BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0349 (PAB0349) DE:IRON (III) ABC transporter,
periplasmic-binding protein, putative
(349 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75169 probable iron (III) ABC transporter, periplasmic-bin... 697 0.0
pir||C71046 hypothetical protein PH1659 - Pyrococcus horikoshii ... 569 e-161
dbj|BAB05304.1| (AP001512) ferric ion ABC transpoter (ferric ion... 171 1e-41
gi|11500024 spermidine/putrescine ABC transporter, periplasmic s... 165 8e-40
pir||A75255 probable iron ABC transporter, periplasmic substrate... 161 2e-38
pir||B72704 hypothetical protein APE1049 - Aeropyrum pernix (str... 156 3e-37
pir||G70046 iron-binding protein homolog yvrC - Bacillus subtili... 155 5e-37
gi|10957436 metal binding protein, putative [Deinococcus radiodu... 153 3e-36
pir||H72421 hypothetical protein TM0080 - Thermotoga maritima (s... 136 4e-31
emb|CAC11317.1| (AL445063) conserved hypothetical protein [Therm... 118 1e-25
gb|AAG19697.1| (AE005056) iron (III) ABC transporter ATP-binding... 109 6e-23
pir||C82084 conserved hypothetical protein VC2381 [imported] - V... 99 5e-20
dbj|BAB07122.1| (AP001518) ABC transporter (substrate-binding pr... 94 2e-18
gb|AAC27815.1| (U64516) unknown [Shigella dysenteriae] 90 3e-17
pir||D72550 hypothetical protein APE1688 - Aeropyrum pernix (str... 87 2e-16
sp|P37028|YADT_ECOLI HYPOTHETICAL 29.4 KD PROTEIN IN HEML-PFS IN... 85 1e-15
pir||H83139 conserved hypothetical protein PA4045 [imported] - P... 85 1e-15
pir||A75077 iron (iii) abc transporter, ATP-binding protein (hem... 81 2e-14
dbj|BAB04709.1| (AP001510) ABC transporter (substrate-binding pr... 80 3e-14
gb|AAK40482.1| Iron (III) ABC transporter, periplasmic-binding p... 80 4e-14
dbj|BAB07009.1| (AP001518) ferrichrome ABC transporter (ferrichr... 80 4e-14
gb|AAK40806.1| ABC transporter [Sulfolobus solfataricus] 78 1e-13
pir||B69812 ferrichrome ABC transporter (binding prote) homolog ... 78 1e-13
gi|11498044 iron (III) ABC transporter, ATP-binding protein (hem... 78 2e-13
pir||H81279 enterochelin uptake periplasmic binding protein Cj13... 78 2e-13
pir||G71067 hypothetical protein PH1237 - Pyrococcus horikoshii ... 75 1e-12
pir||G81257 probable hemein uptake system periplasmic hemein-bin... 75 2e-12
sp|P11460|FATB_VIBAN FERRIC ANGUIBACTIN-BINDING PROTEIN PRECURSO... 73 4e-12
sp|Q57550|Y085_METJA HYPOTHETICAL PROTEIN MJ0085 >gi|2129082|pir... 73 6e-12
dbj|BAB07016.1| (AP001518) ferrichrome ABC transporter (ferrichr... 72 8e-12
emb|CAA61304.1| (X88849) ceuE [Campylobacter coli] 72 1e-11
pir||E72406 hypothetical protein TM0189 - Thermotoga maritima (s... 72 1e-11
>pir||A75169 probable iron (III) ABC transporter, periplasmic-binding protein
PAB0349 - Pyrococcus abyssi (strain Orsay)
>gi|5457942|emb|CAB49432.1| (AJ248284) IRON (III) ABC
transporter, periplasmic-binding protein, putative
[Pyrococcus abyssi]
Length = 349
Score = 697 bits (1779), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MRKLLIVTFLALIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTVTM 60
MRKLLIVTFLALIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTVTM
Sbjct: 1 MRKLLIVTFLALIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTVTM 60
Query: 61 TRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPG 120
TRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPG
Sbjct: 61 TRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPG 120
Query: 121 VQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDEIYEW 180
VQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDEIYEW
Sbjct: 121 VQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDEIYEW 180
Query: 181 IIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFID 240
IIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFID
Sbjct: 181 IIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFID 240
Query: 241 SLISIAGGENIFHDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKN 300
SLISIAGGENIFHDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKN
Sbjct: 241 SLISIAGGENIFHDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKN 300
Query: 301 GRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAFNYAYQAKAAACASS 349
GRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAFNYAYQAKAAACASS
Sbjct: 301 GRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAFNYAYQAKAAACASS 349
>pir||C71046 hypothetical protein PH1659 - Pyrococcus horikoshii
>gi|3258088|dbj|BAA30771.1| (AP000006) 345aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 345
Score = 569 bits (1450), Expect = e-161
Identities = 278/349 (79%), Positives = 311/349 (88%), Gaps = 4/349 (1%)
Query: 1 MRKLLIVTFLALIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTVTM 60
M++L++ FLA+IV SGCIGS S TPTTTT+P TQS T+TK +T+T T TVT+
Sbjct: 1 MKRLIVPLFLAIIVLVSGCIGS--STTPTTTTTPQTQST--HTITKTKEMTRTITETVTI 56
Query: 61 TRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPG 120
T PTHYPLTI DSLGR+VTI+KEPQRIVSLAPSITETLYFIGALDKVVGVT FDDFPPG
Sbjct: 57 TMTPTHYPLTIVDSLGRRVTIEKEPQRIVSLAPSITETLYFIGALDKVVGVTKFDDFPPG 116
Query: 121 VQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDEIYEW 180
V+KGRTIIG FS PNIEVIASLKPDLIIGTS+HIKYLDKL++IAPV+IVDPKNIDEIY+W
Sbjct: 117 VKKGRTIIGDFSNPNIEVIASLKPDLIIGTSLHIKYLDKLQEIAPVVIVDPKNIDEIYDW 176
Query: 181 IIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFID 240
IIKLGK+VNREEEAKGVVNYMKAIVEDIK KT NA+KVKVF+L+S Y GYWTAG GTFID
Sbjct: 177 IIKLGKIVNREEEAKGVVNYMKAIVEDIKAKTENATKVKVFYLVSYYEGYWTAGNGTFID 236
