BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0344 (korB-1) DE:2-ketoglutarate ferredoxin oxidoreductase,
subunit beta (korB-1)
(284 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75168 2-ketoglutarate ferredoxin oxidoreductase, chain bet... 575 e-163
pir||A71047 probable ferredoxin oxidoreductase beta subunit - Py... 560 e-159
sp|Q57957|KORB_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KET... 335 5e-91
pir||G75168 2-ketoglutarate ferredoxin oxidoreductase, chain bet... 321 5e-87
pir||E71046 probable ferredoxin oxidoreductase beta subunit - Py... 321 6e-87
sp|O27113|KORB_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KET... 306 2e-82
pir||C72380 hypothetical protein TM0405 - Thermotoga maritima (s... 241 7e-63
pir||A81400 2-oxoglutarate synthase (EC 1.2.7.3) beta chain Cj05... 226 2e-58
pir||H71919 chain of 2-oxoglutarate oxidoreductase - Helicobacte... 224 7e-58
pir||F64593 pyruvate synthase (EC 1.2.7.1) beta chain - Helicoba... 223 2e-57
gi|11498079 2-ketoglutarate ferredoxin oxidoreductase, subunit b... 219 4e-56
gb|AAC38212.1| (AF021094) OorB subunit of 2-oxoglutarate:accepto... 208 5e-53
pir||E70864 probable oxidoreductase - Mycobacterium tuberculosis... 161 1e-38
gb|AAD17274.1| (AF119361) ferredoxin oxidoreductase b-subunit [F... 159 3e-38
pir||JC4920 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) be... 159 4e-38
gb|AAK42927.1| 2-oxoacid--ferredoxin oxidoreductase, beta chain ... 159 5e-38
pir||H72626 probable 2-oxoacid--ferredoxin oxidoreductase, beta ... 157 2e-37
emb|CAC11405.1| (AL445063) probable pyruvate ferredoxin oxidored... 155 7e-37
gi|11498356 2-oxoacid ferredoxin oxidoreductase, subunit beta (o... 151 1e-35
pir||C72519 probable 2-oxoacid--ferredoxin oxidoreductase beta c... 149 3e-35
emb|CAC08295.1| (AL392148) putative oxidoreductase [Streptomyces... 148 7e-35
emb|CAB60188.1| (AL132824) putative oxidoreductase beta-subunit ... 147 2e-34
emb|CAC11903.1| (AL445065) probable 2-oxoacid ferredoxin oxidore... 147 2e-34
pir||S22397 pyruvate synthase (EC 1.2.7.1) beta chain [validated... 146 3e-34
dbj|BAB06092.1| (AP001515) pyruvate synthase beta subunit [Bacil... 146 3e-34
gb|AAG19012.1| (AE005001) pyruvate ferredoxin oxidoreductase, su... 143 2e-33
emb|CAA75642.1| (Y15464) ferredoxin oxidoreductase-like (beta su... 134 9e-31
pir||C72288 2-oxoacid ferredoxin oxidoreductase, beta subunit - ... 130 2e-29
sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORA... 127 1e-28
pir||H69170 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) be... 126 3e-28
gb|AAK42866.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin ... 88 1e-16
pir||F75046 pyruvate synthase (EC 1.2.7.1) beta chain PAB1476 - ... 86 5e-16
pir||F71114 probable ferredoxin oxidoreductase beta subunit - Py... 85 1e-15
sp|O58417|PORB_PYRHO PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 85 1e-15
gi|11499292 pyruvate ferredoxin oxidoreductase, subunit beta (po... 84 2e-15
pir||C70400 ferredoxin oxidoreductase beta subunit - Aquifex aeo... 84 2e-15
sp|Q57714|PORB_METJA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 83 3e-15
sp|Q51805|PORB_PYRFU PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 81 1e-14
sp|O27771|PORB_METTH PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OX... 77 3e-13
pir||D70403 ferredoxin oxidoreductase beta subunit - Aquifex aeo... 76 6e-13
dbj|BAA95606.1| (AB042412) pyruvate:ferredoxin oxidoreductase be... 75 8e-13
pir||G75085 indolepyruvate ferredoxin oxidoreductase, chain alph... 75 1e-12
gb|AAF91265.1|AF230199_7 (AF230199) pyruvate oxidoreductase beta... 75 1e-12
pir||D71055 probable indolepyruvate ferredoxin oxidoreductase al... 74 2e-12
gb|AAK41453.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin ... 73 5e-12
pir||G64658 probable pyruvate synthase (EC 1.2.7.1) beta chain -... 73 5e-12
gb|AAC02294.1| (AF013980) pyruvate:ferredoxin oxidoreductase bet... 73 5e-12
gb|AAC38207.1| (AF021092) PorB subunit of pyruvate:flavodoxin ox... 73 5e-12
pir||A71858 pyruvate ferrodoxin oxidoreductase - Helicobacter py... 73 5e-12
pir||B71114 probable ferredoxin oxidoreductase beta subunit - Py... 72 9e-12
sp|O58414|VORB_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB... 72 9e-12
sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ... 71 1e-11
emb|CAC11768.1| (AL445064) probable 2-ketovalerate ferredoxin ox... 70 3e-11
>pir||D75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta (korb-1)
PAB0344 - Pyrococcus abyssi (strain Orsay)
>gi|5457937|emb|CAB49427.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit beta (korB-1)
[Pyrococcus abyssi]
Length = 284
Score = 575 bits (1466), Expect = e-163
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MMPEVYSKYPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCS 60
MMPEVYSKYPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCS
Sbjct: 1 MMPEVYSKYPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCS 60
Query: 61 AWIASPYFLADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRN 120
AWIASPYFLADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRN
Sbjct: 61 AWIASPYFLADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRN 120
Query: 121 IDITVILVNNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWT 180
IDITVILVNNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWT
Sbjct: 121 IDITVILVNNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWT 180
Query: 181 TAHVYQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAK 240
TAHVYQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAK
Sbjct: 181 TAHVYQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAK 240
Query: 241 KMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLKEE 284
KMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLKEE
Sbjct: 241 KMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLKEE 284
>pir||A71047 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3258094|dbj|BAA30777.1| (AP000006) 284aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 284
Score = 560 bits (1428), Expect = e-159
Identities = 270/284 (95%), Positives = 282/284 (99%)
Query: 1 MMPEVYSKYPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCS 60
MMP++YSKYPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCS
Sbjct: 1 MMPKIYSKYPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCS 60
Query: 61 AWIASPYFLADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRN 120
AWIASPYFLADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRN
Sbjct: 61 AWIASPYFLADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRN 120
Query: 121 IDITVILVNNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWT 180
+DITVILVNNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLK+AETVAAAGASYVARWT
Sbjct: 121 VDITVILVNNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKVAETVAAAGASYVARWT 180
Query: 181 TAHVYQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAK 240
TAHVYQLIESIK+A+ TKGFSLVEVISQCPVQFGRRN+MKEPAEMLRWFLKNS+PISKAK
Sbjct: 181 TAHVYQLIESIKKALMTKGFSLVEVISQCPVQFGRRNKMKEPAEMLRWFLKNSIPISKAK 240
Query: 241 KMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLKEE 284
MSEEELEGKFV+GEFVKR+RPEFV+ELNKLIDEVQE+FGLKEE
Sbjct: 241 NMSEEELEGKFVVGEFVKRKRPEFVTELNKLIDEVQERFGLKEE 284
>sp|Q57957|KORB_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KETOGLUTARATE
OXIDOREDUCTASE BETA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2129229|pir||A64367 pyruvate synthase (EC 1.2.7.1)
beta chain - Methanococcus jannaschii
>gi|1591241|gb|AAB98531.1| (U67503) 2-ketoglutarate
ferredoxin oxidoreductase, subunit beta (korB)
[Methanococcus jannaschii]
Length = 270
Score = 335 bits (849), Expect = 5e-91
Identities = 153/270 (56%), Positives = 205/270 (75%), Gaps = 1/270 (0%)
Query: 9 YPMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYF 68
+P +KY+R++ LP C GCG G V+N F AI++L I P D + VSGIGCS+ + Y
Sbjct: 2 HPALKYMRQDRLPHIFCSGCGNGIVMNCFLKAIEELNIKPEDYIAVSGIGCSSRVPG-YL 60
Query: 69 LADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILV 128
D+LHTTHGR IAFATG+K+ PDK+VVV +GDGDLA+IGGNH IH RRNID+TVI +
Sbjct: 61 YCDSLHTTHGRPIAFATGIKIARPDKHVVVFTGDGDLAAIGGNHFIHGCRRNIDLTVICI 120
Query: 129 NNFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLI 188
NN IYGMTGGQV+PTTP+G TT PY +IE+ + + + AAGA+YVARWTTAH QL+
