BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0351 (PAB0351) DE:ABC transporter
(276 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75169 abc transporter PAB0351 - Pyrococcus abyssi (strain ... 525 e-148
pir||C71045 probable membrane protein - Pyrococcus horikoshii >g... 470 e-132
gi|11499563 ABC transporter, permease protein [Archaeoglobus ful... 97 2e-19
sp|Q55282|MNTB_SYNY3 MANGANESE TRANSPORT SYSTEM MEMBRANE PROTEIN... 96 4e-19
gb|AAF81673.1|AF232688_2 (AF232688) SloB [Streptococcus mutans] 94 2e-18
emb|CAB95742.1| (AJ276960) putative ABC transporter [Staphylococ... 94 2e-18
dbj|BAB05109.1| (AP001511) unknown conserved protein in others [... 93 4e-18
sp|P42361|P29K_STRGC 29 KD MEMBRANE PROTEIN IN PSAA 5'REGION (OR... 93 4e-18
pir||T46653 hydrophobic membrane protein ZurM [imported] - Liste... 93 4e-18
gb|AAF23273.2|AF101263_3 (AF121672) ABC transporter MreB [Staphy... 91 2e-17
pir||F82120 zinc ABC transporter, permease protein VC2083 [impor... 90 2e-17
sp|P31309|P29K_STRPA 29 KD MEMBRANE PROTEIN IN FIMA 5'REGION (OR... 90 3e-17
pir||G83344 probable permease of ABC transporter PA2409 [importe... 90 3e-17
sp|P73087|YK45_SYNY3 HYPOTHETICAL 30.4 KD PROTEIN SLR2045 >gi|74... 89 5e-17
dbj|BAB05114.1| (AP001511) ABC transporter (permease) [Bacillus ... 89 6e-17
pir||E69180 conserved hypothetical protein MTH606 - Methanobacte... 88 1e-16
sp|P42362|P29K_STRPN 29 KD MEMBRANE PROTEIN IN PSAA 5'REGION (OR... 87 3e-16
gb|AAD56938.1|AF180520_3 (AF180520) integral membrane protein Mt... 86 5e-16
pir||T46755 membrane protein adcB [imported] - Streptococcus pne... 83 3e-15
gb|AAD41068.1|AF128999_4 (AF128999) SitD [Salmonella typhimurium] 83 3e-15
gi|11467415 putative protein of 299 amino acids [Cyanophora para... 83 4e-15
sp|P44691|ZNUB_HAEIN HIGH-AFFINITY ZINC UPTAKE SYSTEM MEMBRANE P... 82 1e-14
pir||G75293 probable manganese ABC transporter, permease protein... 80 3e-14
sp|P44660|Y359_HAEIN HYPOTHETICAL PROTEIN HI0359 >gi|1074369|pir... 80 4e-14
gb|AAC68698.1| (AF097414) EfmB [Enterococcus faecium] 79 7e-14
gb|AAD09974.1| (AF055088) putative hydrophobic membrane protein;... 78 9e-14
pir||E72415 zinc ABC transporter, permease protein - Thermotoga ... 77 2e-13
emb|CAB56735.1| (AL121600) ABC transporter protein, integral mem... 77 2e-13
pir||A72751 hypothetical protein APE0534 - Aeropyrum pernix (str... 77 3e-13
pir||F82959 permease of ABC zinc transporter ZnuB PA5501 [import... 76 4e-13
pir||F71667 hypothetical protein RP621 - Rickettsia prowazekii >... 75 1e-12
sp|P39832|ZNUB_ECOLI HIGH-AFFINITY ZINC UPTAKE SYSTEM MEMBRANE P... 74 2e-12
sp|Q56954|YFEC_YERPE CHELATED IRON TRANSPORT SYSTEM MEMBRANE PRO... 73 4e-12
pir||C69756 conserved hypothetical protein yceA - Bacillus subti... 73 4e-12
emb|CAB69728.1| (AL137166) putative metal transport ABC transpor... 72 9e-12
pir||E81431 ABC transporter integral membrane protein Cj0141c [i... 70 3e-11
sp|P44661|Y360_HAEIN HYPOTHETICAL PROTEIN HI0360 >gi|1074218|pir... 69 6e-11
pir||D70355 conserved hypothetical protein aq_621 - Aquifex aeol... 69 6e-11
pir||H72064 ABC transporter, permease protein CP0209 [imported] ... 69 6e-11
gb|AAD41067.1|AF128999_3 (AF128999) SitC [Salmonella typhimurium] 68 1e-10
>pir||H75169 abc transporter PAB0351 - Pyrococcus abyssi (strain Orsay)
>gi|5457949|emb|CAB49439.1| (AJ248284) ABC transporter
[Pyrococcus abyssi]
Length = 276
Score = 525 bits (1337), Expect = e-148
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MIEEYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNL 60
MIEEYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNL
Sbjct: 1 MIEEYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNL 60
Query: 61 SLIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
SLIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF
Sbjct: 61 SLIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV
Sbjct: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ
Sbjct: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
Query: 241 VASTFLGYYFDIPPSGLATILLATIYGALALGRKVA 276
VASTFLGYYFDIPPSGLATILLATIYGALALGRKVA
Sbjct: 241 VASTFLGYYFDIPPSGLATILLATIYGALALGRKVA 276
>pir||C71045 probable membrane protein - Pyrococcus horikoshii
>gi|3258080|dbj|BAA30763.1| (AP000006) 276aa long
hypothetical membrane protein [Pyrococcus horikoshii]
Length = 276
Score = 470 bits (1197), Expect = e-132
Identities = 239/275 (86%), Positives = 257/275 (92%)
Query: 1 MIEEYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNL 60
MIEEYLLRA LASLMV TLLGLLSPLIN+KG+AFLTHATFHALLFGAVLGMILGLI G+L
Sbjct: 1 MIEEYLLRALLASLMVSTLLGLLSPLINVKGVAFLTHATFHALLFGAVLGMILGLIMGDL 60
Query: 61 SLIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
SLIFWISLL AI +VIGIAEMEIRGYSSDTAVG MAG+IAGLTVLGFG+LYKVMASRPYF
Sbjct: 61 SLIFWISLLIAIIVVIGIAEMEIRGYSSDTAVGTMAGIIAGLTVLGFGILYKVMASRPYF 120
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
ALSESIVSYLTGEIFLITF+DL LLVIGG +VF IM+ FYRDFLYLSFDPEGLESHGGNV
Sbjct: 121 ALSESIVSYLTGEIFLITFDDLTLLVIGGFLVFTIMVIFYRDFLYLSFDPEGLESHGGNV 180
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
RLYLM+LYFLVG++GGLIVKTVGLITLQVLAVLPGAIA++I+R IRE V ISLGLTL IQ
Sbjct: 181 RLYLMLLYFLVGAVGGLIVKTVGLITLQVLAVLPGAIALTISRGIREFVGISLGLTLAIQ 240
Query: 241 VASTFLGYYFDIPPSGLATILLATIYGALALGRKV 275
V+STFLGYYF+IPPSGLATI L TIYG LAL RK+
Sbjct: 241 VSSTFLGYYFNIPPSGLATIFLGTIYGVLALRRKI 275
>gi|11499563 ABC transporter, permease protein [Archaeoglobus fulgidus]
>gi|7447908|pir||D69497 ABC transporter, permease
protein homolog - Archaeoglobus fulgidus
>gi|2648558|gb|AAB89273.1| (AE000966) ABC transporter,
permease protein [Archaeoglobus fulgidus]
Length = 264
Score = 97.1 bits (238), Expect = 2e-19
Identities = 68/270 (25%), Positives = 126/270 (46%), Gaps = 13/270 (4%)
Query: 2 IEEYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLS 61
++E +LRA +AS+++ + L + +FL + H+ L G L + L I G +
Sbjct: 4 MDELILRALIASVLISLNASIAGTLTVFRRASFLVAGSAHSALAGVALALFLNSI-GFSA 62
Query: 62 LIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLG-FGVLYKVMASRPYF 120
F +++ A+ + A+ RG D VG+ + + F + + AS +
Sbjct: 63 HYFLFAVIAAVFFAVLSAKAARRG---DVNVGIATAFSLSMALAAIFIAMTRNSASNAW- 118
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
+L G++ L+T +D +++ I V + + FY F+++SFDP G E+ NV
Sbjct: 119 -------QFLFGDVLLLTLDDFVIVAITTAFVLIAISFFYHKFIFISFDPSGAEATCINV 171
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
LY +L L+ +K VG I + + + P + A + R + + IS L L+
Sbjct: 172 YLYDFLLIALISISVVTALKAVGAILVFSIFIAPSSTARLLGRNLSSVFLISFVLALSSL 231
Query: 241 VASTFLGYYFDIPPSGLATILLATIYGALA 270
+YF IP +A + ++IY A++
Sbjct: 232 YFGLLTSFYFSIPSGAVAAAIASSIYFAVS 261
>sp|Q55282|MNTB_SYNY3 MANGANESE TRANSPORT SYSTEM MEMBRANE PROTEIN MNTB
>gi|2126525|pir||S55047 ABC-type transport system
permease protein mntB [validated] - Synechocystis sp.