Query: 241 SLISIAGGENIFHDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKN 300
SLIS+AGGENIFHD++GWK VS EEIVARDPEVII S H G+ P+DLC TPLA+TTAFKN
Sbjct: 237 SLISLAGGENIFHDIQGWKVVSVEEIVARDPEVIILSQHPGVTPKDLCNTPLAKTTAFKN 296
Query: 301 GRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAFNYAYQAKAAACASS 349
GR YM+SDDN++SRPGPRIVLGLEE+AYFIHPE FNYAYQ+KA ACASS
Sbjct: 297 GRIYMISDDNIISRPGPRIVLGLEELAYFIHPEVFNYAYQSKAIACASS 345
>dbj|BAB05304.1| (AP001512) ferric ion ABC transpoter (ferric ion-binding protein)
[Bacillus halodurans]
Length = 327
Score = 171 bits (428), Expect = 1e-41
Identities = 112/306 (36%), Positives = 173/306 (55%), Gaps = 19/306 (6%)
Query: 44 TTETKTVTQTQTVTVTMTRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIG 103
T E + Q V A +P TITDSLG +VTI++EP+R+VSL PSITETL+ I
Sbjct: 25 TDEPEAPADDQGTDVVEEEAGGEFPRTITDSLGNEVTIEEEPERVVSLIPSITETLFAID 84
Query: 104 ALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPDLII--GTSMHIKY--LDK 159
D VVG T FD++P V+ ++ +GG ++E + +L+PDL++ G+ H L++
Sbjct: 85 KGDTVVGRTDFDNYPEEVEDIQS-VGGMEF-DVEQVLALEPDLVLSHGSGAHSSEGGLNQ 142
Query: 160 LEQ--IAPVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNYMK---AIVEDIKTKTSN 214
L + + V++ D +IDE+Y+ I +G+ +E+A V++ MK A + + ++
Sbjct: 143 LREAGVTVVVVHDASSIDEVYDSIAMIGEATGADEQAATVISDMKEGFAALAEKAEAITD 202
Query: 215 ASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVEGWKQVSPEEIVARDPEVI 274
+ V+ +S +T GKGTF+D ++++ +N DVEGW Q S EE VA P+VI
Sbjct: 203 EERANVWVEVSPEPEIYTTGKGTFLDEMLTLINADNAAGDVEGWVQFSEEEAVAFQPDVI 262
Query: 275 IFSAHAGIKPEDLCKTPLA-----ETTAFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYF 329
I + G ED K +A A +N R Y V D V+R GPR+V G E++A
Sbjct: 263 ITT--YGYYVEDPEKQVMARDGWQSVPAVENERVYDVHSDE-VTRSGPRLVQGAEKLAEL 319
Query: 330 IHPEAF 335
I+P+ F
Sbjct: 320 IYPDVF 325
>gi|11500024 spermidine/putrescine ABC transporter, periplasmic
spermidine/putrescine-binding protein (potD)
[Archaeoglobus fulgidus]
Length = 311
Score = 165 bits (413), Expect = 8e-40
Identities = 101/261 (38%), Positives = 158/261 (59%), Gaps = 17/261 (6%)
Query: 85 PQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGV----QKGRTI-IGGFSGPNIEVI 139
PQRIVSLAPS TE L+ IGA D+VVGVT + ++PP V +KG + IGG++ NIE +
Sbjct: 53 PQRIVSLAPSNTEILFAIGAGDRVVGVTDYCNYPPEVVEKKKKGELVSIGGYTTINIEKV 112
Query: 140 ASLKPDLIIGT-SMHIKYLDKLEQIA-PVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGV 197
SLKPDL++ T I+ ++ L ++ VI DPK+++++ + II +G +E A +
Sbjct: 113 VSLKPDLVVATYGNGIENIETLRRMGLTVIAFDPKSVEDVMKDIILIGVATGEKENATKL 172
Query: 198 VNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVEG 257
V M +E ++ + KV+V +L Y W +GK TFID +I +AGGEN+F + +G
Sbjct: 173 VQEMLERIEKVRESMKDKPKVRVAHIL-WYDPIWVSGKNTFIDEVIRLAGGENVF-NFDG 230
Query: 258 WKQVSPEEIVARDPEVIIFSAHAG-------IKPEDLCKTPLAETTAFKNGRAYMVSDDN 310
W+ VS E+++A +P+VII S+ +G + + L+ A K GR Y+V D +
Sbjct: 231 WRTVSVEDLIAANPDVIIVSSGSGMGGGKDVVYEWVVSDDRLSGIKAVKEGRVYVV-DAD 289
Query: 311 LVSRPGPRIVLGLEEIAYFIH 331
+++RP R+ +E +A IH
Sbjct: 290 IINRPSYRLAEAIEVVADLIH 310
>pir||A75255 probable iron ABC transporter, periplasmic substrate-binding
protein - Deinococcus radiodurans (strain R1)
>gi|6460415|gb|AAF12126.1|AE002088_3 (AE002088) iron ABC
transporter, periplasmic substrate-binding protein,
putative [Deinococcus radiodurans]
Length = 335
Score = 161 bits (402), Expect = 2e-38
Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 13/288 (4%)
Query: 53 TQTVTVTMTRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVT 112
T + + + + YPLT+TD LGRKVTIK EPQR++S+ PS +ETL IGA +K+VGV
Sbjct: 55 TLSAGLATSASAVRYPLTLTDDLGRKVTIKAEPQRLISVLPSTSETLCAIGACNKLVGVD 114
Query: 113 SFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQI-APVIIVDP 171
+ DFP V K +GG PN+E I SLKPDL+I S + K ++LEQ+ P + V+P
Sbjct: 115 DYSDFPAQVAK-LPKVGGLYDPNVEKIVSLKPDLVI-VSKYGKLTEQLEQLGVPTVAVNP 172
Query: 172 KNIDEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYW 231
+ +++ LGK+VNRE +AK + M+ + ++ T NA++ + + Y
Sbjct: 173 ETYADVFSKTTLLGKIVNREAQAKALNISMQREIARVEILTKNAARKPLTYFEIDPTPY- 231
Query: 232 TAGKGTFIDSLISIAGGENIFHDVEG-WKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKT 290
+ G +F+ L++ AG N+ G + ++ PE IV ++P++I+ G +
Sbjct: 232 SIGPNSFMGVLLTKAGARNVIPASLGDFPKIDPELIVKQNPQLIL-----GTDLKTASAR 286
Query: 291 P-LAETTAFKNGRAYMVSDD--NLVSRPGPRIVLGLEEIAYFIHPEAF 335
P A K+G+ + + ++ RPGPR+ L +A +HPE F
Sbjct: 287 PGWQNVAAVKSGKVIAIPKELNTILGRPGPRLPQALRGLAKIVHPELF 334
>pir||B72704 hypothetical protein APE1049 - Aeropyrum pernix (strain K1)
>gi|5104719|dbj|BAA80034.1| (AP000060) 493aa long
hypothetical protein [Aeropyrum pernix]
Length = 493
Score = 156 bits (391), Expect = 3e-37
Identities = 98/295 (33%), Positives = 158/295 (53%), Gaps = 22/295 (7%)
Query: 63 APTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQ 122
A ++P+T+ D G V I + P+RIVS+APS TETLY++GALD+VVGV + DFPP +
Sbjct: 162 ASLYFPVTVVDGTGTPVVILERPERIVSMAPSATETLYYVGALDRVVGVDQYSDFPPELN 221
Query: 123 KGR-----TIIGGFSGPNIEVIASLKPDLIIGTSM---HIKYLDKLEQIA-PVIIVDPKN 173
+ + +IGG+ P+IE I SL+PDL++G + HI+ L PVI++ +
Sbjct: 222 EAKEAGEVEVIGGYWNPSIEAILSLEPDLVVGVASVPNHIQVKKVLSAYGIPVILLPDSS 281
Query: 174 IDEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTA 233
++++ E ++ +GK A V V V+ ++ +
Sbjct: 282 LEDVRESMMIVGKATGEVVGAYEAVLKFDMAVAAAGLLLEGVEPVETAVVVWP-NPLFVV 340
Query: 234 GKGTFIDSLISIAGGENIFHDVEGWKQVSPEEIVARDPEVIIF---SAHAGIKPE---DL 287
G GT+ +I +AGG N++ D +GW QVS E ++ DP+VII ++G+ E +
Sbjct: 341 GGGTWEHEVIELAGGVNVYGDTQGWPQVSYESLLEADPDVIILMGGHGNSGVTVEGFIEA 400
Query: 288 CKTPLAETT----AFKNGRAYMVSDD--NLVSRPGPRIVLGLEEIAYFIHPEAFN 336
