BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0339 (PAB0339) DE:Hypothetical protein
(225 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75167 hypothetical protein PAB0339 - Pyrococcus abyssi (st... 461 e-129
pir||G71047 hypothetical protein PH1671 - Pyrococcus horikoshii ... 432 e-120
gi|11498864 conserved hypothetical protein [Archaeoglobus fulgid... 230 1e-59
pir||H72287 conserved hypothetical protein - Thermotoga maritima... 208 6e-53
pir||F72712 hypothetical protein APE1117 - Aeropyrum pernix (str... 195 3e-49
emb|CAC11897.1| (AL445065) conserved hypothetical protein [Therm... 189 2e-47
pir||A69121 conserved hypothetical protein MTH1902 - Methanobact... 167 9e-41
gb|AAK40455.1| Conserved hypothetical protein [Sulfolobus solfat... 167 9e-41
pir||S75390 hypothetical protein c04023 - Sulfolobus solfataricu... 167 9e-41
pir||B64445 hypothetical protein MJ1163 - Methanococcus jannasch... 166 2e-40
pir||A75572 conserved hypothetical protein - Deinococcus radiodu... 161 5e-39
dbj|BAB06897.1| (AP001518) unknown conserved protein [Bacillus h... 159 3e-38
gi|11499736 conserved hypothetical protein [Archaeoglobus fulgid... 128 5e-29
gb|AAG19448.1| (AE005038) Vng1038c [Halobacterium sp. NRC-1] 122 5e-27
pir||T43935 conserved hypothetical protein [imported] - Pyrococc... 112 3e-24
pir||F71232 hypothetical protein PH0120 - Pyrococcus horikoshii ... 91 1e-17
gb|AAK42553.1| Conserved hypothetical protein [Sulfolobus solfat... 90 2e-17
pir||D75199 hypothetical protein PAB2269 - Pyrococcus abyssi (st... 90 3e-17
pir||T35217 hypothetical protein SC5C7.10c SC5C7.10c - Streptomy... 77 2e-13
pir||A72406 conserved hypothetical protein - Thermotoga maritima... 75 1e-12
pir||G69994 conserved hypothetical protein ytkL - Bacillus subti... 72 7e-12
pir||E72773 hypothetical protein APE0176 - Aeropyrum pernix (str... 72 7e-12
>pir||G75167 hypothetical protein PAB0339 - Pyrococcus abyssi (strain Orsay)
>gi|5457932|emb|CAB49422.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 225
Score = 461 bits (1173), Expect = e-129
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MVKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
MVKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE
Sbjct: 1 MVKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG 120
IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG
Sbjct: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG 120
Query: 121 NASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVEL 180
NASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVEL
Sbjct: 121 NASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVEL 180
Query: 181 LKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVVLKPGEELEL 225
LKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVVLKPGEELEL
Sbjct: 181 LKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVVLKPGEELEL 225
>pir||G71047 hypothetical protein PH1671 - Pyrococcus horikoshii
>gi|3258100|dbj|BAA30783.1| (AP000006) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 432 bits (1098), Expect = e-120
Identities = 204/225 (90%), Positives = 219/225 (96%)
