BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0336 (PAB0336) DE:Hypothetical protein
         (366 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75167 hypothetical protein PAB0336 - Pyrococcus abyssi (st...   706  0.0
pir||B71048 hypothetical protein PH1674 - Pyrococcus horikoshii ...   427  e-119
pir||E75167 hypothetical protein PAB0337 - Pyrococcus abyssi (st...   197  2e-49
pir||A71048 hypothetical protein PH1673 - Pyrococcus horikoshii ...   190  3e-47
sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2...   116  4e-25

>pir||D75167 hypothetical protein PAB0336 - Pyrococcus abyssi (strain Orsay)
           >gi|5457929|emb|CAB49419.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 366
           
 Score =  706 bits (1802), Expect = 0.0
 Identities = 366/366 (100%), Positives = 366/366 (100%)

Query: 1   MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
           MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ
Sbjct: 1   MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60

Query: 61  VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
           VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE
Sbjct: 61  VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120

Query: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSIDVRNFRKV 180
           TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSIDVRNFRKV
Sbjct: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSIDVRNFRKV 180

Query: 181 MLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLGN 240
           MLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLGN
Sbjct: 181 MLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLGN 240

Query: 241 PERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVRL 300
           PERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVRL
Sbjct: 241 PERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVRL 300

Query: 301 KVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKIHK 360
           KVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKIHK
Sbjct: 301 KVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKIHK 360

Query: 361 SRGERP 366
           SRGERP
Sbjct: 361 SRGERP 366


>pir||B71048 hypothetical protein PH1674 - Pyrococcus horikoshii
           >gi|3258103|dbj|BAA30786.1| (AP000006) 367aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 367
           
 Score =  427 bits (1087), Expect = e-119
 Identities = 216/371 (58%), Positives = 297/371 (79%), Gaps = 12/371 (3%)

Query: 1   MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
           MRRLLG+ VA++VA SIA+IPAVSAQ+  T+T   +VIL S+NEAD+TLA+KIAE++NA 
Sbjct: 1   MRRLLGIFVALVVAFSIAAIPAVSAQDQGTST---IVILSSDNEADMTLAQKIAEILNAT 57

Query: 61  VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
           +V TPWG+YNE+VL+EI++L P+LV+IIGGPIAVPP+YE+ L+ DFN+TV+RAGG DRAE
Sbjct: 58  LVTTPWGVYNETVLDEIVNLTPDLVIIIGGPIAVPPIYEEALK-DFNVTVLRAGGVDRAE 116

Query: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPALMEAMKEKGIVPLIVKNTSI-DVRNFRK 179
           TC++A  +IRE+FP+A  NVT+VVV+GWDYPALMEA+KE+GIVPLI+KNT+I D+R FRK
Sbjct: 117 TCKKAFEIIRERFPRAFENVTVVVVYGWDYPALMEALKERGIVPLIIKNTTIEDLRKFRK 176

Query: 180 VMLLWSENYRRFMERFRERLGNGTKLIEVNVTADMAERAINIAQERLELAKKVVENSTLG 239
           + ++ S    R M   +++LGN TK + VNVTA++A+RAI +A++RL++AK+V +NS+  
Sbjct: 177 IKIIRSRYAERVMRELKKKLGNNTKEVTVNVTAEIAKRAIKLAEDRLKVAKEVAKNSSKP 236

Query: 240 NPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEKFRKVNVR 299
           N + LL  AE+ LELAK+AY++GKYG A GLA A++ IS+ II+SATE + +K     +R
Sbjct: 237 NVDVLLVNAERDLELAKKAYEEGKYGRAFGLATAARNISEAIIKSATENSQKKLNIGVIR 296

Query: 300 LKVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHKELRKKI- 358
           LK+E+R+L RVL +L+ RGVDVS+EE +L+QA+ AL  G+  LAK LI+ IH+EL + I 
Sbjct: 297 LKIEIRVLERVLNKLKERGVDVSIEEGLLLQAKSALSKGDFRLAKTLIVLIHRELWRDIR 356