++ L E A +GR Y++ D+ + +RP PR VL + +A I P AF+
Sbjct: 401 LESQLGEAAWEIDAVASGRIYVLLDEYNDSFARPSPRTVLSIYVLAVLIQPSAFD 455
>pir||G70046 iron-binding protein homolog yvrC - Bacillus subtilis
>gi|2635815|emb|CAB15308.1| (Z99120) similar to
iron-binding protein [Bacillus subtilis]
>gi|2635831|emb|CAB15323.1| (Z99121) similar to
iron-binding protein [Bacillus subtilis]
>gi|2832811|emb|CAA11735.1| (AJ223978) putative metal
binding protein, YvrC [Bacillus subtilis]
Length = 314
Score = 155 bits (389), Expect = 5e-37
Identities = 101/279 (36%), Positives = 161/279 (57%), Gaps = 15/279 (5%)
Query: 67 YPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRT 126
+P+TI D+ + VTIKKEP++IVSL PS TE Y +G DKVVGVT+ D +P V+K
Sbjct: 39 FPVTIDDASNQDVTIKKEPKKIVSLMPSNTEITYALGLGDKVVGVTTNDTYPKEVKKVEK 98
Query: 127 IIGGFSGPNIEVIASLKPDLIIG-TSMHIKYLDKLEQ-----IAPVIIVDPKNIDEIYEW 180
+ G N+E + SLKPDL++ S D ++Q I + + D ++ E+Y+
Sbjct: 99 V--GDMNVNVEKVISLKPDLVLAHESSMSASADAIKQLKDAGITVLTVNDAQSFSEVYKS 156
Query: 181 IIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASK---VKVFFLLSTYGGYWTAGKGT 237
I +G+ E++A +V MK+ ++DI+ K SK VF +S +T GK T
Sbjct: 157 IEMIGEAGGAEKKADQLVKSMKSDLKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDT 216
Query: 238 FIDSLISIAGGENIFHDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTP-LAETT 296
F++ ++++ +N D GW Q++ E IV +P+ I+ + G+K + + K +E
Sbjct: 217 FMNEMLNVIHAKNAAADQTGWVQMTDEAIVKLNPDAIVTT--DGVKAKAVEKRDGWSEIN 274
Query: 297 AFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAF 335
A K+ R Y V D +LV+R GPR++ G+EE+A I+P+ F
Sbjct: 275 AVKHHRVYDV-DPDLVTRSGPRLIEGVEELAESIYPDTF 312
>gi|10957436 metal binding protein, putative [Deinococcus radiodurans]
>gi|7473564|pir||G75618 probable metal binding protein -
Deinococcus radiodurans (strain R1)
>gi|6460865|gb|AAF12569.1|AE001826_38 (AE001826) metal
binding protein, putative [Deinococcus radiodurans]
Length = 352
Score = 153 bits (382), Expect = 3e-36
Identities = 99/278 (35%), Positives = 155/278 (55%), Gaps = 13/278 (4%)
Query: 63 APTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQ 122
A T YPLT+TD LGR V IK EP+R+V++ PS TETL +GA DK+V V ++ +FP V
Sbjct: 81 AATKYPLTVTDDLGRTVVIKSEPRRVVAMLPSHTETLVALGAADKLVAVDTYSNFPRRVV 140
Query: 123 KGRTIIGGFSGPNIEVIASLKPDLIIG-TSMHIKYLDKLEQIAPVII-VDPKNIDEIYEW 180
+ +G P++E I +LKPDLI+ S K KL + + ++ +E++E
Sbjct: 141 EKLPRVGSAFKPDLEAIVALKPDLILADESSGSKLTSKLAALGLTVYGGTAQSYNEVFEK 200
Query: 181 IIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFID 240
+ +GK+VNRE A ++ +A + ++ K+ V++ + ++ G +FI
Sbjct: 201 MAVIGKMVNRETNATRLITTTRADLNALQQSVRQLPKISVYYEVDP--APYSVGPNSFIG 258
Query: 241 SLISIAGGENIFHDVEG-WKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAET-TAF 298
+LI+ AGG+ I G + ++ PE IV +P+VII G+ P+D K T A
Sbjct: 259 TLIAKAGGQTIIPAKLGDFPKIDPELIVKANPQVII-----GVTPDDAKKRGGWTTLNAV 313
Query: 299 KNGRAYMVSDD--NLVSRPGPRIVLGLEEIAYFIHPEA 334
K G Y +D+ + +SRPGPR+ + L + IHPEA
Sbjct: 314 KAGWVYKPTDEERDALSRPGPRLPVALRALIKMIHPEA 351
>pir||H72421 hypothetical protein TM0080 - Thermotoga maritima (strain MSB8)
>gi|4980568|gb|AAD35174.1|AE001694_10 (AE001694)
iron(III) ABC transporter, periplasmic-binding protein,
putative [Thermotoga maritima]
Length = 329
Score = 136 bits (339), Expect = 4e-31
Identities = 89/268 (33%), Positives = 150/268 (55%), Gaps = 24/268 (8%)
Query: 69 LTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTII 128
+T+ D+ GR V I P+R+VSL+P+ T L F+G DK+VGVT +D + +K +
Sbjct: 52 VTVVDNAGRVVEITSAPERVVSLSPAATRFLVFLGLEDKIVGVTDYDSYE--AEK----V 105
Query: 129 GGFSGPNIEVIASLKPDLII-GTSMHIKYLDKLEQIA-PVIIVDPKNIDEIYEWIIKLGK 186
G NIE + SL PDL++ + + KLE+ V++V+P ++++I ++ LG
Sbjct: 106 GAMVPVNIEKVVSLNPDLVLMFGGFQLPEVPKLEKAGLKVLVVNPNSLNDIIRDVVLLGT 165
Query: 187 VVNREEEAKGVVNYMKAIVEDIKTKTSN---ASKVKVFFLLSTYG----GYWTAGKGTFI 239
+ +R + A ++ + +I KT N + + KV +L+S+ G WT G G+++
Sbjct: 166 IFDRRDLALEKSEKLREKMLEIGKKTYNVPPSKRPKVLYLISSPGPDVKEIWTCGMGSYL 225
Query: 240 DSLISIAGGENIFHDV---EGWKQVSPEEIVARDPEVIIFSAH-AGIKPEDLCK----TP 291
+ +IS+AGG NI + GW Q+S E +V+++P+VII + G + E++ K P
Sbjct: 226 NEIISLAGGVNIASGIAGPNGWPQLSIEYVVSQNPDVIIVGVYIPGTENEEIKKILNFEP 285
Query: 292 LAETTAFKNGRAYMVSDDNLVSRPGPRI 319
E A KN R + V D N+ S+P P +
Sbjct: 286 FKEINAVKNKRVFAV-DGNVASQPSPDV 312
>emb|CAC11317.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 322
Score = 118 bits (292), Expect = 1e-25
Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 13/245 (5%)
Query: 87 RIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPDL 146
RIVSL PSIT LY +GA +VG++++ +P + I+G N E + ++ P
Sbjct: 55 RIVSLLPSITVNLYALGAEKDLVGISTYTTYPKNLSV--PIVGELDTVNYEELLNVSPQA 112
Query: 147 IIGTSMHI--KYLDK-LEQIAPVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNYMKA 203
+I + + K L+ PVI V N +I + I++LG + + A +V++M+
Sbjct: 113 VITIPSYYPQNVITKILDMGIPVIEVGQDNFTQIEQQILELGNITGTQNNATEIVHWMQT 172
Query: 204 IVEDIK---TKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVEGWKQ 260
+ + T+ S+ ++ +F+LLST GGYWTAG TFI+ +IA NI ++ G+
Sbjct: 173 SLTYLHQNATRLSDGKRMSIFYLLSTEGGYWTAGNQTFINDFFNIADLRNIANET-GYYT 231
Query: 261 VSPEEIVARDPEVIIFSAHAGIKPEDLCKT-PLAETTAFKNGRAYMVSDDNLVSRPGPRI 319
V I+ P++I+ + + KT P +T A+KNG + + DDN ++P R
Sbjct: 232 VPGSVILNDSPDIILLDQYVN---SSVMKTDPFDQTNAYKNGTYFTIFDDNYFNQPAFRS 288
Query: 320 VLGLE 324
V ++
Sbjct: 289 VYAVQ 293
>gb|AAG19697.1| (AE005056) iron (III) ABC transporter ATP-binding; HemV1
[Halobacterium sp. NRC-1]
Length = 369
Score = 109 bits (269), Expect = 6e-23
Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 28/302 (9%)