Query: 1 MVKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
MVKVKFLGHAAFYIEGSKKILIDPFLTGNPQA A+PEDFKDVDLILVTHAHGDH+GDAGE
Sbjct: 12 MVKVKFLGHAAFYIEGSKKILIDPFLTGNPQAAARPEDFKDVDLILVTHAHGDHLGDAGE 71
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG 120
IA+ISGAKIVAMYD+ANYI+EK+K VET+GMNYGPTE+DGVFIVQVPAWHSSSDGKYSIG
Sbjct: 72 IARISGAKIVAMYDLANYISEKYKDVETIGMNYGPTEIDGVFIVQVPAWHSSSDGKYSIG 131
Query: 121 NASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVEL 180
N SG+IVKLD TIYHAGDTYVFKDMELF+ELYGPIDVALLPIGGHFTMGV+EAAKAVEL
Sbjct: 132 NPSGYIVKLDDVTIYHAGDTYVFKDMELFAELYGPIDVALLPIGGHFTMGVREAAKAVEL 191
Query: 181 LKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVVLKPGEELEL 225
LKPR VVPMHYNTWPPISADPEEFK+LVGDKA+VV+LKPGEEL+L
Sbjct: 192 LKPRKVVPMHYNTWPPISADPEEFKRLVGDKAEVVILKPGEELKL 236
>gi|11498864 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7449929|pir||H69407 conserved hypothetical protein
AF1265 - Archaeoglobus fulgidus
>gi|2649315|gb|AAB89979.1| (AE001017) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 231
Score = 230 bits (580), Expect = 1e-59
Identities = 120/232 (51%), Positives = 158/232 (67%), Gaps = 13/232 (5%)
Query: 2 VKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGEI 61
+K+ +LGHAAF +EGS K+LIDPFLTGNP A KPE+ K D ILVTH HGDH+GDA EI
Sbjct: 1 MKITWLGHAAFLLEGSMKVLIDPFLTGNPNAPVKPEEVK-ADYILVTHGHGDHLGDAVEI 59
Query: 62 AKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDG-VFIVQVPAWHSSS-----DG 115
AK + A I+ +++++ ++ VET+GMN G T G + + VPAWHS+
Sbjct: 60 AKRNNAPIICIHELSRILSRY--DVETMGMNMGGTARTGSIAVTMVPAWHSADLEDEQGN 117
Query: 116 KYSIGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAA 175
S G +GFIV +DG +YH GDT VF DM+L EL+ P DV LLPIG ++TMG+ A
Sbjct: 118 IISAGLPAGFIVSMDGVRVYHTGDTDVFLDMQLIGELHRP-DVMLLPIGDYYTMGIAGAV 176
Query: 176 KAVELLKPRTVVPMHYNTWPPISADPEEFKKLV---GDKAKVVVLKPGEELE 224
KA+EL+KP+ +PMHYNT+P + DPE+F+K V G +VV+LKPGE E
Sbjct: 177 KALELVKPKVAIPMHYNTFPLVEKDPEDFRKAVKAKGLDVEVVILKPGESYE 228
>pir||H72287 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981711|gb|AAD36238.1|AE001773_7 (AE001773)
conserved hypothetical protein [Thermotoga maritima]
Length = 226
Score = 208 bits (523), Expect = 6e-53
Identities = 114/230 (49%), Positives = 153/230 (65%), Gaps = 10/230 (4%)
Query: 2 VKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGEI 61
+KV FLGHA IEG K I+IDPF++GNP K E +D ILVTH HGDH+GDA EI
Sbjct: 1 MKVTFLGHAVVLIEGKKNIIIDPFISGNPVCPVKLEGLPKIDYILVTHGHGDHLGDAVEI 60
Query: 62 AKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEV-DGVFIVQVPAWHSSS--DGKYS 118
AK + A +++ Y+I +Y+ + KGV+T M+ G + + D + PA H S DG
Sbjct: 61 AKKNDATVISNYEICHYLGK--KGVKTHAMHIGGSYLFDFGRVKMTPAVHGSGILDGDSM 118
Query: 119 I--GNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAK 176
I GN SGF++ ++GK IYHAGDT + ++MEL +E +DVA LPIGG+F M V++A +
Sbjct: 119 IYGGNPSGFLITIEGKKIYHAGDTGLTREMELLAE--ENVDVAFLPIGGNFVMDVEDAVR 176
Query: 177 AVELLKPRTVVPMHYNTWPPISADPEEFKKLVGDK-AKVVVLKPGEELEL 225
A ++KP+ VVPMHY TW I AD E FKK V +K + V+L+PGE LEL
Sbjct: 177 AAVMIKPKKVVPMHYGTWELIFADVELFKKKVEEKGVECVILEPGESLEL 226