(PCC 6803) >gi|755077|gb|AAA68932.1| (L34630) membrane
protein [Synechocystis sp.] >gi|1653000|dbj|BAA17917.1|
(D90910) Mn transporter MntB [Synechocystis sp.]
Length = 306
Score = 96.3 bits (236), Expect = 4e-19
Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 23/273 (8%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
E+L+RA S VG + +LS I LKG + + A HA++ G VL L + F +
Sbjct: 21 EFLIRAIWVSAFVGLVCAVLSCYITLKGWSLMGDAISHAVVPGVVLAYALNIPFAIGAFT 80
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
F AI V ++ D +G+ V G LG ++ K+ ++ F +
Sbjct: 81 FGFGATVAIGYVKSKTRLK-----EDAVIGI---VFTGFFALGLVLVTKIPSNVDLFHI- 131
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
L G + I+ D++ +I G I ++++ +D L FDP +H + L
Sbjct: 132 ------LFGNVLGISQQDIIQTLIAGSITLIVILLRRKDLLLFCFDP----NHAKAIGLR 181
Query: 184 LMILYFLVGSIGGLIV----KTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTI 239
++Y+ + S+ L + +T G+I + + V PG+I ++ R ++ S+ ++
Sbjct: 182 TQVMYYTLLSVLALTIVAALQTAGIILVISMLVTPGSIGYLLSDRFDHMLWYSVVSSVLS 241
Query: 240 QVASTFLGYYFDIPPSGLATILLATIYGALALG 272
V T+L Y+FD+ G+ ++L T++ +G
Sbjct: 242 CVLGTYLSYHFDVSTGGMIVVILTTLFVIAMIG 274
>gb|AAF81673.1|AF232688_2 (AF232688) SloB [Streptococcus mutans]
Length = 279
Score = 94.0 bits (230), Expect = 2e-18
Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 15/262 (5%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
+L A + ++++G + G + I L+G++ + A HA+L G L ILG+ F +++F
Sbjct: 14 FLQNALVTAIVIGIVAGAVGCFIILRGMSLMGDAISHAVLPGVALSYILGINFFIGAIVF 73
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSE 124
L A I+ I E I SDTA+G+ L V+ G+ S
Sbjct: 74 G---LLASLIITFIKENSI--IKSDTAIGITFSSFLALGVILIGLANS----------ST 118
Query: 125 SIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYL 184
+ L G I + D + + L+V L + F+R L SFDP +S G +V Y
Sbjct: 119 DLFHILFGNILAVQDMDKWITLGISLLVLLFICLFFRPLLLTSFDPVLAKSMGLSVHFYH 178
Query: 185 MILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAST 244
+L L+ + +++VG I + L + P A A A ++ ++ +S L VA
Sbjct: 179 YLLMILLTLVSVTAMQSVGTILIVALLITPAATAYLYANSLKTMILLSSTLGAFASVAGL 238
Query: 245 FLGYYFDIPPSGLATILLATIY 266
F+GY F+I + A I+
Sbjct: 239 FIGYSFNIAAGSSIVLTSALIF 260
>emb|CAB95742.1| (AJ276960) putative ABC transporter [Staphylococcus xylosus]
Length = 286
Score = 94.0 bits (230), Expect = 2e-18
Identities = 70/281 (24%), Positives = 135/281 (47%), Gaps = 16/281 (5%)
Query: 1 MIEEYLLRAFLA-SLMVGTLLGLLSPLIN----LKGIAFLTHATFHALLFGAVLGMILGL 55
MIE L F+ SL G L+GL++PLI ++ ++ + A H L G GM +
Sbjct: 1 MIEALLNFDFMRYSLASGLLIGLIAPLIGAFIVVRRLSLIADALSHVTLGGISFGMFVVT 60
Query: 56 IFGNLSLI--FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKV 113
+ L+ I W +L A+ + I ++ YS+ + + + AG+ + ++
Sbjct: 61 VIPTLAFINPMWFGILYAVIGALLIEKLRT-SYSNYQEIAIPIIMSAGIAL---SAIFIS 116
Query: 114 MASRPYFALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGL 173
+A ++ IV L G I +T +DL+ +++ +IV + +++FY++ LSFD E
Sbjct: 117 LAD----GFNQEIVGLLFGSISAVTLSDLITIIVIVIIVLVFILSFYKELFILSFDEE-Y 171
Query: 174 ESHGGNVRLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISL 233
G + I +V + ++ VG++ + L LP AI+M + + ++L+ +S+
Sbjct: 172 SKVIGIPKWIQFIFIIIVAMVISASMRVVGILLVSALITLPVAISMRLTKGFKQLIILSV 231
Query: 234 GLTLTIQVASTFLGYYFDIPPSGLATILLATIYGALALGRK 274
+ + L +Y +I P G+ +LL I + +K
Sbjct: 232 VIGEISVIGGLVLAFYMNISPGGVIVVLLVLILAIAMMYQK 272
>dbj|BAB05109.1| (AP001511) unknown conserved protein in others [Bacillus
halodurans]
Length = 292
Score = 92.8 bits (227), Expect = 4e-18
Identities = 71/272 (26%), Positives = 134/272 (49%), Gaps = 27/272 (9%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
YL +A A+++VG + G++ I L+G+A + A HA+L G V+ ++G F ++I
Sbjct: 16 YLQQALTAAILVGIICGVIGCFIILRGMALMGDAISHAVLPGVVIAYMIGASFFIGAVI- 74
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVM------AGVIAGLTVLGFGVLYKVMASRP 118
++TA+AI G R D+A+G++ G++ + G GV
Sbjct: 75 -TGVITALAI--GYVSQNSR-VKEDSAIGILFTAAFALGIVLITGMRGTGV--------- 121
Query: 119 YFALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGG 178
+ L G + ++ DL + + GL V LI+I FYR L +FDP ++ G
Sbjct: 122 ------DLWHILFGNVLAVSRTDLWVTLGIGLFVLLIIILFYRPLLLSTFDPVMAQATGI 175
Query: 179 NVRLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLT 238
V++ +L L+ + ++TVG++ + + + PGA A + R+ ++ ++ +
Sbjct: 176 PVQMIHYLLMLLLSLVTVAALQTVGIVLVVAMLITPGATAYLLTNRLPVMLCLAAMFGVI 235
Query: 239 IQVASTFLGYYFDIPPSGLATILLATIYGALA 270
+A + +D+ SG + +L+A+ ALA
Sbjct: 236 SAIAGIYFSVIYDV-ASGASIVLVASTLFALA 266
>sp|P42361|P29K_STRGC 29 KD MEMBRANE PROTEIN IN PSAA 5'REGION (ORF1)
>gi|7447912|pir||T11550 probable membrane protein -
Streptococcus gordonii >gi|310632|gb|AAA71946.1|
(L11577) hydrophobic membrane protein [Streptococcus
gordonii]
Length = 278
Score = 92.8 bits (227), Expect = 4e-18
Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 21/265 (7%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
+L A + ++++G + G + I L+G++ + A HA+L G L ILG+ F ++ F
Sbjct: 14 FLQNALITAIVIGVVAGAVGCFIILRGMSLMGDAISHAVLPGVALSFILGINFFIGAITF 73
Query: 65 WISLLTAIAIVIGIAEMEIRGYS---SDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFA 121
LL +I I I+G S SDTA+G+ L + +L V S
Sbjct: 74 --GLLASIIITY------IKGNSIIKSDTAIGITFSSFLALGI----ILISVAKS----- 116
Query: 122 LSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVR 181
S + L G I + D+ + + G++V L++ F++ L SFDP ++ G V
Sbjct: 117 -STDLFHILFGNILAVQDLDMWISIGVGILVLLVISIFFKQLLLTSFDPLLAQAMGMKVN 175
Query: 182 LYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQV 241
Y +L L+ + +++VG I + + + P A A A+ ++ ++ +S L V
Sbjct: 176 FYHYLLMILLTLVSVTAMQSVGTILIVAMLITPAATAYLYAKSLKTMILLSSALGAGASV 235
Query: 242 ASTFLGYYFDIPPSGLATILLATIY 266
F+GY F++ + A I+
Sbjct: 236 LGLFIGYSFNVAAGSSIVLTSALIF 260
>pir||T46653 hydrophobic membrane protein ZurM [imported] - Listeria
monocytogenes >gi|5019735|gb|AAD37836.1|AF104349_2
(AF104349) hydrophobic membrane protein ZurM [Listeria
monocytogenes]
Length = 295
Score = 92.8 bits (227), Expect = 4e-18
