BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0337 (PAB0337) DE:Hypothetical protein
(361 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75167 hypothetical protein PAB0337 - Pyrococcus abyssi (st... 704 0.0
pir||A71048 hypothetical protein PH1673 - Pyrococcus horikoshii ... 467 e-131
pir||D75167 hypothetical protein PAB0336 - Pyrococcus abyssi (st... 197 2e-49
pir||B71048 hypothetical protein PH1674 - Pyrococcus horikoshii ... 193 3e-48
sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2... 90 3e-17
>pir||E75167 hypothetical protein PAB0337 - Pyrococcus abyssi (strain Orsay)
>gi|5457930|emb|CAB49420.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 704 bits (1796), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MRSLLSILLISILVLSALPAQAQVKNVIILVSDNEADLTLAEKIGELIQAKVVVTPWGIY 60
MRSLLSILLISILVLSALPAQAQVKNVIILVSDNEADLTLAEKIGELIQAKVVVTPWGIY
Sbjct: 1 MRSLLSILLISILVLSALPAQAQVKNVIILVSDNEADLTLAEKIGELIQAKVVVTPWGIY 60
Query: 61 NESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQSLGISYVRRWGETRVETAISVIKFLK 120
NESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQSLGISYVRRWGETRVETAISVIKFLK
Sbjct: 61 NESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQSLGISYVRRWGETRVETAISVIKFLK 120
Query: 121 KDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLSRNSSSVPINWSGRFIVVET 180
KDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLSRNSSSVPINWSGRFIVVET
Sbjct: 121 KDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLSRNSSSVPINWSGRFIVVET 180
Query: 181 PFSAGIFKKIRIPNPIIVKANVTKEITWDAIERAEKAIIRAKRIIELTDIPQEKRLEIAN 240
PFSAGIFKKIRIPNPIIVKANVTKEITWDAIERAEKAIIRAKRIIELTDIPQEKRLEIAN
Sbjct: 181 PFSAGIFKKIRIPNPIIVKANVTKEITWDAIERAEKAIIRAKRIIELTDIPQEKRLEIAN 240
Query: 241 RLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPRIRLPMKLQIQMQLRLLKM 300
RLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPRIRLPMKLQIQMQLRLLKM
Sbjct: 241 RLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPRIRLPMKLQIQMQLRLLKM 300
Query: 301 LTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEAKELIRQIHRGRVGWRGKGK 360
LTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEAKELIRQIHRGRVGWRGKGK
Sbjct: 301 LTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEAKELIRQIHRGRVGWRGKGK 360
Query: 361 P 361
P
Sbjct: 361 P 361
>pir||A71048 hypothetical protein PH1673 - Pyrococcus horikoshii
>gi|3258102|dbj|BAA30785.1| (AP000006) 365aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 365
Score = 467 bits (1190), Expect = e-131
Identities = 224/358 (62%), Positives = 294/358 (81%), Gaps = 2/358 (0%)
Query: 1 MRSLLSILLISILVLSALPAQAQVKNVIILVSDNEADLTLAEKIGELIQAKVVVTPWGIY 60
M+ L +LL I++ +A+P AQV+N +ILVSDNEADL LA+K+GEL+ A+VVVTPWG+Y
Sbjct: 1 MKKFLPLLLSFIILGTAVPTLAQVQNTLILVSDNEADLALAQKVGELLNAEVVVTPWGVY 60
Query: 61 NESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQSLGISYVRRWGETRVETAISVIKFLK 120
NES+S EI EKNPSLVLIIGGPKAVSPQYE D QS+GI YVRRWG TRVETA SVI F++
Sbjct: 61 NESISVEIIEKNPSLVLIIGGPKAVSPQYEVDLQSVGIPYVRRWGATRVETATSVINFIR 120
