BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0348 (korG-2) DE:2-ketoglutarate ferredoxin oxidoreductase,
subunit gamma (korG-2)
(185 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75168 2-ketoglutarate ferredoxin oxidoreductase, chain gam... 363 e-100
pir||D71046 probable ferredoxin oxidoreductase gamma subunit - P... 334 3e-91
sp|Q57956|KORC_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KET... 213 1e-54
sp|O27114|KORC_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KET... 174 5e-43
pir||G71046 probable ferredoxin oxidoreductase gamma subunit - P... 143 1e-33
pir||E75168 2-ketoglutarate ferredoxin oxidoreductase, chain gam... 141 5e-33
gi|11498082 2-ketoglutarate ferredoxin oxidoreductase, subunit g... 108 6e-23
pir||D72380 hypothetical protein TM0406 - Thermotoga maritima (s... 107 8e-23
pir||A71920 chain of 2-oxoglutarate oxidoreductase - Helicobacte... 92 4e-18
pir||B81400 2-oxoglutarate synthase (EC 1.2.7.3) gamma chain Cj0... 92 5e-18
pir||G64593 probable 2-oxoglutarate synthase (EC 1.2.7.3) gamma ... 89 3e-17
pir||D70400 probable 2-oxoacid--ferredoxin oxidoreductase (EC 1.... 82 6e-15
pir||E70403 probable 2-oxoacid--ferredoxin oxidoreductase (EC 1.... 81 1e-14
gb|AAC38213.1| (AF021094) OorC subunit of 2-oxoglutarate:accepto... 80 1e-14
sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORA... 74 1e-12
pir||D75047 keto-valine-ferredoxin oxidoreductase gamma chain PA... 69 2e-11
dbj|BAA95607.1| (AB042412) pyruvate:ferredoxin oxidoreductase ga... 69 4e-11
sp|O58411|PORC_PYRHO PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES CO... 68 5e-11
>pir||H75168 2-ketoglutarate ferredoxin oxidoreductase, chain gamma (korg-2)
PAB0348 - Pyrococcus abyssi (strain Orsay)
>gi|5457941|emb|CAB49431.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG-2)
[Pyrococcus abyssi]
Length = 185
Score = 363 bits (923), Expect = e-100
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MGGVRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISD 60
MGGVRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISD
Sbjct: 1 MGGVRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISD 60
Query: 61 EPIDYPKVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPL 120
EPIDYPKVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPL
Sbjct: 61 EPIDYPKVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPL 120
Query: 121 TELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
TELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL
Sbjct: 121 TELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
Query: 181 ADKST 185
ADKST
Sbjct: 181 ADKST 185
>pir||D71046 probable ferredoxin oxidoreductase gamma subunit - Pyrococcus
horikoshii >gi|3258089|dbj|BAA30772.1| (AP000006) 185aa
long hypothetical ferredoxin oxidoreductase gamma
subunit [Pyrococcus horikoshii]
Length = 185
Score = 334 bits (848), Expect = 3e-91
Identities = 168/183 (91%), Positives = 178/183 (96%)
Query: 1 MGGVRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISD 60
MG +R+EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISD
Sbjct: 1 MGRLRREILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISD 60
Query: 61 EPIDYPKVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPL 120
EPIDYPKVIEPDYAILLSQQAYDKYLPLVK GGLVI+EEDLVP+RN+ELEK + VYAYPL