Query: 67 YPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRT 126
+P+T D+ +T+ EP+R+V+L PS +T++ +G D VVGV+ F + P +
Sbjct: 42 FPVTEPDASNTAITLDSEPERVVTLNPSAAQTMWELGDRDAVVGVSQFGTYLPTASQRTV 101
Query: 127 IIGGF-SGPNIEVIASLKPDLIIG-TSMHIKYLDKLEQIAPVIIV--DPKNIDEIYEWII 182
+ GG S N+E + L PDL++ ++ + +L + +ID + E
Sbjct: 102 VSGGQPSQTNVEAVVGLDPDLVLAPNTVRNTTVTRLRSAGITVFQFRAATSIDGVVEKTA 161
Query: 183 KLGKVVNREEEAKGVVNYMK---AIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFI 239
+G++ A M+ A + D T +A + +V++ L G +TAG TFI
Sbjct: 162 TIGRLTGNCAAAAATTAEMRDRVAAIADAVPDTDSA-RPRVYYHL---GDGYTAGPNTFI 217
Query: 240 DSLISIAGGENIFHDV---EGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLA--- 293
+ I AGG NI DV + Q+S E IV++DP+V++ G+ + L T A
Sbjct: 218 GAAIEAAGGHNIAADVNTTSSYPQLSEEVIVSQDPDVVV----TGVSADRLDATASALVA 273
Query: 294 ------ETTAFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAFNYAYQAKAAACA 347
TTA+ G V + N +++P PRIV + +A H N A+ +A
Sbjct: 274 PSSVVRNTTAYATGNVVAV-NTNHINQPAPRIVEPMARMANAFHNTTINTTLDAQPSATT 332
Query: 348 SS 349
++
Sbjct: 333 TA 334
>pir||C82084 conserved hypothetical protein VC2381 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656952|gb|AAF95524.1|
(AE004308) conserved hypothetical protein [Vibrio
cholerae]
Length = 276
Score = 99.5 bits (244), Expect = 5e-20
Identities = 77/249 (30%), Positives = 128/249 (50%), Gaps = 8/249 (3%)
Query: 86 QRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPD 145
+RI+SLAP TE Y G DK+V V+ + D+PP + + NIE I +LKPD
Sbjct: 26 ERIISLAPHATEIAYAAGLGDKLVAVSEYSDYPPQALELER-VANHQTINIEKILTLKPD 84
Query: 146 LIIG--TSMHIKYLDKLEQIAPVII-VDPKNIDEIYEWIIKLGKVVNREEEAKGVVNYMK 202
LII + L KL Q+ I K +DEI + I L E + + +
Sbjct: 85 LIIAWPAGNPPRELAKLRQLGFTIYDSQTKTLDEIADNIEALSHYSANPEVGQKAAHDFR 144
Query: 203 AIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVE-GWKQV 261
++D++T+ ++ ++ F+ LS T +G + + S+ GG NIF D E + QV
Sbjct: 145 QRLQDLRTQYASNQPIRYFYQLSE-KPIITLAQGHWPSEVFSLCGGVNIFADSEVPYPQV 203
Query: 262 SPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKNGRAYMVSDDNLVSRPGPRIVL 321
S E+++ + P+VI S HA I + + AE +A +N + + ++ D L +RP PR +
Sbjct: 204 SIEQVLVKQPQVIFTSEHA-IANGHMWRAWQAELSAVQNDQVWALNADWL-NRPTPRTLD 261
Query: 322 GLEEIAYFI 330
+E++ ++
Sbjct: 262 AVEQVCTYL 270
>dbj|BAB07122.1| (AP001518) ABC transporter (substrate-binding protein) [Bacillus
halodurans]
Length = 273
Score = 94.4 bits (231), Expect = 2e-18
Identities = 69/266 (25%), Positives = 136/266 (50%), Gaps = 27/266 (10%)
Query: 87 RIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPDL 146
R+VS+ PS TE + ++G +D++VGV F D+P V + +G +++ + +L+PDL
Sbjct: 2 RLVSICPSNTEKIAYLGLVDQLVGVDDFSDWPT-VTRSLPRLGPDLRIDMDKVEALQPDL 60
Query: 147 II------GTSMHIKYLDKLEQIAPVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNY 200
++ G +++ L K + P ++ +P ++ EI E + L K +A +
Sbjct: 61 VVASLSVPGMERNVEELQKRD--IPHVVYNPHSLKEIGECLKDLAKRTGATAKATVAIER 118
Query: 201 MKAIVEDIKTKTSNASKVKVFFLLSTYGGYW-----TAGKGTFIDSLISIAGGENIFHDV 255
+ I+E ++ +N V++ Y +W T G ++ + ++AGG N++ D
Sbjct: 119 YERIIEHYRSLAANVEPVRL------YWEWWPKPVFTPGGTNWLTEISALAGGINVYGDT 172
Query: 256 E-GWKQVSPEEIVARDPEVIIFS----AHAGIKPEDLCKTPLAET-TAFKNGRAYMVSDD 309
+ ++++ + P+ I + A +KPE L K P E A + G+ + + ++
Sbjct: 173 SIPSVKTDWDDVLNKQPDHICLAWVGIAADKVKPELLWKRPNWERMAALQEGKVHAL-EE 231
Query: 310 NLVSRPGPRIVLGLEEIAYFIHPEAF 335
L RP PR++LGL+++A +HP F
Sbjct: 232 PLYCRPSPRLLLGLKKLAALLHPSHF 257
>gb|AAC27815.1| (U64516) unknown [Shigella dysenteriae]
Length = 304
Score = 90.5 bits (221), Expect = 3e-17
Identities = 75/259 (28%), Positives = 129/259 (48%), Gaps = 16/259 (6%)
Query: 86 QRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPD 145
+RIV S+TE +Y +GA ++VVGV +PP K IG + + E I SL+PD
Sbjct: 51 ERIVVAGGSLTELIYAMGAGERVVGVDETTSYPPETAK-LPHIGYWKQLSSEGILSLRPD 109
Query: 146 LII-----GTSMHIKYLDKLEQIAPVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNY 200
+I G + + L + + P ++++Y I +L K + E+ +V
Sbjct: 110 SVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVPEQGDALVTQ 169
Query: 201 MKAIVEDIKTK-TSNASKVKVFFLLSTYGGY-WTAGKGTFIDSLISIAGGENIFHDVEGW 258
+ +E ++ + + VK F+LS G AGKG+ D+++S+AG EN+ + +
Sbjct: 170 INQRLERVQQNVAAKKAPVKAMFILSAGGSAPQVAGKGSVADAILSLAGAENVATH-QQY 228
Query: 259 KQVSPEEIVARDPEVIIFSAHAGIKPEDLCK----TPLAETTAFKNGRAYMVSDDNLVSR 314
K S E ++A +PEVI+ ++ + D+ + + T A+KN R V D NL+
Sbjct: 229 KSYSAESLIAANPEVIVVTSQ--MVDGDINRLRSIAGITHTAAWKNQRIITV-DQNLILG 285
Query: 315 PGPRIVLGLEEIAYFIHPE 333
GPRI +E + + P+
Sbjct: 286 MGPRIADVVESLHQQLWPQ 304
>pir||D72550 hypothetical protein APE1688 - Aeropyrum pernix (strain K1)
>gi|5105376|dbj|BAA80689.1| (AP000062) 290aa long
hypothetical protein [Aeropyrum pernix]
Length = 290
Score = 87.4 bits (213), Expect = 2e-16
Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 9/213 (4%)
Query: 72 TDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGF 131
++ L R+V + + P+RIVSL+P+ITETLY +G D++ GV+ +D PP ++ + +G +
Sbjct: 25 SEVLNREVEVPETPRRIVSLSPAITETLYMLGLEDRIAGVSVYDHKPPKARE-KPKVGSY 83
Query: 132 SGPNIEVIASLKPDLI-IGTSMHIKYLDKLEQIAPVIIVD-PKNIDEIYEWIIKLGKVVN 189
N++++ L PDLI + T + L+ L + PV + P ++ I + +++G V
Sbjct: 84 YKVNMKLLEQLNPDLILVTTGAQRRILEDLSRRYPVYPIPLPVSVSGIIDQAVQVGIVTG 143
Query: 190 REEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGE 249
EEA + ++ + D +K A + + GG TAG T+I IAG E
Sbjct: 144 ALEEA----SRLETELLDKASKLRGAGRGLRIYYEVYLGGPVTAGAHTYISDAFRIAGVE 199
Query: 250 NIF-HDVEGW-KQVSPEEIVARDPEVIIFSAHA 280
F + W Q PE I P+ I++ A
Sbjct: 200 TPFMSERTTWIYQPPPERINRFKPQFILYEYSA 232