Query: 121 KDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLSRNSSSVPINWSGRFIVVET 180
KDYP LFK KL +VYGWDLAG+ K+RELM+ NVIP+Y+S NS++VP+NWSG+ IV+ET
Sbjct: 121 KDYPHLFKGVKLVVVYGWDLAGLSKLRELMRENNVIPVYISNNSTNVPVNWSGKLIVIET 180
Query: 181 PFSAGIFKKIRIPNPIIVKANVTKEITWDAIERAEKAIIRAKRIIELTDIPQEKRLEIAN 240
PFS I +++ + PIIVKANVT+E+ +AIE+AE+AI RA+ I L+ + LE A
Sbjct: 181 PFSKNIIRRLHLYGPIIVKANVTREVAEEAIEKAERAIKRAEVISRLSGL--SLGLESAY 238
Query: 241 RLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPRIRLPMKLQIQMQLRLLKM 300
+ L AKEAYS GDY++AYN AN AR+ A+ I++ G+F+KPR+++P KL++Q+Q++ LK+
Sbjct: 239 KFLGIAKEAYSQGDYLKAYNFANLARAKAERIIATGIFAKPRVKMPPKLELQIQIKFLKL 298
Query: 301 LTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEAKELIRQIHRGRVGWRGK 358
LTMRLE+QG+DV+ VKELIAKAEDAL +G+++ A+KY+NEA+EL+R IHRGR GW+GK
Sbjct: 299 LTMRLEAQGVDVRGVKELIAKAEDALNQGNISLAIKYVNEARELLRYIHRGREGWKGK 356
>pir||D75167 hypothetical protein PAB0336 - Pyrococcus abyssi (strain Orsay)
>gi|5457929|emb|CAB49419.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 197 bits (496), Expect = 2e-49
Identities = 128/370 (34%), Positives = 207/370 (55%), Gaps = 26/370 (7%)
Query: 1 MRSLLSILLISILVLS--ALPAQAQVK-------NVIILVSDNEADLTLAEKIGELIQAK 51
MR LL +L+ ++ LS ++PA + + NV+ILVS+NEADLTLAEKI ELI A+
Sbjct: 1 MRRLLGVLVAMLVALSIASIPAVSAQETQTTTNSNVVILVSNNEADLTLAEKIAELINAQ 60
Query: 52 VVVTPWGIYNESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQS-LGISYVRRWGETRVE 110
VV+TPWG+YNESV EI NP LVLIIGGP AV P YE+ ++ I+ +R G R E
Sbjct: 61 VVITPWGLYNESVLEEILSLNPELVLIIGGPIAVPPVYEDMLRNDFNITVIRAGGNDRAE 120
Query: 111 TAISVIKFLKKDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLS------RNS 164
T + +++ +P N + +V+GWD + E MK + ++P+ + RN
Sbjct: 121 TCERALNVIREKFPQALGNVTIVVVHGWDYPAL---MEAMKEKGIVPLIVKNTSIDVRNF 177
Query: 165 SSVPINWSGRFIVVETPFSAGIFKKIRIPNPIIVKANVTKEITWDAIERAEKAIIRAKRI 224
V + WS + F + + +++ NVT ++ AI A++ + AK++
Sbjct: 178 RKVMLLWSENYRRFMERFRERLGNGTK-----LIEVNVTADMAERAINIAQERLELAKKV 232
Query: 225 IELTDIPQ-EKRLEIANRLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPRI 283
+E + + E+ L A + L AKEAY G Y A LA A++ I+D I+
Sbjct: 233 VENSTLGNPERLLAEAEKKLELAKEAYKDGKYGAALGLAVASKRISDVIIRSATEKTHEK 292
Query: 284 RLPMKLQIQMQLRLLKMLTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYLNEA-K 342
+ ++++++LR+L + RL ++G+DV ++++ +AE ALK G++ A + + K
Sbjct: 293 FRKVNVRLKVELRILHRVLERLRNRGVDVSLEEKMLVQAERALKNGNVLLAKGLILQIHK 352
Query: 343 ELIRQIHRGR 352
EL ++IH+ R
Sbjct: 353 ELRKKIHKSR 362
>pir||B71048 hypothetical protein PH1674 - Pyrococcus horikoshii
>gi|3258103|dbj|BAA30786.1| (AP000006) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 193 bits (485), Expect = 3e-48
Identities = 120/371 (32%), Positives = 205/371 (54%), Gaps = 18/371 (4%)
Query: 1 MRSLLSILL-----ISILVLSALPAQAQ-VKNVIILVSDNEADLTLAEKIGELIQAKVVV 54
MR LL I + SI + A+ AQ Q ++IL SDNEAD+TLA+KI E++ A +V
Sbjct: 1 MRRLLGIFVALVVAFSIAAIPAVSAQDQGTSTIVILSSDNEADMTLAQKIAEILNATLVT 60
