BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0345 (korG-1) DE:2-ketoglutarate ferredoxin oxidoreductase,
subunit gamma (korG-1)
(170 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75168 2-ketoglutarate ferredoxin oxidoreductase, chain gam... 329 1e-89
pir||G71046 probable ferredoxin oxidoreductase gamma subunit - P... 319 1e-86
pir||H75168 2-ketoglutarate ferredoxin oxidoreductase, chain gam... 141 4e-33
pir||D71046 probable ferredoxin oxidoreductase gamma subunit - P... 140 1e-32
sp|Q57956|KORC_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KET... 139 2e-32
sp|O27114|KORC_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KET... 135 3e-31
gi|11498082 2-ketoglutarate ferredoxin oxidoreductase, subunit g... 122 2e-27
pir||A71920 chain of 2-oxoglutarate oxidoreductase - Helicobacte... 96 2e-19
pir||G64593 probable 2-oxoglutarate synthase (EC 1.2.7.3) gamma ... 93 2e-18
pir||D72380 hypothetical protein TM0406 - Thermotoga maritima (s... 90 1e-17
pir||B81400 2-oxoglutarate synthase (EC 1.2.7.3) gamma chain Cj0... 90 1e-17
gb|AAC38213.1| (AF021094) OorC subunit of 2-oxoglutarate:accepto... 85 4e-16
sp|O58411|PORC_PYRHO PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES CO... 72 3e-12
pir||D75047 keto-valine-ferredoxin oxidoreductase gamma chain PA... 72 4e-12
sp|Q51799|PORC_PYRFU PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES CO... 69 4e-11
sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 68 5e-11
>pir||E75168 2-ketoglutarate ferredoxin oxidoreductase, chain gamma (korg-1)
PAB0345 - Pyrococcus abyssi (strain Orsay)
>gi|5457938|emb|CAB49428.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG-1)
[Pyrococcus abyssi]
Length = 170
Score = 329 bits (835), Expect = 1e-89
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL
Sbjct: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDREFVGAPFTRIAEETTGLALT 120
MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDREFVGAPFTRIAEETTGLALT
Sbjct: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDREFVGAPFTRIAEETTGLALT 120
Query: 121 VNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGRE 170
VNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGRE
Sbjct: 121 VNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGRE 170
>pir||G71046 probable ferredoxin oxidoreductase gamma subunit - Pyrococcus
horikoshii >gi|3258092|dbj|BAA30775.1| (AP000006) 170aa
long hypothetical ferredoxin oxidoreductase gamma
subunit [Pyrococcus horikoshii]
Length = 170
Score = 319 bits (808), Expect = 1e-86
Identities = 160/170 (94%), Positives = 170/170 (99%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
MQIRFAG+GGQGVVLAGVILGEAAAIEGL+VLQTQDYSSASRGGHSIADVIISDGEIYDL
Sbjct: 1 MQIRFAGIGGQGVVLAGVILGEAAAIEGLRVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDREFVGAPFTRIAEETTGLALT 120
MVT+ADVLVALHQLGYETAKSKLKP+GLLIIDTDLVKPDR+FVGAPFTRIAEETTGLALT
Sbjct: 61 MVTHADVLVALHQLGYETAKSKLKPDGLLIIDTDLVKPDRDFVGAPFTRIAEETTGLALT 120
Query: 121 VNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGRE 170
VNMVALGYLIAKTG+VKPESVEEAIRRRVP+GTEEIN++AFRKGLEVG+E
Sbjct: 121 VNMVALGYLIAKTGIVKPESVEEAIRRRVPKGTEEINLRAFRKGLEVGKE 170
>pir||H75168 2-ketoglutarate ferredoxin oxidoreductase, chain gamma (korg-2)
PAB0348 - Pyrococcus abyssi (strain Orsay)
>gi|5457941|emb|CAB49431.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG-2)
[Pyrococcus abyssi]
Length = 185
Score = 141 bits (352), Expect = 4e-33
Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 8/174 (4%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAI-EGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