Sbjct: 121 NNNIYGMTGGQVSPTTPYGKKATTAPYGSIENTMDLCKMAIAAGATYVARWTTAHPIQLV 180
Query: 189 ESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELE 248
SIK+ I KGF+ +EV+SQCP +GR N ++PA+M+++ +NS+ ++KAK MSEEEL
Sbjct: 181 RSIKKGIQKKGFAFIEVVSQCPTYYGRFNISRKPADMIKFLKENSIHLNKAKDMSEEELN 240
Query: 249 GKFVIGEFVKRERPEFVSELNKLIDEVQEK 278
GK V+GEF+ E+PEFV EL+KLI++++ +
Sbjct: 241 GKIVVGEFLDIEKPEFVEELHKLIEKLKSE 270
>pir||G75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta (korb-2)
PAB0347 - Pyrococcus abyssi (strain Orsay)
>gi|5457940|emb|CAB49430.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit beta (korB-2)
[Pyrococcus abyssi]
Length = 281
Score = 321 bits (815), Expect = 5e-87
Identities = 157/271 (57%), Positives = 195/271 (71%), Gaps = 1/271 (0%)
Query: 13 KYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT 72
KYLRK+ LPT CPGCG G+VL AID L +DP +V VSGIGCS+ + + D
Sbjct: 12 KYLRKDMLPTIFCPGCGIGSVLQYTLRAIDDLGLDPDKIVWVSGIGCSSRVPG-FVNFDG 70
Query: 73 LHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFI 132
LHTTHGRA+AFATG+K+ P+ ++ GDGD A+IGGNHLIHA RRN+D+TVIL+NNF
Sbjct: 71 LHTTHGRALAFATGIKLANPELKIIAFMGDGDAAAIGGNHLIHAIRRNLDVTVILINNFT 130
Query: 133 YGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIK 192
YGMTGGQVAPTTP G TT PY E+P IA+ AAGA+YVARWT + Q I SIK
Sbjct: 131 YGMTGGQVAPTTPKGLRGTTAPYGQFENPFDIAQLAVAAGANYVARWTVFNYIQGINSIK 190
Query: 193 RAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFV 252
+A++ +GF+LVE +S CP+ FGRRNRMK E++RW+ K +VPI+KAKKM EELEGK V
Sbjct: 191 KALSKEGFTLVEFLSPCPISFGRRNRMKTAPELIRWYQKITVPINKAKKMKPEELEGKIV 250
Query: 253 IGEFVKRERPEFVSELNKLIDEVQEKFGLKE 283
IGEFV R+RP V E + I ++ G +E
Sbjct: 251 IGEFVDRDRPGLVREYKEYIKRAKKMMGWEE 281
>pir||E71046 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3258090|dbj|BAA30773.1| (AP000006) 281aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 281
Score = 321 bits (814), Expect = 6e-87
Identities = 156/271 (57%), Positives = 195/271 (71%), Gaps = 1/271 (0%)
Query: 13 KYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT 72
KYLRK+ LPT CPGCG G+VL AID+L +DP +V VSGIGCS+ + + D
Sbjct: 12 KYLRKDMLPTIFCPGCGIGSVLQFTLRAIDELGLDPDKIVWVSGIGCSSRVPG-FVNFDG 70
Query: 73 LHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFI 132
LHTTHGRA+AFATG+K+ P+ ++ GDGD A+IGGNHLIHA RRN+D+TVIL+NNF
Sbjct: 71 LHTTHGRALAFATGIKLANPELKIIAFMGDGDAAAIGGNHLIHAIRRNLDVTVILINNFT 130
Query: 133 YGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIK 192
YGMTGGQVAPTTP G TT PY E+P IA+ AAGA+YVARWT + Q I SIK
Sbjct: 131 YGMTGGQVAPTTPKGLRGTTAPYGQFENPFDIAQLAVAAGANYVARWTVFNYIQGINSIK 190
Query: 193 RAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFV 252
+A+T +GFSLVE +S CP+ FGRRN+MK E++RW+ K +VPI+KAKKM EELEGK +
Sbjct: 191 KALTKEGFSLVEFLSPCPISFGRRNKMKTAPEIIRWYQKITVPINKAKKMKPEELEGKII 250
Query: 253 IGEFVKRERPEFVSELNKLIDEVQEKFGLKE 283
IGEFV R RP V E + I ++ G ++
Sbjct: 251 IGEFVDRNRPGLVREYREYIKRAKKMMGWED 281
>sp|O27113|KORB_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KETOGLUTARATE
OXIDOREDUCTASE BETA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7431592|pir||A69005 2-oxoglutarate synthase (EC
1.2.7.3) beta chain MTH1034 [similarity] -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622137|gb|AAB85530.1| (AE000875) 2-oxoglutarate
oxidoreductase, beta subunit [Methanobacterium
thermoautotrophicum]
Length = 286
Score = 306 bits (776), Expect = 2e-82
Identities = 146/265 (55%), Positives = 189/265 (71%), Gaps = 1/265 (0%)
Query: 10 PMVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFL 69
P ++YLR+E LP C GCG G VLN+F ++ ID ++ +VSGIGCS+ I Y
Sbjct: 7 PYLRYLRRERLPHIFCAGCGNGIVLNSFFKGMEMAGIDFDNIAMVSGIGCSSRIPG-YVN 65
Query: 70 ADTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVN 129
D+LHTTHGR I+FATG+K+G P VVV +GDGD A+IGGNHLIH ARRNID+TVI +N
Sbjct: 66 CDSLHTTHGRPISFATGLKLGNPSLDVVVFTGDGDAAAIGGNHLIHGARRNIDMTVICIN 125
Query: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIE 189
N IYGMTGGQ++PT P G+ +T PY +E P +AE V AAGASYVARWTTAH QL
Sbjct: 126 NSIYGMTGGQISPTFPEGSYGSTAPYGALEDPFDLAELVTAAGASYVARWTTAHPLQLAN 185
Query: 190 SIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEG 249
SIK+ + +GFS +E ISQCP FGR+NRM+ P EM+R+ +NS+ KA KM +E+EG
Sbjct: 186 SIKKGLKNRGFSFIEAISQCPTYFGRKNRMRSPVEMMRFMKENSLNRRKALKMEPDEVEG 245
Query: 250 KFVIGEFVKRERPEFVSELNKLIDE 274
K ++GEF R +PE ++ ++DE
Sbjct: 246 KIIVGEFANRPQPELCEKICSMVDE 270
>pir||C72380 hypothetical protein TM0405 - Thermotoga maritima (strain MSB8)
>gi|4980910|gb|AAD35490.1|AE001720_4 (AE001720)
keto/oxoacid ferredoxin oxidoreductase, beta subunit,
putative [Thermotoga maritima]
Length = 266
Score = 241 bits (609), Expect = 7e-63
Identities = 125/261 (47%), Positives = 166/261 (62%), Gaps = 8/261 (3%)
Query: 11 MVKYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLA 70
++ YLR P+ CPGCG G VL AF A+D L + + VVSGIGCS+ A+ Y
Sbjct: 6 LISYLRPGRWPSVWCPGCGNGIVLKAFLEAVDDLALPKEKVAVVSGIGCSSR-ATGYLDF 64
Query: 71 DTLHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNN 130
+TLHT HGRAIAFATGVK+ PD VVV+ GDGD+ SIGGNH IHA RRNIDITV++ NN
Sbjct: 65 NTLHTLHGRAIAFATGVKLAKPDFEVVVMGGDGDILSIGGNHFIHACRRNIDITVVIFNN 124
Query: 131 FIYGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIES 190
IYGMTGGQV+ TTP T+TTP E P E +AGA++VAR T H L+
Sbjct: 125 MIYGMTGGQVSSTTPQYYQTSTTPLGAFEKPFDAVEIALSAGATFVARSTVYHYDHLVRV 184
Query: 191 IKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGK 250
+K+A+ +G S+V+V++ C FGR N M EP +M+ +F N+ + + + EGK
Sbjct: 185 LKKALQHRGISVVDVLTNCHTYFGRYNGMPEPHQMMEYFKNNTCFLERPE-------EGK 237
Query: 251 FVIGEFVKRERPEFVSELNKL 271
IG F + E+ +F++ +L
Sbjct: 238 IKIGIFREEEKEDFLTVYRRL 258
>pir||A81400 2-oxoglutarate synthase (EC 1.2.7.3) beta chain Cj0537 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968005|emb|CAB75173.1| (AL139075) OORB subunit of
2-oxoglutarate:acceptor oxidoreductase [Campylobacter
jejuni]
Length = 281
Score = 226 bits (570), Expect = 2e-58
Identities = 118/267 (44%), Positives = 162/267 (60%), Gaps = 2/267 (0%)
Query: 13 KYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT 72
+YLR + +PT C GCG G VL AI++L + D+ +VSGIGCS ++S Y +T
Sbjct: 7 EYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDDVCLVSGIGCSGRMSS-YVNCNT 65
Query: 73 LHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFI 132
+HTTHGRAIA+ATG+K+ P K+V+V+SGDGD +IGGNH IH RRNID+T I++NNFI
Sbjct: 66 VHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIGGNHTIHGCRRNIDLTHIVINNFI 125
Query: 133 YGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIK 192
YG+T Q +PTTP G T T + NI+ E AAGAS+VAR +L I
Sbjct: 126 YGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACELTKAAGASFVARGNVIEANKLENLIY 185
Query: 193 RAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFV 252
+A+ KG+S V+V S C + GR+N+M E ML W V +K + M EE + KF
Sbjct: 186 KALAHKGYSFVDVFSNCHINLGRKNKMGEAVAMLDWIKNRVVDKAKFESMDFEERKDKFP 245
Query: 253 IGEFVK-RERPEFVSELNKLIDEVQEK 278
G + +PE+ ++ +EK
Sbjct: 246 TGILHEDNSQPEYCHAYEEVRRAAKEK 272
>pir||H71919 chain of 2-oxoglutarate oxidoreductase - Helicobacter pylori
(strain J99) >gi|4155085|gb|AAD06120.1| (AE001486)
SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter
pylori J99]
Length = 273
Score = 224 bits (566), Expect = 7e-58
Identities = 117/267 (43%), Positives = 163/267 (60%), Gaps = 2/267 (0%)
Query: 13 KYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT 72
+YLR + +PT C GCG G +L + ID L D+ +VSGIGCS ++S Y +T
Sbjct: 7 EYLRVDKMPTLWCWGCGDGVILKSIIRTIDALGWKMDDVCLVSGIGCSGRMSS-YVNCNT 65
Query: 73 LHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFI 132
+HTTHGRA+A+ATG+K+ P K+V+V+SGDGD +IGGNH +HA RRNID+ ILVNNFI
Sbjct: 66 VHTTHGRAVAYATGIKLANPSKHVIVVSGDGDGFAIGGNHTMHACRRNIDLNFILVNNFI 125
Query: 133 YGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIK 192
YG+T Q +PTTP G T T + NI++ AAGAS+VAR + +L + +K
Sbjct: 126 YGLTNSQTSPTTPNGMWTVTAQWGNIDNQFDPCALTTAAGASFVARESVLDPQKLEKVLK 185
Query: 193 RAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFV 252
T KGFS +V S C + GR+N+M E ++ML+W V + + MS EE KF
Sbjct: 186 EGFTHKGFSFFDVHSNCHINLGRKNKMGEASQMLKWMESRLVSKRQFEAMSPEERVDKFP 245
Query: 253 IGEFV-KRERPEFVSELNKLIDEVQEK 278
G +R E+ ++I++ Q K
Sbjct: 246 TGVLKHDTDRKEYCEAYQEIIEKAQGK 272
>pir||F64593 pyruvate synthase (EC 1.2.7.1) beta chain - Helicobacter pylori
(strain 26695) >gi|2313708|gb|AAD07655.1| (AE000572)