Sbjct: 61 EPIDYPKVIEPDYAILLSQQAYDKYLPLVKNGGLVIIEEDLVPNRNEELEKGRKVYAYPL 120
Query: 121 TELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
TE+AEETTGLSLTMNILTLGLFVGLT IVK+ESIEKAVLDAVPKGTEQINLKAL+KGFEL
Sbjct: 121 TEIAEETTGLSLTMNILTLGLFVGLTKIVKKESIEKAVLDAVPKGTEQINLKALYKGFEL 180
Query: 181 ADK 183
A+K
Sbjct: 181 AEK 183
>sp|Q57956|KORC_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT)
>gi|2127896|pir||H64366 probable 2-oxoglutarate synthase
(EC 1.2.7.3) gamma chain - Methanococcus jannaschii
>gi|1591240|gb|AAB98530.1| (U67503) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG)
[Methanococcus jannaschii]
Length = 187
Score = 213 bits (537), Expect = 1e-54
Identities = 108/178 (60%), Positives = 138/178 (76%), Gaps = 1/178 (0%)
Query: 4 VRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI 63
+RKEI + GFGGQG+ILA VILGRAAA+Y+ AVQTQ+YGPE+RGGAS++EVVISDEPI
Sbjct: 8 MRKEIRLSGFGGQGIILAGVILGRAAALYDNKEAVQTQSYGPEARGGASKSEVVISDEPI 67
Query: 64 DYPKVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTEL 123
D+PKVI+PD + LSQQAYDKY +K+GG+V+V+EDLV +K E D ++Y P T +
Sbjct: 68 DFPKVIKPDILVCLSQQAYDKYKDDIKEGGVVLVDEDLV-STDKMPEVDVTMYKIPFTRI 126
Query: 124 AEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFELA 181
A E L + NI+ LG LTNIV +ES+EKA+LD+VPKGTE+ NL A KG+E+A
Sbjct: 127 ASEEIKLPIVANIVMLGALTRLTNIVSKESMEKAILDSVPKGTEEKNLLAFSKGYEVA 184
>sp|O27114|KORC_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT)
>gi|7448903|pir||B69005 probable 2-oxoglutarate synthase
(EC 1.2.7.3) gamma chain - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622138|gb|AAB85531.1| (AE000875) 2-oxoglutarate
oxidoreductase, gamma subunit [Methanobacterium
thermoautotrophicum]
Length = 189
Score = 174 bits (437), Expect = 5e-43
Identities = 90/180 (50%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 4 VRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI 63
VRKEI I GFGGQGVILA ++LG+AA++Y+G YAVQTQ+YGPE+RGGASRAEVVISD I
Sbjct: 4 VRKEIRIAGFGGQGVILAGIVLGKAASLYDGLYAVQTQSYGPEARGGASRAEVVISDHEI 63
Query: 64 DYPKVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKE---LEKDKSVYAYPL 120
DYPKV PD + +S QA Y+ +K+GG +IV+ D+V E ++ + P
Sbjct: 64 DYPKVQSPDILVAMSHQALLTYMDDLKRGGALIVDPDMVVEAEIEDFIRAREVKYFRAPA 123
Query: 121 TELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
T AEE G+++ N++ +G T IV + E+A+ D+VP GTE+ NL A G EL
Sbjct: 124 TRTAEERVGITIVANMVMIGALTEATGIVSVRAAEEAIKDSVPPGTEEKNLMAFQAGREL 183
>pir||G71046 probable ferredoxin oxidoreductase gamma subunit - Pyrococcus
horikoshii >gi|3258092|dbj|BAA30775.1| (AP000006) 170aa
long hypothetical ferredoxin oxidoreductase gamma
subunit [Pyrococcus horikoshii]
Length = 170
Score = 143 bits (357), Expect = 1e-33
Identities = 81/174 (46%), Positives = 107/174 (60%), Gaps = 8/174 (4%)
Query: 7 EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP 66
+I G GGQGV+LA VILG AAA+ EG +QTQ Y SRGG S A+V+ISD I
Sbjct: 2 QIRFAGIGGQGVVLAGVILGEAAAI-EGLRVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
Query: 67 KVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEE 126
V D + L Q Y+ +K GL+I++ DLV + D+ P T +AEE
Sbjct: 61 MVTHADVLVALHQLGYETAKSKLKPDGLLIIDTDLV-------KPDRDFVGAPFTRIAEE 113
Query: 127 TTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
TTGL+LT+N++ LG + T IVK ES+E+A+ VPKGTE+INL+A KG E+
Sbjct: 114 TTGLALTVNMVALGYLIAKTGIVKPESVEEAIRRRVPKGTEEINLRAFRKGLEV 167
