BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0360 (rps13P) DE:SSU ribosomal protein S13P/S18E
(148 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75171 ssu ribosomal protein s13p/s18e PAB0360 - Pyrococcus... 302 1e-81
sp|O74021|RS13_PYRHO 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440388... 297 4e-80
sp|P54019|RS13_METJA 30S RIBOSOMAL PROTEIN S13P/S18E >gi|2826258... 180 1e-44
pir||F64323 ribosomal protein S18 - Methanococcus jannaschii 180 1e-44
sp|O26141|RS13_METTH 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440389... 170 8e-42
gb|AAK40436.1| SSU ribosomal protein S13AB (rps13AB) [Sulfolobus... 154 4e-37
sp|P95986|RS13_SULSO 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440378... 154 4e-37
pir||T27228 hypothetical protein Y57G11C.16 - Caenorhabditis ele... 142 2e-33
gi|11499866 SSU ribosomal protein S13P (rps13P) [Archaeoglobus f... 142 2e-33
gi|6755368 ribosomal protein S18 [Mus musculus] >gi|133840|sp|P2... 139 1e-32
sp|P48151|RS18_ENTHI 40S RIBOSOMAL PROTEIN S18 >gi|509603|gb|AAD... 139 2e-32
sp|O94754|RS18_SCHPO 40S RIBOSOMAL PROTEIN S18 >gi|7489962|pir||... 138 4e-32
gb|AAA16796.1| (M76762) ribosomal protein [Mus musculus] 137 8e-32
sp|P39470|RS13_SULAC 30S RIBOSOMAL PROTEIN S13P/S18E >gi|629414|... 136 2e-31
sp|P49202|RS18_CHLRE 40S RIBOSOMAL PROTEIN S18 >gi|1076216|pir||... 134 5e-31
sp|P41094|RS18_DROME 40S RIBOSOMAL PROTEIN S18 >gi|349256|gb|AAA... 134 5e-31
sp|P34788|RS18_ARATH 40S RIBOSOMAL PROTEIN S18 >gi|480908|pir||S... 133 9e-31
gi|6320658 Ribosomal protein S18A; Rps18ap [Saccharomyces cerevi... 127 5e-29
sp|Q9YB60|RS13_AERPE 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440391... 122 2e-27
emb|CAC12162.1| (AL445066) probable ribosomal protein S13 [Therm... 120 8e-27
gb|AAF70446.1|AF210641_1 (AF210641) Ke3 [Danio rerio] 116 9e-26
sp|Q00861|RS13_HALMA 30S RIBOSOMAL PROTEIN S13P/S18E (HMAS13) >g... 104 4e-22
pir||T43937 ribosomal protein S13 [similarity] - Halobacterium s... 104 4e-22
emb|CAB46821.1| (AJ388519) Ribosomal protein [Canis familiaris] 99 2e-20
gb|AAD03679.1| (AF081143) ribosomal protein S18 [Cricetulus sp.] 94 6e-19
pir||T41627 ribosomal protein subunit s18 - fission yeast (Schi... 88 6e-17
sp|Q9X1I5|RS13_THEMA 30S RIBOSOMAL PROTEIN S13 >gi|7440396|pir||... 84 9e-16
sp|O51453|RS13_BORBU 30S RIBOSOMAL PROTEIN S13 >gi|7440385|pir||... 80 1e-14
gi|11465761 30S ribosomal protein S13 [Porphyra purpurea] >gi|17... 78 5e-14
sp|O66486|RS13_AQUAE 30S RIBOSOMAL PROTEIN S13 >gi|7440382|pir||... 76 2e-13
sp|Q9Z7S6|RS13_CHLPN 30S RIBOSOMAL PROTEIN S13 >gi|7440395|pir||... 76 2e-13
sp|Q46448|RS13_CHLTR 30S RIBOSOMAL PROTEIN S13 >gi|3328946|gb|AA... 75 3e-13
pir||D81663 ribosomal protein S13 TC0796 [imported] - Chlamydia ... 75 3e-13
pir||I40744 ribosomal protein S13 - Chlamydia trachomatis >gi|62... 75 4e-13
pir||H82917 ribosomal protein S13 UU255 [imported] - Ureaplasma ... 74 1e-12
sp|P73299|RS13_SYNY3 30S RIBOSOMAL PROTEIN S13 >gi|7440386|pir||... 73 2e-12
gi|11467125 rps13 [Marchantia polymorpha] >gi|417736|sp|P26872|R... 71 7e-12
gi|11467401 ribosomal protein S13 [Cyanophora paradoxa] >gi|1350... 71 7e-12
pir||F75312 ribosomal protein S13 - Deinococcus radiodurans (str... 71 7e-12
sp|Q9XD12|RS13_LEPIN 30S RIBOSOMAL PROTEIN S13 >gi|5163228|gb|AA... 70 1e-11
pir||G83113 30S ribosomal protein S13 PA4241 [imported] - Pseudo... 69 2e-11
gi|9838401 ribosomal protein S13 [Beta vulgaris] 69 3e-11
pdb|1FJF|M Chain M, Structure Of The Thermus Thermophilus 30s Ri... 69 3e-11
sp|P23209|RT13_DAUCA MITOCHONDRIAL RIBOSOMAL PROTEIN S13 >gi|709... 68 4e-11
sp|O24708|RS13_SYNP6 30S RIBOSOMAL PROTEIN S13 >gi|2446911|dbj|B... 68 6e-11