+I G GGQGV+LA VILG AAA+ EG +QTQ Y SRGG S A+V+ISD I
Sbjct: 7 EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP 66
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLV-------KPDREFVGAPFTRIAEE 113
V D + L Q Y+ +K GL+I++ DLV + D+ P T +AEE
Sbjct: 67 KVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEE 126
Query: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEV 167
TTGL+LT+N++ LG + T +VK ES+E+A+ VP+GTE+IN+KA KG E+
Sbjct: 127 TTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
>pir||D71046 probable ferredoxin oxidoreductase gamma subunit - Pyrococcus
horikoshii >gi|3258089|dbj|BAA30772.1| (AP000006) 185aa
long hypothetical ferredoxin oxidoreductase gamma
subunit [Pyrococcus horikoshii]
Length = 185
Score = 140 bits (349), Expect = 1e-32
Identities = 81/177 (45%), Positives = 108/177 (60%), Gaps = 8/177 (4%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAI-EGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
+I G GGQGV+LA VILG AAA+ EG +QTQ Y SRGG S A+V+ISD I
Sbjct: 7 EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP 66
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLV-------KPDREFVGAPFTRIAEE 113
V D + L Q Y+ +K GL+II+ DLV + R+ P T IAEE
Sbjct: 67 KVIEPDYAILLSQQAYDKYLPLVKNGGLVIIEEDLVPNRNEELEKGRKVYAYPLTEIAEE 126
Query: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGRE 170
TTGL+LT+N++ LG + T +VK ES+E+A+ VP+GTE+IN+KA KG E+ +
Sbjct: 127 TTGLSLTMNILTLGLFVGLTKIVKKESIEKAVLDAVPKGTEQINLKALYKGFELAEK 183
>sp|Q57956|KORC_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT)
>gi|2127896|pir||H64366 probable 2-oxoglutarate synthase
(EC 1.2.7.3) gamma chain - Methanococcus jannaschii
>gi|1591240|gb|AAB98530.1| (U67503) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG)
[Methanococcus jannaschii]
Length = 187
Score = 139 bits (347), Expect = 2e-32
Identities = 79/176 (44%), Positives = 107/176 (59%), Gaps = 7/176 (3%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAI-EGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
+IR +G GGQG++LAGVILG AAA+ + + +QTQ Y +RGG S ++V+ISD I
Sbjct: 11 EIRLSGFGGQGIILAGVILGRAAALYDNKEAVQTQSYGPEARGGASKSEVVISDEPIDFP 70
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDR------EFVGAPFTRIAEET 114
V D+LV L Q Y+ K +K G++++D DLV D+ PFTRIA E
Sbjct: 71 KVIKPDILVCLSQQAYDKYKDDIKEGGVVLVDEDLVSTDKMPEVDVTMYKIPFTRIASEE 130
Query: 115 TGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGRE 170
L + N+V LG L T +V ES+E+AI VP+GTEE N+ AF KG EV +E
Sbjct: 131 IKLPIVANIVMLGALTRLTNIVSKESMEKAILDSVPKGTEEKNLLAFSKGYEVAKE 186
>sp|O27114|KORC_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT)
>gi|7448903|pir||B69005 probable 2-oxoglutarate synthase
(EC 1.2.7.3) gamma chain - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622138|gb|AAB85531.1| (AE000875) 2-oxoglutarate
oxidoreductase, gamma subunit [Methanobacterium
thermoautotrophicum]
Length = 189
Score = 135 bits (336), Expect = 3e-31
Identities = 78/177 (44%), Positives = 107/177 (60%), Gaps = 11/177 (6%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAI-EGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
+IR AG GGQGV+LAG++LG+AA++ +GL +QTQ Y +RGG S A+V+ISD EI
Sbjct: 7 EIRIAGFGGQGVILAGIVLGKAASLYDGLYAVQTQSYGPEARGGASRAEVVISDHEIDYP 66
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKP----------DREFVGAPFTRI 110
V + D+LVA+ T LK G LI+D D+V + ++ AP TR
Sbjct: 67 KVQSPDILVAMSHQALLTYMDDLKRGGALIVDPDMVVEAEIEDFIRAREVKYFRAPATRT 126
Query: 111 AEETTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEV 167