>sp|P37028|YADT_ECOLI HYPOTHETICAL 29.4 KD PROTEIN IN HEML-PFS INTERGENIC REGION
PRECURSOR >gi|7466994|pir||F64739 yadT protein -
Escherichia coli >gi|1552736|gb|AAB08588.1| (U70214)
hypothetical [Escherichia coli]
>gi|1786353|gb|AAC73269.1| (AE000125) orf, hypothetical
protein [Escherichia coli K12]
Length = 266
Score = 85.0 bits (207), Expect = 1e-15
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 14/244 (5%)
Query: 87 RIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPDL 146
R+++L+P+ TE + G VGV+S+ D+PP QK + + G N+E I +LKPDL
Sbjct: 25 RVITLSPANTELAFAAGITP--VGVSSYSDYPPQAQKIEQV-STWQGMNLERIVALKPDL 81
Query: 147 IIGT--SMHIKYLDKLEQIA-PVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNYMKA 203
+I + +D+L + V+ VD +I++I + +L + ++A+ +
Sbjct: 82 VIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLD 141
Query: 204 IVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVE-GWKQVS 262
+K + ++ K +VF + T+GK + + ++ + GGENIF D W QVS
Sbjct: 142 QYAQLKAQYADKPKKRVFLQFGINPPF-TSGKESIQNQVLEVCGGENIFKDSRVPWPQVS 200
Query: 263 PEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKNGRAYMVSDDNLVSRPGPRIVLG 322
E+++AR P+ I+ + P+ + K K + SD R PRI+L
Sbjct: 201 REQVLARSPQAIVITG----GPDQIPKIKQYWGEQLKIPVIPLTSD--WFERASPRIILA 254
Query: 323 LEEI 326
+++
Sbjct: 255 AQQL 258
>pir||H83139 conserved hypothetical protein PA4045 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950241|gb|AAG07432.1|AE004821_5 (AE004821)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 265
Score = 84.7 bits (206), Expect = 1e-15
Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%)
Query: 86 QRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTIIGGFSGPNIEVIASLKPD 145
QR+VSLAPS+T+++ +GA ++VGV + P + +G + N+E + L+PD
Sbjct: 20 QRVVSLAPSLTDSVLELGAARRLVGVLDGGERPAAI-GDLPSVGRYGQVNLERLLELQPD 78
Query: 146 LII--GTSMHIKYLDKLEQIA-PVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNYMK 202
LI+ S+ L +L + I +P ++DE+ + LG+ + E + + +
Sbjct: 79 LILVWPGSVPEAQLQRLRDFGIALFIAEPHSLDELALQLAALGEALGEAEAGQRLSARFR 138
Query: 203 AIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDV-EGWKQV 261
+ + + +KVF+ + Y G+ D+L + G EN+F D+ + QV
Sbjct: 139 EGMRRLAERYRRDKPLKVFYQVWDRPLYTIGGRQVISDAL-RVCGAENLFGDLPQPAPQV 197
Query: 262 SPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKNGRAYMVSDDNLVSRPGPRIVL 321
S E ++ARDP VI+ +HA + E + P T + G+ Y + D NL RP ++
Sbjct: 198 SVEAVLARDPAVIVAGSHAQL--ELWRQWPALAAT--RRGQLYRIEDKNL-ERPSFAMLA 252
Query: 322 GLEEI 326
E++
Sbjct: 253 ATEKL 257
>pir||A75077 iron (iii) abc transporter, ATP-binding protein (hemv-3) PAB0676 -
Pyrococcus abyssi (strain Orsay)
>gi|5458430|emb|CAB49918.1| (AJ248286) IRON (III) ABC
TRANSPORTER, ATP-BINDING PROTEIN (HEMV-3) [Pyrococcus
abyssi]
Length = 366
Score = 81.1 bits (197), Expect = 2e-14
Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 25/260 (9%)
Query: 69 LTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDD----------FP 118
+TI D LGR V + KE RIV++ P + ++ A D VVGV F+
Sbjct: 27 VTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYLNASDMVVGVEDFEKRYSFGRPYIIAH 86
Query: 119 PGVQKGRTIIGGFSG--PNIEVIASLKPDLIIGTSMHIKYLDKLEQIA--PVIIVDPKNI 174
P +++ +I G G PN+E I LKPD+I T + + + +++ PV+++ +
Sbjct: 87 PELKELPSIGPGGPGKLPNLEAIMELKPDVIFATYIDERTANDIQEKTGIPVVVLSYGEL 146
Query: 175 -----DEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGG 229
+E++ + GK++ +EE A+ V++++K++ ED++ +T + KV+ Y G
Sbjct: 147 SNFTDEELFNSLKLAGKILGKEERAEEVISFIKSVEEDLRKRTEGVKEKKVYVGGIGYKG 206
Query: 230 YWTAGKGTFIDSLISIAGGENIFHDV-EGWKQVSPEEIVARDPEVIIFSAHAGIK--PED 286
+ N+ + +G K + E ++ PE IF G+K ED
Sbjct: 207 AHGIESTKADYPPFEVVHAYNVASVLGKGHKFIDKEALLKWQPE-YIFIDEGGLKLILED 265
Query: 287 LCKTP--LAETTAFKNGRAY 304
K P A K G+ Y
Sbjct: 266 YKKNPDFYESLKAVKEGKVY 285
>dbj|BAB04709.1| (AP001510) ABC transporter (substrate-binding protein) [Bacillus
halodurans]
Length = 327
Score = 80.4 bits (195), Expect = 3e-14
Identities = 83/318 (26%), Positives = 139/318 (43%), Gaps = 35/318 (11%)
Query: 4 LLIVTFLALIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTVTMTRA 63
++I+ L +++ FSGC GS E TT+ +TV A
Sbjct: 9 VVILGMLLMVMLFSGCNGS------------------AEETTDENAGGTDETVEPADGEA 50
Query: 64 PTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFI---GALDKVVGVTSFDDFP-- 118
+P TI + G V I+ +P+ + L E L+ I + VVG+ S +FP
Sbjct: 51 TDGFPKTIHHAKGETV-IESKPETVAILYFPYAEHLFAIDEASLVGGVVGLKSLQNFPVY 109
Query: 119 -PGVQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDEI 177
P + G I G N+E I L PD+II T + K D+LE+I +++ +
Sbjct: 110 EPFLTSGEIIDLGDEA-NLEQIVELNPDVIIATEIDDKIYDQLEKITDTVMIPMS--ENW 166
Query: 178 YEWIIKLGKVVNREEEAKGVVNYMKAIVEDI-KTKTSNASKVKVFFLLSTYGGYWTAGKG 236
E II++G VV EE+A+ ++ + DI T K K + T+ + G
Sbjct: 167 QETIIQVGAVVGEEEKAQQYIDSFNQKLTDIAATMEQTEQKGKTALFMMTWANGFNYYSG 226
Query: 237 TFIDSLISIAGGENIFHDVEGWKQVSPEEIVARDPEVII----FSAHAGIKPEDLCKTPL 292
+ G E F +++ + ++ E + DP+ I F+ A K +DL ++P+
Sbjct: 227 VRMAHYYEELGFEP-FAELDDYGEIGLEGVSELDPDYIFLAEDFTETAETKLQDLEESPV 285
Query: 293 -AETTAFKNGRAYMVSDD 309
+ TA K+ Y+V +
Sbjct: 286 WNQLTAVKHDHVYVVDTE 303
>gb|AAK40482.1| Iron (III) ABC transporter, periplasmic-binding protein, putative
[Sulfolobus solfataricus]
Length = 273
Score = 80.0 bits (194), Expect = 4e-14
Identities = 59/205 (28%), Positives = 107/205 (51%), Gaps = 13/205 (6%)
Query: 79 VTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTI-IGGFSGPNIE 137
+ I++ +IVSL P+ TE ++ +G +KV +F P + RT+ IG ++ N++
Sbjct: 14 IKIQRPITKIVSLDPASTEIIFLLGLGEKVKATDAFSYRPEDAR--RTLKIGSYTHVNVD 71