Identities = 59/273 (21%), Positives = 131/273 (47%), Gaps = 8/273 (2%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
+++ F+ L++G + LL I ++ ++ + A H L G + L + L+ +
Sbjct: 12 DFIRNTFIVGLVIGVVAPLLGSFIVVRKLSLMADALSHVTLGGIAVSWFLSKTYLPLAAL 71
Query: 64 FWISLLTAIAIVIGIAEMEIRG-YSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFAL 122
+ L ++V + ++R Y + + + AG+ GF V++ +A+
Sbjct: 72 NPLYLGFGFSVVGSLLMEKLRNVYKHFEELAIPIIMSAGM---GFSVIFISLAN----GF 124
Query: 123 SESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRL 182
+ + SYL G + ++ D++ +V+ +IVF+++++ Y++ LSFD E + G ++
Sbjct: 125 NTDLFSYLFGSVSAVSRTDMITIVVTAIIVFIVILSLYKELFLLSFDEEYAKVSGLKAKV 184
Query: 183 YLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVA 242
+ +I LV + ++ VG++ + L LP A A+ IA+ ++ + +S+ +
Sbjct: 185 FDVIFMVLVALVIASSMRIVGILLVSSLMTLPVAAAIRIAKGFKQTILLSILFGEIAVIG 244
Query: 243 STFLGYYFDIPPSGLATILLATIYGALALGRKV 275
F YY ++ P G I+ + L +K+
Sbjct: 245 GLFTAYYLNLAPGGAIVIISVLLLIVTILYQKI 277
>gb|AAF23273.2|AF101263_3 (AF121672) ABC transporter MreB [Staphylococcus aureus]
Length = 277
Score = 90.9 bits (222), Expect = 2e-17
Identities = 67/260 (25%), Positives = 125/260 (47%), Gaps = 17/260 (6%)
Query: 13 SLMVGTLLGLLSPLIN----LKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI--FWI 66
SL+ G L+G ++PLI ++ ++ + A H L G GM L I L I W
Sbjct: 4 SLISGILIGFIAPLIGAFIVVRRLSLIADALSHVTLGGISFGMFLLTIMPTLVFINPMWF 63
Query: 67 SLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSESI 126
+L AI + I ++ Y++ + + + AG+ + ++ +A ++ I
Sbjct: 64 GILFAIVGALLIEKLR-TSYTAYQEIAIPIIMSAGIAL---SAIFISLAD----GFNQEI 115
Query: 127 VSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYLMI 186
V L G I + +DL +++ +IV L + FY++ LSFD E + G + ++
Sbjct: 116 VGLLFGSISAVNISDLTTIIVIAIIVVLFITLFYKELFILSFDEEYSKVIG--IPKWIQF 173
Query: 187 LYF-LVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVASTF 245
L+ +V + ++ VG++ + L LP AI+M I + ++L+ +S+ L +
Sbjct: 174 LFIVIVAMVISASMRVVGILLVSALITLPIAISMRITKSFKQLILLSVFLGELSVILGLV 233
Query: 246 LGYYFDIPPSGLATILLATI 265
L +Y DI P G+ +LL +
Sbjct: 234 LAFYMDISPGGVIVVLLVIL 253
>pir||F82120 zinc ABC transporter, permease protein VC2083 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656631|gb|AAF95229.1| (AE004282) zinc ABC
transporter, permease protein [Vibrio cholerae]
Length = 260
Score = 90.5 bits (221), Expect = 2e-17
Identities = 70/273 (25%), Positives = 129/273 (46%), Gaps = 15/273 (5%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
E LL + LA L + + G L + + +A+ HA L G LG +L + NL L
Sbjct: 3 ELLLPSLLAGLGIAIIAGPLGSFVVWRRMAYFGDTLAHASLLGLALGFLLDI---NLYLA 59
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
+ L AI++ + + ++ ++DT +G+MA L ++ L V
Sbjct: 60 LLVCCLGMAAILVAMQKQKL--IATDTLLGIMAHSALSLGMIAVSFLDNVRID------- 110
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
++SYL G++ I+ +DL + G + V LI+ ++ L S + E G N L
Sbjct: 111 --LMSYLFGDLLAISPSDLTFIWFGVVTVSLIVYLLWQPLLSTSVNEELAFVEGTNTDLM 168
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
+IL L+G + + +K VG + + L ++P A A ++R + ++GL + +
Sbjct: 169 RLILMLLIGLVIAVGMKFVGALIMGSLLIIPAATARRLSRTPEAMAFWAIGLGVLSVIGG 228
Query: 244 TFLGYYFDIPPSGLATILLATIYGALALGRKVA 276
L ++FD P+G + ++ A + L ++VA
Sbjct: 229 LALSWHFD-TPAGPSVVVSAAVLFVLTQFKRVA 260
>sp|P31309|P29K_STRPA 29 KD MEMBRANE PROTEIN IN FIMA 5'REGION (ORF1)
>gi|2147496|pir||S61911 membrane protein 1 -
Streptococcus parasanguis >gi|153833|gb|AAA53076.1|
(M26130) ORF1; putative [Streptococcus parasanguinis]
Length = 280
Score = 90.1 bits (220), Expect = 3e-17
Identities = 67/262 (25%), Positives = 121/262 (45%), Gaps = 16/262 (6%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
+L A + ++ +G + G + I L+G++ + A HA+L G L ILG+ F +++F
Sbjct: 14 FLQNALITAIAIGIVAGAVGCFIILRGMSLMGDAISHAVLPGVALSFILGINFFIGAIVF 73
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSE 124
LL +I I + I+ SDTA+G+ L V+ GV S
Sbjct: 74 --GLLASILITYIKSNSIIK---SDTAIGITFSSFLALGVILIGVAKS----------ST 118
Query: 125 SIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYL 184
+ L G I + D+ + + G+ V L++ +R L SFDP +S G V++Y
Sbjct: 119 DLFHILFGNILAVQDQDMWMTIGVGVTVLLVICLLFRPLLLTSFDPVLAQSMGVRVKIYH 178
Query: 185 MILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAST 244
+L L+ + +++VG I + + + P A A A + ++ +S L +
Sbjct: 179 YLLMVLLTLVSVTAMQSVGTILIVAMLITPAATAYLYANSLWSMMLLSSSLGALASILGL 238
Query: 245 FLGYYFDIPPSGLATILLATIY 266
F+GY +I G +L + ++
Sbjct: 239 FIGYSLNI-AVGSCIVLTSAVF 259
>pir||G83344 probable permease of ABC transporter PA2409 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948453|gb|AAG05797.1|AE004668_7 (AE004668) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 301
Score = 89.7 bits (219), Expect = 3e-17
Identities = 75/275 (27%), Positives = 130/275 (47%), Gaps = 19/275 (6%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIF-GNLSLI 63
+++ A LA L++G +LG L L+ +K AF + A HA L G +G++LG + G +
Sbjct: 29 FVVNALLAGLLIGPVLGGLGTLVVVKRFAFFSEAVGHAALTGVAIGILLGEPYTGPYGSL 88
Query: 64 FWISLLTAIAIVIGIAEMEIR---GYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
F LL G+ +R G + DT +GV V L L V+A +
Sbjct: 89 FGYCLL------FGVLLNYLRNRTGLAPDTLIGVFLSVSLALGAS----LLLVLAGKINV 138
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
+ E++ L G + + +DL +L ++V + + Y + SF+P+ G V
Sbjct: 139 HILENV---LFGSVLTVNGHDLAVLAAVAVLVPCLALPLYNRIMLASFNPQLAAVRGVAV 195
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
+ + LV + VK +G I + L V+P A A +++ ++ +++ +
Sbjct: 196 KSLDYLFVALVTLVTVAAVKVIGAILVGALLVIPAAAARLVSQSLKGFFWLAVLIATVST 255
Query: 241 VASTFLGYYFDIP-PSGLATILLATI-YGALALGR 273
+A L FD+P PSG A IL+A + +G A+ R
Sbjct: 256 LAGILLPIMFDLPIPSGAAIILVAGLAFGLAAIAR 290
>sp|P73087|YK45_SYNY3 HYPOTHETICAL 30.4 KD PROTEIN SLR2045 >gi|7447906|pir||S75198
hypothetical protein slr2045 - Synechocystis sp. (strain
PCC 6803) >gi|1652188|dbj|BAA17112.1| (D90903)
hypothetical protein [Synechocystis sp.]
