BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0359 (PAB0359) DE:Hypothetical protein
(195 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75171 hypothetical protein PAB0359 - Pyrococcus abyssi (st... 399 e-110
pir||B71044 hypothetical protein PH1642 - Pyrococcus horikoshii ... 353 9e-97
sp|Q58292|Y882_METJA HYPOTHETICAL PROTEIN MJ0882 >gi|2128037|pir... 175 3e-43
pir||F72224 conserved hypothetical protein - Thermotoga maritima... 165 3e-40
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannas... 165 4e-40
dbj|BAB03843.1| (AP001507) unknown conserved protein [Bacillus h... 129 2e-29
pir||S59955 hypothetical protein 202 - Staphylococcus aureus >gi... 120 9e-27
sp|P37872|YBXB_BACSU HYPOTHETICAL 22.5 KDA PROTEIN IN RPLL-RPOB ... 117 8e-26
sp|P44453|RSMC_HAEIN RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERA... 93 3e-18
gb|AAK40719.1| Conserved hypothetical protein [Sulfolobus solfat... 89 4e-17
sp|P39406|RSMC_ECOLI RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERA... 82 7e-15
pir||F71181 hypothetical protein PH1731 - Pyrococcus horikoshii ... 73 2e-12
pir||G83066 conserved hypothetical protein PA4627 [imported] - P... 72 4e-12
>pir||A75171 hypothetical protein PAB0359 - Pyrococcus abyssi (strain Orsay)
>gi|5457958|emb|CAB49448.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 195
Score = 399 bits (1013), Expect = e-110
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MGHYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKI 60
MGHYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKI
Sbjct: 1 MGHYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKI 60
Query: 61 LDLGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEGE 120
LDLGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEGE
Sbjct: 61 LDLGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEGE 120
Query: 121 KFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVV 180
KFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVV
Sbjct: 121 KFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVV 180
Query: 181 ELAKGSGYRVYAGIA 195
ELAKGSGYRVYAGIA
Sbjct: 181 ELAKGSGYRVYAGIA 195
>pir||B71044 hypothetical protein PH1642 - Pyrococcus horikoshii
>gi|3258071|dbj|BAA30754.1| (AP000006) 198aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 198
Score = 353 bits (896), Expect = 9e-97
Identities = 170/195 (87%), Positives = 183/195 (93%)
Query: 1 MGHYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKI 60
M HYYSR+ + P+KTK I+VCIRGYCFKFITASGVFSFGKLDRGTELLI+NMILKP WK+
Sbjct: 4 MPHYYSRDQSTPMKTKLIEVCIRGYCFKFITASGVFSFGKLDRGTELLIKNMILKPGWKV 63
Query: 61 LDLGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEGE 120
LDLGCGYG IGIVASRFV YVVMTDINKRAV IARKN+K+N V N EVRLGNLYEPVEGE
Sbjct: 64 LDLGCGYGPIGIVASRFVEYVVMTDINKRAVTIARKNMKLNNVSNGEVRLGNLYEPVEGE 123
Query: 121 KFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVV 180
KF+SIITNPPVHAGKD+LREIVINAPNYLHD GMLQLVIKT+LGAKFIK+LM+DTFTEVV
Sbjct: 124 KFNSIITNPPVHAGKDVLREIVINAPNYLHDDGMLQLVIKTRLGAKFIKELMQDTFTEVV 183
Query: 181 ELAKGSGYRVYAGIA 195
ELAKGSGYRVYAGIA
Sbjct: 184 ELAKGSGYRVYAGIA 198
>sp|Q58292|Y882_METJA HYPOTHETICAL PROTEIN MJ0882 >gi|2128037|pir||B64410 hypothetical
protein homolog MJ0882 - Methanococcus jannaschii
>gi|1499712|gb|AAB98886.1| (U67532) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 197
Score = 175 bits (440), Expect = 3e-43
Identities = 86/190 (45%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Query: 3 HYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKILD 62