Query: 55 TPWGIYNESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQSLGISYVRRWGETRVETAIS 114
TPWG+YNE+V EI P LV+IIGGP AV P YEE + ++ +R G R ET
Sbjct: 61 TPWGVYNETVLDEIVNLTPDLVIIIGGPIAVPPIYEEALKDFNVTVLRAGGVDRAETCKK 120
Query: 115 VIKFLKKDYPWLFKNAKLALVYGWDLAGIHKVRELMKRENVIPIYLSRNSSSVPINWSGR 174
+ +++ +P F+N + +VYGWD + E +K ++P+ + +N++ + +
Sbjct: 121 AFEIIRERFPRAFENVTVVVVYGWDYPAL---MEALKERGIVPLII-KNTTIEDLRKFRK 176
Query: 175 FIVVETPFSAGIFKKIRIP---NPIIVKANVTKEITWDAIERAEKAIIRAKRIIELTDIP 231
++ + ++ + ++++ N V NVT EI AI+ AE + AK + + + P
Sbjct: 177 IKIIRSRYAERVMRELKKKLGNNTKEVTVNVTAEIAKRAIKLAEDRLKVAKEVAKNSSKP 236
Query: 232 QEKRLEI-ANRLLSKAKEAYSTGDYIRAYNLANAARSIADSIVSMGMFSKPRIRLPMKLQ 290
L + A R L AK+AY G Y RA+ LA AAR+I+++I+ + + ++
Sbjct: 237 NVDVLLVNAERDLELAKKAYEEGKYGRAFGLATAARNISEAIIKSATENSQKKLNIGVIR 296
Query: 291 IQMQLRLLKMLTMRLESQGIDVKPVKELIAKAEDALKRGDLNEAMKYL----NEAKELIR 346
+++++R+L+ + +L+ +G+DV + L+ +A+ AL +GD A + E IR
Sbjct: 297 LKIEIRVLERVLNKLKERGVDVSIEEGLLLQAKSALSKGDFRLAKTLIVLIHRELWRDIR 356
Query: 347 QIHRGRVGWRG 357
++H+ + RG
Sbjct: 357 ELHKAKHKTRG 367
>sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2128478|pir||C64394
hypothetical protein MJ0755 - Methanococcus jannaschii
>gi|1499574|gb|AAB98748.1| (U67521)
N-acetylmuramoyl-L-alanine amidase [Methanococcus
jannaschii]
Length = 342
Score = 90.5 bits (221), Expect = 3e-17
Identities = 76/270 (28%), Positives = 137/270 (50%), Gaps = 27/270 (10%)
Query: 2 RSLLSILLISILVLSALPAQAQVKNVIILVSDNEADLTLAEKIGELIQAKVVVTPWGIYN 61
+ L+ +LL++I ++SA+ + ++LVSDN AD A ++ + + A V+ T WGIYN
Sbjct: 3 KKLMLLLLMAIPLVSAVAIPSISATDVVLVSDNCADQCTALEVADALNATVITTEWGIYN 62
Query: 62 ESVSAEIAEKNPSLVLIIGGPKAVSPQYEEDFQSLGISYVRRWGETRVETAISVIKFLKK 121
ES+ EI NP V+IIGGP AV Y +++GI+ R G R ET +V +
Sbjct: 63 ESLIDEILALNPDKVIIIGGPLAVVENYTTALENVGITVERIGGSNRYETNANVTLRFQN 122
Query: 122 DYPWLF-KNAKLALVYGWDLAGIHKVRELMKR-------ENVIPIYLSRNSSSVPINWSG 173
+ + F N + + +G+D +++ L+K N + + + + IN
Sbjct: 123 QFRYAFGNNTTVCVCHGFDDIALNETMGLIKNGTCLVLLTNGVNLSVEPQKLQLRIN--- 179
Query: 174 RFIVVETP------FSAGIFK----KIRIPNPIIVKANVTKEITWDAIERAEKAIIRAKR 223
+ ++E P +S + K ++I I K V K + + I E+ I+ KR
Sbjct: 180 KVEIIENPICPFCNYSKLMLKLQKNGLKIEIKQIPKVKV-KLMLQNRIRIMERRILMLKR 238
Query: 224 I-IELTDIPQEKRLEIANRLL--SKAKEAY 250
+ + +TD+ E++L+ +L+ ++ +EAY
Sbjct: 239 MGVNVTDL--EEKLKEVEQLMEQNRYQEAY 266
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.136 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116267445
Number of Sequences: 2977
Number of extensions: 4557822
Number of successful extensions: 13317
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13305
Number of HSP's gapped (non-prelim): 5
length of query: 361
length of database: 189,106,746
effective HSP length: 59
effective length of query: 302
effective length of database: 153,796,013
effective search space: 46446395926
effective search space used: 46446395926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)