>pir||F72712 hypothetical protein APE1117 - Aeropyrum pernix (strain K1)
>gi|5104787|dbj|BAA80102.1| (AP000060) 242aa long
hypothetical protein [Aeropyrum pernix]
Length = 242
Score = 195 bits (491), Expect = 3e-49
Identities = 113/244 (46%), Positives = 154/244 (62%), Gaps = 28/244 (11%)
Query: 1 MVKVKFLGHAAFYIE-GSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAG 59
M ++ +LGHAAF +E G +KIL+DP+L+ NP++ KPE+ + VDLI++TH+H DH+GD G
Sbjct: 1 MARLTYLGHAAFQLEAGGRKILVDPWLS-NPKSPVKPEEVEGVDLIVITHSHFDHLGDVG 59
Query: 60 EIA-KISGAKIVAMYDIANYIAEK------------FKGVETVGMNYGPTEVD---GVFI 103
+IA K GAK++A+Y++A+ AE+ F +G N G V G+ +
Sbjct: 60 KIAAKNPGAKVLAVYEVADLAAEEIAKETGASKDELFNAGRVIGANIGGPVVLQDLGLKV 119
Query: 104 VQVPAWHSSSDGKYSIGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPI 163
PA HSS +G A+G ++ +YHAGDT V DM L E+Y P VALLPI
Sbjct: 120 AFTPATHSS------VGVAAGAVIITGEGRVYHAGDTGVTMDMRLVGEIYKP-HVALLPI 172
Query: 164 GGHFTMGVKEAAKAVELLKPRTVVPMHYNTWPPISADPEEFKKLVGDK---AKVVVLKPG 220
GGHFTM EAAKAVEL++P +PMHY T+P + DPEEFKK V +K +V +LKPG
Sbjct: 173 GGHFTMDPVEAAKAVELIRPLVAIPMHYGTFPVLYGDPEEFKKRVEEKCLPTQVRILKPG 232
Query: 221 EELE 224
E E
Sbjct: 233 ESYE 236
>emb|CAC11897.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 259
Score = 189 bits (476), Expect = 2e-47
Identities = 104/218 (47%), Positives = 143/218 (64%), Gaps = 8/218 (3%)
Query: 2 VKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGEI 61
+K+ + GHA F + G K +L+DPFLT NP A KPE+ K DLILVTH H DH DA +I
Sbjct: 39 LKIIWHGHACFSLIGKKHVLVDPFLTDNPVAKVKPEELKP-DLILVTHGHSDHCEDASKI 97
Query: 62 AKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPT-EVDGVFIVQVPAWHSSS-DGKYSI 119
+K + A +VA ++++ + E+ G ET+ +N G T E +G+ + A HSSS +G+Y+
Sbjct: 98 SKNTHAPVVAAFELSEILKEE--GTETIDINPGGTIEYEGIRVKATIATHSSSYNGRYA- 154
Query: 120 GNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVE 179
GN GF++ + G+ IYHAGDT FKDME + P D+ALLPIGGH+TM V A +AV+
Sbjct: 155 GNPMGFVIDM-GRKIYHAGDTGYFKDMEAIGAMDRP-DIALLPIGGHYTMDVDGAFEAVK 212
Query: 180 LLKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVVL 217
+KP +PMHYNT+ I ADPE FK L G V++
Sbjct: 213 AIKPAIAIPMHYNTFDLIRADPERFKALAGTVGTYVII 250
>pir||A69121 conserved hypothetical protein MTH1902 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2623035|gb|AAB86362.1| (AE000941) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 230
Score = 167 bits (419), Expect = 9e-41
Identities = 97/229 (42%), Positives = 147/229 (63%), Gaps = 14/229 (6%)
Query: 2 VKVKFLGHAAFYIEGSK-KILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+++++ GH+AF I S +IL+DPF++ NP E+F+ D+I VTH H DH+GDA E
Sbjct: 1 MRIQWFGHSAFEITSSDTRILLDPFISNNPVCSTAVEEFEP-DVICVTHGHADHLGDAME 59
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYG-PTEVDGVFIVQVPAWHSS----SDG 115
IA+ +GA ++A ++++ + + + G+E+ GMN G +DG+ I V A HSS ++
Sbjct: 60 IAERTGALLIANHELSVFFSRQ--GLESTGMNIGGKISIDGIGIRMVDAKHSSDIDFTEE 117
Query: 116 KYSIGNASGFIVKLDGKTIYHAGDTYVFKDM-ELFSELYGPIDVALLPIGGHFTMGVKEA 174
S G+A GFI++ +YHAGDT +F DM ++ E+Y P D+ALLPIG +TMG ++A
Sbjct: 118 VTSGGSACGFIIETREGKVYHAGDTGLFADMRDVIGEIYRP-DIALLPIGDRYTMGPEDA 176