ferredoxin oxidoreductase, beta subunit [Helicobacter
pylori 26695]
Length = 273
Score = 223 bits (562), Expect = 2e-57
Identities = 116/267 (43%), Positives = 163/267 (60%), Gaps = 2/267 (0%)
Query: 13 KYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT 72
+YLR + +PT C GCG G +L + ID L D+ +VSGIGCS ++S Y +T
Sbjct: 7 EYLRVDKIPTLWCWGCGDGVILKSIIRTIDALGWKMDDVCLVSGIGCSGRMSS-YVNCNT 65
Query: 73 LHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFI 132
+HTTHGRA+A+ATG+K+ P K+V+V+SGDGD +IGGNH +HA RRNID+ ILVNNFI
Sbjct: 66 VHTTHGRAVAYATGIKMANPSKHVIVVSGDGDGFAIGGNHTMHACRRNIDLNFILVNNFI 125
Query: 133 YGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIK 192
YG+T Q +PTTP G T T + NI++ AAGAS+VAR + +L + +K
Sbjct: 126 YGLTNSQTSPTTPNGMWTVTAQWGNIDNQFDPCALTTAAGASFVARESVLDPQKLEKVLK 185
Query: 193 RAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFV 252
+ KGFS +V S C + GR+N+M E ++ML+W V + + MS EE KF
Sbjct: 186 EGFSHKGFSFFDVHSNCHINLGRKNKMGEASQMLKWMESRLVSKRQFEAMSPEERVDKFP 245
Query: 253 IGEFV-KRERPEFVSELNKLIDEVQEK 278
G +R E+ ++I++ Q K
Sbjct: 246 TGVLKHDTDRKEYCEAYQEIIEKAQGK 272
>gi|11498079 2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB)
[Archaeoglobus fulgidus]
>gi|6685588|sp|O29782|KORB_ARCFU 2-OXOGLUTARATE SYNTHASE
SUBUNIT KORB (2-KETOGLUTARATE OXIDOREDUCTASE BETA CHAIN)
(KOR) (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA
SUBUNIT) >gi|7431593|pir||D69308 probable 2-oxoglutarate
synthase (EC 1.2.7.3) beta chain - Archaeoglobus
fulgidus >gi|2650160|gb|AAB90769.1| (AE001072)
2-ketoglutarate ferredoxin oxidoreductase, subunit beta
(korB) [Archaeoglobus fulgidus]
Length = 267
Score = 219 bits (551), Expect = 4e-56
Identities = 123/258 (47%), Positives = 163/258 (62%), Gaps = 11/258 (4%)
Query: 14 YLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTL 73
YLR E LPT C GC G VL +F A+ + + VVVSGIGCS I Y +T+
Sbjct: 8 YLRTEMLPTIWCAGCPNGIVLASFIRAVKR-GFERDKTVVVSGIGCSGRITQ-YLDFETV 65
Query: 74 HTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIY 133
HTTHGRA+AFATG+K+ P+ VVV GDGD +IGGNH IHA RRNID+T +++NN +Y
Sbjct: 66 HTTHGRALAFATGIKLAKPELNVVVFMGDGDAVAIGGNHFIHACRRNIDLTAVVINNSLY 125
Query: 134 GMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKR 193
GMTGGQ+APTTP GA T T+PY N+E P IA+ AAGASYVAR+T + ++I
Sbjct: 126 GMTGGQLAPTTPEGAKTKTSPYGNVERPFDIAKLAIAAGASYVARFTAYQPRWIEKAIFE 185
Query: 194 AITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFVI 253
A+ GFS+VEV++ CP R+K PA++L+ +N + +S +E++ I
Sbjct: 186 AMQHHGFSVVEVVTGCPT----HQRIK-PADLLKHLKEN---FRRRDNVSLDEIQ-PTDI 236
Query: 254 GEFVKRERPEFVSELNKL 271
G F K EF ++ KL
Sbjct: 237 GVFKKEVMEEFCEKIEKL 254
>gb|AAC38212.1| (AF021094) OorB subunit of 2-oxoglutarate:acceptor oxidoreductase
[Helicobacter pylori]
Length = 274
Score = 208 bits (525), Expect = 5e-53
Identities = 112/268 (41%), Positives = 161/268 (59%), Gaps = 3/268 (1%)
Query: 13 KYLRKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT 72
+YLR + +PT C GCG G +L + ID L D+ +VSGIGCS ++S Y +T
Sbjct: 7 EYLRVDKIPTLWCWGCGDGVILKSIIRTIDALGWKMDDVCLVSGIGCSGRMSS-YVNCNT 65
Query: 73 LHTTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFI 132
+HTTHGRA+A+ATG+K+ P K+V+V+SGDGD +IGGNH +HA RRNID+ ILVNNFI
Sbjct: 66 VHTTHGRAVAYATGIKMANPSKHVIVVSGDGDGFAIGGNHTMHACRRNIDLNFILVNNFI 125
Query: 133 YGMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIK 192
YG+T ++ P P G + T + NI++ AAGAS+VAR + +L + +K
Sbjct: 126 YGLTTPKLRPPRPNGMWSVTAQWGNIDNQFDPCALTTAAGASFVARESVLDPQKLEKVLK 185
Query: 193 RAITTKGFSLV-EVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKF 251
+ KGFS +V S C + GR+N+M E ++ML+W V + + MS EE KF
Sbjct: 186 EGFSHKGFSFFDDVHSNCHINLGRKNKMGEASQMLKWMESRLVSKRQFEAMSPEERVDKF 245
Query: 252 VIGEFV-KRERPEFVSELNKLIDEVQEK 278
G +R E+ ++I++ Q K
Sbjct: 246 PTGVLKHDTDRKEYCEAYQEIIEKAQGK 273
>pir||E70864 probable oxidoreductase - Mycobacterium tuberculosis (strain H37RV)
>gi|2791494|emb|CAA16031.1| (AL021246) hypothetical
protein Rv2454c [Mycobacterium tuberculosis]
Length = 373
Score = 161 bits (402), Expect = 1e-38
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 3/188 (1%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT-LHTTHGRAIAF 83
CPGCG +LN N + +L + ++V +SGIGCS+ PY+L H+ HGRA A
Sbjct: 56 CPGCGDYVILNTIRNFLPELGLRRENIVFISGIGCSSRF--PYYLETYGFHSIHGRAPAI 113
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
ATG+ + D V V++GDGD SIGGNHLIHA RRNI++T++L NN IYG+T GQ +PT
Sbjct: 114 ATGLALAREDLSVWVVTGDGDALSIGGNHLIHALRRNINVTILLFNNRIYGLTKGQYSPT 173
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
+ G +T +TP +++HP A A++V R + L E ++ A +G +LV
Sbjct: 174 SEVGKVTKSTPMGSLDHPFNPVSLALGAEATFVGRALDSDRNGLTEVLRAAAQHRGAALV 233
Query: 204 EVISQCPV 211
E++ CP+
Sbjct: 234 EILQDCPI 241
>gb|AAD17274.1| (AF119361) ferredoxin oxidoreductase b-subunit [Frankia sp. EuIK1]
Length = 346
Score = 159 bits (399), Expect = 3e-38
Identities = 78/187 (41%), Positives = 115/187 (60%), Gaps = 3/187 (1%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT-LHTTHGRAIAF 83
CPGCG +LN N + L I + VVVSGIGCS+ + PY+L +H+ HGRA +
Sbjct: 24 CPGCGDHAILNGMRNLLPTLGIPRENFVVVSGIGCSSRL--PYYLETYGVHSIHGRAPSI 81
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
ATG+ + PD V V++GDGD SIGGNHLIHA RRN+++ ++++NN IYG+T GQ +P
Sbjct: 82 ATGISINRPDLSVWVVTGDGDSLSIGGNHLIHAVRRNVNLKIVMLNNQIYGLTKGQFSPA 141
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
T G +T ++P+ +++H A A A+++AR ++E + A G +LV
Sbjct: 142 TKPGTVTPSSPFGSLDHSFNPAALALGAEATFLARTVDTDRKHMLEMLAAAYAHDGSALV 201
Query: 204 EVISQCP 210
E+ CP
Sbjct: 202 EIRQNCP 208
>pir||JC4920 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) beta chain -
Sulfolobus sp. (strain 7) >gi|1565184|dbj|BAA10899.1|
(D64024) 2-oxoacid:ferredoxin oxidoreductase subunit
beta [Sulfolobus sp. 7]
Length = 305
Score = 159 bits (398), Expect = 4e-38
Identities = 86/189 (45%), Positives = 114/189 (59%), Gaps = 5/189 (2%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTL---HTTHGRAI 81
CPGCG +LNA AI +L +D +++VVVSGIGCS I P+F + HT HGRAI
Sbjct: 12 CPGCGNFGILNAEQQAIVELGVDTKNVVVVSGIGCSGKI--PHFFRTPISGVHTLHGRAI 69
Query: 82 AFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVA 141
AFATG+K+ PD V+V GDGDL IG H + A RRN+D+ VIL +N +YG+T GQ +
Sbjct: 70 AFATGIKLSNPDLVVIVNGGDGDLLGIGAGHFVAAGRRNVDMVVILHDNGVYGLTKGQAS 129
Query: 142 PTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFS 201
PT G + P NI + ++G ++VAR V L E IK AI KG +
Sbjct: 130 PTLKRGEKPKSLPRPNINDAVNPIALAISSGYTFVARGYAYDVKHLKELIKSAIKHKGLA 189
Query: 202 LVEVISQCP 210
L++V+ CP
Sbjct: 190 LIDVLQPCP 198
>gb|AAK42927.1| 2-oxoacid--ferredoxin oxidoreductase, beta chain [Sulfolobus
solfataricus]
Length = 316
Score = 159 bits (397), Expect = 5e-38
Identities = 82/189 (43%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFL---ADTLHTTHGRAI 81
CPGCG +L+A AI +L +DP+ +V+VSGIGCS I P+F+ A +HT HGRA+
Sbjct: 23 CPGCGNFGILSAEQQAIQELGLDPKKVVLVSGIGCSGKI--PHFIRLPASGVHTLHGRAL 80
Query: 82 AFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVA 141
FA G+K+ P V+V GDGD IG H + A RRN+D+TVI+ NN +YG+T GQ +
Sbjct: 81 TFAIGIKLANPSLEVIVNGGDGDQLGIGVGHFVSAGRRNVDLTVIVHNNGVYGLTKGQAS 140
Query: 142 PTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFS 201
PT G T + P NI + ++G ++VAR V L E IK+AI KG +
Sbjct: 141 PTLKLGVKTKSLPKPNINSDINPIALAISSGYTFVARGYAYDVKHLKEIIKKAIKHKGLA 200
Query: 202 LVEVISQCP 210
+++V+ CP
Sbjct: 201 MIDVLQPCP 209
>pir||H72626 probable 2-oxoacid--ferredoxin oxidoreductase, beta chain APE1472 -
Aeropyrum pernix (strain K1) >gi|5105156|dbj|BAA80470.1|
(AP000061) 309aa long hypothetical 2-oxoacid--ferredoxin
oxidoreductase , beta chain [Aeropyrum pernix]
Length = 309
Score = 157 bits (392), Expect = 2e-37
Identities = 81/186 (43%), Positives = 106/186 (56%), Gaps = 1/186 (0%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAFA 84
CPGCG +LN+ A+ +L IDP +L VV GIGCS + Y H HGRAI A
Sbjct: 17 CPGCGDFGILNSIYRAVSELGIDPENLAVVGGIGCSGR-TTYYVKGSNFHALHGRAIPVA 75
Query: 85 TGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPTT 144
TGVK+ P V+V GDGDL IGG H + RRN++ITV+L +N +YG+T GQ APT
Sbjct: 76 TGVKLANPHLNVIVAGGDGDLMGIGGGHFVALGRRNLNITVLLFDNAVYGLTKGQAAPTL 135
Query: 145 PFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLVE 204
P T NI + AAG +++AR H QL E IK A+ +G +LV+
Sbjct: 136 PAWVKTKALSMPNIHDNINPVLLAFAAGYTFIARGYAYHTQQLKELIKTAVRHRGAALVD 195