Query: 138 VIASLKPDLIIGTSMHIKYLDKL-----EQIAPVIIVDPKNIDEIYEWIIKLGKVVNREE 192
++ + PD+I T+ K L + + P+ + P NI I ++ +G V+ E
Sbjct: 72 ILKQINPDIIFTTAGAQKELTRKLIGLGFNVYPLPV--PTNIASILNNVLLIGNVLGVYE 129
Query: 193 EAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIF 252
+A+ + + +++ ++ + K+KV+ L GG T G T I IS+ G NIF
Sbjct: 130 KARELYYSLYNVIDGLRARCYK-KKIKVYIELD-LGGPITVGFPTHISDGISLLGSTNIF 187
Query: 253 HDV-EGWKQVSPEEIVARDPEVIIF 276
D+ E + EEI+ RDP++II+
Sbjct: 188 DDISEAYFTPKDEEILKRDPDIIIY 212
>dbj|BAB07009.1| (AP001518) ferrichrome ABC transporter (ferrichrome-binding
protein) [Bacillus halodurans]
Length = 319
Score = 80.0 bits (194), Expect = 4e-14
Identities = 64/272 (23%), Positives = 134/272 (48%), Gaps = 21/272 (7%)
Query: 70 TITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTI-- 127
+ITD + +T P+RI +L+ + +Y +G +VG + + P V + +
Sbjct: 39 SITDFAEQTITFDHVPERIAALSNGDMDIIYALGGT--LVGRPTSNG-PSVVPEAEDVEQ 95
Query: 128 IGGFSGPNIEVIASLKPDLIIGTS-MHIKYLDKLEQI-APVIIVDPKNIDEIYEWIIKLG 185
IG ++E + ++P++++G S M+IK + ++ + A +++ + +++D+I I G
Sbjct: 96 IGSTHELDLEKLTYVQPEVVLGNSQMNIKDVPTVQGLGAQMVLTNAQSVDDIKAQITLFG 155
Query: 186 KVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISI 245
+++ +E+A +V + V +I+++ ++ +V+V + G Y A + +L+ +
Sbjct: 156 EMLQNQEKAAEIVEMINQKVSEIQSERTD-KQVRVLLVYGAPGTYMAALPNSLSGNLLEL 214
Query: 246 AGGENIFHDVEG------WKQVSPEEIVARDPEVIIFSAH-------AGIKPEDLCKTPL 292
AGGENI D + Q++ E +V DP +I+ +H AG E
Sbjct: 215 AGGENIASDFPSLEAYPQYAQLNTERVVEADPHLILLMSHGNSEEVKAGFMKEMEQNAAW 274
Query: 293 AETTAFKNGRAYMVSDDNLVSRPGPRIVLGLE 324
+ A + GR ++ D + PG R+ L+
Sbjct: 275 NQLEAVQAGRIDVLPSDLFGTNPGTRVTEALD 306
>gb|AAK40806.1| ABC transporter [Sulfolobus solfataricus]
Length = 318
Score = 78.4 bits (190), Expect = 1e-13
Identities = 64/264 (24%), Positives = 121/264 (45%), Gaps = 23/264 (8%)
Query: 87 RIVSLAPSITETLYFIGALDKVVGVTSFD-------DFPPGVQKGRTIIGGFSGPNIEVI 139
RIVSLAPS T+ L +G +VG + + + T+ S PNI +
Sbjct: 42 RIVSLAPSDTQILISLGLGKYIVGTDYYSYQLLQSLNLTKDIPSNITVFSQISPPNISGL 101
Query: 140 ASLKPDLIIGTSMHI-KYLDKLEQIAPVIIVDPKNIDEIYEWI----IKLGKVVNREEEA 194
L P +I+ I Y++++++ +++ + Y I +K+G+ N +A
Sbjct: 102 LLLHPTVIVVEKGLIGSYIEQMKEAGLNVLITNNDFASTYSQIENCILKVGEYFNVTSKA 161
Query: 195 KGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYG--GYWTAGKGTFIDSLISIAGGENIF 252
+ ++++M + D T A V V +LL ++TAG FI+S+I AGG N+F
Sbjct: 162 QQLIDWMNQKISDFST----AGNVSVAYLLWICPDLSFYTAGGNVFINSIIVQAGGINVF 217
Query: 253 HDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKNGRAYMVSD--DN 310
+ G+ ++P ++ P V+I + + +++ + Y++ + N
Sbjct: 218 ANYSGYPLLTPSPLLIIKPSVVIAQEVYNLTYTNYL---ISQYKGINSSNLYIIGNLATN 274
Query: 311 LVSRPGPRIVLGLEEIAYFIHPEA 334
L++ PGP V ++ I I +A
Sbjct: 275 LLNEPGPLSVYSIQVIKLIIEGKA 298
>pir||B69812 ferrichrome ABC transporter (binding prote) homolog yfmC - Bacillus
subtilis >gi|2443246|dbj|BAA22317.1| (D86417) YfmC
[Bacillus subtilis] >gi|2633076|emb|CAB12581.1| (Z99108)
similar to ferrichrome ABC transporter (binding protein)
[Bacillus subtilis]
Length = 315
Score = 78.4 bits (190), Expect = 1e-13
Identities = 62/240 (25%), Positives = 108/240 (44%), Gaps = 8/240 (3%)
Query: 78 KVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPP---GVQKGRTIIGGFSGP 134
K T+ P+R+V L S + ++ +G + + D G T +G S P
Sbjct: 51 KTTVSGTPKRVVVLELSFLDAVHNLGITPVGIADDNKKDMIKKLVGSSIDYTSVGTRSEP 110
Query: 135 NIEVIASLKPDLIIG-TSMHIKYLDKLEQIAPVIIVDPK--NIDEIYEWIIKLGKVVNRE 191
N+EVI+SLKPDLII H +L++IAP I + + DE + + K +N+E
Sbjct: 111 NLEVISSLKPDLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSFTTIAKALNKE 170
Query: 192 EEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENI 251
+E K + K ++ D+K + + ++ + ++ + + G +
Sbjct: 171 DEGKEKLAEHKKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYDGEIFKMLGFTHA 230
Query: 252 FHDVEGWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKT-PL-AETTAFKNGRAYMVSDD 309
+++VS E++ DP+++ SA+ G D KT PL A KNG+ Y D
Sbjct: 231 VKSDNAYQEVSLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNLKAVKNGQVYDADRD 290
>gi|11498044 iron (III) ABC transporter, ATP-binding protein (hemV-2)
[Archaeoglobus fulgidus] >gi|7483832|pir||H69303 iron
(III) ABC transporter, ATP-binding protein (hemV-2)
homolog - Archaeoglobus fulgidus
>gi|2650199|gb|AAB90805.1| (AE001075) iron (III) ABC
transporter, ATP-binding protein (hemV-2) [Archaeoglobus
fulgidus]
Length = 366
Score = 77.6 bits (188), Expect = 2e-13
Identities = 75/302 (24%), Positives = 132/302 (42%), Gaps = 42/302 (13%)
Query: 69 LTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFD-DFP--------- 118
+T+TD LGR V + ++ +R+V++ P + ++ A DKVVGV + ++P
Sbjct: 31 VTVTDMLGRTVEVPEKVERVVAIGPGALRLVVYLNASDKVVGVEDAETNWPEMGRPYRMA 90
Query: 119 -------PGVQKGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQI--APVIIV 169
P + KG G PN E I ++KPD+I + D L+Q PV+++
Sbjct: 91 HPEFANLPTIGKG----GPNPSPNAEAIVAVKPDVIFACYIDATQADTLQQQTGVPVVVL 146
Query: 170 DPKNI-----DEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLL 224
+ +EIY + GK++ REE AK ++++++ +D+ T V L
Sbjct: 147 SYGELGNFRAEEIYTSLRLAGKILGREERAKEIISFIENAYKDL---TGRVEGVPEENKL 203
Query: 225 STYGGYWTAGKGTFIDSL------ISIAGGENIF--HDVEGWKQVSPEEIVARDPEVIIF 276
S Y G G I+S + +N+ +V G + E+++ DP++I
Sbjct: 204 SVYVGALGFKGGHGIESTQCNFPPFMVVRAKNVACEANVSGAFFIDKEKLLEWDPDIIFL 263
Query: 277 SA-HAGIKPEDLCKTP--LAETTAFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPE 333
+ + D K P AFKNG+ Y + N + + I ++P+
Sbjct: 264 DENNLHLVLNDYEKNPEIYQSLKAFKNGKIYGILPFNYYTTNIETAIADSYFIGKVLYPD 323
Query: 334 AF 335
F
Sbjct: 324 KF 325
