEDAARIVVEFLKGNAKLEERAVMDLDEDAYRRDELKARKFYDAITPIV 208
VK++SG+FA +P AAR+V FL+G A+LEER V+D+DE+ +RRD L R F + P+
Sbjct: 116 VKVYSGVFAVNPRSAARVVTAFLEGRARLEERPVVDVDEEEFRRDRLVLRTFGKLLVPVA 175
Query: 209 ERLIQGSKEATPLDEEEEIEALAEALAEEIIENDGIYFLGAGSTIKRIKDKLGIEGTLLG 268
E +++ K L E +E +A AEE+ + +Y LG G T+ RI + LG+ TLLG
Sbjct: 176 EGVVESPK---TLAGGEGVEDIARFFAEELYRDCTLYILGPGRTVARIAEYLGVRKTLLG 232
Query: 269 VDIVEVKGGEVKLLVKDASEKDLLKFLDRNPRVVVTI--IGGLNFLFGRGNQQFSPEVLR 326
VD V K +L+ KD E+ +++ ++++PR V+ + IGG F+ GRGNQQ SP V+R
Sbjct: 233 VDAVHNK----RLVGKDLDEEAIIELIEKHPRTVIVLSPIGGQGFILGRGNQQISPRVVR 288
Query: 327 RIGKENVIVVATRSKIKD-GFVRVYTGDKSVDSKFKGYIKVRVSPWMERLVKV 378
++GKE ++VV+ K++ G +RV TGD VD +GYI+V + ++V+V
Sbjct: 289 KVGKEGIVVVSDPEKLRSLGRLRVDTGDDDVDRMMRGYIRVLIGYGKWKMVRV 341
>pir||B83450 conserved hypothetical protein PA1572 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947534|gb|AAG04961.1|AE004585_9 (AE004585)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 381
Score = 231 bits (582), Expect = 1e-59
Identities = 150/368 (40%), Positives = 213/368 (57%), Gaps = 22/368 (5%)
Query: 5 IGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNFITGP 64
+GL++NP+AG+GG VALKG+DGV EA+ RGA P A + ++ +E L + F+T P
Sbjct: 6 LGLVVNPLAGLGGPVALKGSDGVAAEALARGAEPRALERTRIAVECLLPLVEKIEFLTFP 65
Query: 65 GPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLVVFAG 124
G +G ++L F RHR + E G +SA DT++ + + GV+L++FAG
Sbjct: 66 GAMGGELLERMGF-----RHRLLG--EWQGAV---SSAADTRLAIERLQEAGVALILFAG 115
Query: 125 GDGTARDIVEVIDEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGN-AKLEERAVM 183
GDGTARD+ V+ E+ PVLGIP GVK+ SG++A SP A + ++G +L V
Sbjct: 116 GDGTARDVAGVVREQQPVLGIPAGVKIHSGVYAISPRAAGELARRLVEGGLVRLASGEVR 175
Query: 184 DLDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEIIENDG 243
DLDE+A R + AR + + P +Q K+A EE + LA+ LAE DG
Sbjct: 176 DLDEEALRAGRVAARWYGEMTVPEEGHFMQHVKQAGMESEELVLVDLADWLAEN--WEDG 233
Query: 244 I-YFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRNPR-V 301
+ Y LG GST+ + LG+E TLLGVD++E G V + +D E L + +D +P +
Sbjct: 234 VRYVLGPGSTLHGLARNLGLETTLLGVDVLE--NGAV--IARDVDEARLFELVDGHPAYL 289
Query: 302 VVTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKDGFVR---VYTGDKSVDS 358
+VT IGG + GRGNQQ SP VLR IG E + VVAT+ K+ R V +GD +D
Sbjct: 290 LVTAIGGQGHVIGRGNQQISPRVLRAIGLERMRVVATKRKLGTLGGRPLLVDSGDPVLDD 349
Query: 359 KFKGYIKV 366
F I+V
Sbjct: 350 SFPDTIRV 357
>gb|AAG19237.1| (AE005019) Vng0764c [Halobacterium sp. NRC-1]
Length = 358