Length = 281
Score = 89.3 bits (218), Expect = 5e-17
Identities = 72/270 (26%), Positives = 127/270 (46%), Gaps = 19/270 (7%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
E++ A +ASL+V GL+ I + + F++ HA G LG F L
Sbjct: 25 EFMQNAIVASLLVSLACGLIGSFIVINRMVFISGGVAHAAYGGIGLGYYFA--FNPLWGA 82
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVM--AGVIAGLTVLGFGVLYKVMASRPYFA 121
F SL+ A+A+ + + R SDT +GVM G+ G+ ++ YK
Sbjct: 83 FVFSLVMALAMGWVARKYQQR---SDTLIGVMWALGMAIGIMLIDLTKGYKA-------- 131
Query: 122 LSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVR 181
+ SYL G I + +L L+ +++ +++ Y++FL +SFDP + V
Sbjct: 132 ---DVASYLFGSILTVPRQELWLMAGLDMLIIILLFLLYKEFLAISFDPVYATTRNLPVD 188
Query: 182 LYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQV 241
+ + L + ++++ VGLI + L +P AIA R + +++A++ GL +
Sbjct: 189 ILYLTLVAAIALTVVMVMQLVGLIMVIALLSIPAAIAGQYVRDVPQMMAVASGLGMVFCG 248
Query: 242 ASTFLGYYFDIPPSGLATILLATIYGALAL 271
L Y F++ SG IL+A+I ++L
Sbjct: 249 VGLALSYSFNL-SSGATIILVASIAYLISL 277
>dbj|BAB05114.1| (AP001511) ABC transporter (permease) [Bacillus halodurans]
Length = 287
Score = 88.9 bits (217), Expect = 6e-17
Identities = 59/276 (21%), Positives = 127/276 (45%), Gaps = 12/276 (4%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILG---LIFGNL 60
E+L AF +M+G L LL + ++ +A + A H L G +++ +F +
Sbjct: 9 EFLQNAFYTGVMIGCLAPLLGVFLVVRRMALIADALSHITLSGIAFSLLISNYAALFLFV 68
Query: 61 SLIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
+ ++ + + + ++ ++ + + A+ + +++G LG VL+ +A
Sbjct: 69 NPLYMGIVFSVVGSLLIEKLRQVYKFYQEIAIPI---ILSG--GLGLSVLFLSLAD---- 119
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
+ +++YL G + ++ +DL ++ ++V ++++ FY++ +LSFD E G
Sbjct: 120 GFNNDLMNYLFGSVIAVSRSDLWTILFITIVVIIVLVLFYKELFFLSFDEEQAVVSGIQR 179
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
R I +V + ++ VG++ + L LP A AM A+ +++ S+
Sbjct: 180 RFVHFIFIVMVALVIAASMRIVGILLVSSLMTLPVAAAMRFAKGFKQMFVYSILFGEVAV 239
Query: 241 VASTFLGYYFDIPPSGLATILLATIYGALALGRKVA 276
+ YY D+ P G +L I +G+K A
Sbjct: 240 IGGLISAYYLDLAPGGTIVMLAVLILVGSIIGKKAA 275
>pir||E69180 conserved hypothetical protein MTH606 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621686|gb|AAB85112.1| (AE000842) manganese
transport system membrane protein [Methanobacterium
thermoautotrophicum]
Length = 269
Score = 88.2 bits (215), Expect = 1e-16
Identities = 62/268 (23%), Positives = 124/268 (46%), Gaps = 18/268 (6%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
+++ A +A+++V G + + K I ++ HA G LG LG+ ++
Sbjct: 11 QFMRNAAVAAILVSIACGAVGSYVVTKRIVSISGGISHAAFGGVGLGYFLGVNPITSAIP 70
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVM--AGVIAGLTVLGFGVLYKVMASRPYFA 121
F + A A+ +G R S DTA+GV+ AG+ G+ + Y
Sbjct: 71 FTV----AAALTMGAVTRRTR-ISEDTAIGVLWSAGMALGILFINLSPGY---------- 115
Query: 122 LSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVR 181
+ + SYL G I ++ DL +++ LI+ + F R+F+ + FD E E G V
Sbjct: 116 -APDLFSYLFGNILMVDNGDLWTMLVLDLIIISSALLFNREFVAICFDEEYAEVLGVPVD 174
Query: 182 LYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQV 241
+ + L LV +++K G+I + L +P A+A + + +++ + + + +
Sbjct: 175 AFYLYLLVLVAISVVVLIKAAGIILVMALLTIPAALAKDFSSDMADIMVKASAIGIITAL 234
Query: 242 ASTFLGYYFDIPPSGLATILLATIYGAL 269
A ++ Y F++ + ++L ++GA+
Sbjct: 235 AGLWISYIFNVSSGAVIVLVLTALFGAV 262
>sp|P42362|P29K_STRPN 29 KD MEMBRANE PROTEIN IN PSAA 5'REGION (ORF1)
>gi|393268|gb|AAA16797.1| (L19055) 29-kiloDalton protein
[Streptococcus pneumoniae]
Length = 278
Score = 86.6 bits (211), Expect = 3e-16
Identities = 69/263 (26%), Positives = 124/263 (46%), Gaps = 20/263 (7%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
+L A + ++ +G + G + I L+G++ + A HA+L G L ILG+ F ++ F
Sbjct: 14 FLQNALITAIAIGIVAGAVGCFIILRGMSLMGDAISHAVLPGVALSFILGINFFIGAIAF 73
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSE 124
LL +I I + I+ SDTA+G ++ L + + A S
Sbjct: 74 --GLLASILITYIKSNSIIK---SDTAMGYLS-------------LPRPRSHSDRVAKSS 115
Query: 125 S-IVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
+ + L G I + D+ + + G+ V L+++ +R L SFDP +S G V+LY
Sbjct: 116 TDLFHILFGNILAVQDQDMWVTIGVGVAVLLVIVLLFRPLLLTSFDPVLAQSMGVRVKLY 175
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
+L L+ + +++VG I + + + P A A A + ++ +S GL +
Sbjct: 176 HYLLMVLLTLVSVTAMQSVGTILIAAMLITPAATAYLYANSLWSMMLLSSGLGALASILG 235
Query: 244 TFLGYYFDIPPSGLATILLATIY 266
F+GY F+I G +L + I+
Sbjct: 236 LFIGYSFNI-AVGSCIVLTSAIF 257
>gb|AAD56938.1|AF180520_3 (AF180520) integral membrane protein MtsC [Streptococcus pyogenes]
Length = 284
Score = 85.8 bits (209), Expect = 5e-16
Identities = 66/266 (24%), Positives = 120/266 (44%), Gaps = 15/266 (5%)
Query: 1 MIEEYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNL 60
M +L A + ++++G + G + I L+ ++ + A HA+L G L ILG+ F
Sbjct: 10 MSYHFLQNALITAVVIGIVSGAVGCFIILRSMSLMGDAISHAVLPGVALSFILGVNFFIG 69
Query: 61 SLIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
++IF LL ++ I I+G DTA+G+ L V+ GV
Sbjct: 70 AIIF--GLLASVIITYIKENSVIKG---DTAIGITFSSFLALGVILIGVANS-------- 116
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
S + L G I + +D + + + V +++ F+++ L SFDP +S G V
Sbjct: 117 --STDLFHILFGNILAVQDSDKWITIGVSIFVLVVISLFFKELLLTSFDPILAKSMGVKV 174
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
Y +L L+ + +++VG I + L + P A A A ++ ++ +S L
Sbjct: 175 NAYHYLLMVLLTLVAVTAMQSVGTILIVALLITPAATAYLYANSLKVMLVMSSLLGALAS 234
Query: 241 VASTFLGYYFDIPPSGLATILLATIY 266
V +LGY F++ + A ++
Sbjct: 235 VLGLYLGYTFNVAAGSSIVLTSAMMF 260
>pir||T46755 membrane protein adcB [imported] - Streptococcus pneumoniae
>gi|3758894|emb|CAA96187.1| (Z71552) AdcB protein
[Streptococcus pneumoniae]
Length = 268
Score = 83.5 bits (203), Expect = 3e-15
Identities = 59/271 (21%), Positives = 119/271 (43%), Gaps = 13/271 (4%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
+++ RAFLA + + +L + L+ + ++ H L G G++LG+
Sbjct: 8 DFIQRAFLAVIAMSLFSPVLGTFLILRRQSLMSDTLSHVSLSGVAFGLVLGISPT----- 62
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
+S + + I E Y S +G + GL V ++ S+ + S
Sbjct: 63 --VSTIAIVLIAAVFLEYLRTVYKSFMEIGTAILMSTGLAVS------LIVMSKGKSSSS 114
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
S+ YL G I I+ ++ L + +V ++ F R L+FD + G VR
Sbjct: 115 MSLDQYLFGSIVTISEEQVISLFVIAAVVLILTFLFLRPMYILTFDEDTAFVDGLPVRTM 174
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
++ + G L++ G + + + VLP +IA+ + + + ++ ++ + VA