Query: 205 VISQCP 210
++ CP
Sbjct: 196 ILQPCP 201
>emb|CAC11405.1| (AL445063) probable pyruvate ferredoxin oxidoreductase, beta
subunit [Thermoplasma acidophilum]
Length = 285
Score = 155 bits (387), Expect = 7e-37
Identities = 99/261 (37%), Positives = 141/261 (53%), Gaps = 7/261 (2%)
Query: 16 RKEALPTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT-LH 74
+ + +P CPGCG L+A A+ +LKIDP+D+VV SGIGCS+ + P FL H
Sbjct: 10 KNKRVPPDWCPGCGNFAQLSAITMALAELKIDPKDVVVASGIGCSSNM--PEFLNTYGFH 67
Query: 75 TTHGRAIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYG 134
HGR + FA GVK V+ GDGD G H H A+RN+DIT ++ +N ++G
Sbjct: 68 GLHGRLVPFAAGVKWANSKLTVIAYGGDGDGFFEGTQHFYHTAKRNVDITYMVSDNQVFG 127
Query: 135 MTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRA 194
+T GQ +PT P G T TTP NIE P AGA++VAR + + L + RA
Sbjct: 128 LTTGQASPTAPIGLKTKTTPDGNIETPFNPIAFALNAGATFVARAFSGDIKHLKDITVRA 187
Query: 195 ITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVP-ISKAKKMSEEELEGKFVI 253
I KGFS ++VIS C V + + N + + N V +A K++ E I
Sbjct: 188 IKHKGFSFIDVISPC-VTWNKENSYEYFRPRVYHLENNDVTNFDQAYKLA-FEWGDHIPI 245
Query: 254 GEFVKRERPEFVSELNKLIDE 274
G F + ERP + +L++++ E
Sbjct: 246 GVFYEVERPTY-EDLDEVLKE 265
>gi|11498356 2-oxoacid ferredoxin oxidoreductase, subunit beta (orB)
[Archaeoglobus fulgidus] >gi|7431604|pir||F69343
2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) beta
chain - Archaeoglobus fulgidus
>gi|2649862|gb|AAB90490.1| (AE001053) 2-oxoacid
ferredoxin oxidoreductase, subunit beta (orB)
[Archaeoglobus fulgidus]
Length = 245
Score = 151 bits (377), Expect = 1e-35
Identities = 92/231 (39%), Positives = 124/231 (52%), Gaps = 5/231 (2%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAFA 84
CPGCG +L AF A ++ + D+ V SGIGC I S Y H HGR F
Sbjct: 7 CPGCGNFAILKAFERASRRVIEEGFDIAVSSGIGCHGKI-SDYLSLPGFHVIHGRVPPFL 65
Query: 85 TGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPTT 144
TG+K+ P+ VV SGDGD + G HL+HAARRN DIT+IL NN ++G+T GQV T+
Sbjct: 66 TGLKLANPNLVVVGFSGDGDGLNEGVEHLVHAARRNTDITIILHNNGVFGLTTGQVTATS 125
Query: 145 PFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLVE 204
P G + +TP N E+PL + +GA++VAR +L E A+ KGFS VE
Sbjct: 126 PRGRKSRSTPRGNPEYPLNPCHLMLVSGATFVARVFAGEQERLSEVFYNAMKHKGFSFVE 185
Query: 205 VISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFVIGE 255
V+ C V F N E + + W ++S + K S+ + G F E
Sbjct: 186 VMQPC-VSF---NNFWEMRKEIYWIERSSDLLEAMKNCSDAKACGIFYAEE 232
>pir||C72519 probable 2-oxoacid--ferredoxin oxidoreductase beta chain APE2128 -
Aeropyrum pernix (strain K1) >gi|5105827|dbj|BAA81139.1|
(AP000063) 318aa long hypothetical 2-oxoacid--ferredoxin
oxidoreductase beta chain [Aeropyrum pernix]
Length = 318
Score = 149 bits (373), Expect = 3e-35
Identities = 78/186 (41%), Positives = 112/186 (59%), Gaps = 3/186 (1%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFL-ADTLHTTHGRAIAF 83
CPGCG +L A A +L +DP VVVSGIGCS+ +P+F+ + +HT HGR IAF
Sbjct: 18 CPGCGDFGILAAMQKAFAELNLDPAQTVVVSGIGCSS--KTPHFINVNGVHTIHGRGIAF 75
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
ATG+K+ P V+V GDGDL IG H + RRN+D+TV++ NN +YG+T GQ +PT
Sbjct: 76 ATGIKLANPQLKVIVNGGDGDLLGIGVAHFVALGRRNLDVTVLIHNNKVYGLTKGQASPT 135
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
G + P N++ + A+G ++VAR + V L E +K AI KG +++
Sbjct: 136 LRRGEKVKSLPVPNLQDAVNPIALAIASGYTFVARAYSLWVDHLKEILKAAINHKGSAVI 195
Query: 204 EVISQC 209
+V+ C
Sbjct: 196 DVLQPC 201
>emb|CAC08295.1| (AL392148) putative oxidoreductase [Streptomyces coelicolor]
Length = 352
Score = 148 bits (370), Expect = 7e-35
Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 3/188 (1%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT-LHTTHGRAIAF 83
CPGCG +L A + QL + ++V VSGIGCS+ PY++ +H+ HGRA A
Sbjct: 32 CPGCGDYAILAAVQGFMPQLGLARENIVFVSGIGCSSRF--PYYMNTYGMHSIHGRAPAI 89
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
ATG+ D V V++GDGD SIGGNHLIHA RRN+++ ++L NN IYG+T GQ +PT
Sbjct: 90 ATGLATSRRDLSVWVVTGDGDALSIGGNHLIHALRRNVNLKILLFNNRIYGLTKGQYSPT 149
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
+ G IT +TP +++ P A AS+VAR + L E +++A G +L+
Sbjct: 150 SEVGKITKSTPMGSLDAPFNPISLALGAEASFVARTVDSDRKHLTEVLRQAAEHPGTALI 209
Query: 204 EVISQCPV 211
E+ C +
Sbjct: 210 EIYQNCNI 217
>emb|CAB60188.1| (AL132824) putative oxidoreductase beta-subunit [Streptomyces
coelicolor]
Length = 350
Score = 147 bits (367), Expect = 2e-34
Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 3/188 (1%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADT-LHTTHGRAIAF 83
CPGCG +L A + QL + ++V VSGIGCS+ PY++ +H+ HGRA A
Sbjct: 32 CPGCGDYAILAAVQGFMPQLGLARENIVFVSGIGCSSRF--PYYMNTYGMHSIHGRAPAI 89
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
ATG+ D V V++GDGD SIGGNHLIHA RRN+++ ++L NN IYG+T GQ +PT
Sbjct: 90 ATGLATSRRDLSVWVVTGDGDALSIGGNHLIHALRRNVNLKILLFNNRIYGLTKGQYSPT 149
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
+ G IT +TP +++ P A AS+VAR + L E +++A G +L+
Sbjct: 150 SEVGKITKSTPMGSLDAPFNPIFLALGAEASFVARTVDSDRKHLTEVLRQAAEHPGTALI 209
Query: 204 EVISQCPV 211
E+ C +
Sbjct: 210 EIYQNCNI 217
>emb|CAC11903.1| (AL445065) probable 2-oxoacid ferredoxin oxidoreductase, beta chain
[Thermoplasma acidophilum]
Length = 309
Score = 147 bits (367), Expect = 2e-34
Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 32/274 (11%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFL-ADTLHTTHGRAIAF 83
CPGCG +L A +A+ +L + P D+ V+SGIGCS +P+++ A HT HGRAI
Sbjct: 16 CPGCGDFGILTALTSALQELNLGPHDVAVISGIGCSG--KTPHYVNAAGAHTLHGRAIPV 73
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
A GVK+ P V+V GDGDL SIG HL+ RRN ITV++ +N +YG+T GQ APT
Sbjct: 74 AVGVKLTNPKLKVIVTGGDGDLMSIGAGHLVAEGRRNSGITVLMYDNAVYGLTKGQAAPT 133
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
G T + NI + + G S+VAR + + L IK+A+ G S +
Sbjct: 134 LKLGVQTKSLARPNIYDAINPIMLAISTGYSFVARGFSFEIAHLKNIIKQAVMFPGSSFI 193
Query: 204 EVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPIS--------------KAKKMSEEELEG 249
+++ CP + N M W+ K + KA++ +E
Sbjct: 194 DILQPCPT-YNNINTMD-------WYKKRVYKLDDDKSWDPVVTENDPKAEEKYNRAIEK 245
Query: 250 KFVIGE-------FVKRERPEFVSELNKLIDEVQ 276
F G+ +V ++ P F L + +D +
Sbjct: 246 SFEWGDRIPIGVFYVNKKIPPFTERLKQYVDNYE 279
>pir||S22397 pyruvate synthase (EC 1.2.7.1) beta chain [validated] -
Halobacterium salinarum >gi|43499|emb|CAA45826.1|
(X64521) pyruvate synthase [Halobacterium halobium]
>gi|10580667|gb|AAG19513.1| (AE005043) putative
2-ketoglutarate ferredoxin oxidoreductase (beta); KorB
[Halobacterium sp. NRC-1]
Length = 312
Score = 146 bits (365), Expect = 3e-34
Identities = 76/186 (40%), Positives = 109/186 (57%), Gaps = 1/186 (0%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAFA 84
CPGCG VL A A+ +L DP ++++ +GIGCS + S YF + HT HGR++ A
Sbjct: 30 CPGCGDFGVLKALKGAMAELGKDPEEILLATGIGCSGKLNS-YFDSYGFHTIHGRSLPVA 88
Query: 85 TGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPTT 144
K+ D VV GDGD IGGNH +H AR N DIT I+ NN ++G+T GQ +PT+
Sbjct: 89 RAAKLANHDLEVVAAGGDGDGYGIGGNHFMHTARENHDITYIVFNNEVFGLTKGQTSPTS 148
Query: 145 PFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLVE 204
P G + T P+ + + P++ +GASYVAR + Q + + AI GF+ V+
Sbjct: 149 PKGHKSKTQPHGSAKSPIRPLSLSMTSGASYVARTAAVNPNQAKDILVEAIQHDGFAHVD 208
Query: 205 VISQCP 210
++QCP
Sbjct: 209 FLTQCP 214
>dbj|BAB06092.1| (AP001515) pyruvate synthase beta subunit [Bacillus halodurans]
Length = 288
Score = 146 bits (364), Expect = 3e-34
Identities = 84/213 (39%), Positives = 118/213 (54%), Gaps = 9/213 (4%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAFA 84
CPGCG +V A A + ++P L V+SGIGCS I S Y A H HGR + A
Sbjct: 16 CPGCGDFSVQAAIQRAAANVGLEPDQLAVISGIGCSGRI-SGYINAYGFHGVHGRVLPIA 74
Query: 85 TGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPTT 144
GVK+ D V+ GDGD +IG H +HA RRNI+IT I+++N IYG+T GQ +P +
Sbjct: 75 QGVKMANRDVTVIASGGDGDGFAIGMGHTVHAIRRNINITYIVMDNQIYGLTKGQTSPRS 134
Query: 145 PFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLVE 204
G T +TP ++E L + E AGA++VA+ ++ + +L I++ I GFSL+
Sbjct: 135 DVGFKTKSTPSGSVESALNVMEMALTAGATFVAQSFSSDLKELTALIEKGINHNGFSLIN 194
Query: 205 VISQCPVQFGRRNRMKEPAEMLRWFLKNSVPIS 237
V S C V F + N WF +N +S
Sbjct: 195 VFSPC-VTFNKVNTYD-------WFKENLTKLS 219
>gb|AAG19012.1| (AE005001) pyruvate ferredoxin oxidoreductase, subunit beta; PorB
[Halobacterium sp. NRC-1]
Length = 289
Score = 143 bits (357), Expect = 2e-33