sp|P20282|RS13_BACSU 30S RIBOSOMAL PROTEIN S13 (BS14) >gi|104498... 67 1e-10
pir||H64094 ribosomal protein S13 - Haemophilus influenzae (stra... 67 1e-10
sp|P44380|RS13_HAEIN 30S RIBOSOMAL PROTEIN S13 >gi|1573810|gb|AA... 67 1e-10
>pir||B75171 ssu ribosomal protein s13p/s18e PAB0360 - Pyrococcus abyssi
(strain Orsay) >gi|5457959|emb|CAB49449.1| (AJ248284)
SSU ribosomal protein S13P/S18E [Pyrococcus abyssi]
Length = 148
Score = 302 bits (766), Expect = 1e-81
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVK 60
MADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVK
Sbjct: 1 MADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVK 60
Query: 61 KIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
KIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRH
Sbjct: 61 KIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
Query: 121 ELGLPVRGQRTRSNFRRGQTVGVSRKKK 148
ELGLPVRGQRTRSNFRRGQTVGVSRKKK
Sbjct: 121 ELGLPVRGQRTRSNFRRGQTVGVSRKKK 148
>sp|O74021|RS13_PYRHO 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440388|pir||A71044 probable
ribosomal protein S13 - Pyrococcus horikoshii
>gi|3258070|dbj|BAA30753.1| (AP000006) 148aa long
hypothetical 30S ribosomal protein S13 [Pyrococcus
horikoshii]
Length = 148
Score = 297 bits (753), Expect = 4e-80
Identities = 144/148 (97%), Positives = 147/148 (99%)
Query: 1 MADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVK 60
M DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVK
Sbjct: 1 MVDFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVK 60
Query: 61 KIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
KIEEILQDPV+HGIPRWAVNRPKDYETG+DLHLITAKLDMAIREDIMRLRRIRAYRGIRH
Sbjct: 61 KIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
Query: 121 ELGLPVRGQRTRSNFRRGQTVGVSRKKK 148
ELGLPVRGQRTRSNFRRGQTVGVS+KKK
Sbjct: 121 ELGLPVRGQRTRSNFRRGQTVGVSKKKK 148
>sp|P54019|RS13_METJA 30S RIBOSOMAL PROTEIN S13P/S18E >gi|2826258|gb|AAB98169.1| (U67475)
SSU ribosomal protein S13P (rpsM) [Methanococcus
jannaschii]
Length = 150
Score = 180 bits (451), Expect = 1e-44
Identities = 90/147 (61%), Positives = 109/147 (73%)
Query: 2 ADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61
++F++++RV+ DLDGNK+L AL I GVG A + RVA LDP AGYLT+E+VKK
Sbjct: 4 SEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKK 63
Query: 62 IEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHE 121
IEE+L DP GIP W NR KDY TG D H+I + L + +EDI RL+RIR YRGIRHE
Sbjct: 64 IEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHE 123
Query: 122 LGLPVRGQRTRSNFRRGQTVGVSRKKK 148
LGLP RGQRT+S FRRG TVGVSR+KK
Sbjct: 124 LGLPCRGQRTKSTFRRGPTVGVSRRKK 150
>pir||F64323 ribosomal protein S18 - Methanococcus jannaschii
Length = 186
Score = 180 bits (451), Expect = 1e-44
Identities = 90/147 (61%), Positives = 109/147 (73%)
Query: 2 ADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61
++F++++RV+ DLDGNK+L AL I GVG A + RVA LDP AGYLT+E+VKK
Sbjct: 40 SEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKK 99
Query: 62 IEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHE 121
IEE+L DP GIP W NR KDY TG D H+I + L + +EDI RL+RIR YRGIRHE
Sbjct: 100 IEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHE 159
Query: 122 LGLPVRGQRTRSNFRRGQTVGVSRKKK 148
LGLP RGQRT+S FRRG TVGVSR+KK
Sbjct: 160 LGLPCRGQRTKSTFRRGPTVGVSRRKK 186
>sp|O26141|RS13_METTH 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440389|pir||F69143 ribosomal
protein S13 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621070|gb|AAB84542.1| (AE000796)
ribosomal protein S18 (E.coli S13) [Methanobacterium
thermoautotrophicum]
Length = 149
Score = 170 bits (426), Expect = 8e-42