Score = 210 bits (530), Expect = 2e-53
Identities = 138/382 (36%), Positives = 201/382 (52%), Gaps = 34/382 (8%)
Query: 5 IGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNFITGP 64
+G+++NPIAGMGGRV LKGTDG V EA +RGA A + L+ L DV+ +T
Sbjct: 4 VGVVVNPIAGMGGRVGLKGTDGNVAEARKRGADQRAPQRARTALDALRDAAGDVSVVTYD 63
Query: 65 GPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLVVFAG 124
P+G + F V+ H P ++A DT+ + GV +++F G
Sbjct: 64 EPMGGGVAAAAGFTPTVVGH----------PTTPASTAADTRAAVEAFIDHGVDVILFVG 113
Query: 125 GDGTARDIVEVI---DEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEERA 181
GDGTA D+ + D VPVLG+P GVK++S +FA P A R+ F R
Sbjct: 114 GDGTATDVATAVTAHDASVPVLGVPAGVKVYSAVFAVQPAAAGRVAATF----EDTTTRE 169
Query: 182 VMDLDEDAYRRDELKARKFYDAITPIVE--RLIQGSKEATPLDEEEEIEALAEALAEEII 239
V D+DE AYR E++ TP+ E +Q +K+A ALA +A+ +
Sbjct: 170 VSDIDEGAYRDGEVQTTLRGVVATPVTEGADALQPAKQA----YAGTTGALAAGVADSV- 224
Query: 240 ENDGI-YFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRN 298
DG+ Y LG G T+ I D LG+ G+ LGVD+ + L+V+D S ++ L +
Sbjct: 225 -RDGVTYVLGPGGTLAEIADALGVSGSPLGVDVYR----DGALVVRDGSASEITAALGTD 279
Query: 299 PRVVVTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKI-KDGFVRVYTGDKSVD 357
V V+ IGG F+FGRGN Q SP + I + V VVA+ K+ + G +RV TG + D
Sbjct: 280 NVVYVSPIGGQGFVFGRGNDQISPAI---IDRSEVRVVASPQKLDQTGVLRVDTGSEDTD 336
Query: 358 SKFKGYIKVRVSPWMERLVKVI 379
+ +G+ +VR + +RLV V+
Sbjct: 337 ASLRGWQRVRTGRFEKRLVNVV 358
>gb|AAK41157.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 197 bits (495), Expect = 2e-49
Identities = 135/373 (36%), Positives = 203/373 (54%), Gaps = 34/373 (9%)
Query: 1 MISVIGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNF 60
M+ IG ++NP AG GGR+ KG+D + E P V FL + D +
Sbjct: 1 MLKKIGFLVNPYAGSGGRIGKKGSDELNIE------NPEIPMRVTRFLSKAPE---DAIY 51
Query: 61 ITGPGPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLV 120
+T +GE + YE I E K T+ DT RE +KRGV ++
Sbjct: 52 LTPRLKMGEIHFTKSKLKYETIPIGEKK----------KTTRYDTIDSVREFVKRGVDII 101
Query: 121 VFAGGDGTARDIVEVID-EKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEE 179
VF GGDGTARD+ E + ++P+LG+P GVKM SG+FA +PE AA ++ +FL AK +
Sbjct: 102 VFVGGDGTARDVAEGLQGAEIPILGVPAGVKMHSGVFANTPEAAAILLTKFLHDEAKTVK 161
Query: 180 RAVMDLDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEII 239
++D+DE+AYR+ + ++ +T L+ SK E+E E +A+ II
Sbjct: 162 EEILDIDEEAYRKGTYFVKLYHIVLTISSNNLLTPSKGEMQYSEDELGE-----IADYII 216
Query: 240 EN--DGI-YFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLD 296