Query: 175 AKAVELLKPRTVVPMHYNTWPPISADPEEFKKLV---GDKAKVVVLKPG 220
A A +KP V+PMHYNT+P I +PE F +LV +VV+L G
Sbjct: 177 AVAAGWIKPEKVLPMHYNTFPVIEQNPEIFAELVERTSPGTEVVILDVG 225
>gb|AAK40455.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 227
Score = 167 bits (419), Expect = 9e-41
Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 14/233 (6%)
Query: 1 MVKVKFLGHAAFYIE-GSKKILIDPFLTGNPQAVAKPEDFKD-VDLILVTHAHGDHIGDA 58
M ++++LGHAA + G+K ++IDP + NP + K + FK+ +D+I+VTH H DH+GD
Sbjct: 1 MAQLRWLGHAATLLTFGNKNVIIDPMIKDNPLSPVKLDYFKNNLDIIIVTHDHYDHLGDT 60
Query: 59 GEIAKISG-AKIVAMYDIANYIAEKFKGVET--VGMNYGP-TEVDGVFIVQVPAWHSSSD 114
E+ +++ AK+ A YD+ ++AE +K E + N G EVDG+ + A HSS+
Sbjct: 61 VELLRMNPKAKLFATYDLEAHLAETYKISEESIIPANVGGFVEVDGIKLALTKAVHSSTH 120
Query: 115 GKYSIGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEA 174
+ +G IV +G T+YHAGDT +F+DM+L E++ P D ALLPIGG FTM +A
Sbjct: 121 S-----DPTGAIVSAEGITVYHAGDTGLFEDMKLIGEVFKP-DYALLPIGGRFTMDPYQA 174
Query: 175 AKAVELLKPRT-VVPMHYNTWPPISADPEEFKKLVGDKA-KVVVLKPGEELEL 225
+ +VEL+KP+ +P+HYNTW I D +F KLV +K +VL+PG+ + L
Sbjct: 175 SISVELIKPKKGAIPIHYNTWDLIKVDVNDFVKLVKNKGYNPIVLQPGQTITL 227
>pir||S75390 hypothetical protein c04023 - Sulfolobus solfataricus
>gi|1707795|emb|CAA69552.1| (Y08257) orf c04023
[Sulfolobus solfataricus]
Length = 227
Score = 167 bits (419), Expect = 9e-41
Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 14/233 (6%)
Query: 1 MVKVKFLGHAAFYIE-GSKKILIDPFLTGNPQAVAKPEDFKD-VDLILVTHAHGDHIGDA 58
M ++++LGHAA + G+K ++IDP + NP + K + FK+ +D+I+VTH H DH+GD
Sbjct: 1 MAQLRWLGHAATLLTFGNKNVIIDPMIKDNPLSPVKLDYFKNNLDIIIVTHDHYDHLGDT 60
Query: 59 GEIAKISG-AKIVAMYDIANYIAEKFKGVET--VGMNYGP-TEVDGVFIVQVPAWHSSSD 114
E+ +++ AK+ A YD+ ++AE +K E + N G EVDG+ + A HSS+
Sbjct: 61 VELLRMNPKAKLFATYDLEAHLAETYKISEESIIPANVGGFVEVDGIKLALTKAVHSSTH 120
Query: 115 GKYSIGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEA 174
+ +G IV +G T+YHAGDT +F+DM+L E++ P D ALLPIGG FTM +A
Sbjct: 121 S-----DPTGAIVSAEGITVYHAGDTGLFEDMKLIGEVFKP-DYALLPIGGRFTMDPYQA 174
Query: 175 AKAVELLKPRT-VVPMHYNTWPPISADPEEFKKLVGDKA-KVVVLKPGEELEL 225
+ +VEL+KP+ +P+HYNTW I D +F KLV +K +VL+PG+ + L
Sbjct: 175 SISVELIKPKKGAIPIHYNTWDLIKVDVNDFVKLVKNKGYNPIVLQPGQTITL 227
>pir||B64445 hypothetical protein MJ1163 - Methanococcus jannaschii
>gi|1591789|gb|AAB99165.1| (U67558) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 217
Score = 166 bits (416), Expect = 2e-40
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 12/225 (5%)
Query: 4 VKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGEIAK 63
+ + GHA F ++ +LIDPF+ + E + V++I VTH H DH+G+A E+AK
Sbjct: 2 ITWYGHACFKVDN---VLIDPFVPNPLCDLPYDEIMEGVEVIAVTHGHADHLGNAEELAK 58
Query: 64 ISGAKIVAMYDIANYIAEKFKGVETVGMNYGPT-EVDGVFIVQVPAWHSSS-DGKYSIGN 121
+V ++I+ Y++E+ GV GMN G T E++G + V A HSS S G
Sbjct: 59 TYNVPVVTNHEISVYLSER--GVCAEGMNIGGTIEINGAKLTMVKAEHSSDISPTISGGV 116
Query: 122 ASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVELL 181
A+GFI+ +YHAGDT +F DMEL E+Y P +ALLPIGG +TMG+ EA A+EL+
Sbjct: 117 AAGFIIN---DRVYHAGDTGLFGDMELIGEIYAP-QIALLPIGGRYTMGIDEALVAIELI 172
Query: 182 KPRTVVPMHYNTWPPISADPEEF-KKLVGDKAKVVVLKPGEELEL 225