Sbjct: 175 SILFNMVTGVAIALMIPAAGALLVSTIMVLPASIALRLGKNFKSVMLLASAIGFLGMVAG 234
Query: 244 TFLGYYFDIPPSGLATILLATIYGALALGRK 274
++ YY + P S TI+ T++ ++L R+
Sbjct: 235 LYISYYAETPASASITIIFVTVFILISLVRR 265
>gb|AAD41068.1|AF128999_4 (AF128999) SitD [Salmonella typhimurium]
Length = 282
Score = 83.5 bits (203), Expect = 3e-15
Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 15/263 (5%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
++++ A + S++V LLS + LKG A + A HA+ G VL I+G+ L++
Sbjct: 13 DFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGI---PLAIG 69
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
+I+ L AI G + R DT +G+ V +G+ G VLY + S +
Sbjct: 70 AFIAGLFC-AIATGYLDDNSR-IKRDTVMGI---VFSGMFGAGL-VLYVSIQSEVH---- 119
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
+ L G++ ++ D++ + L + LI+ ++D L +FDP ++ G N L
Sbjct: 120 --LDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLHAFDPHQAKASGLNTTLL 177
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
L ++ +K+VG+I L + PGAIA+ + RR + +++ L++ A
Sbjct: 178 HYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAG 237
Query: 244 TFLGYYFDIPPSGLATILLATIY 266
+L +Y D P+ +L A ++
Sbjct: 238 VYLSFYLDSAPAPTIVVLFAIVF 260
>gi|11467415 putative protein of 299 amino acids [Cyanophora paradoxa]
>gi|1351805|sp|P31606|YCXC_CYAPA HYPOTHETICAL 32.8 KD
PROTEIN IN YCF23-APCF INTERGENIC REGION (ORF299)
>gi|7447910|pir||T06960 probable membrane protein -
Cyanophora paradoxa cyanelle >gi|1016216|gb|AAA81303.1|
(U30821) putative protein of 299 amino acids [Cyanophora
paradoxa]
Length = 299
Score = 82.7 bits (201), Expect = 4e-15
Identities = 69/268 (25%), Positives = 118/268 (43%), Gaps = 15/268 (5%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
++ RAF+ L+ L G++ + L+ + L+ A H++L G + G+ LIF
Sbjct: 32 FMQRAFVIGLIAALLAGIVGSFLMLQRLTLLSDAISHSVLPGLAIAFSFGI-----PLIF 86
Query: 65 WISLLTAIA-IVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
L + I+ I+I E R DTA+G++ GL +L V+ K
Sbjct: 87 GALLASIISVIIINWIRTESR-LKEDTAIGIVFASFFGLGILLISVIQKEN--------K 137
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
+ +L G I IT DL I I+ L I+ YR +FDP ++ G +
Sbjct: 138 VDLNHFLFGNILGITSEDLQNTSIILAIILLFFISCYRQLKCYTFDPIMAQTIGLPINFL 197
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
LV + +K +G+I + L V PGA + I + + ++ S + ++ +
Sbjct: 198 QSTFLILVALTIIVSMKAIGVILVLALLVTPGATGLLIGKSLEYVILTSSIIGVSCSFSG 257
Query: 244 TFLGYYFDIPPSGLATILLATIYGALAL 271
L Y F+IPP ++ + I+ L L
Sbjct: 258 MLLSYLFNIPPGPTIVLITSLIFFILFL 285
>sp|P44691|ZNUB_HAEIN HIGH-AFFINITY ZINC UPTAKE SYSTEM MEMBRANE PROTEIN ZNUB
>gi|1074217|pir||A64066 probable membrane protein HI0407
- Haemophilus influenzae (strain Rd KW20)
>gi|1573380|gb|AAC22066.1| (U32724) conserved
hypothetical integral membrane protein [Haemophilus
influenzae Rd]
Length = 261
Score = 81.5 bits (198), Expect = 1e-14
Identities = 64/271 (23%), Positives = 125/271 (45%), Gaps = 15/271 (5%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
E L A L +++ + L + + +A+ H+ L G LG+ L + I
Sbjct: 3 EILFPALLTGIVLSLITAPLGVFVVWRKMAYFGDTLSHSALLGVALGIFLQV--NPYIAI 60
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
++L+ AIA+V + + +S DT +G++A L V+ G+L V
Sbjct: 61 VVLTLILAIAMVWLESNTQ---FSIDTLLGIIAHSCLSLGVVTVGLLRNVRVD------- 110
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
+++YL G++ I + DL+ + IG +IV +I F++ L + PE + G N++
Sbjct: 111 --LMNYLFGDLLAINYTDLIYIGIGVIIVLSTLIYFWQSLLSTTVSPELAQVEGINIKKM 168
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
IL L L +K VG + + L ++P A A AR +V ++ +++ +
Sbjct: 169 RFILMILTALTIALSMKFVGALIITSLLIIPAATARRFARTPESMVGWAIIMSMLSIIGG 228
Query: 244 TFLGYYFDIPPSGLATILLATIYGALALGRK 274
L ++D +G + ++ + L+L ++
Sbjct: 229 LILSAFYD-TAAGPSVVICSAFLFVLSLFKR 258
>pir||G75293 probable manganese ABC transporter, permease protein - Deinococcus
radiodurans (strain R1)
>gi|6460090|gb|AAF11829.1|AE002060_8 (AE002060)
manganese ABC transporter, permease protein, putative
[Deinococcus radiodurans]
Length = 268
Score = 80.0 bits (194), Expect = 3e-14
Identities = 76/274 (27%), Positives = 128/274 (45%), Gaps = 27/274 (9%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
++ +RA LA +V L L+ + L+G++++ A HA+L G V +L GNL L
Sbjct: 11 DFFVRALLAVSLVSILCALIGAWVVLRGLSYIGDAMSHAVLPGIVSAFLLK---GNLLLG 67
Query: 64 FWISLLTAIAIVIGIAEMEIR-GYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFAL 122
+ + A+ +GI + R G D+A+G+ V G+ LG +L + P F
Sbjct: 68 ---AAIAAVLTALGIGWIGRRSGLKQDSAIGI---VFVGMFALGIVLLSRA----PTF-- 115
Query: 123 SESIVSYLTGEIFLITFNDL-----LLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHG 177
+ + ++L G +T DL + L +GGL+ A ++ L SFDP + G
Sbjct: 116 TSDLSNFLIGNPLGVTPADLWGALAVTLGVGGLLT-----AIQKELLLASFDPTEARTVG 170
Query: 178 GNVRLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTL 237
V +L L+G + L V+ VG L + A A ++R +R ++ ++ L +
Sbjct: 171 LPVTRLNNLLLVLIGLVVVLTVQLVGTTLSVSLLITSSAAARLLSRSLRTMMLLAAALGI 230
Query: 238 TIQVASTFLGYYFDIPPSGLATILLATIYGALAL 271
V+ + YY D P G +L+ T LAL
Sbjct: 231 LGGVSGLYASYYLDTAP-GATIVLVNTAIFLLAL 263
>sp|P44660|Y359_HAEIN HYPOTHETICAL PROTEIN HI0359 >gi|1074369|pir||G64149 hypothetical
protein HI0359 - Haemophilus influenzae (strain Rd KW20)
>gi|1573327|gb|AAC22018.1| (U32720) iron (chelated) ABC
transporter, permease protein (yfeD) [Haemophilus
influenzae Rd]
Length = 271
Score = 79.6 bits (193), Expect = 4e-14
Identities = 63/271 (23%), Positives = 124/271 (45%), Gaps = 22/271 (8%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILG--LIFGNLS 61
E++ A L +L+V + LLS + LKG + + A HA+L G VL + G L G
Sbjct: 12 EFMQNALLTALIVSIICALLSCYLVLKGWSLMGDAISHAVLPGIVLAYLAGIPLAIG--- 68
Query: 62 LIFWISLLTAIAIVIGIAEM-EIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYF 120
+ + I +G+ + E DTA+G+ V +G+ +G + K+
Sbjct: 69 -----AFFSGIFCSLGVGYLKENSRIKEDTAMGI---VFSGMFAIGLVMFTKIQT----- 115
Query: 121 ALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNV 180
E + L G + ++ +L+ + I+F +++ +DFL FDP G +
Sbjct: 116 --EEHLTHILFGNVLGVSHQELIQSAVISAIIFCLIVFKRKDFLLYCFDPSHARVAGLSP 173
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
++ L L+ ++ VG+I + + + PG A+++ + +++ +++ ++
Sbjct: 174 KILHYGLLILLALTIVSTMQVVGVILVVAMLIAPGITALTLTKSFDKMLWVAIASSIASS 233
Query: 241 VASTFLGYYFDIPPSGLATILLATIYGALAL 271
+ L Y+FD +G ILL + +AL
Sbjct: 234 LIGVILSYHFD-ASTGACIILLQAAFFVIAL 263
