BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0336 (PAB0336) DE:Hypothetical protein
(366 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75167 hypothetical protein PAB0336 - Pyrococcus abyssi (st... 706 0.0
pir||B71048 hypothetical protein PH1674 - Pyrococcus horikoshii ... 427 e-119
pir||E75167 hypothetical protein PAB0337 - Pyrococcus abyssi (st... 197 2e-49
pir||A71048 hypothetical protein PH1673 - Pyrococcus horikoshii ... 190 3e-47
sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2... 116 4e-25
>pir||D75167 hypothetical protein PAB0336 - Pyrococcus abyssi (strain Orsay)
>gi|5457929|emb|CAB49419.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 706 bits (1802), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ
Sbjct: 1 MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
Query: 61 VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE
Sbjct: 61 VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
Query: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSIDVRNFRKV 180
TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSIDVRNFRKV
Sbjct: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSIDVRNFRKV 180
Query: 181 MLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLGN 240
MLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLGN
Sbjct: 181 MLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLGN 240
Query: 241 PERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVRL 300
PERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVRL
Sbjct: 241 PERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVRL 300
Query: 301 KVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKIHK 360
KVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKIHK
Sbjct: 301 KVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKIHK 360
Query: 361 SRGERP 366
SRGERP
Sbjct: 361 SRGERP 366
>pir||B71048 hypothetical protein PH1674 - Pyrococcus horikoshii
>gi|3258103|dbj|BAA30786.1| (AP000006) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 427 bits (1087), Expect = e-119
Identities = 216/371 (58%), Positives = 297/371 (79%), Gaps = 12/371 (3%)
Query: 1 MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
MRRLLG+ VA++VA SIA+IPAVSAQ+ T+T +VIL S+NEAD+TLA+KIAE++NA
Sbjct: 1 MRRLLGIFVALVVAFSIAAIPAVSAQDQGTST---IVILSSDNEADMTLAQKIAEILNAT 57
Query: 61 VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
+V TPWG+YNE+VL+EI++L P+LV+IIGGPIAVPP+YE+ L+ DFN+TV+RAGG DRAE
Sbjct: 58 LVTTPWGVYNETVLDEIVNLTPDLVIIIGGPIAVPPIYEEALK-DFNVTVLRAGGVDRAE 116
Query: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSI-DVRNFRK 179
TC++A +IRE+FP+A NVT+VVV+GWDYPALMEA+KE+GIVPLI+KNT+I D+R FRK
Sbjct: 117 TCKKAFEIIRERFPRAFENVTVVVVYGWDYPALMEALKERGIVPLIIKNTTIEDLRKFRK 176
Query: 180 VMLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLG 239
+ ++ S R M +++LGN TK + VNVTA++A+RAI +A++RL++AK+V +NS+
Sbjct: 177 IKIIRSRYAERVMRELKKKLGNNTKEVTVNVTAEIAKRAIKLAEDRLKVAKEVAKNSSKP 236
Query: 240 NPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVR 299
N + LL AE+ LELAK+AY++GKYG A GLA A++ IS+ II+SATE + +K +R
Sbjct: 237 NVDVLLVNAERDLELAKKAYEEGKYGRAFGLATAARNISEAIIKSATENSQKKLNIGVIR 296
Query: 300 LKVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKI- 358
LK+E+R+L RVL +L+ RGVDVS+EE +L+QA+ AL G+ LAK LI+ IH+EL + I
Sbjct: 297 LKIEIRVLERVLNKLKERGVDVSIEEGLLLQAKSALSKGDFRLAKTLIVLIHRELWRDIR 356
Query: 359 ------HKSRG 363
HK+RG
Sbjct: 357 ELHKAKHKTRG 367
>pir||E75167 hypothetical protein PAB0337 - Pyrococcus abyssi (strain Orsay)
>gi|5457930|emb|CAB49420.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 197 bits (496), Expect = 2e-49
Identities = 130/371 (35%), Positives = 209/371 (56%), Gaps = 28/371 (7%)
Query: 1 MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
MR LL +L+ ++ LS ++PA + + NV+ILVS+NEADLTLAEKI ELI A+
Sbjct: 1 MRSLLSILLISILVLS--ALPAQAQVK-------NVIILVSDNEADLTLAEKIGELIQAK 51
Query: 61 VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
VV+TPWG+YNESV EI NP LVLIIGGP AV P YE+ ++ I+ +R G R E
Sbjct: 52 VVVTPWGIYNESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQS-LGISYVRRWGETRVE 110
Query: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPAL---MEAMKEKGIVPLIVKNTSIDVRNF 177
T + +++ +P N + +V+GWD + E MK + ++P+ + RN