HY+S +P K ++ +RG KF T SGVFS+GK+D+GT++L+EN+++ D ILD
Sbjct: 2 HYFSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILD 61
Query: 63 LGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRL--GNLYEPVEGE 120
LGCGYGVIGI + V M DIN+RA+++A++NIK+N + N ++R+ +LYE V+
Sbjct: 62 LGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 121
Query: 121 KFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVV 180
K++ IITNPP+ AGK++L I+ L D G + +VI+TK GAK + MKD F V
Sbjct: 122 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVE 181
Query: 181 ELAKGSGYRV 190
+ GYRV
Sbjct: 182 TVTIKGGYRV 191
>pir||F72224 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982239|gb|AAD36731.1|AE001808_6 (AE001808)
conserved hypothetical protein [Thermotoga maritima]
Length = 210
Score = 165 bits (414), Expect = 3e-40
Identities = 90/195 (46%), Positives = 127/195 (64%), Gaps = 5/195 (2%)
Query: 3 HYYSREPNVPLKTKQIDVCIR-GYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKIL 61
HYY+ EP LK ++ + ++ G+ + F T SGV+S+GK+D+ T++L+EN+ + K+L
Sbjct: 7 HYYTVEPTSKLKVREARLVLKNGHEYIFKTPSGVYSYGKIDKATQVLLENLKVHGK-KVL 65
Query: 62 DLGCGYGVIGIVASRFVN--YVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEG 119
DLGCGYGVIGIV + V M+DINKRAV+ A+ N K + V+ ++R GNLYEP E
Sbjct: 66 DLGCGYGVIGIVLKKEYPDLEVYMSDINKRAVEFAKINAKDHNVE-VDIRWGNLYEPWED 124
Query: 120 EKFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEV 179
KF I+ NPP+ AGK + EIV +AP +L +GG LQ+V G + I+D MK+ F V
Sbjct: 125 MKFDMIVCNPPIVAGKKVWMEIVKSAPEFLEEGGSLQIVAYHNKGGRRIRDFMKEVFGNV 184
Query: 180 VELAKGSGYRVYAGI 194
EL K G RVY +
Sbjct: 185 EELCKTGGIRVYRSV 199
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 165 bits (413), Expect = 4e-40
Identities = 82/188 (43%), Positives = 121/188 (63%), Gaps = 2/188 (1%)
Query: 5 YSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKILDLG 64
+S +P K ++ +RG KF T SGVFS+GK+D+GT++L+EN+++ D ILDLG
Sbjct: 1 FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLG 60
Query: 65 CGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRL--GNLYEPVEGEKF 122
CGYGVIGI + V DIN+RA+++A++NIK+N + N ++R+ +LYE V+ K+
Sbjct: 61 CGYGVIGIALADEVKSTTXADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120
Query: 123 HSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVVEL 182
+ IITNPP+ AGK++L I+ L D G + +VI+TK GAK + KD F V +
Sbjct: 121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYXKDVFGNVETV 180
Query: 183 AKGSGYRV 190
GYRV
Sbjct: 181 TIKGGYRV 188
>dbj|BAB03843.1| (AP001507) unknown conserved protein [Bacillus halodurans]
Length = 201
Score = 129 bits (321), Expect = 2e-29
Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 3/189 (1%)
Query: 3 HYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKP-DWKIL 61
HYYS P V + +RG+ F+F T GVFS ++D G+ LLIE + +L
Sbjct: 4 HYYSANPIVGSDERSWSYTLRGHSFQFTTDRGVFSKQEVDFGSRLLIETFQFPEIEGDVL 63
Query: 62 DLGCGYGVIGIVASRF--VNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEG 119
D+GCGYG IGI +R V M D+N+RA+ +A++N N VKN V +L++ V+
Sbjct: 64 DVGCGYGPIGISLARDGGERSVHMVDVNERAIDLAKRNATANHVKNVVVYRSDLFQQVQD 123
Query: 120 EKFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEV 179
+F +I+TNPP+ AGK ++ ++ +A +YL G L +VI+ K GA D + + + EV
Sbjct: 124 RQFAAIVTNPPIRAGKRVVHQLFEDARDYLLSNGELWIVIQKKQGAPSTLDKLHNLYEEV 183
Query: 180 VELAKGSGY 188
+ K GY
Sbjct: 184 EVVTKKKGY 192
>pir||S59955 hypothetical protein 202 - Staphylococcus aureus
>gi|677850|emb|CAA45511.1| (X64172) hypothetical protein
[Staphylococcus aureus] >gi|1094969|prf||2107219A rpoB
upstream ORF [Staphylococcus aureus]