Identities = 77/185 (41%), Positives = 106/185 (56%), Gaps = 1/185 (0%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAFA 84
CPGCG +N A+ + P D VV+GIGCS I + Y + LH HGRA+
Sbjct: 20 CPGCGDFGTMNGMMKALAETGNSPDDTFVVAGIGCSGKIGT-YMRSYALHGVHGRALPVG 78
Query: 85 TGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPTT 144
TGVK+ PD V+V GDGD SIG H IHA RRN+DIT ++++N IYG+T GQ +PT+
Sbjct: 79 TGVKLANPDLEVMVAGGDGDGYSIGAGHFIHAVRRNVDITYVVMDNRIYGLTKGQASPTS 138
Query: 145 PFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLVE 204
T+T+P + P+ AAG S++A+ ++ + E ++ AI GFSLV
Sbjct: 139 RSDFETSTSPDGPKQPPVNPLALAMAAGGSFIAQSFSSDALRHQEIVQEAIEHDGFSLVN 198
Query: 205 VISQC 209
S C
Sbjct: 199 TFSPC 203
>emb|CAA75642.1| (Y15464) ferredoxin oxidoreductase-like (beta subunit) [Thermus
thermophilus]
Length = 305
Score = 134 bits (335), Expect = 9e-31
Identities = 93/272 (34%), Positives = 127/272 (46%), Gaps = 21/272 (7%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFL-ADTLHTTHGRAIAF 83
CPGCG +L+A A+ +LK DP V SGIGCSA +P++L +HT HGR +
Sbjct: 18 CPGCGDYGILSALQMALFELKRDPSQTAVFSGIGCSA--KTPHYLNVYGVHTLHGRVLPV 75
Query: 84 ATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAPT 143
A G K+ P VV + GDGD IG H + A RRN+D+ IL +N +YG+T GQ PT
Sbjct: 76 AQGAKLANPHLTVVAVGGDGDGLGIGAGHFVAAGRRNVDMLYILYDNEVYGLTKGQAGPT 135
Query: 144 TPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSLV 203
G T + P N + L AAG +++AR V L E IK I +G + +
Sbjct: 136 LGLGEKTKSLPKPNPQSRLNPLLLAFAAGYTWIARGYAYDVKGLKELIKEGIEHRGLAFL 195
Query: 204 EVISQCPVQ--------------FGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELE- 248
V+ CP R R P + F + S SK E+ LE
Sbjct: 196 HVLQPCPTYNDLHTKEWFAPPGFTSSRKRATTPMSP-QGFPRRSW-TSKMMLFQEKALEW 253
Query: 249 -GKFVIGEFVKRERPEFVSELNKLIDEVQEKF 279
+ +G F K E P F + L + E +
Sbjct: 254 GERIPVGVFWKAELPTFEARLKAYLPRYPEAY 285
>pir||C72288 2-oxoacid ferredoxin oxidoreductase, beta subunit - Thermotoga
maritima (strain MSB8)
>gi|4981714|gb|AAD36241.1|AE001773_10 (AE001773)
2-oxoacid ferredoxin oxidoreductase, beta subunit
[Thermotoga maritima]
Length = 282
Score = 130 bits (324), Expect = 2e-29
Identities = 83/246 (33%), Positives = 123/246 (49%), Gaps = 3/246 (1%)
Query: 23 ALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIA 82
A CPGCG + A A+++L +DPR +V+VSGIG +A + Y + + HGRA+
Sbjct: 12 AWCPGCGNFGIRTALMKALEELNVDPRQVVIVSGIGQAAKMPQ-YVGVNMFNGLHGRALP 70
Query: 83 FATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAP 142
AT +K P+ V+ SGDG + GGNH IH RRN DI I+ +N +YG+T GQ +P
Sbjct: 71 VATAIKTTNPNLLVIAESGDGCMYGEGGNHFIHTIRRNPDIVNIVHDNQVYGLTKGQASP 130
Query: 143 TTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSL 202
T+ G T I P A AS+VAR + + +K A+ KG++L
Sbjct: 131 TSLKGFKTPVQVDGVILEPFNPLAVAIALDASFVARTFIGDIEFTKDILKEAMKHKGYAL 190
Query: 203 VEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEGKFVIGEFVKRERP 262
V+++ C V F + N + E ++LK+ P + K +G F +
Sbjct: 191 VDILQPC-VTFNKLNTYEWYREN-TYYLKDHDPTDRELAFKRAIETEKLPLGIFYVNKNK 248
Query: 263 EFVSEL 268
E EL
Sbjct: 249 ETFEEL 254
>sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORA (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE ALPHA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE ALPHA SUBUNIT) >gi|7482018|pir||B69194
2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) beta
chain - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621791|gb|AAB85210.1| (AE000849)
2-oxoisovalerate oxidoreductase, alpha subunit
[Methanobacterium thermoautotrophicum]
Length = 477
Score = 127 bits (317), Expect = 1e-28
Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 36/278 (12%)
Query: 22 TALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAI 81
T C GCG G + A+D+L I R V++S +GC+ + A YF + HGRA
Sbjct: 27 THYCAGCGHGILHKLIGEAMDELGIQER-AVMISPVGCAVF-AYYYFDCGNVQVAHGRAP 84
Query: 82 AFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVA 141
A TG+ D V++ GDGDLASIG N I AA R + V VNN +YGMTGGQ+A
Sbjct: 85 AVGTGISRAEDDAVVILYQGDGDLASIGLNETIQAANRGEKLAVFFVNNTVYGMTGGQMA 144
Query: 142 PTTPFGAITTTTPY----RNIEHPLKIAETVAAAGAS-YVARWTTA---HVYQLIESIKR 193
PTT G +T T P R +PL + E + A ++ R + A + + +IKR
Sbjct: 145 PTTLVGEVTVTCPTGRDPRYAGYPLHMCELLDNLQAPVFIERVSLADPKRIRRARRAIKR 204
Query: 194 AITT----KGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEEELEG 249
A+ KG++ VEV+S CP +++ AE FLK EE+E
Sbjct: 205 ALEIQRDGKGYAFVEVLSPCP------TNLRQDAEGAERFLK-------------EEMEK 245
Query: 250 KFVIGEFVKRE---RPEFVSELNKLIDEVQEKFGLKEE 284
+F + F R P SE + + + F ++E+
Sbjct: 246 EFPVKNFRDRSAETEPLIRSESDFSRESLDRIFQIRED 283
>pir||H69170 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) beta chain -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621611|gb|AAB85043.1| (AE000836)
2-oxoacid:ferredoxin oxidoreductase, beta subunit
[Methanobacterium thermoautotrophicum]
Length = 288
Score = 126 bits (313), Expect = 3e-28
Identities = 74/195 (37%), Positives = 104/195 (52%), Gaps = 2/195 (1%)
Query: 23 ALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIA 82
A CPGCG ++L A A+ L I P LV+VSGIG + + Y + + HGR++
Sbjct: 13 AWCPGCGNFSILRALKMALADLDILPERLVLVSGIGQAGKLPQ-YLKCNHFNGLHGRSLP 71
Query: 83 FATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQVAP 142
A +K P V+ +SGDG + GGNHLIH RRN DIT I+ N +YG+T GQ +P
Sbjct: 72 AAVAIKATNPQLTVIDVSGDGCMYGEGGNHLIHNIRRNPDITTIVHGNMVYGLTKGQASP 131
Query: 143 TTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGFSL 202
T+ G T E P A GA++VAR + V + + + AI+ G++L
Sbjct: 132 TSQPGFRTPVQVQGVFEEPFNPLAVAVALGATFVARAFSGDVERTRDILVEAISHHGYAL 191
Query: 203 VEVISQCPVQFGRRN 217
V++ C V F R N
Sbjct: 192 VDIFQPC-VTFNRVN 205
>gb|AAK42866.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase
beta chain) (porB-2) [Sulfolobus solfataricus]
Length = 299
Score = 87.8 bits (214), Expect = 1e-16
Identities = 64/197 (32%), Positives = 95/197 (47%), Gaps = 14/197 (7%)
Query: 22 TALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIA--SPY--FLADTLHTTH 77
T+ CPGC + + +D+V+V GCS+ I +PY + T++
Sbjct: 19 TSACPGCPENMAMRMLGMGLG------KDVVLVVVAGCSSVIQGNAPYNAYNFPTVNVAF 72
Query: 78 GRAIAFATGVKVGLPDK----YVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIY 133
A A G+ K +VV +GDG A IG L AA RN +I + V+N Y
Sbjct: 73 AAGPATAAGLARAYKQKGKNVTIVVWAGDGGSADIGFASLSGAAERNDNILYLTVDNEAY 132
Query: 134 GMTGGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKR 193
+GGQ + +TPFGAITTTTP E+ + + A YVA + + + IE +K+
Sbjct: 133 MNSGGQRSGSTPFGAITTTTPEGKKENKKNLPLLMIAHNVPYVATASVGYPHDYIEKLKK 192
Query: 194 AITTKGFSLVEVISQCP 210
A +GF V V++ P
Sbjct: 193 ARQVEGFRYVHVLTPDP 209
>pir||F75046 pyruvate synthase (EC 1.2.7.1) beta chain PAB1476 - Pyrococcus
abyssi (strain Orsay) >gi|5458780|emb|CAB50267.1|
(AJ248287) PYRUVATE SYNTHASE SUBUNIT PORB (EC 1.2.7.1)
(PYRUVATE OXIDOREDUCTASE BETA CHAIN) (POR) [Pyrococcus
abyssi]
Length = 334
Score = 85.8 bits (209), Expect = 5e-16
Identities = 83/308 (26%), Positives = 132/308 (41%), Gaps = 51/308 (16%)
Query: 23 ALCPGCGGGTVLN----AFANAIDQLKIDPRDLVVVSGIGCSAWIAS--PY--FLADTLH 74
A C GCG T L AF+ A+++ DP + GC +++ PY + +H
Sbjct: 22 AACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWVH 81
Query: 75 TTHGRAIAFATGV-----KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVN 129
A A A+G+ K G+ K ++ I GDG A IG L R ++ ++ +
Sbjct: 82 VAFENAAAAASGIEAAWKKKGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLMYD 140
Query: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNI----EHPLKIAETVAAAG-ASYVARWTTAHV 184
N Y TG Q + +TP+GA TTT+P + P K +AAA YVA + +
Sbjct: 141 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIGNP 200
Query: 185 YQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLR----------------- 227
+ ++ +K+A G + V+V CP G R +++ E+ R
Sbjct: 201 FDFVKKVKKAAKVDGPAFVQVHCTCPT--GWRTPLEKGIEIARLAIETGMWPLFEIENGD 258
Query: 228 -WFLKNSVPISKAKKMSE----EELEGKFVIGEFVKRE--------RPEFVSELNKLIDE 274
W +K P AK E +E K I E++K + RPE + EL I
Sbjct: 259 IWHIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIDELRNQIKA 318
Query: 275 VQEKFGLK 282
+ + G++
Sbjct: 319 MWKVLGVE 326
>pir||F71114 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3257093|dbj|BAA29776.1| (AP000003) 334aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 334
Score = 84.7 bits (206), Expect = 1e-15
Identities = 82/308 (26%), Positives = 132/308 (42%), Gaps = 51/308 (16%)
