BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0353 496366 496842 159 !not a gene!
         (159 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71045 hypothetical protein PH1649 - Pyrococcus horikoshii ...   133  8e-31

>pir||A71045 hypothetical protein PH1649 - Pyrococcus horikoshii
           >gi|3258078|dbj|BAA30761.1| (AP000006) 111aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 111
           
 Score =  133 bits (332), Expect = 8e-31
 Identities = 71/110 (64%), Positives = 79/110 (71%)

Query: 22  NHIQNGASEGCSPLKLRCQEKLAMNSSSHGMNPMAFIMVISGIKNETMGRTSPEIKYSLR 81
           NH QNGAS GCSPLKLRCQEKL +NSSS G+ P+AFI+ ISG +N   G T+PEI  SLR
Sbjct: 2   NHSQNGASAGCSPLKLRCQEKLPINSSSQGIKPIAFIIGISGTRNAITGSTTPEIMNSLR 61

Query: 82  SFSFSILNQRIGKAKAPLSLVAAAKPSAIPLSLILSRAKKSIKRAMKKAT 131
           S S SIL Q IG   APLS VAAA P  IPL L L   + S+KRA KKAT
Sbjct: 62  SSSLSILAQSIGNTNAPLSFVAAASPKEIPLILSLLIVRNSMKRATKKAT 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.312    0.124    0.336 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49874545
Number of Sequences: 2977
Number of extensions: 1696568
Number of successful extensions: 3163
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3162
Number of HSP's gapped (non-prelim): 1
length of query: 159
length of database: 189,106,746
effective HSP length: 63
effective length of query: 96
effective length of database: 151,402,065
effective search space: 14534598240
effective search space used: 14534598240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 161 (67.1 bits)