P V+PMHYNT+P I D EF KK +V+V K GE LEL
Sbjct: 173 YPEIVIPMHYNTFPLIEVDVNEFVKKAEALGVEVIVPKIGEPLEL 217
>pir||A75572 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457664|gb|AAF09599.1|AE001864_5 (AE001864)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 260
Score = 161 bits (404), Expect = 5e-39
Identities = 93/233 (39%), Positives = 142/233 (60%), Gaps = 14/233 (6%)
Query: 1 MVKVKFLGHAAFYIE-GSKKILIDPFLTGNPQAVAKPEDFKD--VDLILVTHAHGDHIGD 57
M+K++ LGH+ F+++ G+ ++LI+PFL GNP+ + + +L++HAHGDH G+
Sbjct: 34 MLKIRSLGHSTFFLDDGTHRLLIEPFLEGNPRCPVTLGEVQSWQPSAVLISHAHGDHWGN 93
Query: 58 AGEIAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPT-EVDGVFIVQVPAWHSSS--D 114
A + + +G I+A +IA Y A VGMN G T + + PAWHSSS D
Sbjct: 94 ALDFGR-AGVPIIATAEIAGY-AGAHGANNAVGMNIGGTYRAEWGSVSLTPAWHSSSFPD 151
Query: 115 GKYSIGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEA 174
G Y G +G +++ G+ +Y AGDT +F DM L + +D+A LPIG H+TMG +EA
Sbjct: 152 GTYG-GMPTGLVIEFGGQRLYFAGDTALFSDMRLIGDR--ELDLAFLPIGDHYTMGPEEA 208
Query: 175 AKAVELLKPRTVVPMHYNTWPPISADPEEFKKLVGDK--AKVVVLKPGEELEL 225
+ ++LL+PR +PMHY T+P ++ DP F + G++ +V VL PGE EL
Sbjct: 209 GRTLDLLRPRVAIPMHYATFPALTGDPAVF-RTEGERRGVEVRVLDPGETTEL 260
>dbj|BAB06897.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 226
Score = 159 bits (398), Expect = 3e-38
Identities = 100/234 (42%), Positives = 143/234 (60%), Gaps = 18/234 (7%)
Query: 2 VKVKFLGHAAFYIEGS-KKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+KV + GH+ IE K I+IDPF+TGN +D K VD+IL+TH H DH+GD +
Sbjct: 1 MKVSYHGHSVVKIETEGKTIVIDPFITGNGLTDLSVDDLK-VDVILLTHGHNDHVGDTLQ 59
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPT---EVDGVFIVQVPAWHSSSDGKY 117
+AK + A ++A +++A Y++ +KGV+ M+ G E V + Q A+H SS +
Sbjct: 60 LAKQNDALVIAPFELATYLS--WKGVKVHEMHIGGAHQFEFGHVKLTQ--AFHGSSYTEE 115
Query: 118 S-----IGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVK 172
+ G SG + +GKTI+HAGDT +F DM+L E IDVA LPIG +FTMG +
Sbjct: 116 NQTIVYTGMPSGILFTAEGKTIFHAGDTALFSDMKLIGER-NTIDVAFLPIGDNFTMGPE 174
Query: 173 EAAKAVELLKPRTVVPMHYNTWPPISADPEEF-KKLVGDKAKVVVLKPGEELEL 225
+AA A E L+ +TVVP+HYNT+P I DP F + L G K + + + GE +EL
Sbjct: 175 DAAVAAEWLQAKTVVPIHYNTFPVIEQDPVAFAESLSGKKGRALAV--GEAIEL 226
>gi|11499736 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7449933|pir||A69519 conserved hypothetical protein
AF2153 - Archaeoglobus fulgidus
>gi|2648361|gb|AAB89087.1| (AE000955) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 208
Score = 128 bits (319), Expect = 5e-29
Identities = 85/218 (38%), Positives = 124/218 (55%), Gaps = 22/218 (10%)
Query: 2 VKVKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGEI 61
V++ +L HA F I+GS+ + IDP+ PE+ + D+ILVTH H DH+ D I
Sbjct: 11 VEITWLKHAGFRIKGSRVVYIDPYDI--------PEELEKADVILVTHDHFDHM-DVKSI 61
Query: 62 AKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIGN 121
K+S V ++ + I E F+ E VG+ EV GV I VPA++ D + N
Sbjct: 62 RKLSKDDTVVVHP-SGCIIEGFESCE-VGVGT-EAEVKGVKIKAVPAYNV--DKPFHKEN 116
Query: 122 ASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVELL 181
G+IV +DG IYHAGDT +M+ +D+ALLP+GG +TM ++EA +A + +