>pir||E75168 2-ketoglutarate ferredoxin oxidoreductase, chain gamma (korg-1)
PAB0345 - Pyrococcus abyssi (strain Orsay)
>gi|5457938|emb|CAB49428.1| (AJ248284) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG-1)
[Pyrococcus abyssi]
Length = 170
Score = 141 bits (352), Expect = 5e-33
Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 8/174 (4%)
Query: 7 EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP 66
+I G GGQGV+LA VILG AAA+ EG +QTQ Y SRGG S A+V+ISD I
Sbjct: 2 QIRFAGVGGQGVVLAGVILGEAAAI-EGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL 60
Query: 67 KVIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEE 126
V D + L Q Y+ +K GL+I++ DLV + D+ P T +AEE
Sbjct: 61 MVTNADVLVALHQLGYETAKSKLKPEGLLIIDTDLV-------KPDREFVGAPFTRIAEE 113
Query: 127 TTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFEL 180
TTGL+LT+N++ LG + T +VK ES+E+A+ VP+GTE+IN+KA KG E+
Sbjct: 114 TTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGTEEINIKAFRKGLEV 167
>gi|11498082 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG)
[Archaeoglobus fulgidus]
>gi|6685586|sp|O29779|KORC_ARCFU 2-OXOGLUTARATE SYNTHASE
SUBUNIT KORC (2-KETOGLUTARATE OXIDOREDUCTASE GAMMA
CHAIN) (KOR) (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE
GAMMA SUBUNIT) >gi|7430379|pir||G69308 probable
2-oxoglutarate synthase (EC 1.2.7.3) gamma chain -
Archaeoglobus fulgidus >gi|2650158|gb|AAB90767.1|
(AE001072) 2-ketoglutarate ferredoxin oxidoreductase,
subunit gamma (korG) [Archaeoglobus fulgidus]
Length = 187
Score = 108 bits (266), Expect = 6e-23
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 8 ILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYPK 67
I I G GGQGVI A ++L A A+ EG VQTQ+YGPE+RGGASRA++++SD+ ID+P
Sbjct: 7 IRIAGTGGQGVIKAGLVLAEAFAL-EGKNVVQTQSYGPEARGGASRADIIVSDDEIDFPG 65
Query: 68 VIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEET 127
+ DY ++L AY KY P V VI + LV R +P TE +
Sbjct: 66 LRRVDYLLVLHDSAYRKYYPQVDGETHVIYDSSLVNARRG--------LGFPFTETSIRE 117
Query: 128 TGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFELADKST 185
G L N++ +G + + + E +E + + K E N+KA GFE+ + T
Sbjct: 118 FGTPLFANMIAIGALTAMLGL-QPEKVEVVIQKRMRKAEE--NVKAFRIGFEMGRRVT 172
>pir||D72380 hypothetical protein TM0406 - Thermotoga maritima (strain MSB8)
>gi|4980911|gb|AAD35491.1|AE001720_5 (AE001720)
keto/oxoacid ferredoxin oxidoreductase, gamma subunit,
putative [Thermotoga maritima]
Length = 200
Score = 107 bits (265), Expect = 8e-23
Identities = 64/177 (36%), Positives = 101/177 (56%), Gaps = 2/177 (1%)
Query: 8 ILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYPK 67
I I G GQG ILA +IL +A VYEG + VQTQ+Y + RG S +V+ D PIDYP+
Sbjct: 7 IRIAGISGQGNILAGLILAKAL-VYEGKWVVQTQSYSAQVRGDVSYCDVLYDDSPIDYPE 65
Query: 68 VIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEK-DKSVYAYPLTELAEE 126
D +L Q+A D+ VK G+VI+++ V + +++ + + P TE A
Sbjct: 66 SEYFDIVCILHQKAMDELYKSVKVNGVVILDQTFVKNVPDFVKRITRKILFVPATERAIS 125
Query: 127 TTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFELADK 183
++ N++ +G+ + NIVK +S+++A+ D V + INLKAL G+ + +K
Sbjct: 126 EFKTAMVSNVIMVGVLAKVCNIVKLDSLKRALKDHVRRPLWDINLKALEFGYNMFEK 182
>pir||A71920 chain of 2-oxoglutarate oxidoreductase - Helicobacter pylori
(strain J99) >gi|4155077|gb|AAD06112.1| (AE001486)
SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter
pylori J99]
Length = 184
Score = 92.1 bits (225), Expect = 4e-18
Identities = 53/168 (31%), Positives = 93/168 (54%), Gaps = 4/168 (2%)
Query: 12 GFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP--KVI 69
G GGQGV+LA IL A V G Y +T Y + RGG ++ ++++ + I +P K
Sbjct: 9 GVGGQGVLLAGEILAEAKIV-SGGYGTKTSTYTSQVRGGPTKVDILLDKDEIIFPYAKEG 67
Query: 70 EPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEETTG 129
E D+ + ++Q +Y+++ +KKGG+V+++ +LV KE E+ +Y P+ +A++ G
Sbjct: 68 EIDFMLSVAQISYNQFKSDIKKGGIVVIDPNLVT-PTKEDEEKYQLYKIPIISIAKDEVG 126
Query: 130 LSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKG 177
+T +++ L + V LT V+ + +L VP + N KA G
Sbjct: 127 NIITQSVVALAITVELTKCVEENIVLDTMLKKVPAKVAETNKKAFEIG 174
>pir||B81400 2-oxoglutarate synthase (EC 1.2.7.3) gamma chain Cj0538 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968006|emb|CAB75174.1| (AL139075) OORC subunit of
2-oxoglutarate:acceptor oxidoreductase [Campylobacter
jejuni]
Length = 185
Score = 91.7 bits (224), Expect = 5e-18
Identities = 53/183 (28%), Positives = 98/183 (52%), Gaps = 4/183 (2%)
Query: 4 VRKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI 63
++ ++ GG GGQGVI A IL AA + EG A + Y + RGG ++ +++I D+ I
Sbjct: 1 MKYQLRFGGEGGQGVITAGEILAEAA-IKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEI 59
Query: 64 DYPKVIEPDYAILLS--QQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLT 121
+P +E + +LS + Y + VK+GG+++VE +LV H E K ++ P+
Sbjct: 60 LFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLV-HPESEDYKKWQIFEIPII 118
Query: 122 ELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFELA 181
+A++ G T +++ L + ++ + + +++ +L VP T N KA G + A
Sbjct: 119 TIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYA 178
Query: 182 DKS 184
++
Sbjct: 179 TQA 181
>pir||G64593 probable 2-oxoglutarate synthase (EC 1.2.7.3) gamma chain -
Helicobacter pylori (strain 26695)
>gi|2313709|gb|AAD07656.1| (AE000572) ferredoxin
oxidoreductase, gamma subunit [Helicobacter pylori
26695]
Length = 186
Score = 88.9 bits (217), Expect = 3e-17
Identities = 52/168 (30%), Positives = 92/168 (53%), Gaps = 4/168 (2%)
Query: 12 GFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP--KVI 69
G GGQGV+LA IL A V G Y +T Y + RGG ++ ++++ + I +P K
Sbjct: 9 GVGGQGVLLAGEILAEAKIV-SGGYGTKTSTYTSQVRGGPTKVDILLDRDEIIFPYAKEG 67
Query: 70 EPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEETTG 129
E D+ + ++Q +Y+++ +K+GG+V+++ +LV KE E+ +Y P+ +A++ G
Sbjct: 68 EIDFMLSVAQISYNQFKSDIKQGGIVVIDPNLVT-PTKEDEEKYQIYKIPIISIAKDEVG 126
Query: 130 LSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKG 177
+T +++ L + V LT V+ + +L VP N KA G
Sbjct: 127 NIITQSVVALAITVELTKCVEEIIVLDTMLKKVPAKVADTNKKAFEIG 174
>pir||D70400 probable 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) gamma
chain - Aquifex aeolicus >gi|2983631|gb|AAC07199.1|
(AE000727) ferredoxin oxidoreductase gamma subunit
[Aquifex aeolicus]
Length = 230
Score = 81.5 bits (198), Expect = 6e-15
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 5 RKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI- 63
R I I G GGQGV+ ++ I+G A A G YA +G E R A V SD+PI
Sbjct: 3 RYNIRIAGVGGQGVVTSAHIIGNAMAA-AGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
Query: 64 DYPKVIEPDYAILLSQQAYDK-------YLPLVKKGGLVIVEED--LVPHRNKEL--EKD 112
+ +V+ P+ ++ Q + +K+ G++I+ D ++P +K++ E +