>gb|AAC68698.1| (AF097414) EfmB [Enterococcus faecium]
Length = 291
Score = 78.8 bits (191), Expect = 7e-14
Identities = 68/263 (25%), Positives = 122/263 (45%), Gaps = 24/263 (9%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGL--IFGNLS 61
++L A + S++VG G++ I L+G++ + A HA+L G + + G IFG +
Sbjct: 13 QFLQYALVTSMLVGLASGVIGSFIILRGMSLMGDAISHAVLPGVAISYMFGFSYIFGATA 72
Query: 62 LIFWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFA 121
+LTA VIG R +DTA+G+ V + LG ++ Y
Sbjct: 73 F----GMLTAA--VIGFVTQRSR-LKNDTAIGI---VFSSFFALGIILI-------SYAQ 115
Query: 122 LSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVR 181
+ + L G + + +DLLL + IV + + FY++ S DP ++ N
Sbjct: 116 SATDLYHILFGNVLAVRESDLLLTALVSGIVLIFVFFFYKELKITSLDPTMAKAFWLNTW 175
Query: 182 LYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQV 241
L +L F + + + ++TVG I + + + P A A + + +++ + G I +
Sbjct: 176 LIHYLLMFFLTLVAVVSLQTVGTILVIAMLITPAATAYLLTNHLLKMIITAAG----IGM 231
Query: 242 ASTFLGYYFDIPPSGL-ATILLA 263
S +G +F I + ATI+LA
Sbjct: 232 LSAVVGVFFSIVTLAIRATIVLA 254
>gb|AAD09974.1| (AF055088) putative hydrophobic membrane protein; PsaC
[Streptococcus pneumoniae]
Length = 241
Score = 78.4 bits (190), Expect = 9e-14
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 15/237 (6%)
Query: 9 AFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIFWISL 68
A + +++VG + G + I L+G++ + A HA+L G L ILGL F +++F L
Sbjct: 18 ALITAIVVGIVAGAVGCFIILRGMSLMGDAISHAVLPGVALSFILGLDFFIGAIVF--GL 75
Query: 69 LTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSESIVS 128
L AI I I+ SDTA+G+ L ++ GV S +
Sbjct: 76 LAAIIITYIKGNSXIK---SDTAIGITFSSFLALGIILIGVAKS----------STDLFH 122
Query: 129 YLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYLMILY 188
L G I + D+ + + G + L++ F++ L SFD ++ G V Y +L
Sbjct: 123 ILFGNILAVQDTDMFITMGVGAAILLLIWIFFKQLLITSFDELLAKAMGMPVNFYHYLLM 182
Query: 189 FLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVASTF 245
L+ + +++VG I + + + P A A A ++ ++ +S L +Q + +
Sbjct: 183 VLLTLVSVTAMQSVGTILIVAMLITPAATAYLYANSLKSMIFLSSTSELLLQFGTLY 239
>pir||E72415 zinc ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980617|gb|AAD35219.1|AE001698_8
(AE001698) zinc ABC transporter, permease protein
[Thermotoga maritima]
Length = 282
Score = 77.3 bits (187), Expect = 2e-13
Identities = 53/257 (20%), Positives = 106/257 (40%), Gaps = 15/257 (5%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
+L AF+ ++V +L GL+SP++ + + F+ T HA+ G ++G
Sbjct: 29 FLRTAFVGGILVASLSGLVSPIVVFRRMEFIGDGTAHAVFAGLAAATLIGADHR------ 82
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSE 124
I+ TA+ ++ S +A+G++ + V+ F V +
Sbjct: 83 LIAFATALLFAFAVSLFSRSRISESSAIGILLPFFMAVGVVLFSVSGRYQTD-------- 134
Query: 125 SIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYL 184
++ YL G++ L+ D+ + + + ++ + F D Y D + +G L
Sbjct: 135 -VMGYLFGDVLLVNSTDVAITAVVLALSVILTVVFRWDIKYFIVDEKMARFYGIKTDLIR 193
Query: 185 MILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAST 244
++ + VK VG+I L +LPG ++ + L IS+ + + A
Sbjct: 194 FLITSFIAITVVTTVKVVGVILTGALLILPGLVSKIFGKSFWSLTTISVIFSTGVFFAGF 253
Query: 245 FLGYYFDIPPSGLATIL 261
Y D+PP + I+
Sbjct: 254 LTAYTLDLPPGPVIVII 270
>emb|CAB56735.1| (AL121600) ABC transporter protein, integral membrane subunit
[Streptomyces coelicolor A3(2)]
Length = 283
Score = 77.3 bits (187), Expect = 2e-13
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 16/263 (6%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
++ RA ++V + L + L+G+AFL A H LL G L +LG GNL L
Sbjct: 12 FVQRALWGGILVSAICALAGTWVVLRGMAFLGDAMSHGLLPGVALAALLG---GNLLLG- 67
Query: 65 WISLLTAIAIVIGIAEM-EIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
++ +A + G+ + S DT +G++ + +L GV+ +++ FA+
Sbjct: 68 --AVASAAVMAAGVTALGRTPRLSQDTGIGLLF-----VGMLSIGVI--IVSRSQSFAVD 118
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
+ L G++ + DLL+L L+ L+ + +R FL L+FDP + G RL
Sbjct: 119 --LTGILFGDVLAVREQDLLVLGGALLVALLVSVLGHRAFLALAFDPRKAHTLGLRPRLA 176
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
+L L+G VG + + L + P A A+ AR +R ++A++ L +T
Sbjct: 177 HAVLLVLLGLAIVASFHIVGTLLVLGLLIAPPAAALPWARGVRGVMALAALLGVTATFGG 236
Query: 244 TFLGYYFDIPPSGLATILLATIY 266
L ++ + + ++
Sbjct: 237 LLLSWHLSTAAGATVSAVAVALF 259
>pir||A72751 hypothetical protein APE0534 - Aeropyrum pernix (strain K1)
>gi|5104185|dbj|BAA79501.1| (AP000059) 287aa long
hypothetical protein [Aeropyrum pernix]
Length = 287
Score = 76.9 bits (186), Expect = 3e-13
Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 13/251 (5%)
Query: 17 GTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIFWISLLTAIAIVI 76
G G LSP + + + FL A H+ L A LG + + G WISL + ++
Sbjct: 36 GLAYGSLSPTLYSRRLLFLAGAAPHSALAAASLGAVAAALTGVGGA--WISLALGLTLIY 93
Query: 77 GIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSESIVSYLTGEIFL 136
RG DTA ++AG A L + G LY +A R ++S ++ G+ L
Sbjct: 94 AAGYSIYRGVDPDTAAALLAGFTASLGIAG---LY--LAGRTGASISTLVI----GDPLL 144
Query: 137 ITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYLMILYFLVGSIGG 196
+ + L ++ G++ ++ Y+ D E G V Y ++LY ++
Sbjct: 145 ASRTEALAVLALGVLFLATLLLLGDRIAYIGVDREDAMLSGTRVWAYDLLLYTMIALSTV 204
Query: 197 LIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLT-LTIQVASTFLGYYFDIPPS 255
++ VG I VL ++PGA+ + + R R A++ GL V LG IPP+
Sbjct: 205 GLITVVGFILEHVLLLIPGALILPLTRGSR-TAALAGGLAGSAAGVGGLILGGLTGIPPA 263
Query: 256 GLATILLATIY 266
+ ++L Y
Sbjct: 264 AASGLILMLTY 274
>pir||F82959 permease of ABC zinc transporter ZnuB PA5501 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951836|gb|AAG08886.1|AE004962_10 (AE004962)
permease of ABC zinc transporter ZnuB [Pseudomonas
aeruginosa]
Length = 262
Score = 76.1 bits (184), Expect = 4e-13
Identities = 59/266 (22%), Positives = 123/266 (46%), Gaps = 20/266 (7%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
++LL A LA L + + G L + + +A+ HA L G LG +L ++S
Sbjct: 3 DFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALLGVALGFLL-----DVSPT 57
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
+++ + V+ + + + ++DT +G++A L ++ + +V
Sbjct: 58 LAVTVGCVLLAVLLVTLQQRQPLAADTLLGILAHSTLSLGLVTLSFMKEVRVD------- 110
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHG---GNV 180
+++YL G++ ++ +DLL ++ G +V ++ +R L ++ E + G G +
Sbjct: 111 --LMAYLFGDLLAVSASDLLWIIAGSALVLALICFLWRPLLAITVHEELAKVEGLPVGAI 168
Query: 181 RLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
RL LM+L +V ++ +K VG++ + L ++P A A AR ++ + L L