Identities = 76/146 (52%), Positives = 109/146 (74%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
+F+H+VR+A D+DGNK + ALT+IKGVG + + AG D + GYL+DE+++++
Sbjct: 4 EFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERL 63
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
EE +++P + IP W +NR DYETG D HLI + L+M +RED+ R+R+ R+Y+G RHEL
Sbjct: 64 EEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHEL 123
Query: 123 GLPVRGQRTRSNFRRGQTVGVSRKKK 148
GLPVRGQRT+S FR+G +VGV RKK+
Sbjct: 124 GLPVRGQRTKSTFRKGSSVGVRRKKR 149
>gb|AAK40436.1| SSU ribosomal protein S13AB (rps13AB) [Sulfolobus solfataricus]
Length = 165
Score = 154 bits (386), Expect = 4e-37
Identities = 70/144 (48%), Positives = 100/144 (68%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+++VR+ G D+DG +L +AL +KG+G N A + R G+DP + G L+D +VKK+E
Sbjct: 5 FKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVE 64
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
++ D G+P W NR KDYE+G DLHL+T+ L +R DI R ++ R++RG+RH LG
Sbjct: 65 SVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLG 124
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQRTR+ R G T+GV+RKK
Sbjct: 125 LKVRGQRTRTTGRTGMTIGVARKK 148
>sp|P95986|RS13_SULSO 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440378|pir||S75414 probable
ribosomal protein S18 - Sulfolobus solfataricus
>gi|1707820|emb|CAA69528.1| (Y08257) ribosomal protein
S18 [Sulfolobus solfataricus]
Length = 165
Score = 154 bits (386), Expect = 4e-37
Identities = 70/144 (48%), Positives = 100/144 (68%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+++VR+ G D+DG +L +AL +KG+G N A + R G+DP + G L+D +VKK+E
Sbjct: 5 FKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVE 64
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
++ D G+P W NR KDYE+G DLHL+T+ L +R DI R ++ R++RG+RH LG
Sbjct: 65 SVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLG 124
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQRTR+ R G T+GV+RKK
Sbjct: 125 LKVRGQRTRTTGRTGMTIGVARKK 148
>pir||T27228 hypothetical protein Y57G11C.16 - Caenorhabditis elegans
>gi|3881192|emb|CAB16517.1| (Z99281) contains similarity
to Pfam domain: PF00416 (Ribosomal protein S13/S18),
Score=253.9, E-value=6.8e-73, N=1~cDNA EST EMBL:T01950
comes from this gene; cDNA EST yk634e7.3 comes from this
gene; cDNA EST yk634e7.5 comes from this gene; cDNA EST
yk>
Length = 154
Score = 142 bits (355), Expect = 2e-33
Identities = 69/144 (47%), Positives = 101/144 (69%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+HI RV ++DGN+++ +ALTAIKGVG FA + CR A +D +AG LT+E KI
Sbjct: 9 FQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKIV 68
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
I+Q+P + IP W +NR KD + G+ L++ +D +RED+ R+++IR +RG+RH G
Sbjct: 69 TIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWG 128
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQ T++ R+G+TVGVS+KK
Sbjct: 129 LRVRGQHTKTTGRKGRTVGVSKKK 152
>gi|11499866 SSU ribosomal protein S13P (rps13P) [Archaeoglobus fulgidus]
>gi|6226060|sp|O27999|RS13_ARCFU 30S RIBOSOMAL PROTEIN
S13P/S18E >gi|7440379|pir||E69535 SSU ribosomal protein
S13P (rps13P) homolog - Archaeoglobus fulgidus
>gi|2648238|gb|AAB88972.1| (AE000947) SSU ribosomal
protein S13P (rps13P) [Archaeoglobus fulgidus]
Length = 146
Score = 142 bits (354), Expect = 2e-33
Identities = 69/145 (47%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+HIVR+A DLDGNK L +ALT IKG+G+ A + G+D K G L DE ++K++
Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVK 62
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
+ +++ + +P W +NR KD +G+DLHL++ +D A DI RL +++AYRG+RH G