Query: 23 ALCPGCGGGTVLN----AFANAIDQLKIDPRDLVVVSGIGCSAWIAS--PY--FLADTLH 74
A C GCG L AF+ A+++ DP + GC +++ PY + +H
Sbjct: 22 AACAGCGCAIALKLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWIH 81
Query: 75 TTHGRAIAFATGV-----KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVN 129
A A A+GV K+G+ K ++ I GDG A IG L R ++ ++ +
Sbjct: 82 VAFENAAAAASGVEAAWKKLGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLMYD 140
Query: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNI----EHPLKIAETVAAA-GASYVARWTTAHV 184
N Y TG Q + +TP+GA TTT+P + P K +AAA Y A + +
Sbjct: 141 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHQIPYAATASIGNP 200
Query: 185 YQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLR----------------- 227
+ L++ +K+A G + ++V CP G R +++ E+ R
Sbjct: 201 FDLVKKVKKAAKVDGPAFIQVHCTCPT--GWRTPLEKGVEIARLAIETGMWPLFEIENGD 258
Query: 228 -WFLKNSVPISKAKKMSE----EELEGKFVIGEFVKRE--------RPEFVSELNKLIDE 274
W +K P AK E +E K I E++K + RPE + EL I
Sbjct: 259 IWNIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIEELRNQIKA 318
Query: 275 VQEKFGLK 282
+ + G++
Sbjct: 319 MWKVLGVE 326
>sp|O58417|PORB_PYRHO PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
Length = 331
Score = 84.7 bits (206), Expect = 1e-15
Identities = 82/308 (26%), Positives = 132/308 (42%), Gaps = 51/308 (16%)
Query: 23 ALCPGCGGGTVLN----AFANAIDQLKIDPRDLVVVSGIGCSAWIAS--PY--FLADTLH 74
A C GCG L AF+ A+++ DP + GC +++ PY + +H
Sbjct: 19 AACAGCGCAIALKLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWIH 78
Query: 75 TTHGRAIAFATGV-----KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVN 129
A A A+GV K+G+ K ++ I GDG A IG L R ++ ++ +
Sbjct: 79 VAFENAAAAASGVEAAWKKLGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLMYD 137
Query: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNI----EHPLKIAETVAAA-GASYVARWTTAHV 184
N Y TG Q + +TP+GA TTT+P + P K +AAA Y A + +
Sbjct: 138 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHQIPYAATASIGNP 197
Query: 185 YQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLR----------------- 227
+ L++ +K+A G + ++V CP G R +++ E+ R
Sbjct: 198 FDLVKKVKKAAKVDGPAFIQVHCTCPT--GWRTPLEKGVEIARLAIETGMWPLFEIENGD 255
Query: 228 -WFLKNSVPISKAKKMSE----EELEGKFVIGEFVKRE--------RPEFVSELNKLIDE 274
W +K P AK E +E K I E++K + RPE + EL I
Sbjct: 256 IWNIKIQPPGGGAKVYKEGGRVVRIEFKKPIEEYLKYQGRFKHLFKRPEAIEELRNQIKA 315
Query: 275 VQEKFGLK 282
+ + G++
Sbjct: 316 MWKVLGVE 323
>gi|11499292 pyruvate ferredoxin oxidoreductase, subunit beta (porB)
[Archaeoglobus fulgidus] >gi|7431599|pir||E69462
probable pyruvate synthase (EC 1.2.7.1) beta chain -
Archaeoglobus fulgidus >gi|2648852|gb|AAB89547.1|
(AE000986) pyruvate ferredoxin oxidoreductase, subunit
beta (porB) [Archaeoglobus fulgidus]
Length = 294
Score = 84.3 bits (205), Expect = 2e-15
Identities = 78/286 (27%), Positives = 120/286 (41%), Gaps = 36/286 (12%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGRA 80
CPGCG + N +D + V+ GC I+S Y + +H+ A
Sbjct: 11 CPGCGLPIAVKTVLNLLDG------KVFAVNSTGCLEIISSQYGKNAWNVPYIHSLFENA 64
Query: 81 IAFATGVKVGL------PDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYG 134
A A GV+ L + +VVV +GDG A IG L A RN DI I ++N Y
Sbjct: 65 AAVAAGVEAALRALKRKDEGHVVVFAGDGATADIGIGTLSGAFDRNHDILYICLDNEAYQ 124
Query: 135 MTGGQVAPTTPFGAITTTTPYRNIEHPLKIA------ETVAAAGASYVARWTTAHVYQLI 188
TG Q + TP G TTTTP + P K+ A G YVA + +V +
Sbjct: 125 NTGHQQSGLTPPGESTTTTPAGKV-LPGKVGRKKDMISIAVAHGIPYVASSSVGYVSDIR 183
Query: 189 ESIKRAITTKGFSLVEVISQCPVQFGRRN--RMKEPAEMLRWFLKNSVPISKAKKMSEEE 246
+K+A+ +G +++ S C +G +K + L V K S +
Sbjct: 184 RKVKKAVKFEGAKYIQIHSPCVTGWGIDGSIAIKVARLAVETGLYPLVEFEYGKLTSVRK 243
Query: 247 LEGKFVIGEFVKRER-----------PEFVSELNKLIDEVQEKFGL 281
++ + + E++K +R E + L + DE E++GL
Sbjct: 244 IKDRKPVEEYLKLQRRFRHLFTHEKGREMIETLQRFADENAERYGL 289
>pir||C70400 ferredoxin oxidoreductase beta subunit - Aquifex aeolicus
>gi|2983630|gb|AAC07198.1| (AE000727) ferredoxin
oxidoreductase beta subunit [Aquifex aeolicus]
Length = 289
Score = 83.9 bits (204), Expect = 2e-15
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 23/223 (10%)
Query: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAF 83
+C GC + F A+ +P D +V+ GC A +A ++ +G A
Sbjct: 50 MCAGCYMAYFIRVFYTALP----NPEDTIVIGTAGC-ARLALSQAAVPFIYGNYGDTNAV 104
Query: 84 ATGVKVGL----PDKY--VVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTG 137
A+G+K L PDK+ VVVI+GDG L IG +H+ R T I+V+N +YG TG
Sbjct: 105 ASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTG 164
Query: 138 GQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITT 197
GQ + +P G P + E AG YVAR + + ++ ++I+RAI
Sbjct: 165 GQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILA 224
Query: 198 K---GFSLVEVISQCPVQFG---------RRNRMKEPAEMLRW 228
G + + + C +++ R R K+ + W
Sbjct: 225 ARHFGPTFIHAYTSCNIEYSIPTREVLADARKREKQDFKFYEW 267
>sp|Q57714|PORB_METJA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2127891|pir||C64333 probable pyruvate synthase (EC
1.2.7.1) beta chain - Methanococcus jannaschii
>gi|1590994|gb|AAB98253.1| (U67482) pyruvate ferredoxin
oxidoreductase, subunit beta (porB) [Methanococcus
jannaschii]
Length = 298
Score = 83.5 bits (203), Expect = 3e-15
Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGRA 80
C GCG V LK+ +D ++ + GC + +PY + +HT A
Sbjct: 19 CAGCGAAIVARLL------LKVAGKDTIITNATGCLEVMTTPYPETSWRVPWIHTAFENA 72
Query: 81 IAFATGVKVGLP----------DKY--VVVISGDGDLASIGGNHLIHAARRNIDITVILV 128
A A+G++ + DK V+ I GDG A IG L A R DI I+
Sbjct: 73 AATASGIEAAVKALKRKRGKFADKKINVIAIGGDGGTADIGFQALSGAMERGHDILYIMY 132
Query: 129 NNFIYGMTGGQVAPTTPFGAITTTTP----YRNIEHPLK-IAETVAAAGASYVARWTTAH 183
+N Y TG Q + +TPF A TTT+P R + P K + +AA G YVA ++
Sbjct: 133 DNEAYMNTGIQRSSSTPFMAATTTSPAGSKIRGEDRPKKDMTMIMAAHGIPYVATACISY 192
Query: 184 VYQLIESIKRAITTKGFSLVEVISQCPVQFG 214
+ +K+A++ +G ++V+ C +G
Sbjct: 193 PEDFMRKVKKALSIEGPKFIQVLQPCTTGWG 223
>sp|Q51805|PORB_PYRFU PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|11252319|pir||T45089 pyruvate synthase (EC 1.2.7.1)
beta chain [imported] - Pyrococcus furiosus
>gi|1197364|emb|CAA59506.1| (X85250) pyruvate ferredoxin
oxidoreductase beta-2 [Pyrococcus furiosus]
Length = 331
Score = 81.1 bits (197), Expect = 1e-14
Identities = 83/308 (26%), Positives = 132/308 (41%), Gaps = 51/308 (16%)
Query: 23 ALCPGCGGGTVLN----AFANAIDQLKIDPRDLVVVSGIGCSAWIAS--PY--FLADTLH 74
A C GCG T L A + A+++ DP + GC +++ PY + A +H
Sbjct: 19 AACAGCGCATALRLATKALSEAMEEKYGDPNAFAIAHATGCMEVVSAVFPYTAWKAPWIH 78
Query: 75 TTHGRAIAFATGV-----KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVN 129
A A A+G+ K+G K ++ I GDG A IG L R ++ ++ +
Sbjct: 79 VAFENAAAVASGIEAAWKKLGRKGK-ILAIGGDGGTADIGLQALSGMLERWHNVLYLMYD 137
Query: 130 NFIYGMTGGQVAPTTPFGAITTTTPYRNI----EHPLKIAETVAAA-GASYVARWTTAHV 184
N Y TG Q + +TP+GA TTT+P + P K +AAA YVA + +
Sbjct: 138 NEAYMNTGIQRSSSTPYGAWTTTSPPGKYSVGEDKPKKWVALIAAAHQIPYVATASIGNP 197
Query: 185 YQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLR----------------- 227
+ IK+A G + V+V+ CP G R+ +++ E+ R
Sbjct: 198 LDFVRKIKKAGKIDGPAFVQVLCTCPT--GWRSPLEKGVEIARLAIETGIWPLFEIENGD 255
Query: 228 -WFLKNSVPISKAKKMSE----EELEGKFVIGEFVKRE--------RPEFVSELNKLIDE 274
W +K P AK E +E K I E++K + RPE + EL +
Sbjct: 256 IWNIKIQPPGGGAKVYKEGNRVVRIEFKKPIEEYLKLQGRFKHLFKRPEAIEELRNQVKA 315
Query: 275 VQEKFGLK 282
+ + G++
Sbjct: 316 MWKVLGVE 323
>sp|O27771|PORB_METTH PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7431598|pir||D69099 pyruvate synthase (EC 1.2.7.1)
beta chain - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622869|gb|AAB86208.1| (AE000929)
pyruvate oxidoreductase, beta subunit [Methanobacterium
thermoautotrophicum]
Length = 288
Score = 76.9 bits (186), Expect = 3e-13
Identities = 62/204 (30%), Positives = 92/204 (44%), Gaps = 20/204 (9%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGRA 80
C GCG + LK+ ++ V VS GC I +PY + +H A
Sbjct: 16 CAGCGATVGVRL------ALKVLGKNTVAVSSTGCLEVITTPYPETAWRIPWIHVAFENA 69
Query: 81 IAFATGVK-----VGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGM 135
A A+GV+ G D VV +GDG A IG L A R +I I +N Y
Sbjct: 70 AAVASGVERALKAKGRDDVNVVAFAGDGGTADIGLQALSGAMERGHNIIYICYDNEAYMN 129
Query: 136 TGGQVAPTTPFGAITTTTPYR----NIEHPLKIAETVAAA-GASYVARWTTAHVYQLIES 190
TG Q + +TP+GA TTT+P+ + P K + AA G YVA + ++ +E
Sbjct: 130 TGIQRSASTPYGASTTTSPHGKESFGEDRPKKNMPLIMAAHGVPYVATASISYPEDFMEK 189