+N D I Y +G GST+K I+ KL I+ LG+DI+ K KL+ ++ + DL+ L
Sbjct: 217 DNMDDNITYIMGPGSTVKYIERKLKIDTPFLGIDIIRGK----KLIKENVNYFDLIN-LT 271
Query: 297 RNPRVVVTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKD-GFVRVYTGDKS 355
++V+T IG FL GRGN + P LR++ K+++IVV+T SK+ +R+ TGD++
Sbjct: 272 GELKIVLTPIGKQGFLIGRGNLELGPIFLRKVKKDDLIVVSTFSKLYTINCLRIDTGDEN 331
Query: 356 VDSKFKGYIKVRV 368
+D F G V V
Sbjct: 332 LDKLFSGVYNVIV 344
>emb|CAC12196.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 354
Score = 176 bits (442), Expect = 3e-43
Identities = 126/377 (33%), Positives = 194/377 (51%), Gaps = 34/377 (9%)
Query: 5 IGLIINPIAGMGGRVALKGTDGVVEEAIRRGARPIAQDLVKLFLEELSSYDLDVNFITGP 64
+ +NP+AG G LKG+DG+ E + I + + L L + S Y FI
Sbjct: 9 VAFFVNPLAGYGSFFNLKGSDGLKIEDPEKSIS-IRRSMEFLRLVDFSRYF----FIVPS 63
Query: 65 GPLGEDILREFNFPYEVIRHREIKFREILGVKIPDTSAEDTKILAREMLKRGVSLVVFAG 124
G +GE + F Y VI ++ +DT R + ++VFAG
Sbjct: 64 GYMGEREVSAFTSRYSVIYQAHWP-----------STRDDTLGFLRNV--GDADILVFAG 110
Query: 125 GDGTARDIVEVIDEKVPVLGIPTGVKMFSGIFATSPEDAARIVVEFLKGNAKLEERAVMD 184
GDGTARDI+ ++PV+G+P GVKM+S +FA SP AA+ + K + + + VMD
Sbjct: 111 GDGTARDILSA-GVRIPVIGVPAGVKMYSSVFAISPSHAAQSLNAISKPDIRTADAEVMD 169
Query: 185 LDEDAYRRDELKARKFYDAITPIVERLIQGSKEATPLDEEEEIEALAEALAEEIIE--ND 242
+DE+ YRR L AR + PI+ ++ SK + E+I AE II+ +D
Sbjct: 170 IDEELYRRGVLSARSYGYLKVPILNDIVMNSKAEYDMGGVEDI-------AEYIIDHMDD 222
Query: 243 GIYFLGAGSTIKRIKDKLGIEGTLLGVDIVEVKGGEVKLLVKDASEKDLLKFLDRNPRVV 302
Y +G G+T K I+ ++GI L DI+ + KL+ +DA+E+D+ + R++
Sbjct: 223 RYYVIGPGNTCKTIETEMGINTNPLAFDIIRNR----KLIKEDAAEQDIYDACRKGCRLI 278
Query: 303 VTIIGGLNFLFGRGNQQFSPEVLRRIGKENVIVVATRSKIKDGFVRVYTGDKSVDSKFKG 362
++ IGG NFL GRGN+Q S VL + E++IVVA+ SK + +R D V+ G
Sbjct: 279 ISPIGGQNFLIGRGNKQISSRVLELLDAEDIIVVASPSKAET--IRALYVDSDVNPWKNG 336
Query: 363 YIKVRVSPWMERLVKVI 379
Y++V ++V VI
Sbjct: 337 YVRVLSGYGKYKIVPVI 353
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.143 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139308287
Number of Sequences: 2977
Number of extensions: 6291705
Number of successful extensions: 19972
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19943
Number of HSP's gapped (non-prelim): 8
length of query: 379
length of database: 189,106,746
effective HSP length: 57
effective length of query: 322
effective length of database: 154,992,987
effective search space: 49907741814
effective search space used: 49907741814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)