Sbjct: 63 KFVEEEI-ESLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARG 121
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKKK 148
VRGQRTRS R+G+TVGV R+K+
Sbjct: 122 KKVRGQRTRSTGRKGRTVGVVRRKR 146
>gi|6755368 ribosomal protein S18 [Mus musculus]
>gi|133840|sp|P25232|RS18_HUMAN 40S RIBOSOMAL PROTEIN
S18 (KE-3) (KE3) >gi|70965|pir||R3RT18 ribosomal protein
S18, cytosolic [validated] - rat >gi|423074|pir||S30393
ribosomal protein S18, cytosolic - human
>gi|2119092|pir||I76666 ribosomal protein S13 - mouse
>gi|198580|gb|AAA16795.1| (M76763) ribosomal protein
[Mus musculus] >gi|433447|emb|CAA40750.1| (X57529)
ribosomal protein S18 [Rattus rattus]
>gi|1841304|dbj|BAA19211.1| (AB000911) ribosomal protein
[Sus scrofa] >gi|3811382|gb|AAC69898.1| (AF100956)
ribosomal protein subunit S18 [Mus musculus]
>gi|3820980|emb|CAA20231.1| (AL031228) dJ1033B10.4 (40S
ribosomal protein S18 (RPS18, KE-3)) [Homo sapiens]
>gi|4050105|gb|AAC97978.1| (AF110520) RPS18 [Mus
musculus] >gi|6006558|emb|CAB56794.1| (X69150) ribosomal
protein S18 [Homo sapiens]
Length = 152
Score = 139 bits (348), Expect = 1e-32
Identities = 67/144 (46%), Positives = 104/144 (71%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+HI+RV ++DG +++ +A+TAIKGVG +A +V R A +D +AG LT+++V+++
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVI 68
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
I+Q+P + IP W +NR KD + G+ ++ LD +RED+ RL++IRA+RG+RH G
Sbjct: 69 TIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQ T++ RRG+TVGVS+KK
Sbjct: 129 LRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P48151|RS18_ENTHI 40S RIBOSOMAL PROTEIN S18 >gi|509603|gb|AAD09140.1| (L34567)
ribosomal protein S18 [Entamoeba histolytica]
Length = 155
Score = 139 bits (346), Expect = 2e-32
Identities = 66/147 (44%), Positives = 103/147 (69%)
Query: 2 ADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61
++F+H++RV +LDG +++ +ALT IKG G +A +VC+ AG+D +AG +T +++K
Sbjct: 8 SEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEK 67
Query: 62 IEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHE 121
I +IL + + IP W +NR KD + G+D LI ++ +REDI L+++RA+RG+RH
Sbjct: 68 IVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHY 127
Query: 122 LGLPVRGQRTRSNFRRGQTVGVSRKKK 148
GL VRGQ T++ RRG+TVGVSR K+
Sbjct: 128 WGLRVRGQNTKTTGRRGRTVGVSRTKR 154
>sp|O94754|RS18_SCHPO 40S RIBOSOMAL PROTEIN S18 >gi|7489962|pir||T40890 40s ribosomal
protein - fission yeast (Schizosaccharomyces pombe)
>gi|7493320|pir||T39575 40s ribosomal protein s18 -
fission yeast (Schizosaccharomyces pombe)
>gi|4049534|emb|CAA22539.1| (AL034564) 40s ribosomal
protein S18 [Schizosaccharomyces pombe]
>gi|4481957|emb|CAB38515.1| (AL035637) ribosomal protein
subunit s18. [Schizosaccharomyces pombe]
Length = 152
Score = 138 bits (343), Expect = 4e-32
Identities = 64/145 (44%), Positives = 100/145 (68%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
+F+HI+R+ ++DG ++ +A+T IKGVG +A +VC+ A +D +AG LT E++++I
Sbjct: 8 NFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERI 67
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
I+Q+P IP W +NR KD G+ L+ +D +RED+ RL++I+ +RG+RH L
Sbjct: 68 VTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHAL 127
Query: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQ T++ RRG+TVGVS+KK
Sbjct: 128 DLRVRGQHTKTTGRRGKTVGVSKKK 152
>gb|AAA16796.1| (M76762) ribosomal protein [Mus musculus]
Length = 152
Score = 137 bits (341), Expect = 8e-32
Identities = 66/144 (45%), Positives = 103/144 (70%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+HI+RV ++DG +++ +A+TAIKGVG +A +V R A +D +AG LT+++V+++
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVI 68