Sbjct: 117 CVGYIVGIDGVKIYHAGDTDRIPEMKEIE-----VDIALLPVGGTYTMNLQEAIEAAKDI 171
Query: 182 KPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVVLKP 219
+ + +PMH+ P SADPEEFK+ V V+LKP
Sbjct: 172 RAKYYIPMHFGAIPQTSADPEEFKRKV---KGAVILKP 206
>gb|AAG19448.1| (AE005038) Vng1038c [Halobacterium sp. NRC-1]
Length = 240
Score = 122 bits (302), Expect = 5e-27
Identities = 81/241 (33%), Positives = 124/241 (50%), Gaps = 22/241 (9%)
Query: 2 VKVKFLGHAAFYIE-GSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+++ + GH+ + + G+ +L+DPF NP P + VD +L+TH H DHI G
Sbjct: 1 MELTWFGHSTWRVTVGTTDLLVDPFFD-NPHTDTAPSEVA-VDHVLLTHGHADHIAHVGA 58
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPT-EVDGVFIVQVPAWHSS---SDGK 116
A V ++ Y+A++ +T GMN G T E+ F+ V A H++ + +
Sbjct: 59 FAD---THTVGTPEVTGYVADETGVEDTTGMNLGGTVELGDAFVTMVRADHTNGLETGYE 115
Query: 117 YSIGNASGFIVKL---------DGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHF 167
YS G G+++ D T YHAGDT + +M+ Y D A +P+G HF
Sbjct: 116 YSGGTPVGYVISDAAPTQTGDGDATTFYHAGDTSLQSEMKDVIGPYLDPDAAAVPVGDHF 175
Query: 168 TMGVKEAAKAVELLKPRTVVPMHYNTWPPISADPEEFKKLV---GDKAKVVVLKPGEELE 224
TMG +AA AV+ L PMHY+T+PPI D +F++ V G +A V VL E ++
Sbjct: 176 TMGPMQAAVAVDWLDVDVAFPMHYDTFPPIEVDTADFEREVNATGSQADVHVLDGDETVD 235
Query: 225 L 225
L
Sbjct: 236 L 236
>pir||T43935 conserved hypothetical protein [imported] - Pyrococcus furiosus
>gi|2967438|dbj|BAA25165.1| (D84670) ORF4 [Pyrococcus
furiosus]
Length = 210
Score = 112 bits (278), Expect = 3e-24
Identities = 84/230 (36%), Positives = 124/230 (53%), Gaps = 26/230 (11%)
Query: 2 VKVKFLGHAAFYIEG-SKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+K+ + GHA F +E KILIDP+ + + K VD ILVTH H DH G
Sbjct: 1 MKIVWCGHACFLVEDRGTKILIDPYPDVDEDRIGK------VDYILVTHEHMDHYGKTPL 54
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSD-GKYSI 119
IAK+S A+++ + Y+ G+ V E++ + ++V A+ + +Y +
Sbjct: 55 IAKLSDAEVIGPKTV--YLMAISDGLTKVREIEVGQEIE-LGDIRVRAFFTEHPTSQYPL 111
Query: 120 GNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVE 179
G ++++ K + H GDTY F+EL G +DV L+PIGG T V+EAA VE
Sbjct: 112 G----YLIE-GSKRVAHLGDTYY---SPAFTELRGKVDVLLVPIGGKSTASVREAADIVE 163
Query: 180 LLKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVV----LKPGEELEL 225
+++PR VPMHY T+ ADPEEFKK + K ++ V LKP E E+
Sbjct: 164 MIRPRIAVPMHYGTYS--EADPEEFKKEL-QKRRIWVLVKDLKPYEGFEI 210
>pir||F71232 hypothetical protein PH0120 - Pyrococcus horikoshii
>gi|3256506|dbj|BAA29189.1| (AP000001) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 90.9 bits (222), Expect = 1e-17
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 2 VKVKFLGHAAFYIEGSK-KILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+K+ + GHA F ++ ILIDP+ + + K VD IL+TH H DH G
Sbjct: 1 MKIVWYGHACFLVKTKGVSILIDPYPDVDEDRMEK------VDYILITHEHMDHYGKTPL 54
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG 120
IAK++ A+++ + Y+ G+ V E + + +Y +G
Sbjct: 55 IAKLNDAEVIGPKTV--YLMAISDGLTKVREVEADQEFQLGDVTVKTFYTEHPTSQYPLG 112
Query: 121 NASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVEL 180
+ L K + H GDTY F EL G +D+ L+PIGG T +EA +++
Sbjct: 113 -----YLILGEKRVAHLGDTYYSPG---FRELRGQVDILLVPIGGRSTASEREAVDIIDI 164