>pir||H81279 enterochelin uptake periplasmic binding protein Cj1355 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968789|emb|CAB73782.1| (AL139078) enterochelin
uptake periplasmic binding protein [Campylobacter
jejuni]
Length = 330
Score = 77.6 bits (188), Expect = 2e-13
Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 46/292 (15%)
Query: 1 MRKLLIVTFLA--LIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTV 58
M+K L+ F A L + + C NS++ +S TT+T T T + + +
Sbjct: 1 MKKSLVFAFFAFFLSLILTAC---NSNSNENNASS----------TTKTNTAT-VKVLPI 46
Query: 59 TMTRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFP 118
+M+ + + DSLG I K P ++V L I +T + DKVVGV + + P
Sbjct: 47 SMSDEGDSF--LVKDSLGEN-KIPKNPSKVVILDLGILDTFDALKLNDKVVGVPA-KNLP 102
Query: 119 PGVQ--KGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDE 176
+Q K + +GG + E I +LKPDLII + K+ DKL++IAP + V N +
Sbjct: 103 KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANF 162
Query: 177 IYEW---IIKLGKVVNREEEA-------KGVVNYMKAIVEDIKTK---TSNASKVKVFFL 223
+ + ++ + K+ E+EA K + K+IV++ K +N++K+ F
Sbjct: 163 LSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKISAFGP 222
Query: 224 LSTYGGYWTAGKGTFIDSLISI-AGGENIFHDVEGWKQVSPEEIVARDPEVI 274
S +G I ++ I A ENI G K ++ E I+ ++P+ I
Sbjct: 223 QSRFG---------IIHDVLGINAVDENIKVGTHG-KSINSEFILEKNPDYI 264
>pir||G71067 hypothetical protein PH1237 - Pyrococcus horikoshii
>gi|3257654|dbj|BAA30337.1| (AP000005) 366aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 366
Score = 75.3 bits (182), Expect = 1e-12
Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 31/294 (10%)
Query: 69 LTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQKGRTII 128
+T+ D LGR V + KE RIV++ P + ++ A + VVGV +DF GR I
Sbjct: 27 VTVKDMLGRTVDVPKEVHRIVAVGPGCLRIIVYLNATNMVVGV---EDFEKRYSFGRPYI 83
Query: 129 ---------------GGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIA--PVIIVDP 171
G PN+E I LKPD+I T + K + +++ PV+++
Sbjct: 84 IAHPELKNLPSIGPGGPGKLPNLEAIMKLKPDIIFATYIDEKTANDIQKKTGIPVVVLSY 143
Query: 172 KNI-----DEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLST 226
+ +E + + GK++ RE+ A+ +++++K+ ED++ +T KV+
Sbjct: 144 GELSNFTDEEFFSSLRLAGKILGREKRAEDIISFIKSAEEDLRKRTEKVKPKKVYVGGIG 203
Query: 227 YGGYWTAGKGTFIDSLISIAGGENIFHDV-EGWKQVSPEEIVARDPEVIIFSAHAGIK-- 283
Y G + N+ + +G K + E ++ PE IF G++
Sbjct: 204 YKGAHGIESTKADYPPFEVLRAYNVASALGKGHKFIDKEILLKWQPE-YIFIDEGGLRLI 262
Query: 284 PEDLCKTP--LAETTAFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAF 335
+D K P A K G+ Y + N S + I ++PE F
Sbjct: 263 LDDYKKNPEFYRSLRAVKEGKLYGLLPYNFYSTNIGTAIADAYFIGKVLYPEEF 316
>pir||G81257 probable hemein uptake system periplasmic hemein-binding protein
Cj1617 [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6969034|emb|CAB73605.1| (AL139079) putative
haemin uptake system periplasmic haemin-binding protein
[Campylobacter jejuni]
Length = 268
Score = 74.5 bits (180), Expect = 2e-12
Identities = 59/245 (24%), Positives = 117/245 (47%), Gaps = 10/245 (4%)
Query: 86 QRIVSLAPSITETLYFIGALDKVVGVTSFDD---FPPGVQKGRTIIGGFSGPNIEVIASL 142
+R+V L P+ ETL+ + A D++VG+ + +P T +G FS P++E I +L
Sbjct: 19 ERLVVLDPASIETLFMLKAEDQIVGIATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVAL 78
Query: 143 KPDLIIGTSMHIKYLDKLEQIA-PVIIVDPKNIDEIYEWIIKLGKVVNREEEAKGVVNYM 201
KP L+I +S + + L+ I + + +++I + I LG++ +E+EA+ +
Sbjct: 79 KPSLVILSSYSLNLEEGLKNFGIKSINLKAERLEDITKNITTLGQITKKEKEAELLKQEF 138
Query: 202 KAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVEGWKQV 261
+ + K N S + ++ + + I ++ + G +N+ + + V
Sbjct: 139 NQKFKKLSDKPLNKSAIYLY----SSNPLMAFNDNSLIADILRLIGIKNLSPQSQISRPV 194
Query: 262 -SPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAETTAFKNGRAYMVSDDNLVSRPGPRIV 320
S E I+ ++P+++I +A D L T A K G Y D ++ R P+I+
Sbjct: 195 ISAEYILKQNPDILILGINAKNNLLD-TNALLKNTKAVKTGSIYFNKDTPILLRLSPKII 253
Query: 321 LGLEE 325
++E
Sbjct: 254 DRIQE 258
>sp|P11460|FATB_VIBAN FERRIC ANGUIBACTIN-BINDING PROTEIN PRECURSOR >gi|79255|pir||A29928
membrane-associated 40K protein precursor - Vibrio
anguillarum plasmid pJM1 >gi|150756|gb|AAA91580.1|
(J03529) 40 kDa protein [Plasmid pJM1]
Length = 322
Score = 73.4 bits (177), Expect = 4e-12
Identities = 67/269 (24%), Positives = 122/269 (44%), Gaps = 29/269 (10%)
Query: 64 PTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPGVQK 123
P P+ I +LG+ V I PQR+ +L + + F+ L+ + D P ++K
Sbjct: 35 PLETPIVIEHNLGQTV-ISNRPQRVAALDMNEVD---FLDQLNVPIAGMVKDFVPHFLEK 90
Query: 124 GRTI-----IGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVD-------P 171
+ +G PN+E I +LKPDL++ T +H ++L ++AP + D
Sbjct: 91 YKNTPDISDLGAIVQPNMEKIYALKPDLVLMTPLHANQYEELSKLAPTVHFDIDFRNSHG 150
Query: 172 KNIDEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYW 231
++D I + +I LG++ N++ A+ V + A V++++ T+ S+ K ++ G +
Sbjct: 151 HHVDIIKQHVIDLGEIFNKQTLAQKKVAEIDAKVDEVQALTAERSE-KALVVMHNNGSFS 209
Query: 232 TAG----KGTFIDSLISIAGGENIFHDVEGWKQVSPEEIVARDPEVI-------IFSAHA 280
+ G G D L I + G + +S E I +P+++ +
Sbjct: 210 SFGIESRYGFVFDVLGVKPASTEIAASLHG-QPISSEFINQANPDILYIIDRTAVMEGKP 268
Query: 281 GIKPEDLCKTPLAETTAFKNGRAYMVSDD 309
I E L L +T A+KNG+ V D
Sbjct: 269 VIDAEHLANPLLRQTKAWKNGKVIFVDAD 297
>sp|Q57550|Y085_METJA HYPOTHETICAL PROTEIN MJ0085 >gi|2129082|pir||E64310 iron transport
system binding protein - Methanococcus jannaschii
>gi|1590868|gb|AAB98067.1| (U67466) iron transport
periplasmic binding protein, putative (ceuE)
[Methanococcus jannaschii]
Length = 373
Score = 72.6 bits (175), Expect = 6e-12
Identities = 88/366 (24%), Positives = 147/366 (40%), Gaps = 64/366 (17%)