>gi|1096953|prf||2113202A ORF 202 [Staphylococcus
aureus]
Length = 202
Score = 120 bits (299), Expect = 9e-27
Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 6/200 (3%)
Query: 1 MGHYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILK----P 56
M HYY +P+V ++I + + IT +GVFS K+D G+++L++ + P
Sbjct: 1 MSHYYDEDPSVISNEQRIQYQLNHHKIDLITDNGVFSKDKVDYGSDVLVQTFLKAHPPGP 60
Query: 57 DWKILDLGCGYGVIGIVASRFVNY--VVMTDINKRAVQIARKNIKINGVKNAEVRLGNLY 114
+I D+GCGYG IG++ ++ + + M D+N RA+ + KN K+NG+ N V+ +
Sbjct: 61 SKRIADVGCGYGPIGLMIAKVSPHHSITMLDVNHRALALVEKNKKLNGIDNVIVKESDAL 120
Query: 115 EPVEGEKFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKD 174
VE + F I+TNPP+ AGK+ + I A + L G L +VI+ K G K M +
Sbjct: 121 SAVEDKSFDFILTNPPIRAGKETVHRIFEQALHRLDSNGELFVVIQKKQGMPSAKKRMNE 180
Query: 175 TFTEVVELAKGSGYRVYAGI 194
F V + K GY + I
Sbjct: 181 LFGNVEVVNKDKGYYILRSI 200
>sp|P37872|YBXB_BACSU HYPOTHETICAL 22.5 KDA PROTEIN IN RPLL-RPOB INTERGENIC REGION (P23)
(ORF23) >gi|7449576|pir||F69751 conserved hypothetical
protein ybxB - Bacillus subtilis
>gi|402362|gb|AAB00971.1| (L24376) hypothetical protein
[Bacillus subtilis] >gi|2632373|emb|CAB11882.1| (Z99104)
alternate gene name: ybaA~similar to hypothetical
proteins [Bacillus subtilis]
Length = 201
Score = 117 bits (291), Expect = 8e-26
Identities = 70/193 (36%), Positives = 116/193 (59%), Gaps = 6/193 (3%)
Query: 3 HYYSREPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWK--I 60
HYYS +P+V + +R F F + SGVFS ++D G+ LLI++ +P+ + I
Sbjct: 4 HYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFE-EPEVEGGI 62
Query: 61 LDLGCGYGVIGI-VASRFVNYVV-MTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVE 118
LD+GCGYG IG+ +AS F + + M D+N+RAV+++ +N + NG+ N ++ +L+ V+
Sbjct: 63 LDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQSDLFSNVD 122
Query: 119 G-EKFHSIITNPPVHAGKDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFT 177
+ F SI+TNPP+ AGK ++ I + +L G L +VI+ K GA + +++ F
Sbjct: 123 SAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGELWIVIQKKQGAPSAIEKLEELFD 182
Query: 178 EVVELAKGSGYRV 190
EV + K GY +
Sbjct: 183 EVSVVQKKKGYYI 195
>sp|P44453|RSMC_HAEIN RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE C (RRNA
(GUANINE-N2-)-METHYLTRANSFERASE) (16S RRNA M2G1207
METHYLTRANSFERASE) >gi|1074224|pir||B64140 hypothetical
protein HI0012 - Haemophilus influenzae (strain Rd KW20)
>gi|1572956|gb|AAC21690.1| (U32687) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 330
Score = 92.8 bits (227), Expect = 3e-18
Identities = 62/165 (37%), Positives = 96/165 (57%), Gaps = 11/165 (6%)
Query: 34 GVFSFGKLDRGTELLIENMILKPDWKILDLGCGYGVIG-IVASRFVN-YVVMTDINKRAV 91
GVFS +LD GTELL+ + K K+LDLGCG GVIG ++ R N + MTDI+ A+
Sbjct: 168 GVFSAAELDTGTELLLSTIDNKIKGKVLDLGCGAGVIGSMIKKRTPNAQITMTDIHAMAL 227
Query: 92 QIARKNIKINGVKNAEVRLGNLYEPVEGEKFHSIITNPPVHAGKD----ILREIVINAPN 147
+ ARK + N ++ EV +++ +EG KF II+NPP H G D + E++ A
Sbjct: 228 ESARKTLSENQLQ-GEVYASDVFSDIEG-KFDLIISNPPFHDGIDTAYRAVTELITQAKW 285
Query: 148 YLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVVELAKGSGYRVYA 192
+L+ GG L++V + L +L++ F + LA+ ++VY+
Sbjct: 286 HLNQGGELRIVANSFLP---YPELLRQHFNDYQVLAQTGKFKVYS 327
>gb|AAK40719.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 186
Score = 88.9 bits (217), Expect = 4e-17
Identities = 50/141 (35%), Positives = 89/141 (62%), Gaps = 4/141 (2%)
Query: 22 IRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKILDLGCGYGVIGI-VASRFVNY 80
I G +++ G+FS +LD GT +L+EN+ + + + D+GCGYG IGI +A + N
Sbjct: 11 INGIPLTLLSSPGIFSKKELDLGTRILLENIKVAENGTVADVGCGYGPIGIYLALKNPNL 70