Sbjct: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
Query: 113 KSVYAYPLTELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGT 166
+Y P T++A + G L N+ +G F G+T +V E IEKA+++ GT
Sbjct: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
>pir||E70403 probable 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) gamma
chain - Aquifex aeolicus >gi|2983646|gb|AAC07213.1|
(AE000728) ferredoxin oxidoreductase gamma subunit
[Aquifex aeolicus]
Length = 241
Score = 80.8 bits (196), Expect = 1e-14
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 5 RKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI- 63
R + + GGQG + A+ I+ AA + G+YAV YG E R S + V I EPI
Sbjct: 8 RINVRMPAIGGQGAVSAAHIMATAAD-HAGYYAVSNPFYGAEKRMAPSESYVRIGIEPIY 66
Query: 64 DYPKVIEPDYAILLSQQAYDK-------YLPLVKKGGLVIV--EEDLVPHRNKEL--EKD 112
D +V+ PD ++ Q + +KK GL+I+ EEDL+ +K E++
Sbjct: 67 DRGEVVYPDVIMVFHSQVITMGKSYTMPFYSGIKKNGLIIINAEEDLLSDEDKAFLEERN 126
Query: 113 KSVYAYPLTELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAV 158
++ + T+ A E G L N+ +G F G+T IV ESIE+ +
Sbjct: 127 VKIFNFSATKFAVEIAGTELATNMAMIGAFFGITQIVGMESIEEGI 172
>gb|AAC38213.1| (AF021094) OorC subunit of 2-oxoglutarate:acceptor oxidoreductase
[Helicobacter pylori]
Length = 184
Score = 80.4 bits (195), Expect = 1e-14
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 12 GFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP--KVI 69
G GGQGV+LA IL A + G Y +T Y + RGG ++ ++ + I +P K
Sbjct: 9 GVGGQGVLLAGEILAEAK-IASGGYGTKTSTYTSQVRGGPTKVDLSLDRNEIIFPYGKEG 67
Query: 70 EPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEETTG 129
E D+ + ++Q +Y+++ +K+GG+V+++ +LV KE E+ +Y P+ +A++ G
Sbjct: 68 EIDFMLSVAQISYNQFKSDIKQGGIVVMDPNLVT-PTKEDEEKYQLYKIPIISIAKDEVG 126
Query: 130 LSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKG 177
+T +++ L + T V+ +L VP N KA G
Sbjct: 127 NIITQSVVALAITAEFTKCVEENIALDTMLKKVPAKVADTNKKAFEIG 174
>sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORA (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE ALPHA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE ALPHA SUBUNIT) >gi|7482018|pir||B69194
2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) beta
chain - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621791|gb|AAB85210.1| (AE000849)
2-oxoisovalerate oxidoreductase, alpha subunit
[Methanobacterium thermoautotrophicum]
Length = 477
Score = 73.7 bits (178), Expect = 1e-12
Identities = 59/179 (32%), Positives = 86/179 (47%), Gaps = 13/179 (7%)
Query: 8 ILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYPK 67
+ I GFGGQGV+ + L +AA EG + AYGPE RGG S VVIS E + P
Sbjct: 299 VKIAGFGGQGVLSMGLTLAQAACS-EGRHTSWYPAYGPEQRGGTSSCGVVISGERVGSPA 357
Query: 68 VIEPDYAILLSQQAYDKYLPLVKKGGLVIVEEDLVPHRNKELEKDKSVYAYPLTELAEET 127
V PD + L+Q + D++ V GG+++ + + P E+A +
Sbjct: 358 VDTPDVLVALNQPSLDEFADDVADGGIILYDSTTASFSGGAVR----AMGVPALEIARK- 412
Query: 128 TGLSLTMNILTLGLF--VGLTNIVKRESIEKAVLDAVPKGTEQI---NLKALHKGFELA 181
G + N + LG+ +GLT + ES +A+ G E+I NL+ L G E A
Sbjct: 413 HGTARAANTVMLGVMMALGLTGL-DEESFREAIKFTF-AGKEKIIDMNLRILEAGAEWA 469
>pir||D75047 keto-valine-ferredoxin oxidoreductase gamma chain PAB1470 -
Pyrococcus abyssi (strain Orsay)
>gi|5458786|emb|CAB50273.1| (AJ248287)
keto-valine-ferredoxin oxidoreductase gamma chain
[Pyrococcus abyssi]
Length = 185
Score = 69.5 bits (167), Expect = 2e-11