AEE G+ + NMV +G L TG+V + EEAI+ VP GTEE N+ AF+ G E+
Sbjct: 127 AEERVGITIVANMVMIGALTEATGIVSVRAAEEAIKDSVPPGTEEKNLMAFQAGREL 183
>gi|11498082 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG)
[Archaeoglobus fulgidus]
>gi|6685586|sp|O29779|KORC_ARCFU 2-OXOGLUTARATE SYNTHASE
SUBUNIT KORC (2-KETOGLUTARATE OXIDOREDUCTASE GAMMA
CHAIN) (KOR) (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE
GAMMA SUBUNIT) >gi|7430379|pir||G69308 probable
2-oxoglutarate synthase (EC 1.2.7.3) gamma chain -
Archaeoglobus fulgidus >gi|2650158|gb|AAB90767.1|
(AE001072) 2-ketoglutarate ferredoxin oxidoreductase,
subunit gamma (korG) [Archaeoglobus fulgidus]
Length = 187
Score = 122 bits (304), Expect = 2e-27
Identities = 73/169 (43%), Positives = 100/169 (58%), Gaps = 4/169 (2%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
+ IR AG GGQGV+ AG++L EA A+EG V+QTQ Y +RGG S AD+I+SD EI
Sbjct: 5 VNIRIAGTGGQGVIKAGLVLAEAFALEGKNVVQTQSYGPEARGGASRADIIVSDDEIDFP 64
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDREFVGAPFTRIAEETTGLALT 120
+ D L+ LH Y ++ E +I D+ LV R +G PFT + G L
Sbjct: 65 GLRRVDYLLVLHDSAYRKYYPQVDGETHVIYDSSLVNA-RRGLGFPFTETSIREFGTPLF 123
Query: 121 VNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEVGR 169
NM+A+G L A G ++PE VE I++R+ + E N+KAFR G E+GR
Sbjct: 124 ANMIAIGALTAMLG-LQPEKVEVVIQKRMRKAEE--NVKAFRIGFEMGR 169
>pir||A71920 chain of 2-oxoglutarate oxidoreductase - Helicobacter pylori
(strain J99) >gi|4155077|gb|AAD06112.1| (AE001486)
SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter
pylori J99]
Length = 184
Score = 96.0 bits (235), Expect = 2e-19
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDLM 61
Q+RF GVGGQGV+LAG IL EA + G +T Y+S RGG + D+++ EI
Sbjct: 4 QLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDKDEIIFPY 63
Query: 62 VTNA--DVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDRE------FVGAPFTRIAEE 113
D ++++ Q+ Y KS +K G+++ID +LV P +E P IA++
Sbjct: 64 AKEGEIDFMLSVAQISYNQFKSDIKKGGIVVIDPNLVTPTKEDEEKYQLYKIPIISIAKD 123
Query: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKG 164
G +T ++VAL + T V+ V + + ++VP E N KAF G
Sbjct: 124 EVGNIITQSVVALAITVELTKCVEENIVLDTMLKKVPAKVAETNKKAFEIG 174
>pir||G64593 probable 2-oxoglutarate synthase (EC 1.2.7.3) gamma chain -
Helicobacter pylori (strain 26695)
>gi|2313709|gb|AAD07656.1| (AE000572) ferredoxin
oxidoreductase, gamma subunit [Helicobacter pylori
26695]
Length = 186
Score = 93.2 bits (228), Expect = 2e-18
Identities = 58/171 (33%), Positives = 90/171 (51%), Gaps = 8/171 (4%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDLM 61
Q+RF GVGGQGV+LAG IL EA + G +T Y+S RGG + D+++ EI
Sbjct: 4 QLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDRDEIIFPY 63
Query: 62 VTNA--DVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDRE------FVGAPFTRIAEE 113
D ++++ Q+ Y KS +K G+++ID +LV P +E P IA++
Sbjct: 64 AKEGEIDFMLSVAQISYNQFKSDIKQGGIVVIDPNLVTPTKEDEEKYQIYKIPIISIAKD 123
Query: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKG 164
G +T ++VAL + T V+ V + + ++VP + N KAF G
Sbjct: 124 EVGNIITQSVVALAITVELTKCVEEIIVLDTMLKKVPAKVADTNKKAFEIG 174
>pir||D72380 hypothetical protein TM0406 - Thermotoga maritima (strain MSB8)
>gi|4980911|gb|AAD35491.1|AE001720_5 (AE001720)
keto/oxoacid ferredoxin oxidoreductase, gamma subunit,
putative [Thermotoga maritima]
Length = 200
Score = 90.5 bits (221), Expect = 1e-17
Identities = 59/172 (34%), Positives = 88/172 (50%), Gaps = 8/172 (4%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
+ IR AG+ GQG +LAG+IL +A EG V+QTQ YS+ RG S DV+ D I
Sbjct: 5 VSIRIAGISGQGNILAGLILAKALVYEGKWVVQTQSYSAQVRGDVSYCDVLYDDSPIDYP 64