Query: 81 -VVMTDINKRAVQIARKNIKINGVKNAEVRL-GNLYEPVEGE-KFHSIITNPPVHAGKDI 137
V M D+N A+++A+KN K+NGV+N + + ++++ + + KF +I +NPP+ G D
Sbjct: 71 KVYMVDVNYIAIKLAKKNAKLNGVENRTIIVKSDIFDNIPIDVKFTAIYSNPPLSKGVDF 130
Query: 138 LREIVINAPNYLHDGGMLQLV 158
L+++ A + L + G +QL+
Sbjct: 131 LKKLEAEAYDRLVEKGFIQLI 151
>sp|P39406|RSMC_ECOLI RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE C (RRNA
(GUANINE-N2-)-METHYLTRANSFERASE) (16S RRNA M2G1207
METHYLTRANSFERASE) >gi|1361095|pir||S56595 hypothetical
37.6K protein (dnaT-holD intergenic region) -
Escherichia coli >gi|537211|gb|AAA97267.1| (U14003)
ORF_f343b [Escherichia coli] >gi|1790830|gb|AAC77324.1|
(AE000507) putative enzyme [Escherichia coli K12]
Length = 343
Score = 81.5 bits (198), Expect = 7e-15
Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 11/170 (6%)
Query: 31 TASGVFSFGKLDRGTELLIENMILKPDWKILDLGCGYGVIGIVASRFVNYVVMT--DINK 88
T GVFS LD G++LL+ + K+LD+GCG GV+ + +R + +T D++
Sbjct: 171 TLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSA 230
Query: 89 RAVQIARKNIKINGVKNAEVRLGNLYEPVEGEKFHSIITNPPVHAGK----DILREIVIN 144
AV+ +R + NGV+ EV N++ V+G +F II+NPP H G D + ++
Sbjct: 231 PAVEASRATLAANGVE-GEVFASNVFSEVKG-RFDMIISNPPFHDGMQTSLDAAQTLIRG 288
Query: 145 APNYLHDGGMLQLVIKTKLGAKFIKDLMKDTFTEVVELAKGSGYRVYAGI 194
A +L+ GG L++V L D++ +TF +A+ ++VY I
Sbjct: 289 AVRHLNSGGELRIVANAFLP---YPDVLDETFGFHEVIAQTGRFKVYRAI 335
>pir||F71181 hypothetical protein PH1731 - Pyrococcus horikoshii
>gi|3258162|dbj|BAA30845.1| (AP000007) 198aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 198
Score = 73.0 bits (176), Expect = 2e-12
Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 45 TELLIENMI--LKPDWKILDLGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKING 102
T LL E+++ +K D +LD+G G G++ ++A+R +VV DIN++A+ +A KN KING
Sbjct: 23 TFLLAESLLDEVKSDDIVLDVGTGTGILALLAARRARFVVGLDINEKAINLAWKNAKING 82
Query: 103 VKNAEVRLGNLYEPVEGEKFHSIITNPPVHAGKDI 137
+KN L +L+E + G F I+ NPP G++I
Sbjct: 83 IKNVVFILSDLFENIRG-TFDLIVFNPPYLPGEEI 116
>pir||G83066 conserved hypothetical protein PA4627 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950880|gb|AAG08015.1|AE004877_2 (AE004877)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 332
Score = 72.2 bits (174), Expect = 4e-12
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 19/195 (9%)
Query: 8 EPNVPLKTKQIDVCIRGYCFKFITASGVFSFGKLDRGTELLIENMILKPDWKILDLGCGY 67
EP++ ++ + + + ++ GVFS G+LDRG+ LL+ + P +LD GCG
Sbjct: 143 EPDLHALAQRYSLPLADGELQVVSLPGVFSHGRLDRGSALLLGQLQALPGGHLLDFGCGA 202
Query: 68 GVIGIVASRF--VNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYEPVEG--EKFH 123
GV+G V R + + + D++ AV+ +R + NG+ + + ++G +
Sbjct: 203 GVLGAVLKRRYPASRLSLLDVDAFAVESSRLTLAANGLDGEVIAA----DGIDGAPRELA 258
Query: 124 SIITNPPVHAG----KDILREIVINAPNYLHDGGMLQLVIKTKLGAKFIK--DLMKDTFT 177
+I++NPP H G ++ A +L GG L+LV + F+K L++
Sbjct: 259 AIVSNPPFHQGVHTDYQASERLLQRAAEHLAPGGELRLVANS-----FLKYPPLIERHLG 313
Query: 178 EVVELAKGSGYRVYA 192
LA+G G+R+Y+
Sbjct: 314 PCRTLAEGDGFRIYS 328
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72516405
Number of Sequences: 2977
Number of extensions: 2907632
Number of successful extensions: 6824
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6798
Number of HSP's gapped (non-prelim): 13
length of query: 195
length of database: 189,106,746
effective HSP length: 51
effective length of query: 144
effective length of database: 158,583,909
effective search space: 22836082896
effective search space used: 22836082896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)