Query: 181 LKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVV---LKPGEELEL 225
++PR VVPMHY T+ + + E FK+ + + V+ LKP E E+
Sbjct: 165 IRPRIVVPMHYGTYGS-TGNVESFKRELQRRRVWVLVKDLKPYEGFEV 211
>gb|AAK42553.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 211
Score = 90.1 bits (220), Expect = 2e-17
Identities = 68/204 (33%), Positives = 98/204 (47%), Gaps = 32/204 (15%)
Query: 4 VKFLGHAAFYIEGSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGEIAK 63
+K+ GH+ I+ +ILIDP G + KP D K VDLILVTH H DH +A +I +
Sbjct: 3 LKYFGHSCVLIDD--RILIDPH-DGGSIGLPKP-DIKKVDLILVTHDHYDH--NAYQIFE 56
Query: 64 ISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIGNAS 123
KI N+ YG I + ++H +GK N+
Sbjct: 57 YKDVKI-------NF--------------YGSLTYSNYTIKGIKSYHDKYNGKLRGENSI 95
Query: 124 GFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVELLKP 183
+ + DGK I H GD + + ELYG DV L+PIGG T+ KEA + + + P
Sbjct: 96 YVLQRSDGKKIVHLGDLGHLLEENTYKELYGA-DVLLIPIGGVITINFKEALEIINKISP 154
Query: 184 RTVVPMHY---NTWPPISADPEEF 204
+ ++P+HY + P+ PEEF
Sbjct: 155 KIIIPIHYWIKGHYMPLD-PPEEF 177
>pir||D75199 hypothetical protein PAB2269 - Pyrococcus abyssi (strain Orsay)
>gi|5457552|emb|CAB49043.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 210
Score = 89.7 bits (219), Expect = 3e-17
Identities = 70/228 (30%), Positives = 108/228 (46%), Gaps = 22/228 (9%)
Query: 2 VKVKFLGHAAFYIEGSK-KILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+K+ + GHA F I+ ILIDP+ + + K VD IL+TH H DH G
Sbjct: 1 MKIVWYGHACFLIKTKGVSILIDPYPDVDEDRMEK------VDYILITHEHMDHYGKTPL 54
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG 120
IAK++ A+++ + Y+ G+ V E+ + + +Y +G
Sbjct: 55 IAKLNDAEVIGPKTV--YLMAISDGLTKVREIEAGQEIQLGDVTVKAFYTEHPTSQYPLG 112
Query: 121 NASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVEL 180
+ + K + H GDTY F L G +D+ L+PIGG T +EA V++
Sbjct: 113 -----YLIIGDKRVAHLGDTYYSPS---FKNLRGQVDILLVPIGGRSTASEREAVDIVDI 164
Query: 181 LKPRTVVPMHYNTWPPISADPEEFKKLVGDKAKVVV---LKPGEELEL 225
++PR VPMHY T+ SA E FK+ + + V+ LKP E E+
Sbjct: 165 IRPRIAVPMHYGTYGGGSA--EGFKRELQRRRVWVLVKDLKPYEGFEV 210
>pir||T35217 hypothetical protein SC5C7.10c SC5C7.10c - Streptomyces coelicolor
>gi|3560000|emb|CAA20622.1| (AL031515) hypothetical
protein SC5C7.10c [Streptomyces coelicolor A3(2)]
Length = 255
Score = 76.9 bits (186), Expect = 2e-13
Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 35/229 (15%)
Query: 2 VKVKFLGHAAFYIEGSK-KILIDPF-------LTGNPQAVAKPEDFKDVDLILVTHAHGD 53
+++ + GHA +E S ++L DP L AV PE ++ D+ LV+H H D
Sbjct: 1 MELTWWGHATCTVEDSGIRVLTDPLFVRRLAHLRRRRGAVPPPEAWR-ADVALVSHLHAD 59
Query: 54 HIGDAGEIAKISGAKIVAMYDIANYIA--EKFKGVETVGMNYGP-TEVDGVFIVQVPAWH 110
H+ G +++ + + +E + G T V + I VPA H
Sbjct: 60 HLHVPSLARLAPGTRLLVPRGARRAVPGLRRLGHLELTEVVPGDETTVGDLRIRAVPARH 119
Query: 111 SSSDGKYSIGN----ASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVALLPIGG- 165
+ +G A G++V+ + +T Y AGDT +F ME + GP+D ALLP+GG
Sbjct: 120 DGR--RLPVGRHRAPALGYVVEGEART-YFAGDTGLFDGME---QEVGPVDAALLPVGGW 173
Query: 166 -------HFTMGVKEAAKAVELLKPRTVVPMHYNTWPPISAD---PEEF 204
H G AA+A+ L PRT VP+HY T+ PI D P EF