Query: 191 IKRAITTKGFSLVEVISQCPVQFG 214
+++A T G + + + C +G
Sbjct: 190 VRKAKETDGPAYIHLHQPCTTGWG 213
>pir||D70403 ferredoxin oxidoreductase beta subunit - Aquifex aeolicus
>gi|2983645|gb|AAC07212.1| (AE000728) ferredoxin
oxidoreductase beta subunit [Aquifex aeolicus]
Length = 286
Score = 75.7 bits (183), Expect = 6e-13
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 23/237 (9%)
Query: 23 ALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIA 82
+LC GC AF + L P D V+V+ GC++ + P+ T+H G A
Sbjct: 50 SLCAGCPESA---AFRYILASLP-SPEDTVIVNSTGCTS-LVFPHIALHTVHPLFGNQNA 104
Query: 83 FATGVKVGL----PDKY--VVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMT 136
A+G+K L PDK VVVI+GDG IG + + + R IT I +N +Y T
Sbjct: 105 VASGIKRVLEWRFPDKPKDVVVIAGDGATIDIGLDCTLQSFFRQEKITTICFDNEVYANT 164
Query: 137 GGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAIT 196
GGQ + TP G P + + + +G YVAR T + ++ + +K+AI
Sbjct: 165 GGQDSGATPRGMEFKMAPGGKQWDKVPMWQLAIDSGCHYVARLTVSSPKKVEQVVKKAIY 224
Query: 197 TK---GFSLVEVISQCPVQFG---------RRNRMKEPAEMLRWFLKNSVPISKAKK 241
G + + + + C ++ G R R KE + + + + K KK
Sbjct: 225 VAREVGPTYIHLYTPCILEIGLNSDQGLWEMRQRDKERFKFFEYMTDEAKEVIKKKK 281
>dbj|BAA95606.1| (AB042412) pyruvate:ferredoxin oxidoreductase beta subunit
[Hydrogenobacter thermophilus]
Length = 286
Score = 75.3 bits (182), Expect = 8e-13
Identities = 57/201 (28%), Positives = 95/201 (46%), Gaps = 14/201 (6%)
Query: 23 ALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIA 82
+LC GC L ++ +P D ++V+ GC++ + P+ T+H+ G A
Sbjct: 50 SLCAGCPESMALRYILASLP----NPEDTIIVNSTGCTS-LVFPHIALHTVHSLFGNQNA 104
Query: 83 FATGVKVGL----PDKY--VVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMT 136
A+G+K L PDK VVV++GDG + IG + + + R IT I +N +Y T
Sbjct: 105 VASGIKRVLEWRFPDKVKDVVVLAGDGAIVDIGLDCTLQSFFRQEKITTICFDNEVYANT 164
Query: 137 GGQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAIT 196
GGQ + T G + P + + + +G YVAR T + ++ IK+AI
Sbjct: 165 GGQESGMTVKGHVFKMAPKGKQWDKVPMWQIAIDSGCHYVARLTVSSPKRVESVIKKAIY 224
Query: 197 TK---GFSLVEVISQCPVQFG 214
G + V + + C ++ G
Sbjct: 225 VAREVGPTYVHLYTPCILEIG 245
>pir||G75085 indolepyruvate ferredoxin oxidoreductase, chain alpha (iora-2)
PAB0718 - Pyrococcus abyssi (strain Orsay)
>gi|5458500|emb|CAB49988.1| (AJ248286) indolepyruvate
ferredoxin oxidoreductase, subunit alpha (iorA-2)
[Pyrococcus abyssi]
Length = 613
Score = 74.9 bits (181), Expect = 1e-12
Identities = 60/202 (29%), Positives = 87/202 (42%), Gaps = 7/202 (3%)
Query: 21 PTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRA 80
P +CPGC A +A+ +L D+ + IGC A P A G +
Sbjct: 358 PPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGAS 417
Query: 81 IAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQV 140
I+ A G V + K V I GD G LI A +++D+ VI+++N MTG Q
Sbjct: 418 ISLANGQSVVMNKKIVATI-GDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQP 476
Query: 141 APTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGF 200
P T G T +R I+ I V A G YV + E+IK A+ KG
Sbjct: 477 HPGT--GGSETGRKFREID----IEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGP 530
Query: 201 SLVEVISQCPVQFGRRNRMKEP 222
+++ +C + RR +EP
Sbjct: 531 AVIIAKRECVIPVIRRGETREP 552
>gb|AAF91265.1|AF230199_7 (AF230199) pyruvate oxidoreductase beta subunit [Methanococcus
maripaludis]
Length = 298
Score = 74.5 bits (180), Expect = 1e-12
Identities = 77/289 (26%), Positives = 126/289 (42%), Gaps = 41/289 (14%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGRA 80
C GCG V LK ++ +V + GC + +PY + +H A
Sbjct: 19 CAGCGAAIVARL------ALKAAGKNTIVANATGCLEVMTTPYPETAWRVPWIHVAFENA 72
Query: 81 IAFATGV------------KVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILV 128
A A+GV K G V+ GDG A IG L A R D+ I+
Sbjct: 73 AAVASGVEGAVAALKRKRGKYGEEKVNVIAFGGDGGTADIGFQALSGAMERGHDMVYIMY 132
Query: 129 NNFIYGMTGGQVAPTTPFGAITTTTP----YRNIEHPLK-IAETVAAAGASYVARWTTAH 183
+N Y TG Q + +TP A TTT+P R P K + +AA G YVA + ++
Sbjct: 133 DNEAYMNTGVQRSGSTPLMASTTTSPAGSLIRGETMPKKNMPMIMAAHGIPYVATASISY 192
Query: 184 VYQLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSV-PISKAK-- 240
+ +K+A G + ++V+ C +G + E+ R ++ V P+ + +
Sbjct: 193 PEDFMNKVKKACEINGPAFIQVMQPCTTGWG--YPADKTIELGRLAVETGVWPLFEIENG 250
Query: 241 --KMSEEELEGKFVIGEFVKRER------PEFVSELNKLIDEVQEKFGL 281
K++ + L+ K I E++K ++ PE +S + K ID +++GL
Sbjct: 251 EFKLNYKPLKRK-PIEEYLKVQKRYRHLNPEEISVIQKTIDMKCDEYGL 298
>pir||D71055 probable indolepyruvate ferredoxin oxidoreductase alpha subunit -
Pyrococcus horikoshii >gi|3257555|dbj|BAA30238.1|
(AP000005) 618aa long hypothetical indolepyruvate
ferredoxin oxidoreductase alpha subunit [Pyrococcus
horikoshii]
Length = 618
Score = 73.7 bits (178), Expect = 2e-12
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 7/202 (3%)
Query: 21 PTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRA 80
P +CPGC A +A+ +L D+ + IGC A P A G +
Sbjct: 363 PPVMCPGCPHRGSYRALLDALRELGYGKFDIPIHGDIGCYALSLLPPLEAIWTEFVMGAS 422
Query: 81 IAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQV 140
I+ A G V + K V I GD G LI A +++D+ VI+++N MTG Q
Sbjct: 423 ISLANGQSVVMGKKIVATI-GDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQP 481
Query: 141 APTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGF 200
P T G T +R I+ I V G YV + E+IK A+ KG
Sbjct: 482 HPGT--GGSETGRKFREID----IEALVKGIGVKYVKTVDPYDLKATKEAIKEAMKVKGP 535
Query: 201 SLVEVISQCPVQFGRRNRMKEP 222
+++ +C + RR +EP
Sbjct: 536 AVIIARRECVIPVIRRGETREP 557
>gb|AAK41453.1| Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase
beta chain) (porB-1) [Sulfolobus solfataricus]
Length = 300
Score = 72.6 bits (175), Expect = 5e-12
Identities = 61/199 (30%), Positives = 87/199 (43%), Gaps = 19/199 (9%)
Query: 23 ALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHG 78
A CPGC L+ L++ V+V C+ I +H+ G
Sbjct: 21 AACPGCPIPKELDV------ALEVLGNKTVLVVPASCTTIIMGDTNGMPSTVPVVHSAFG 74
Query: 79 RAIAFATGVKVGLP-----DKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIY 133
A A +G+ L D V V +GDG IG + AA RN DI I +N Y
Sbjct: 75 AAAAIGSGIVRSLRMRGDNDAIVAVWAGDGSTGDIGFAAVSGAAERNEDILYICYDNEAY 134
Query: 134 GMTGGQVAPTTPFGAITTTTP--YRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESI 191
TG Q + TP GA TTTTP R ++ PL +A YVA + A++Y +
Sbjct: 135 MNTGIQRSGLTPKGAWTTTTPEGKREVKKPLPF--IIAEHKVPYVATASIAYIYDYEAKM 192
Query: 192 KRAITTKGFSLVEVISQCP 210
++A +GF + ++S CP
Sbjct: 193 RKAKQIRGFRYIHLLSPCP 211
>pir||G64658 probable pyruvate synthase (EC 1.2.7.1) beta chain - Helicobacter
pylori (strain 26695) >gi|2314262|gb|AAD08155.1|
(AE000617) pyruvate ferredoxin oxidoreductase, beta
subunit [Helicobacter pylori 26695]
Length = 314
Score = 72.6 bits (175), Expect = 5e-12
Identities = 73/302 (24%), Positives = 121/302 (39%), Gaps = 55/302 (18%)
Query: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGR 79
LCPGCG G ++ NA+D +V+ + GC ++ Y + +H
Sbjct: 24 LCPGCGHGIIVREVLNAVDG------PIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFEN 77
Query: 80 AIAFATGVKV------------GLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVIL 127
+GV+ G K+V GDG IG + R D+T I
Sbjct: 78 GSTAISGVEAMYKALTNKGRYQGQKPKFVA-FGGDGASYDIGLQFISGCMERGHDMTYIC 136
Query: 128 VNNFIYGMTGGQVAPTTPFGAITTTTPYRNI-----EHPLKIAETVAAAGASYVARWTTA 182
++N Y TGGQ + +TP GA T+TTP ++ E I +A+ G YVA+ +
Sbjct: 137 LDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPN 196
Query: 183 HVYQLIESIKRAITTKGFSLVEVISQCPVQFG-RRNRMKEPAEM---------------- 225
+ + IK A+ T+G + +S C ++ N+ E A+M
Sbjct: 197 KWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGR 256
Query: 226 ---LRWFLKNSVPISKAKKMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLK 282
+ + +N +P+ + L + K+E + EL K ++E E +
Sbjct: 257 ELKITYRPRNIIPV-------RDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRR 309
Query: 283 EE 284
EE
Sbjct: 310 EE 311
>gb|AAC02294.1| (AF013980) pyruvate:ferredoxin oxidoreductase beta subunit
[Helicobacter pylori]
Length = 314
Score = 72.6 bits (175), Expect = 5e-12
Identities = 73/302 (24%), Positives = 121/302 (39%), Gaps = 55/302 (18%)
Query: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGR 79
LCPGCG G ++ NA+D +V+ + GC ++ Y + +H
Sbjct: 24 LCPGCGHGIIVREVLNAVDG------PIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFEN 77
Query: 80 AIAFATGVKV------------GLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVIL 127
+GV+ G K+V GDG IG + R D+T I