Query: 359 ------HKSRG 363
                 HK+RG
Sbjct: 357 ELHKAKHKTRG 367


>pir||E75167 hypothetical protein PAB0337 - Pyrococcus abyssi (strain Orsay)
           >gi|5457930|emb|CAB49420.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 361
           
 Score =  197 bits (496), Expect = 2e-49
 Identities = 130/371 (35%), Positives = 209/371 (56%), Gaps = 28/371 (7%)

Query: 1   MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
           MR LL +L+  ++ LS  ++PA +  +       NV+ILVS+NEADLTLAEKI ELI A+
Sbjct: 1   MRSLLSILLISILVLS--ALPAQAQVK-------NVIILVSDNEADLTLAEKIGELIQAK 51

Query: 61  VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
           VV+TPWG+YNESV  EI   NP LVLIIGGP AV P YE+  ++   I+ +R  G  R E
Sbjct: 52  VVVTPWGIYNESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQS-LGISYVRRWGETRVE 110

Query: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPAL---MEAMKEKGIVPLIVKNTSIDVRNF 177
           T    +  +++ +P    N  + +V+GWD   +    E MK + ++P+ +       RN 
Sbjct: 111 TAISVIKFLKKDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLS------RNS 164

Query: 178 RKVMLLWSENYRRFMERF------RERLGNGTKLIEVNVTADMAERAINIAQERLELAKK 231
             V + WS  +      F      + R+ N   +++ NVT ++   AI  A++ +  AK+
Sbjct: 165 SSVPINWSGRFIVVETPFSAGIFKKIRIPNPI-IVKANVTKEITWDAIERAEKAIIRAKR 223

Query: 232 VVENSTLGNPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHE 291
           ++E + +   E+ L  A + L  AKEAY  G Y  A  LA A++ I+D I+         
Sbjct: 224 IIELTDIPQ-EKRLEIANRLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPR 282

Query: 292 KFRKVNVRLKVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIH 351
               + ++++++LR+L  +  RL ++G+DV   ++++ +AE ALK G++  A   + +  
Sbjct: 283 IRLPMKLQIQMQLRLLKMLTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEA- 341

Query: 352 KELRKKIHKSR 362
           KEL ++IH+ R
Sbjct: 342 KELIRQIHRGR 352


>pir||A71048 hypothetical protein PH1673 - Pyrococcus horikoshii
           >gi|3258102|dbj|BAA30785.1| (AP000006) 365aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 365
           
 Score =  190 bits (477), Expect = 3e-47
 Identities = 122/336 (36%), Positives = 190/336 (56%), Gaps = 19/336 (5%)

Query: 35  NVVILVSNNEADLTLAEKIAELINAQVVITPWGLYNESVLEEILSLNPELVLIIGGPIAV 94
           N +ILVS+NEADL LA+K+ EL+NA+VV+TPWG+YNES+  EI+  NP LVLIIGGP AV
Sbjct: 26  NTLILVSDNEADLALAQKVGELLNAEVVVTPWGVYNESISVEIIEKNPSLVLIIGGPKAV 85

Query: 95  PPVYEDMLRNDFNITVIRAGGNDRAETCERALNVIREKFPQALGNVTIVVVHGWDYPA-- 152
            P YE  L++   I  +R  G  R ET    +N IR+ +P     V +VVV+GWD     
Sbjct: 86  SPQYEVDLQS-VGIPYVRRWGATRVETATSVINFIRKDYPHLFKGVKLVVVYGWDLAGLS 144

Query: 153 -LMEAMKEKGIVPLIVKN--TSIDVRNFRKVMLL---WSENYRRFMERFRERLGNGTKLI 206
            L E M+E  ++P+ + N  T++ V    K++++   +S+N  R +  +      G  ++
Sbjct: 145 KLRELMRENNVIPVYISNNSTNVPVNWSGKLIVIETPFSKNIIRRLHLY------GPIIV 198