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
I+Q+P + IP W +NR KD + G+ ++ L +RED+ RL++IRA+RG+RH G
Sbjct: 69 TIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLHNKLREDLERLKKIRAHRGLRHFWG 128
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQ T++ RRG+TVGVS+KK
Sbjct: 129 LRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P39470|RS13_SULAC 30S RIBOSOMAL PROTEIN S13P/S18E >gi|629414|pir||S47020 ribosomal
protein S13 - Sulfolobus acidocaldarius
>gi|517287|emb|CAA56477.1| (X80194) ribosomal protein
S13 [Sulfolobus acidocaldarius]
Length = 184
Score = 136 bits (338), Expect = 2e-31
Identities = 69/145 (47%), Positives = 95/145 (64%), Gaps = 1/145 (0%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F++IVR+ G D+DG +L +AL IKG+G N A ++ R LD + G ++DE +KKIE
Sbjct: 6 FKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIE 65
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLR-RIRAYRGIRHEL 122
+L + + P W NR KDYE+G D+HL+T+ L E I+R R R R++RG+RH L
Sbjct: 66 NLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFLQLEMILRGRGRSRSWRGVRHSL 125
Query: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
GL VRGQRTR+ R G T+GV R K
Sbjct: 126 GLKVRGQRTRTTGRTGATIGVRRAK 150
>sp|P49202|RS18_CHLRE 40S RIBOSOMAL PROTEIN S18 >gi|1076216|pir||S51145 ribosomal protein
S18.e, cytosolic - Chlamydomonas reinhardtii
>gi|624957|emb|CAA58668.1| (X83693) ribosomal protein
S18 [Chlamydomonas reinhardtii]
>gi|1587084|prf||2205351A ribosomal protein S18
[Chlamydomonas reinhardtii]
Length = 153
Score = 134 bits (334), Expect = 5e-31
Identities = 61/145 (42%), Positives = 104/145 (71%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
DF+HI+R+ ++DG ++ +A+TAI+G+G F+ +VC+ A +D AG + ++++++
Sbjct: 9 DFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERM 68
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
I+ +P A+ IP W +NR KD++TGR L +++LD +R+D+ RL++IR +RG+RH
Sbjct: 69 MGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYW 128
Query: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
GL VRGQ T++ R G+TVGV++KK
Sbjct: 129 GLRVRGQHTKTTGRAGKTVGVAKKK 153
>sp|P41094|RS18_DROME 40S RIBOSOMAL PROTEIN S18 >gi|349256|gb|AAA28870.1| (L22959)
ribosomal protein S18 [Drosophila melanogaster]
>gi|7302403|gb|AAF57491.1| (AE003792) RpS18 gene product
[Drosophila melanogaster]
Length = 152
Score = 134 bits (334), Expect = 5e-31
Identities = 62/144 (43%), Positives = 101/144 (70%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+HI+R+ ++DG +++ A+TAIKGVG ++ +V + A +D +AG T+E+V K+
Sbjct: 9 FQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVV 68
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
I+ +P+ + +P W +NR KD G+ L ++ LD +R+D+ RL++IR++RG+RH G
Sbjct: 69 TIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWG 128
Query: 124 LPVRGQRTRSNFRRGQTVGVSRKK 147
L VRGQ T++ RRG+TVGVS+KK
Sbjct: 129 LRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P34788|RS18_ARATH 40S RIBOSOMAL PROTEIN S18 >gi|480908|pir||S37496 ribosomal protein
S18.A, cytosolic - Arabidopsis thaliana
>gi|405613|emb|CAA80684.1| (Z23165) ribosomal protein
S18A [Arabidopsis thaliana] >gi|434343|emb|CAA82273.1|
(Z28701) S18 ribosomal protein [Arabidopsis thaliana]
>gi|434345|emb|CAA82274.1| (Z28702) S18 ribosomal
protein [Arabidopsis thaliana]
>gi|434906|emb|CAA82275.1| (Z28962) S18 ribosomal
protein [Arabidopsis thaliana]
>gi|2505871|emb|CAA72909.1| (Y12227) ribosomal protein
S18A [Arabidopsis thaliana] >gi|3287678|gb|AAC25506.1|
(AC003979) Match to ribosomal S18 gene mRNA gb|Z28701,
DNA gb|Z23165 from A. thaliana. ESTs gb|T21121,
gb|Z17755, gb|R64776 and gb|R30430 come from this gene.