Query: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLVK--PD------REFVGAPFTRIAE 112
D++ LHQ + +K G++I+D VK PD R+ + P T A
Sbjct: 65 ESEYFDIVCILHQKAMDELYKSVKVNGVVILDQTFVKNVPDFVKRITRKILFVPATERAI 124
Query: 113 ETTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKG 164
A+ N++ +G L +VK +S++ A++ V R +IN+KA G
Sbjct: 125 SEFKTAMVSNVIMVGVLAKVCNIVKLDSLKRALKDHVRRPLWDINLKALEFG 176
>pir||B81400 2-oxoglutarate synthase (EC 1.2.7.3) gamma chain Cj0538 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968006|emb|CAB75174.1| (AL139075) OORC subunit of
2-oxoglutarate:acceptor oxidoreductase [Campylobacter
jejuni]
Length = 185
Score = 90.1 bits (220), Expect = 1e-17
Identities = 55/173 (31%), Positives = 89/173 (50%), Gaps = 8/173 (4%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDLM 61
Q+RF G GGQGV+ AG IL EAA EG + + Y+S RGG + D+II D EI
Sbjct: 4 QLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPY 63
Query: 62 VTNADV--LVALHQLGYETAKSKLKPEGLLIIDTDLVKPDRE------FVGAPFTRIAEE 113
+V +++ GY+ + +K G+++++ +LV P+ E P IA++
Sbjct: 64 AVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKD 123
Query: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLE 166
G T ++VAL + + + ++E + VP T + N KAF G++
Sbjct: 124 EVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVK 176
>gb|AAC38213.1| (AF021094) OorC subunit of 2-oxoglutarate:acceptor oxidoreductase
[Helicobacter pylori]
Length = 184
Score = 85.0 bits (207), Expect = 4e-16
Identities = 56/171 (32%), Positives = 86/171 (49%), Gaps = 8/171 (4%)
Query: 2 QIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDLM 61
Q+RF GVGGQGV+LAG IL EA G +T Y+S RGG + D+ + EI
Sbjct: 4 QLRFTGVGGQGVLLAGEILAEAKIASGGYGTKTSTYTSQVRGGPTKVDLSLDRNEIIFPY 63
Query: 62 VTNA--DVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPDRE------FVGAPFTRIAEE 113
D ++++ Q+ Y KS +K G++++D +LV P +E P IA++
Sbjct: 64 GKEGEIDFMLSVAQISYNQFKSDIKQGGIVVMDPNLVTPTKEDEEKYQLYKIPIISIAKD 123
Query: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKG 164
G +T ++VAL T V+ + + ++VP + N KAF G
Sbjct: 124 EVGNIITQSVVALAITAEFTKCVEENIALDTMLKKVPAKVADTNKKAFEIG 174
>sp|O58411|PORC_PYRHO PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES COMMON GAMMA SUBUNIT
[INCLUDES: PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE
OXIDOREDUCTASE GAMMA CHAIN) (POR) (PYRUVIC-FERREDOXIN
OXIDOREDUCTASE GAMMA SUBUNIT); KETOISOVALERATE
OXIDOREDUCTASE SUBUNIT VORC (VOR) (2->
>gi|7448910|pir||G71113 probable pyruvate synthase (EC
1.2.7.1) gamma chain - Pyrococcus horikoshii
>gi|3257086|dbj|BAA29769.1| (AP000003) 185aa long
hypothetical ferredoxin oxidoreductase gamma subunit
[Pyrococcus horikoshii]
Length = 185
Score = 72.2 bits (174), Expect = 3e-12
Identities = 63/178 (35%), Positives = 84/178 (46%), Gaps = 13/178 (7%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEI-YD 59
++IRF G GGQG V A IL EAA +EG V + RG A I + I
Sbjct: 2 IEIRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIK 61
Query: 60 LMVTNADVLVALHQLGYET--AKSKLKPEGLLIIDTD---------LVKPDREFVGAPFT 108
+ D++V L ET + LK EG++II+T+ L K ++ T
Sbjct: 62 TQIYEPDIVVVLDPSLLETVDVTAGLKEEGIVIINTEKSKDEILEKLKKKPKKLALVDAT 121
Query: 109 RIAEETTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLE 166
IA ET GL +T N LG + TG+V ESVE+AI+ E N KA R+ E
Sbjct: 122 TIALETLGLPIT-NTAILGAVAKATGLVNIESVEKAIKDTFSGELGEKNAKAAREAFE 178
>pir||D75047 keto-valine-ferredoxin oxidoreductase gamma chain PAB1470 -
Pyrococcus abyssi (strain Orsay)
>gi|5458786|emb|CAB50273.1| (AJ248287)
keto-valine-ferredoxin oxidoreductase gamma chain