Identities = 58/178 (32%), Positives = 81/178 (44%), Gaps = 7/178 (3%)
Query: 7 EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP 66
EI G GGQG + A+ IL AA + EG Y +G E RG A I ++PI
Sbjct: 3 EIRFHGRGGQGAVTAANILAEAAFI-EGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIK 61
Query: 67 -KVIEPDYAILLSQQAYDKY--LPLVKKGGLVIVEEDLVPHR--NKELEKDKSVYAYPLT 121
++ EPD ++L + +K+ G+VIV + K K K + T
Sbjct: 62 TQIYEPDVVVVLDPSLLETVDVTAGLKEDGIVIVNTEKSKEEVLEKLKRKPKKLALVDAT 121
Query: 122 ELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFE 179
+A ET GL +T N LG T +VK ES+E A+ D + N KA + FE
Sbjct: 122 TIALETLGLPIT-NTAILGAVAKATGLVKIESVETAIKDTFSGELGEKNAKAAREAFE 178
>dbj|BAA95607.1| (AB042412) pyruvate:ferredoxin oxidoreductase gamma subunit
[Hydrogenobacter thermophilus]
Length = 237
Score = 68.7 bits (165), Expect = 4e-11
Identities = 51/166 (30%), Positives = 79/166 (46%), Gaps = 13/166 (7%)
Query: 5 RKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI- 63
R I + GGQG + A+ I+ AA YEG+YAV +G E R + + I EPI
Sbjct: 5 RVNIRMPALGGQGAVTAAHIIATAAD-YEGYYAVSNPFFGAEKRMAPAESYARIGIEPIY 63
Query: 64 DYPKVIEPDYAILLSQQAYD-------KYLPLVKKGGLVIV--EEDLVPHRNKELEKDKS 114
D +V+ PD ++ Q + +KK GL+I+ EEDL+ +KE + +
Sbjct: 64 DRGEVVYPDVIMVFHPQVITMGKSYTMPFYSGIKKNGLIIINSEEDLLTDEDKEFLESLN 123
Query: 115 VYA--YPLTELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAV 158
V + T+ A + G L+ N+ +G G V E+IE +
Sbjct: 124 VKVLNFSATKFAIDIAGTELSTNMAMIGALFGAVGCVGLEAIEHGI 169
>sp|O58411|PORC_PYRHO PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES COMMON GAMMA SUBUNIT
[INCLUDES: PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE
OXIDOREDUCTASE GAMMA CHAIN) (POR) (PYRUVIC-FERREDOXIN
OXIDOREDUCTASE GAMMA SUBUNIT); KETOISOVALERATE
OXIDOREDUCTASE SUBUNIT VORC (VOR) (2->
>gi|7448910|pir||G71113 probable pyruvate synthase (EC
1.2.7.1) gamma chain - Pyrococcus horikoshii
>gi|3257086|dbj|BAA29769.1| (AP000003) 185aa long
hypothetical ferredoxin oxidoreductase gamma subunit
[Pyrococcus horikoshii]
Length = 185
Score = 68.3 bits (164), Expect = 5e-11
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 7/178 (3%)
Query: 7 EILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPIDYP 66
EI G GGQG + A+ IL AA + EG Y +G E RG A I ++PI
Sbjct: 3 EIRFHGRGGQGAVTAANILAEAAFL-EGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIK 61
Query: 67 -KVIEPDYAILLSQQAYDKY--LPLVKKGGLVIVEEDLVPHR--NKELEKDKSVYAYPLT 121
++ EPD ++L + +K+ G+VI+ + K +K K + T
Sbjct: 62 TQIYEPDIVVVLDPSLLETVDVTAGLKEEGIVIINTEKSKDEILEKLKKKPKKLALVDAT 121
Query: 122 ELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGTEQINLKALHKGFE 179
+A ET GL +T N LG T +V ES+EKA+ D + N KA + FE
Sbjct: 122 TIALETLGLPIT-NTAILGAVAKATGLVNIESVEKAIKDTFSGELGEKNAKAAREAFE 178
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.138 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66277543
Number of Sequences: 2977
Number of extensions: 2691428
Number of successful extensions: 4852
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4824
Number of HSP's gapped (non-prelim): 18
length of query: 185
length of database: 189,106,746
effective HSP length: 57
effective length of query: 128
effective length of database: 154,992,987
effective search space: 19839102336
effective search space used: 19839102336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)