[Arabidopsis thaliana] >gi|4538910|emb|CAB39647.1|
(AL049482) S18.A ribosomal protein [Arabidopsis
thaliana] >gi|7267675|emb|CAB78103.1| (AL161515) S18.A
ribosomal protein [Arabidopsis thaliana]
>gi|10086474|gb|AAG12534.1|AC015446_15 (AC015446)
ribosomal protein S18 [Arabidopsis thaliana]
>gi|10092450|gb|AAG12853.1|AC079286_10 (AC079286) 40S
ribosomal protein S18; 25853-24673 [Arabidopsis
thaliana]
Length = 152
Score = 133 bits (332), Expect = 9e-31
Identities = 62/145 (42%), Positives = 101/145 (68%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
+F+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ +
Sbjct: 8 EFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNL 67
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
I+ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR +RG+RH
Sbjct: 68 MTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW 127
Query: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
GL VRGQ T++ RRG+TVGVS+K+
Sbjct: 128 GLRVRGQHTKTTGRRGKTVGVSKKR 152
>gi|6320658 Ribosomal protein S18A; Rps18ap [Saccharomyces cerevisiae]
>gi|6323615|ref|NP_013686.1| Ribosomal protein S18B;
Rps18bp [Saccharomyces cerevisiae]
>gi|1350951|sp|P35271|RS18_YEAST 40S RIBOSOMAL PROTEIN
S18 >gi|1071977|pir||S50886 ribosomal protein S18.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|575693|emb|CAA86629.1| (Z46659) 40S ribosomal
protein gene, len: 146, CAI: 0.74 [Saccharomyces
cerevisiae] >gi|927725|gb|AAB64891.1| (U33007) Ydr450wp
[Saccharomyces cerevisiae]
Length = 146
Score = 127 bits (317), Expect = 5e-29
Identities = 58/134 (43%), Positives = 93/134 (69%)
Query: 4 FRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIE 63
F+HI+R+ ++DGN ++ +ALT IKGVG ++ +VC+ A +D +AG LT E++++I
Sbjct: 11 FQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIV 70
Query: 64 EILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELG 123
+I+Q+P + IP W +NR D G+D H + ++ +R+D+ RL++IRA+RGIRH G
Sbjct: 71 QIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWG 130
Query: 124 LPVRGQRTRSNFRR 137
L VRGQ T++ RR
Sbjct: 131 LRVRGQHTKTTGRR 144
>sp|Q9YB60|RS13_AERPE 30S RIBOSOMAL PROTEIN S13P/S18E >gi|7440391|pir||E72556 probable
ribosomal protein S13 APE1737 - Aeropyrum pernix
(strain K1) >gi|5105425|dbj|BAA80738.1| (AP000062) 111aa
long hypothetical 30S ribosomal protein S13 [Aeropyrum
pernix]
Length = 111
Score = 122 bits (303), Expect = 2e-27
Identities = 56/109 (51%), Positives = 80/109 (73%)
Query: 39 VCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKL 98
V R+ GLDP K G+LT+E++++++E+L+D G+P+W NR KDYETG+DLHLI ++L
Sbjct: 3 VIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSEL 62
Query: 99 DMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147
R DI R +I ++RGIRH+ GL VRGQRTR+ R G T+GV +K+
Sbjct: 63 IFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 111
>emb|CAC12162.1| (AL445066) probable ribosomal protein S13 [Thermoplasma
acidophilum]
Length = 171
Score = 120 bits (298), Expect = 8e-27
Identities = 59/146 (40%), Positives = 98/146 (66%), Gaps = 1/146 (0%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
DF++IVR+A DL+G + L AL+ +KG+G ++ L K G L +EQ++K+
Sbjct: 27 DFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKL 86