Sbjct: 169 RLALMLLIAIVIAVA---MKIVGVLLITSLLIIPAAAAQRHARSPEQMAVGASLLGLVAV 225
Query: 241 VASTFLGYYFDIPPSGLATILLATIY 266
A L ++ D P + A ++
Sbjct: 226 CAGLALSWFKDTPAGPSIVVSAAGLF 251
>pir||F71667 hypothetical protein RP621 - Rickettsia prowazekii
>gi|3861164|emb|CAA15064.1| (AJ235272) unknown
[Rickettsia prowazekii]
Length = 253
Score = 74.9 bits (181), Expect = 1e-12
Identities = 42/155 (27%), Positives = 80/155 (51%)
Query: 119 YFALSESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGG 178
+ +L +IV L G+I ++FNDL++LV+ + + ++ FY L + + + G
Sbjct: 97 FTSLQNNIVHLLFGDILSVSFNDLIILVVVLITIISFVVYFYNQILLIIINRDIAVIQGL 156
Query: 179 NVRLYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLT 238
V + +I L+ +K VG++ + + ++P IA ++ +++ IS+ ++L
Sbjct: 157 KVNIIELIFLLLLSLSVFAAIKIVGVLMVTAILLIPAMIARFVSYSPSQMIIISIFISLF 216
Query: 239 IQVASTFLGYYFDIPPSGLATILLATIYGALALGR 273
I + F +YFD+P + L IL IY L L R
Sbjct: 217 INFCAAFSSFYFDLPLTPLFIILGTLIYSVLYLKR 251
>sp|P39832|ZNUB_ECOLI HIGH-AFFINITY ZINC UPTAKE SYSTEM MEMBRANE PROTEIN ZNUB
>gi|7447914|pir||C64948 probable membrane protein yebI -
Escherichia coli >gi|1736502|dbj|BAA15667.1| (D90828)
ORF_ID:o336gap#12; similar to [SwissProt Accession
Number P39832] [Escherichia coli]
>gi|1736506|dbj|BAA15670.1| (D90829)
ORF_ID:o336gap#12~similar to [SwissProt Accession Number
P39832] [Escherichia coli] >gi|1788166|gb|AAC74929.1|
(AE000280) orf, hypothetical protein [Escherichia coli
K12]
Length = 261
Score = 73.7 bits (178), Expect = 2e-12
Identities = 64/276 (23%), Positives = 129/276 (46%), Gaps = 21/276 (7%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
E L +LA +M+ G L + + +++ HA L G G++L +
Sbjct: 3 ELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVN------P 56
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSS-DTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFAL 122
F+ + + + G+ +E R + DT +G+MA + L G++ + S +
Sbjct: 57 FYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAH-----SALSLGLVVVSLMSN----I 107
Query: 123 SESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRL 182
+++YL G++ +T DL+ + IG +IV I+ +R+ L ++ P+ G ++
Sbjct: 108 RVDLMAYLFGDLLAVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQR 167
Query: 183 YLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIREL--VAISLGLTLTIQ 240
++L + G+ +K VG + + L ++P A A AR ++ VA+ +G+ + +
Sbjct: 168 VKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGM-VAVT 226
Query: 241 VASTFLGYYFDIPPSGLATILLATIYGALALGRKVA 276
TF Y P+G + +L A + L++ +K A
Sbjct: 227 GGLTFSAVY--DTPAGPSVVLCAALLFILSMMKKQA 260
>sp|Q56954|YFEC_YERPE CHELATED IRON TRANSPORT SYSTEM MEMBRANE PROTEIN YFEC
>gi|1245466|gb|AAC46149.1| (U50597) YfeC [Yersinia
pestis]
Length = 294
Score = 73.0 bits (176), Expect = 4e-12
Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 23/266 (8%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
Y+++A S +VG + LS + LKG + + A H+++ G LG F + F
Sbjct: 13 YMVKAIWVSAIVGAVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALG--FPYAAGAF 70
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALSE 124
+ +L A+A+ + I D +G + F V +++ P S
Sbjct: 71 FTGMLAALAMTL---VRHITRLREDAIIGFIFSTF-------FAVGLLIVSLNP---TSV 117
Query: 125 SIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY- 183
++ S + G I I D+L + I L+ F+I+ ++D L + FD ESH ++ L
Sbjct: 118 NVQSIIFGNILGIADEDVLQVEIIILVSFVILCLIWKDLLAVFFD----ESHAMSIGLSP 173
Query: 184 --LMILYF-LVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQ 240
L IL+F L+ + ++TVG I + + V PGA A + R L+ I++ +
Sbjct: 174 LRLKILFFTLLSACTVAALQTVGAILVIAMVVTPGATAYLLTDRFGRLLIIAIAIGAITS 233
Query: 241 VASTFLGYYFDIPPSGLATILLATIY 266
+L +Y D G+ L ++
Sbjct: 234 AFGAYLSFYLDGATGGVIVTLQTLVF 259
>pir||C69756 conserved hypothetical protein yceA - Bacillus subtilis
>gi|2415738|dbj|BAA22248.1| (AB000617) YceA [Bacillus
subtilis] >gi|2632573|emb|CAB12081.1| (Z99105) similar
to hypothetical proteins [Bacillus subtilis]
Length = 280
Score = 73.0 bits (176), Expect = 4e-12
Identities = 62/262 (23%), Positives = 109/262 (40%), Gaps = 13/262 (4%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
E++ RAFLA M+ + +L + L+ A + H L G +G L + I
Sbjct: 7 EFMRRAFLAGGMIAVMAPILGVYLVLRRQALMADTLSHISLSGVAIGFFLS------TNI 60
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
S++ IGI M R Y + + V + + AGL+ F + S +
Sbjct: 61 TAASIVVVTIGAIGIEYMR-RAYRTYSEVSIAILMAAGLSFAMF------LISLSKGTAN 113
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
SI YL G + + + ++ I L++ L I R L+FD ++ G N +
Sbjct: 114 MSIDQYLFGSLVTVNQQQVYIISIITLLILLYFIVLRRPLYLLTFDEATAKTSGINTNVL 173
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
+ + G +I+ +G++ + L VLP A A+ IA+ + ++ ++L
Sbjct: 174 SLSFSIVTGLAISVIIPIIGVLLVSALLVLPAAFAIRIAKGFNMVFITAILISLFSVFTG 233
Query: 244 TFLGYYFDIPPSGLATILLATI 265
Y PP T+LL +
Sbjct: 234 LTSSYQLGTPPGPSITLLLIVL 255
>emb|CAB69728.1| (AL137166) putative metal transport ABC transporter [Streptomyces
coelicolor A3(2)]
Length = 300
Score = 71.8 bits (173), Expect = 9e-12
Identities = 68/268 (25%), Positives = 118/268 (43%), Gaps = 18/268 (6%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
++ RA LA+++VG + + + A + H + G LG +L
Sbjct: 8 FMQRALLAAVLVGITAPAIGIYLVQRRQALMGDGIGHVAMTGVGLGFLLSWS------PV 61
Query: 65 WISLLTAIAIVIGIAEME-IRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
W++ L + V+G ME IR Y +A + G + GV++ +A +
Sbjct: 62 WMATLVS---VLGAVLMELIRWYGKTRGDIALAMLFYG--GMAGGVMFINLAPG---GSN 113
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
++ SYL G + ++ +D+ + + V L+ + R +S D E G VR
Sbjct: 114 ANLTSYLFGSLSTVSESDVTAICVLAAFVVLVTVGLRRQLFAVSQDEEFARVTGLPVRAL 173
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
++ + ++ VGL+ + L V+P A A + R AIS+ L +++ +
Sbjct: 174 NLLTAVTAAVTVTVAMRVVGLLLVSALMVVPVAAAQQLTRSFAATFAISVALGVSVTIGG 233
Query: 244 TFLGYYFDIPPSGLATILLATIYGALAL 271
T YY D+PP ATI+L TI GA L
Sbjct: 234 TVTSYYQDVPPG--ATIVLLTI-GAFIL 258
>pir||E81431 ABC transporter integral membrane protein Cj0141c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967635|emb|CAB72625.1| (AL139074) ABC transporter
integral membrane protein [Campylobacter jejuni]
Length = 267
Score = 69.9 bits (168), Expect = 3e-11
Identities = 57/261 (21%), Positives = 112/261 (42%), Gaps = 19/261 (7%)
Query: 5 YLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIF 64
+ A L +++V G++ L+ + + + H G + L + IF