Sbjct: 111 TAISVIKFLKKDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLS------RNS 164
Query: 178 RKVMLLWSENYRRFMERF------RERLGNGTKLIEVNVTADMAERAINIAQERLELAKK 231
V + WS + F + R+ N +++ NVT ++ AI A++ + AK+
Sbjct: 165 SSVPINWSGRFIVVETPFSAGIFKKIRIPNPI-IVKANVTKEITWDAIERAEKAIIRAKR 223
Query: 232 VVENSTLGNPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHE 291
++E + + E+ L A + L AKEAY G Y A LA A++ I+D I+
Sbjct: 224 IIELTDIPQ-EKRLEIANRLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPR 282
Query: 292 KFRKVNVRLKVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIH 351
+ ++++++LR+L + RL ++G+DV ++++ +AE ALK G++ A + +
Sbjct: 283 IRLPMKLQIQMQLRLLKMLTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEA- 341
Query: 352 KELRKKIHKSR 362
KEL ++IH+ R
Sbjct: 342 KELIRQIHRGR 352
>pir||A71048 hypothetical protein PH1673 - Pyrococcus horikoshii
>gi|3258102|dbj|BAA30785.1| (AP000006) 365aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 365
Score = 190 bits (477), Expect = 3e-47
Identities = 122/336 (36%), Positives = 190/336 (56%), Gaps = 19/336 (5%)
Query: 35 NVVILVSNNEADLTLAEKIAELINAQVVITPWGLYNESVLEEILSLNPELVLIIGGPIAV 94
N +ILVS+NEADL LA+K+ EL+NA+VV+TPWG+YNES+ EI+ NP LVLIIGGP AV
Sbjct: 26 NTLILVSDNEADLALAQKVGELLNAEVVVTPWGVYNESISVEIIEKNPSLVLIIGGPKAV 85
Query: 95 PPVYEDMLRNDFNITVIRAGGNDRAETCERALNVIREKFPQALGNVTIVVVHGWDYPA-- 152
P YE L++ I +R G R ET +N IR+ +P V +VVV+GWD
Sbjct: 86 SPQYEVDLQS-VGIPYVRRWGATRVETATSVINFIRKDYPHLFKGVKLVVVYGWDLAGLS 144
Query: 153 -LMEAMKEKGIVPLIVKN--TSIDVRNFRKVMLL---WSENYRRFMERFRERLGNGTKLI 206
L E M+E ++P+ + N T++ V K++++ +S+N R + + G ++
Sbjct: 145 KLRELMRENNVIPVYISNNSTNVPVNWSGKLIVIETPFSKNIIRRLHLY------GPIIV 198
Query: 207 EVNVTADMAERAINIAQERLELAKKVVENSTLGNPERLLAEAEKKLELAKEAYKDGKYGA 266
+ NVT ++AE AI A+ ++ A+ + S L L A K L +AKEAY G Y
Sbjct: 199 KANVTREVAEEAIEKAERAIKRAEVI---SRLSGLSLGLESAYKFLGIAKEAYSQGDYLK 255
Query: 267 ALGLAVASKRISDVIIRSATEKTHEKFRKVNVRLKVELRILHRVLERLRNRGVDVSLEEK 326
A A ++ ++ II + + L+++++ L + RL +GVDV ++
Sbjct: 256 AYNFANLARAKAERIIATGIFAKPRVKMPPKLELQIQIKFLKLLTMRLEAQGVDVRGVKE 315
Query: 327 MLVQAERALKNGNVLLAKGLILQIHKELRKKIHKSR 362
++ +AE AL GN+ LA + + +EL + IH+ R
Sbjct: 316 LIAKAEDALNQGNISLAIKYVNEA-RELLRYIHRGR 350
>sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2128478|pir||C64394
hypothetical protein MJ0755 - Methanococcus jannaschii
>gi|1499574|gb|AAB98748.1| (U67521)
N-acetylmuramoyl-L-alanine amidase [Methanococcus
jannaschii]
Length = 342
Score = 116 bits (288), Expect = 4e-25
Identities = 97/338 (28%), Positives = 167/338 (48%), Gaps = 48/338 (14%)
Query: 2 RRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQV 61
++L+ +L+ + +S +IP++SA + V+LVS+N AD A ++A+ +NA V
Sbjct: 3 KKLMLLLLMAIPLVSAVAIPSISATD---------VVLVSDNCADQCTALEVADALNATV 53
Query: 62 VITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAET 121
+ T WG+YNES+++EIL+LNP+ V+IIGGP+AV Y L N ITV R GG++R ET
Sbjct: 54 ITTEWGIYNESLIDEILALNPDKVIIIGGPLAVVENYTTALEN-VGITVERIGGSNRYET 112
Query: 122 CERALNVIREKFPQALG-NVTIVVVHGWDYPALMEAM---KEKGIVPLIVKNTSIDVR-- 175
+ +F A G N T+ V HG+D AL E M K + L+ ++ V
Sbjct: 113 NANVTLRFQNQFRYAFGNNTTVCVCHGFDDIALNETMGLIKNGTCLVLLTNGVNLSVEPQ 172
Query: 176 ----NFRKVMLLWSE-----NYRRFMERFRERLGNGTKL-------IEVNVTADMAERAI 219
KV ++ + NY + M + ++ NG K+ ++V + M + I
Sbjct: 173 KLQLRINKVEIIENPICPFCNYSKLMLKLQK---NGLKIEIKQIPKVKVKL---MLQNRI 226
Query: 220 NIAQERLELAKKVVENSTLGNPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISD 279
I + R+ + K++ N T + E+KL+ ++ + +Y A + V +
Sbjct: 227 RIMERRILMLKRMGVNVT---------DLEEKLKEVEQLMEQNRYQEAYRIMVQLQEEQM 277
Query: 280 VIIRSATEKTHEKFRKVNVR-LKVELRILHRVLERLRN 316
V ++ K ++ ++ K I H+ + L N
Sbjct: 278 VRVKLHLHPMWSKMKRGKIQENKNASHIYHQNINNLTN 315
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.135 0.366
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116872107
Number of Sequences: 2977
Number of extensions: 4556630
Number of successful extensions: 22121
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22098
Number of HSP's gapped (non-prelim): 6
length of query: 366
length of database: 189,106,746
effective HSP length: 61
effective length of query: 305
effective length of database: 152,599,039
effective search space: 46542706895
effective search space used: 46542706895
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)