Sbjct: 78 GSTAISGVEAMYKALVNKGRYQGQKPKFVA-FGGDGASYDIGLQFISGCMERGHDMTYIC 136
Query: 128 VNNFIYGMTGGQVAPTTPFGAITTTTPYRNI-----EHPLKIAETVAAAGASYVARWTTA 182
++N Y TGGQ + +TP GA T+TTP ++ E I +A+ G YVA+ +
Sbjct: 137 LDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPN 196
Query: 183 HVYQLIESIKRAITTKGFSLVEVISQCPVQFG-RRNRMKEPAEM---------------- 225
+ + IK A+ T+G + +S C ++ N+ E A+M
Sbjct: 197 KWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGR 256
Query: 226 ---LRWFLKNSVPISKAKKMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLK 282
+ + +N +P+ + L + K+E + EL K ++E E +
Sbjct: 257 ELKITYRPRNIIPV-------RDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRR 309
Query: 283 EE 284
EE
Sbjct: 310 EE 311
>gb|AAC38207.1| (AF021092) PorB subunit of pyruvate:flavodoxin oxidoreductase
[Helicobacter pylori]
Length = 328
Score = 72.6 bits (175), Expect = 5e-12
Identities = 73/302 (24%), Positives = 121/302 (39%), Gaps = 55/302 (18%)
Query: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGR 79
LCPGCG G ++ NA+D +V+ + GC ++ Y + +H
Sbjct: 24 LCPGCGHGIIVREVLNAVDG------PIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFEN 77
Query: 80 AIAFATGVKV------------GLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVIL 127
+GV+ G K+V GDG IG + R D+T I
Sbjct: 78 GSTAISGVEAMYKALTNKGRYQGQKPKFVA-FGGDGASYDIGLQFISGCMERGHDMTYIC 136
Query: 128 VNNFIYGMTGGQVAPTTPFGAITTTTPYRNI-----EHPLKIAETVAAAGASYVARWTTA 182
++N Y TGGQ + +TP GA T+TTP ++ E I +A+ G YVA+ +
Sbjct: 137 LDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPN 196
Query: 183 HVYQLIESIKRAITTKGFSLVEVISQCPVQFG-RRNRMKEPAEM---------------- 225
+ + IK A+ T+G + +S C ++ N+ E A+M
Sbjct: 197 KWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGR 256
Query: 226 ---LRWFLKNSVPISKAKKMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLK 282
+ + +N +P+ + L + K+E + EL K ++E E +
Sbjct: 257 ELKITYRPRNIIPV-------RDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRR 309
Query: 283 EE 284
EE
Sbjct: 310 EE 311
>pir||A71858 pyruvate ferrodoxin oxidoreductase - Helicobacter pylori (strain
J99) >gi|4155627|gb|AAD06617.1| (AE001531) Pyruvate
ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 314
Score = 72.6 bits (175), Expect = 5e-12
Identities = 73/302 (24%), Positives = 121/302 (39%), Gaps = 55/302 (18%)
Query: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGR 79
LCPGCG G ++ NA+D +V+ + GC ++ Y + +H
Sbjct: 24 LCPGCGHGIIVREVLNAVDG------PIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFEN 77
Query: 80 AIAFATGVKV------------GLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVIL 127
+GV+ G K+V GDG IG + R D+T I
Sbjct: 78 GSTAISGVEAMYKALVNKGRYQGQRPKFVA-FGGDGASYDIGFQFISGCMERGHDMTYIC 136
Query: 128 VNNFIYGMTGGQVAPTTPFGAITTTTPYRNI-----EHPLKIAETVAAAGASYVARWTTA 182
++N Y TGGQ + +TP GA T+TTP ++ E I +A+ G YVA+ +
Sbjct: 137 LDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPN 196
Query: 183 HVYQLIESIKRAITTKGFSLVEVISQCPVQFG-RRNRMKEPAEM---------------- 225
+ + IK A+ T+G + +S C ++ N+ E A+M
Sbjct: 197 KWKDMNKKIKTALDTEGPCFINALSPCTTEWKFNSNKTIELADMAVDSLMFPLFEVFNGR 256
Query: 226 ---LRWFLKNSVPISKAKKMSEEELEGKFVIGEFVKRERPEFVSELNKLIDEVQEKFGLK 282
+ + +N +P+ + L + K+E + EL K ++E E +
Sbjct: 257 ELKITYRPRNIIPV-------RDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRR 309
Query: 283 EE 284
EE
Sbjct: 310 EE 311
>pir||B71114 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3257089|dbj|BAA29772.1| (AP000003) 314aa
long hypothetical ferredoxin oxidoreductase beta subunit
[Pyrococcus horikoshii]
Length = 314
Score = 71.8 bits (173), Expect = 9e-12
Identities = 76/266 (28%), Positives = 110/266 (40%), Gaps = 33/266 (12%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGRA 80
C GCG L LK R +VV CS IA P+ A+ HT
Sbjct: 29 CQGCGASLGLRYV------LKAYGRKTIVVIPACCSTIIAGPWPYSALNANLFHTAFATT 82
Query: 81 IAFATGVKVGLP---------DKYVVV-ISGDGDLASIGGNHLIHAARRNIDITVILVNN 130
A +G++ GL D +VV +GDG A IG L R D I+ +N
Sbjct: 83 GAVISGIEAGLKALGYKVKGEDGIMVVGWAGDGGTADIGLQALSGFIERGHDAVYIMYDN 142
Query: 131 FIYGMTGGQVAPTTPFGAITTTTP--YRNI---EHPLKIAETVAAAGASYVARWTTAHVY 185
Y TG Q + +TP+GA TT TP R++ H K+ + V A Y A + A+
Sbjct: 143 EAYMNTGIQRSSSTPYGAWTTNTPGGKRHLLEKRHKKKVIDIVIAHRIPYAATASVAYPE 202
Query: 186 QLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEE 245
I +K+A G S +++ + CP G R + E+ R + + A E
Sbjct: 203 DFIRKLKKAQKIPGPSFIQLFAPCPT--GWRAPTDKSIEIAR------LAVQTAYFPLFE 254
Query: 246 ELEGKFVIGEFVKRERPEFVSELNKL 271
GK+ I ++ P+ + E KL
Sbjct: 255 YENGKYKINMPNPKKEPKPIEEFLKL 280
>sp|O58414|VORB_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE BETA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE BETA SUBUNIT)
Length = 311
Score = 71.8 bits (173), Expect = 9e-12
Identities = 76/266 (28%), Positives = 110/266 (40%), Gaps = 33/266 (12%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPY----FLADTLHTTHGRA 80
C GCG L LK R +VV CS IA P+ A+ HT
Sbjct: 26 CQGCGASLGLRYV------LKAYGRKTIVVIPACCSTIIAGPWPYSALNANLFHTAFATT 79
Query: 81 IAFATGVKVGLP---------DKYVVV-ISGDGDLASIGGNHLIHAARRNIDITVILVNN 130
A +G++ GL D +VV +GDG A IG L R D I+ +N
Sbjct: 80 GAVISGIEAGLKALGYKVKGEDGIMVVGWAGDGGTADIGLQALSGFIERGHDAVYIMYDN 139
Query: 131 FIYGMTGGQVAPTTPFGAITTTTP--YRNI---EHPLKIAETVAAAGASYVARWTTAHVY 185
Y TG Q + +TP+GA TT TP R++ H K+ + V A Y A + A+
Sbjct: 140 EAYMNTGIQRSSSTPYGAWTTNTPGGKRHLLEKRHKKKVIDIVIAHRIPYAATASVAYPE 199
Query: 186 QLIESIKRAITTKGFSLVEVISQCPVQFGRRNRMKEPAEMLRWFLKNSVPISKAKKMSEE 245
I +K+A G S +++ + CP G R + E+ R + + A E
Sbjct: 200 DFIRKLKKAQKIPGPSFIQLFAPCPT--GWRAPTDKSIEIAR------LAVQTAYFPLFE 251
Query: 246 ELEGKFVIGEFVKRERPEFVSELNKL 271
GK+ I ++ P+ + E KL
Sbjct: 252 YENGKYKINMPNPKKEPKPIEEFLKL 277
>sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
>gi|7450335|pir||G69114 indolepyruvate oxidoreductase,
alpha subunit - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622988|gb|AAB86318.1| (AE000938)
indolepyruvate oxidoreductase, alpha subunit
[Methanobacterium thermoautotrophicum]
Length = 618
Score = 71.0 bits (171), Expect = 1e-11
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 11/191 (5%)
Query: 21 PTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGC-SAWIASPYFLADTLHTTHGR 79
P +LCPGC V A A D+L++ +++ + IGC + I PY AD L + G
Sbjct: 368 PPSLCPGCPHRAVYYAVRRAADELELSGDEIIFPTDIGCYTLGIEPPYSAADYL-LSMGS 426
Query: 80 AIAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQ 139
+I + G + V I GD G LI+A +++++N MTGGQ
Sbjct: 427 SIGTSCGFSAATTQRIVSFI-GDSTFFHAGIPPLINAVHNKQRFVLVVLDNRTTAMTGGQ 485
Query: 140 VAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKG 199
P P + P +IE E V A+G +V ++ + E++KRA+ +
Sbjct: 486 PHPGLPVDGMGDEAPEISIE------EIVRASGVEFVETVNPMNIKRTSETVKRALEHE- 538
Query: 200 FSLVEVISQCP 210
S+ VIS+ P
Sbjct: 539 -SVAVVISKYP 548
>emb|CAC11768.1| (AL445064) probable 2-ketovalerate ferredoxin oxidoreductase beta-2
chain [Thermoplasma acidophilum]
Length = 300
Score = 69.9 bits (168), Expect = 3e-11
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 25 CPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWI----ASPYFLADT--LHTTHG 78
C GCG + A+ + V + S W A P+ D ++T
Sbjct: 18 CHGCGATLAMRYVLKALGEK--------TVVSVPASCWAVIPGAMPFRTLDVPMVYTPFA 69
Query: 79 RAIAFATGVKVGLP-----DKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIY 133
A +G++ GL D VV +GDG A IG L A R ++ I+ +N Y
Sbjct: 70 ATGASISGLREGLDIQGKSDYNVVGFAGDGGTADIGLQGLSGAMERGHNVFYIMYDNEGY 129
Query: 134 GMTGGQVAPTTPFGAITTTTPY---RNIEHPLK--IAETVAAAGASYVARWTTAHVYQLI 188
TG Q + +TP+GA TTTTP R+ + K +A+ + A YVA T A+ LI
Sbjct: 130 MNTGVQRSGSTPYGARTTTTPVGKERDFKKENKKIVADMMIAQNVPYVATATVAYPEDLI 189
Query: 189 ESIKRAITTKGFSLVEVISQCP 210
+ I+ A G +++++ CP
Sbjct: 190 KKIEHAKAVHGPKFIQILAPCP 211
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.137 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109763318
Number of Sequences: 2977
Number of extensions: 4685895
Number of successful extensions: 12781
Number of sequences better than 1.0e-10: 53
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 12679
Number of HSP's gapped (non-prelim): 55
length of query: 284
length of database: 189,106,746
effective HSP length: 55
effective length of query: 229
effective length of database: 156,189,961
effective search space: 35767501069
effective search space used: 35767501069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)