Sbjct: 9 FFQNALLGAILVSIACGIIGTLVMINRLFSMAGGITHGAFGGIGIAFYFSLPILLSTGIF 68
Query: 65 WISLLTAIAIVIGIAEMEIRGYSSDTAVGVM--AGVIAGLTVLGFGVLYKVMASRPYFAL 122
+ L +A + E + SD+ + V+ G+ G+ ++ Y
Sbjct: 69 TLFLAFLVAFLAKRYE-----HRSDSIIAVIWAFGMAVGIILIDLSPSYNT--------- 114
Query: 123 SESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRL 182
+++YL G I + DL L+ + ++ L++ FYR F LSFD E + G N
Sbjct: 115 --DLMAYLFGSILAVGTQDLWLMALVDSVMVLLIFLFYRQFEALSFDVEFTKVRGINTSF 172
Query: 183 YLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVA 242
+ +L L+ + ++ VGLI + L +P IA + +R+ ++ ++ L++ +
Sbjct: 173 FHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFIMILASFLSMIFCIL 232
Query: 243 STFLGYYFDIPPSGLATILLA 263
L YY ++ SG I +A
Sbjct: 233 GLILSYYLNL-SSGACIIAIA 252
>sp|P44661|Y360_HAEIN HYPOTHETICAL PROTEIN HI0360 >gi|1074218|pir||E64063 hypothetical
protein HI0360 - Haemophilus influenzae (strain Rd KW20)
>gi|1573328|gb|AAC22019.1| (U32720) iron (chelated) ABC
transporter, permease protein (yfeC) [Haemophilus
influenzae Rd]
Length = 282
Score = 69.1 bits (166), Expect = 6e-11
Identities = 58/265 (21%), Positives = 119/265 (44%), Gaps = 19/265 (7%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
+Y+L+A + S VG + LS + LKG + + A H+++ G + L + +
Sbjct: 12 DYMLKAMILSTAVGGICAFLSSYLMLKGWSLIGDALSHSVVPGVAIAYAFALPYALGA-- 69
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
F+ +L A++I + I D +G + L +L +++ P +
Sbjct: 70 FFAGILAALSI---LWIKSISKLKEDAVIGFIFSTFFALGLL-------IVSLNP---TA 116
Query: 124 ESIVSYLTGEIFLITFNDL--LLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVR 181
++ + + G I I D+ + ++IG +V L++ F++D L + FD + G +
Sbjct: 117 VNVQNIILGNILGIADEDIYQVAIIIGVCLVLLLL--FWKDLLLIFFDETQAITVGLSPL 174
Query: 182 LYLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQV 241
Y ++ + L+ + ++TVG I + + V PGA A + + + L I++ L
Sbjct: 175 FYKILFFTLLSACVVAALQTVGAILVIAMVVTPGATAYLLTDKFKTLSIIAIILGAVTSF 234
Query: 242 ASTFLGYYFDIPPSGLATILLATIY 266
++ YY D G+ L ++
Sbjct: 235 VGVYISYYLDGATGGVIVTLQTLLF 259
>pir||D70355 conserved hypothetical protein aq_621 - Aquifex aeolicus
>gi|2983236|gb|AAC06833.1| (AE000698) hypothetical
protein [Aquifex aeolicus]
Length = 243
Score = 69.1 bits (166), Expect = 6e-11
Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 18/249 (7%)
Query: 29 LKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIFWISLLTAIAIVIGIAEMEIRGYSS 88
L+ AFL HA G L +LG ++IF I + + + + +
Sbjct: 8 LRRYAFLGAGLSHAAFGGIALSFLLGTDVYLTTVIFTILVANFVQFLT-----QTKKVPG 62
Query: 89 DTAVGVM--AGVIAGLTVLGFGVLYKVMASRPYFALSESIVSYLTGEIFLITFNDLLLLV 146
DTA+ V+ +G+ +T+LG E++ SYL G I ++T +L
Sbjct: 63 DTAIAVIFSSGMALAVTILGI-----------VRGFGENLFSYLFGNILMVTKEELFYTA 111
Query: 147 IGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLYLMILYFLVGSIGGLIVKTVGLIT 206
LI L + FY+ L +F E + G N+ L + +K VG+I
Sbjct: 112 GVFLITLLFIGIFYKKLLLTTFSEEMAKVKGINISFLNYSFVTLTALVVVASIKAVGVIL 171
Query: 207 LQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVASTFLGYYFDIPPSGLATILLATIY 266
L V+P + +A + IS ++ V ++ + +D+PPSG + ++
Sbjct: 172 ASSLVVIPAMSGLILAGSFLSSLIISSVVSTLSVVLGIYISFNYDVPPSGSIVGIAILLF 231
Query: 267 GALALGRKV 275
A L RK+
Sbjct: 232 LASFLLRKL 240
>pir||H72064 ABC transporter, permease protein CP0209 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4376834|gb|AAD18683.1| (AE001639) (Metal Transport
Protein) [Chlamydophila pneumoniae CWL029]
>gi|7189139|gb|AAF38080.1| (AE002181) ABC transporter,
permease protein [Chlamydophila pneumoniae AR39]
>gi|8978914|dbj|BAA98749.1| (AP002547) metal transport
protein [Chlamydophila pneumoniae J138]
Length = 293
Score = 69.1 bits (166), Expect = 6e-11
Identities = 63/266 (23%), Positives = 129/266 (47%), Gaps = 14/266 (5%)
Query: 6 LLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLIFW 65
LL FLA+L G++ I +K I ++ + HA+L G +G+ L + + L L F+
Sbjct: 15 LLPTFLAALGASVAGGVMGTYIVVKRIVSISGSISHAILGG--IGLTLWIQY-KLHLSFF 71
Query: 66 I---SLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFAL 122
+++ AI + + I ++ ++ + ++ M + + G+++ ++ P F
Sbjct: 72 PMYGAIVGAIFLALCIGKIHLKYQEREDSLIAMIWSVG----MAIGIIF--ISRLPTF-- 123
Query: 123 SESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRL 182
+ ++++L G I +T +DL L I L+V I++ + FL L FD + +V+L
Sbjct: 124 NGELINFLFGNILWVTPSDLYSLGIFDLLVLGIVVLCHTRFLALCFDERYTALNHCSVQL 183
Query: 183 YLMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVA 242
+ +L L +++ +G I + + VLP AIA + ++ ++ IS+ L + +
Sbjct: 184 WYFLLLVLTAITIVMLIYVMGTILMLSMLVLPVAIACRFSYKMTRIMFISVLLNILCSFS 243
Query: 243 STFLGYYFDIPPSGLATILLATIYGA 268
+ Y D P ++L+ Y A
Sbjct: 244 GICIAYCLDFPVGPTISLLMGLGYTA 269
>gb|AAD41067.1|AF128999_3 (AF128999) SitC [Salmonella typhimurium]
Length = 286
Score = 68.3 bits (164), Expect = 1e-10
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 15/263 (5%)
Query: 4 EYLLRAFLASLMVGTLLGLLSPLINLKGIAFLTHATFHALLFGAVLGMILGLIFGNLSLI 63
+Y+L A S MVG L LS + LKG + + A H+++ G +LGL F SL
Sbjct: 11 QYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAWMLGLPF---SLG 67
Query: 64 FWISLLTAIAIVIGIAEMEIRGYSSDTAVGVMAGVIAGLTVLGFGVLYKVMASRPYFALS 123
++S A ++ + + D +G++ FGV +++ P +S
Sbjct: 68 AFLSGGLAAGSMLFLNQRS--RLKEDAIIGLIFSSF-------FGVGLFMVSLNP---MS 115
Query: 124 ESIVSYLTGEIFLITFNDLLLLVIGGLIVFLIMIAFYRDFLYLSFDPEGLESHGGNVRLY 183
+I + + G + I D+ L I G + I++ ++D + + FD S G N
Sbjct: 116 VNIQTIILGNVLAIAPADIAQLAIIGAVSLTILLLKWKDLMVVFFDETHARSIGLNPGRL 175
Query: 184 LMILYFLVGSIGGLIVKTVGLITLQVLAVLPGAIAMSIARRIRELVAISLGLTLTIQVAS 243
++ + L+ ++TVG + L V PGA A + R L+ I++ +
Sbjct: 176 KLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVVIGSLTSFLG 235
Query: 244 TFLGYYFDIPPSGLATILLATIY 266
+L Y+ D G+ ++ ++
Sbjct: 236 AWLSYWLDGATGGIIVVMQTLLF 258
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.149 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89472663
Number of Sequences: 2977
Number of extensions: 3538312
Number of successful extensions: 16898
Number of sequences better than 1.0e-10: 40
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 16834
Number of HSP's gapped (non-prelim): 46
length of query: 276
length of database: 189,106,746
effective HSP length: 53
effective length of query: 223
effective length of database: 157,386,935
effective search space: 35097286505
effective search space used: 35097286505
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)