Sbjct: 174 GPYLGAEHLDAG--RAAEALARLAPRTAVPVHYGTYWPIGMDAVRPHEF 220
>pir||A72406 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980704|gb|AAD35299.1|AE001705_10 (AE001705)
conserved hypothetical protein [Thermotoga maritima]
Length = 208
Score = 74.5 bits (180), Expect = 1e-12
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 32/194 (16%)
Query: 2 VKVKFLGHAAFYIE-GSKKILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+K+ + GHA F +E K I+ DPF ++V P D++ +H H DH
Sbjct: 1 MKITWFGHACFALEMEGKTIVTDPF----DESVGYPIPNVTADVVTESHQHFDH------ 50
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDGVFIVQVPAWHSSSDGKYSIG 120
+ + + F+ ++ G V+GV I V +H S G+ G
Sbjct: 51 -------------NAHHLVKGNFRVIDRPGAY----TVNGVKIKGVETFHDPSHGRER-G 92
Query: 121 NASGFIVKLDGKTIYHAGDT-YVFKDMELFSELYGPIDVALLPIGGHFTMGVKEAAKAVE 179
F+ + +G + H GD +V ++ E G IDV L+P+GG +T+G KEA + +
Sbjct: 93 KNIVFVFEGEGIKVCHLGDLGHVLTPAQV--EEIGEIDVLLVPVGGTYTIGPKEAKEVAD 150
Query: 180 LLKPRTVVPMHYNT 193
LL + ++PMHY T
Sbjct: 151 LLNAKVIIPMHYKT 164
>pir||G69994 conserved hypothetical protein ytkL - Bacillus subtilis
>gi|2293245|gb|AAC00323.1| (AF008220) YtkL [Bacillus
subtilis] >gi|2635406|emb|CAB14901.1| (Z99118) similar
to hypothetical proteins [Bacillus subtilis]
>gi|2635425|emb|CAB14919.1| (Z99119) similar to
hypothetical proteins [Bacillus subtilis]
Length = 100
Score = 71.8 bits (173), Expect = 7e-12
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 2 VKVKFLGHAAFYIEGSKK-ILIDPFLTGNPQAVAKPEDFKDVDLILVTHAHGDHIGDAGE 60
+KV + GH+ +E I+ DPFLTGN KPED K D+IL+TH H DH+GD +
Sbjct: 1 MKVTYHGHSVITVETKDHHIIFDPFLTGNSLTDIKPEDVK-ADVILLTHGHNDHVGDTEQ 59
Query: 61 IAKISGAKIVAMYDIANYIAEKFKGVETVGMNYG 94
IAK + A ++A ++A Y+ +KG+ M+ G
Sbjct: 60 IAKQNNALVIAPNELAVYLG--WKGLNVHPMHIG 91
>pir||E72773 hypothetical protein APE0176 - Aeropyrum pernix (strain K1)
>gi|5103566|dbj|BAA79087.1| (AP000058) 198aa long
hypothetical protein [Aeropyrum pernix]
Length = 198
Score = 71.8 bits (173), Expect = 7e-12
Identities = 57/161 (35%), Positives = 78/161 (48%), Gaps = 24/161 (14%)
Query: 41 DVDLILVTHAHGDHIGDAGEIAKISGAKIVAMYDIANYIAEKFKGVETVGMNYGPTEVDG 100
D D ILVTH H DH +A E+A+ K V ++F G + N GP V G
Sbjct: 19 DADYILVTHDHFDH--NAVEVARGKRTKEVL---------KRFYGSK----NLGPFTVTG 63
Query: 101 VFIVQVPAWHSSSDGKYSIGNASGFIVKLDGKTIYHAGDTYVFKDMELFSELYGPIDVAL 160
V + +H + G G + + V+++G ++ H GD EL P DV
Sbjct: 64 VKV-----YHDKAGGTLR-GEVAAYRVEVEGLSLVHLGDIGHVITSSSHPELSRP-DVLF 116
Query: 161 LPIGGHFTMGVKEAAKAVELLKPRTVVPMHYNTWPPISADP 201
+P+GG FT+ EA K VE L+PR VP+HY W P S P
Sbjct: 117 VPVGGTFTVNAAEAWKIVENLRPRIAVPIHY--WMPGSHLP 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88066782
Number of Sequences: 2977
Number of extensions: 3648556
Number of successful extensions: 8339
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8277
Number of HSP's gapped (non-prelim): 22
length of query: 225
length of database: 189,106,746
effective HSP length: 53
effective length of query: 172
effective length of database: 157,386,935
effective search space: 27070552820
effective search space used: 27070552820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)