Query: 1 MRKLL-IVTFLALIVFFSGCIGSN-SSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTV 58
++KL+ ++T L + V F GC+ N TPT + +P T
Sbjct: 2 LKKLIGLLTILIIAVGFCGCMEQNIEKQTPTASEAPNT---------------------- 39
Query: 59 TMTRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFD-DF 117
+ + D GR+V + KE RIV P + ++ A DKVVGV + +
Sbjct: 40 ----------IKVVDLYGREVEVPKEVNRIVCCGPGCLRLIVYLNATDKVVGVEDTEKKW 89
Query: 118 PPGVQKGRTII------------GGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIA- 164
P + R G PN E I +KPD+I T M +D L+Q
Sbjct: 90 TPWTRPYRIAHPELANLPTIGQGGPCPKPNPEAIIQVKPDVIFVTYMPKDEVDALQQKTG 149
Query: 165 -PVIIVD-----PKNIDEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNA--- 215
PV+++ N +++++ + GK++ +EE AK V+ ++K D+ +T +
Sbjct: 150 IPVVVLSYGQLATFNNEDLFKSLELAGKILGKEERAKEVIEFIKNCQNDLNERTKDIPDD 209
Query: 216 SKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDV--EGWKQVSPEEIVARDPEV 273
K V+ Y G +N+ ++ EG V+ E+I+ +P+
Sbjct: 210 KKPSVYVGGIGYKGLHGIDSTECKYPPFVAVNAKNVADELGKEGHVFVTKEQILKWNPD- 268
Query: 274 IIFSAHAGIK--PEDLCKTP--LAETTAFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYF 329
IIF G+K ED + AFKNG Y + N + + I
Sbjct: 269 IIFIDEGGLKLVVEDYKRNKEFYNSLKAFKNGDVYGLLPYNFYTTNIGTALADAYYIGKV 328
Query: 330 IHPEAF 335
++P+ F
Sbjct: 329 VYPDRF 334
>dbj|BAB07016.1| (AP001518) ferrichrome ABC transporter (ferrichrome-binding
protein) [Bacillus halodurans]
Length = 302
Score = 72.2 bits (174), Expect = 8e-12
Identities = 67/266 (25%), Positives = 126/266 (47%), Gaps = 22/266 (8%)
Query: 82 KKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPP---GVQKGRTIIGGFSGPNIEV 138
+ + RIVS + TE ++ LD V TS+ + P GVQ+ +G P++E+
Sbjct: 44 QSKDDRIVSTTVAATE-IFDALELDLVGIPTSYKEIPERYEGVQE----VGNPMSPDMEL 98
Query: 139 IASLKP-DLIIGTSMHIKYLDKLEQIA-PVIIVDPKNIDEIYEWIIKLGKVVNREEEAKG 196
+ SL P D+I T++ E++ ++ +++D + I LG+ NR E+A+
Sbjct: 99 VKSLNPTDVISVTTLQTDLEPVFERVQLDATFLNLQSLDHMLSEIEALGEKYNRTEQAEA 158
Query: 197 VVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGGYWTAGKGTFIDSLISIAGGENIFHDVE 256
+V+ +K + +++++ V LL G Y A + ++I L+ AGG NI E
Sbjct: 159 LVSSIKTRLAEVESQVEGKESPTVLILLGVPGSYLVATEHSYIGDLVKRAGGVNIVQGEE 218
Query: 257 -GWKQVSPEEIVARDPEVIIFSAHAGIKPEDLCKTPLAE---------TTAFKNGRAYMV 306
+ + E + +P+VI+ +AH PE++ + E A KNGR Y +
Sbjct: 219 VEYLASNTEYLQQANPDVILRAAHG--MPEEVIEMFDQEFQTNDIWKHFNAVKNGRVYDL 276
Query: 307 SDDNLVSRPGPRIVLGLEEIAYFIHP 332
+ + +V ++E+ ++P
Sbjct: 277 DELIFPTTGNLAVVEAMDELVKMLYP 302
>emb|CAA61304.1| (X88849) ceuE [Campylobacter coli]
Length = 328
Score = 71.8 bits (173), Expect = 1e-11
Identities = 78/290 (26%), Positives = 134/290 (45%), Gaps = 44/290 (15%)
Query: 1 MRKLLIVTFLALIVFFSGCIGSNSSATPTTTTSPVTQSQPKEVTTETKTVTQTQTVTVTM 60
M+K L+ F A FF I T+ ++S +T KT T + + ++M
Sbjct: 1 MKKSLVFAFFA---FFLSLI----------LTACDSKSNENNASTAIKTSTTVKVIPISM 47
Query: 61 TRAPTHYPLTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFPPG 120
+ + + DSLG I K P ++V L I +T + + DKV GV + + P
Sbjct: 48 SDEGDSF--LVKDSLGEN-KIPKNPSKVVILDLGILDTFHALRLNDKVAGVPA-KNLPKY 103
Query: 121 VQ--KGRTIIGGFSGPNIEVIASLKPDLIIGTSMHIKYLDKLEQIAPVIIVDPKNIDEIY 178
+Q K + IGG + E I +LKPDLII + K+ +KL +IAP + V N + +
Sbjct: 104 LQQFKDKPSIGGVQQVDFEAINALKPDLIIISGRQSKFYEKL-KIAPTMFVGLDNANFLS 162
Query: 179 EW---IIKLGKVVNREEEA-------KGVVNYMKAIVEDIKTK---TSNASKVKVFFLLS 225
+ ++ + K+ E+EA K + K+IV++ K +N++K+ F S
Sbjct: 163 SFENNVLSVAKLYGLEKEASEKIADIKNEIEQAKSIVDEDKKALIVLTNSNKISAFGPQS 222
Query: 226 TYGGYWTAGKGTFIDSLISI-AGGENIFHDVEGWKQVSPEEIVARDPEVI 274
+G I ++ I A EN+ G K ++ E I+ ++P+ +
Sbjct: 223 RFG---------IIHDVLGINAVDENVKVGTHG-KSINSEFILEKNPDYL 262
>pir||E72406 hypothetical protein TM0189 - Thermotoga maritima (strain MSB8)
>gi|4980685|gb|AAD35281.1|AE001704_2 (AE001704)
iron(III) ABC transporter, periplasmic iron-binding
protein, putative [Thermotoga maritima]
Length = 358
Score = 71.8 bits (173), Expect = 1e-11
Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 23/290 (7%)
Query: 69 LTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDDFP---------- 118
+ I D LGR+V I RIV++ P + ++ A D VVGV F+
Sbjct: 22 IVIKDLLGREVEIPSNVNRIVAVGPGALRLIAYLKATDMVVGVEDFEKLRPYGRPYILAY 81
Query: 119 PGVQKGRTIIGGFSG--PNIEVIASLKPDLIIGTSMHIKYLDKLEQIA--PVIIVDPKNI 174
P ++K ++ G G P++E + +L+PD++ T + K +++ PV+++ N+
Sbjct: 82 PELKKLPSVGPGGPGKLPDLESLITLQPDVVFITYVDRKTAKDIQEKTGIPVVVLSYGNL 141
Query: 175 -----DEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGG 229
++++ I GK++ REE A VV++++ ED+ T++ V+ Y G
Sbjct: 142 GTFEDEDLFRSIELAGKILGREERAHEVVDFIRKAQEDLVTRSEGVESPTVYVGGIGYKG 201
Query: 230 YWTAGKGTFIDSLISIAGGENIFHDV-EGWKQVSPEEIVARDPEVIIFSAHA-GIKPEDL 287
+ N+ ++ EG K + PE+++ +PE I + + +D
Sbjct: 202 AHGIDSTEAKYPPFVVLHARNVVDELGEGHKFIDPEKLLVWNPEYIFIDENGLSLVLDDY 261
Query: 288 CKTP--LAETTAFKNGRAYMVSDDNLVSRPGPRIVLGLEEIAYFIHPEAF 335
K +A K G+ Y + N + + I ++PE F
Sbjct: 262 SKHREFYESLSAVKRGKVYGILPYNYYTTNIGTALADAYFIGKVLYPERF 311
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.135 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131028819
Number of Sequences: 2977
Number of extensions: 5617989
Number of successful extensions: 29778
Number of sequences better than 1.0e-10: 32
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 29683
Number of HSP's gapped (non-prelim): 34
length of query: 349
length of database: 189,106,746
effective HSP length: 58
effective length of query: 291
effective length of database: 154,394,500
effective search space: 44928799500
effective search space used: 44928799500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)