BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0341 (korD) DE:2-ketoglutarate ferredoxin oxidoreductase,
subunit delta
(101 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75168 2-ketoglutarate ferredoxin oxidoreductase, chain del... 224 3e-58
pir||G69004 ferredoxin 2-oxoglutarate oxidoreductase delta subun... 85 2e-16
sp|Q57610|FER3_METJA PUTATIVE FERREDOXIN MJ0146 >gi|2128153|pir|... 83 1e-15
>pir||B75168 2-ketoglutarate ferredoxin oxidoreductase, chain delta PAB0341 -
Pyrococcus abyssi (strain Orsay)
>gi|5457935|emb|CAB49425.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit delta [Pyrococcus
abyssi]
Length = 101
Score = 224 bits (564), Expect = 3e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MLTNVNFAWGWGVSDQGGETQVTKEGYLVIGKASTTEISVDTFLCKGCGICVEMCPRKVF 60
MLTNVNFAWGWGVSDQGGETQVTKEGYLVIGKASTTEISVDTFLCKGCGICVEMCPRKVF
Sbjct: 1 MLTNVNFAWGWGVSDQGGETQVTKEGYLVIGKASTTEISVDTFLCKGCGICVEMCPRKVF 60
Query: 61 EWSKELSEKGVHYPVPVHVEKCVRCKLCELLCPDFAIAVRW 101
EWSKELSEKGVHYPVPVHVEKCVRCKLCELLCPDFAIAVRW
Sbjct: 61 EWSKELSEKGVHYPVPVHVEKCVRCKLCELLCPDFAIAVRW 101
>pir||G69004 ferredoxin 2-oxoglutarate oxidoreductase delta subunit homolog -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622135|gb|AAB85528.1| (AE000875) ferredoxin
(putative 2-oxoglutarate oxidoreductase, delat subunit)
[Methanobacterium thermoautotrophicum]
Length = 69
Score = 85.4 bits (208), Expect = 2e-16
Identities = 38/64 (59%), Positives = 45/64 (69%)
Query: 36 TEISVDTFLCKGCGICVEMCPRKVFEWSKELSEKGVHYPVPVHVEKCVRCKLCELLCPDF 95
T I +D+ LCKGC IC E CP + S+EL+ KGVH PVP ++EKC CKLC LLCPD
Sbjct: 2 TMIKIDSDLCKGCDICREFCPEGAYVRSEELNRKGVHEPVPENLEKCTGCKLCMLLCPDQ 61
Query: 96 AIAV 99
AI V
Sbjct: 62 AIVV 65
>sp|Q57610|FER3_METJA PUTATIVE FERREDOXIN MJ0146 >gi|2128153|pir||C64318 hypothetical
protein MJ0146 - Methanococcus jannaschii
>gi|1498915|gb|AAB98129.1| (U67471) 2-ketoglutarate
ferredoxin oxidoreductase, subunit delta (korD)
[Methanococcus jannaschii]
Length = 69
Score = 82.7 bits (201), Expect = 1e-15
Identities = 33/63 (52%), Positives = 48/63 (75%)
Query: 37 EISVDTFLCKGCGICVEMCPRKVFEWSKELSEKGVHYPVPVHVEKCVRCKLCELLCPDFA 96
+I ++ CKGC IC+ +CPR VFE SK+L++KG++ P+PV+ EKC +C LC L CPD A
Sbjct: 2 KIEINENFCKGCDICIVVCPRGVFEKSKKLNKKGIYPPIPVNPEKCTKCNLCILQCPDQA 61
Query: 97 IAV 99
I++
Sbjct: 62 ISI 64
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.139 0.478
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40143626
Number of Sequences: 2977
Number of extensions: 1504040
Number of successful extensions: 5333
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5327
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 189,106,746
effective HSP length: 43
effective length of query: 58
effective length of database: 163,371,805
effective search space: 9475564690
effective search space used: 9475564690
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 160 (66.7 bits)