[Pyrococcus abyssi]
Length = 185
Score = 71.8 bits (173), Expect = 4e-12
Identities = 63/178 (35%), Positives = 84/178 (46%), Gaps = 13/178 (7%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEI-YD 59
++IRF G GGQG V A IL EAA IEG V + RG A I + I
Sbjct: 2 IEIRFHGRGGQGAVTAANILAEAAFIEGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIK 61
Query: 60 LMVTNADVLVALHQLGYET--AKSKLKPEGLLIIDTD---------LVKPDREFVGAPFT 108
+ DV+V L ET + LK +G++I++T+ L + ++ T
Sbjct: 62 TQIYEPDVVVVLDPSLLETVDVTAGLKEDGIVIVNTEKSKEEVLEKLKRKPKKLALVDAT 121
Query: 109 RIAEETTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLE 166
IA ET GL +T N LG + TG+VK ESVE AI+ E N KA R+ E
Sbjct: 122 TIALETLGLPIT-NTAILGAVAKATGLVKIESVETAIKDTFSGELGEKNAKAAREAFE 178
>sp|Q51799|PORC_PYRFU PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES COMMON GAMMA SUBUNIT
[INCLUDES: PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE
OXIDOREDUCTASE GAMMA CHAIN) (POR) (PYRUVIC-FERREDOXIN
OXIDOREDUCTASE GAMMA SUBUNIT); KETOISOVALERATE
OXIDOREDUCTASE SUBUNIT VORC (VOR) (2->
>gi|11279655|pir||T45083 pyruvate synthase (EC 1.2.7.1)
gamma chain [imported] - Pyrococcus furiosus
>gi|1197358|emb|CAA59500.1| (X85250) pyruvate ferredoxin
oxidoreductase [Pyrococcus furiosus]
Length = 185
Score = 68.7 bits (165), Expect = 4e-11
Identities = 60/178 (33%), Positives = 83/178 (45%), Gaps = 13/178 (7%)
Query: 1 MQIRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEI-YD 59
+++RF G GGQG V A IL EAA +EG V + RG A I + I
Sbjct: 2 IEVRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVERRGAPVTAFTRIDNKPIRIK 61
Query: 60 LMVTNADVLVALHQ--LGYETAKSKLKPEGLLIIDTD---------LVKPDREFVGAPFT 108
+ DV+V L L + LK EG++I++T+ L K ++ T
Sbjct: 62 TQIYEPDVVVVLDPSLLDAVDVTAGLKDEGIVIVNTEKSKEEVLEKLKKKPKKLAIVDAT 121
Query: 109 RIAEETTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLE 166
IA E GL +T N LG + TG+VK ES+EEAI+ E N +A R+ E
Sbjct: 122 TIALEILGLPIT-NTAILGAVAKATGLVKIESIEEAIKDTFSGELGEKNARAAREAYE 178
>sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430381|pir||H69114 indolepyruvate oxidoreductase,
beta subunit - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622989|gb|AAB86319.1| (AE000938)
indolepyruvate oxidoreductase, beta subunit
[Methanobacterium thermoautotrophicum]
Length = 196
Score = 68.3 bits (164), Expect = 5e-11
Identities = 55/193 (28%), Positives = 93/193 (47%), Gaps = 27/193 (13%)
Query: 3 IRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDLMV 62
I GVGGQG++ VI+GEAA + + V+ ++ + A RGG ++ I GE++ ++
Sbjct: 5 IYVCGVGGQGIIKTSVIIGEAAMKKDINVVMSEIHGMAQRGGSVSTEIRI--GEVHGSII 62
Query: 63 TN--ADVLVALHQLGYETAKSKLKPEGLLIIDTDLVKPD-------------------RE 101
+ AD+++A L A K+ E +I++T ++ P E
Sbjct: 63 PDGEADLVLAFEPLEAIRALPKMSEESEVILNTSVIPPFNLMRSPHPYPPLDEIMSTLEE 122
Query: 102 FVGAPFTRIAEE---TTGLALTVNMVALGYLIAKTGV-VKPESVEEAIRRRVPRGTEEIN 157
G+ AEE G L++NMV LG A G ++ ES+ ++R +P ++N
Sbjct: 123 RAGSVRGFNAEEIALKAGHILSLNMVMLGAAAATPGFPLESESLISSMRDNLPSRLIDVN 182
Query: 158 IKAFRKGLEVGRE 170
++AFR G E
Sbjct: 183 LRAFRDGFGAAAE 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55661383
Number of Sequences: 2977
Number of extensions: 2067066
Number of successful extensions: 6090
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6065
Number of HSP's gapped (non-prelim): 16
length of query: 170
length of database: 189,106,746
effective HSP length: 57
effective length of query: 113
effective length of database: 154,992,987
effective search space: 17514207531
effective search space used: 17514207531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)