Query: 207 EVNVTADMAERAINIAQERLELAKKVVENSTLGNPERLLAEAEKKLELAKEAYKDGKYGA 266
           + NVT ++AE AI  A+  ++ A+ +   S L      L  A K L +AKEAY  G Y  
Sbjct: 199 KANVTREVAEEAIEKAERAIKRAEVI---SRLSGLSLGLESAYKFLGIAKEAYSQGDYLK 255

Query: 267 ALGLAVASKRISDVIIRSATEKTHEKFRKVNVRLKVELRILHRVLERLRNRGVDVSLEEK 326
           A   A  ++  ++ II +             + L+++++ L  +  RL  +GVDV   ++
Sbjct: 256 AYNFANLARAKAERIIATGIFAKPRVKMPPKLELQIQIKFLKLLTMRLEAQGVDVRGVKE 315

Query: 327 MLVQAERALKNGNVLLAKGLILQIHKELRKKIHKSR 362
           ++ +AE AL  GN+ LA   + +  +EL + IH+ R
Sbjct: 316 LIAKAEDALNQGNISLAIKYVNEA-RELLRYIHRGR 350


>sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2128478|pir||C64394
           hypothetical protein MJ0755 - Methanococcus jannaschii
           >gi|1499574|gb|AAB98748.1| (U67521)
           N-acetylmuramoyl-L-alanine amidase [Methanococcus
           jannaschii]
           Length = 342
           
 Score =  116 bits (288), Expect = 4e-25
 Identities = 97/338 (28%), Positives = 167/338 (48%), Gaps = 48/338 (14%)

Query: 2   RRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQV 61
           ++L+ +L+  +  +S  +IP++SA +         V+LVS+N AD   A ++A+ +NA V
Sbjct: 3   KKLMLLLLMAIPLVSAVAIPSISATD---------VVLVSDNCADQCTALEVADALNATV 53

Query: 62  VITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAET 121
           + T WG+YNES+++EIL+LNP+ V+IIGGP+AV   Y   L N   ITV R GG++R ET
Sbjct: 54  ITTEWGIYNESLIDEILALNPDKVIIIGGPLAVVENYTTALEN-VGITVERIGGSNRYET 112

Query: 122 CERALNVIREKFPQALG-NVTIVVVHGWDYPALMEAM---KEKGIVPLIVKNTSIDVR-- 175
                   + +F  A G N T+ V HG+D  AL E M   K    + L+    ++ V   
Sbjct: 113 NANVTLRFQNQFRYAFGNNTTVCVCHGFDDIALNETMGLIKNGTCLVLLTNGVNLSVEPQ 172

Query: 176 ----NFRKVMLLWSE-----NYRRFMERFRERLGNGTKL-------IEVNVTADMAERAI 219
                  KV ++ +      NY + M + ++   NG K+       ++V +   M +  I
Sbjct: 173 KLQLRINKVEIIENPICPFCNYSKLMLKLQK---NGLKIEIKQIPKVKVKL---MLQNRI 226

Query: 220 NIAQERLELAKKVVENSTLGNPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISD 279
            I + R+ + K++  N T         + E+KL+  ++  +  +Y  A  + V  +    
Sbjct: 227 RIMERRILMLKRMGVNVT---------DLEEKLKEVEQLMEQNRYQEAYRIMVQLQEEQM 277

Query: 280 VIIRSATEKTHEKFRKVNVR-LKVELRILHRVLERLRN 316
           V ++        K ++  ++  K    I H+ +  L N
Sbjct: 278 VRVKLHLHPMWSKMKRGKIQENKNASHIYHQNINNLTN 315


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.135    0.366 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116872107
Number of Sequences: 2977
Number of extensions: 4556630
Number of successful extensions: 22121
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22098
Number of HSP's gapped (non-prelim): 6
length of query: 366
length of database: 189,106,746
effective HSP length: 61
effective length of query: 305
effective length of database: 152,599,039
effective search space: 46542706895
effective search space used: 46542706895
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)