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
E ++ + +P W +N ++ TG++L+L++ L++ ++EDI +++IR+Y+GIRHE
Sbjct: 87 REYVEAK-EYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEK 145
Query: 123 GLPVRGQRTRSNFRRGQTVGVSRKKK 148
G VRGQRTRSN R+G ++GV RKK+
Sbjct: 146 GKKVRGQRTRSNGRKGLSIGVVRKKE 171
>gb|AAF70446.1|AF210641_1 (AF210641) Ke3 [Danio rerio]
Length = 126
Score = 116 bits (289), Expect = 9e-26
Identities = 57/125 (45%), Positives = 89/125 (70%)
Query: 19 KQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWA 78
+++ +A+TAIKGVG +A +V R A +D +AG LT+++V+++ I+Q+P + IP W
Sbjct: 2 RKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWF 61
Query: 79 VNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRG 138
+NR KD + G+ ++ LD +RED+ RL++IRA+RG+RH GL VRGQ T++ RRG
Sbjct: 62 LNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRG 121
Query: 139 QTVGV 143
+TVGV
Sbjct: 122 RTVGV 126
>sp|Q00861|RS13_HALMA 30S RIBOSOMAL PROTEIN S13P/S18E (HMAS13) >gi|322342|pir||A44126
ribosomal protein S13 [similarity] - Haloarcula
marismortui >gi|148770|gb|AAA73209.1| (M87833) ribosomal
protein HmaS13 [Haloarcula marismortui]
Length = 177
Score = 104 bits (258), Expect = 4e-22
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
D R+ VR+ DLDG K + ALT + G+G A ++ + A +D G L D+ ++++
Sbjct: 19 DIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERV 78
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
E +++ A +P W N KDY TG H L + R+DI R++ I +YRG+RH+
Sbjct: 79 VERVEN-FADDVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKR 137
Query: 123 GLPVRGQRTRSNFRRGQTVGVS 144
G VRGQRT+S R T+GV+
Sbjct: 138 GQKVRGQRTKSTGRTEGTIGVN 159
>pir||T43937 ribosomal protein S13 [similarity] - Halobacterium salinarum
>gi|6172227|dbj|BAA85895.1| (AB030282) ribosomal protein
HS13 [Halobacterium halobium]
>gi|10580671|gb|AAG19517.1| (AE005043) 30S ribosomal
protein S13P; Rps13p [Halobacterium sp. NRC-1]
Length = 171
Score = 104 bits (258), Expect = 4e-22
Identities = 54/142 (38%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
D ++ VR+ DLDG K + AL + GVG A +V AG+D G L D+ ++ +
Sbjct: 12 DIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESV 71
Query: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
+ + H P W NR D+ TG + H+ +++ +DI R+R IR+Y+GIRHE
Sbjct: 72 TDAVDSFTEHA-PAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHER 130
Query: 123 GLPVRGQRTRSNFRRGQTVGVS 144
G VRGQRT+S R T+GV+
Sbjct: 131 GQKVRGQRTKSTGRTEGTIGVN 152
>emb|CAB46821.1| (AJ388519) Ribosomal protein [Canis familiaris]
Length = 97
Score = 99.5 bits (244), Expect = 2e-20
Identities = 47/97 (48%), Positives = 71/97 (72%)
Query: 51 AGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLR 110
AG LT+++V+++ I+Q+P + IP W +NR KD + G+ ++ LD +RED+ RL+
Sbjct: 1 AGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLK 60
Query: 111 RIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147
+IRA+RG+RH GL VRGQ T++ RRG+TVGVS+KK
Sbjct: 61 KIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 97
>gb|AAD03679.1| (AF081143) ribosomal protein S18 [Cricetulus sp.]
Length = 95
Score = 94.4 bits (231), Expect = 6e-19
Identities = 44/94 (46%), Positives = 68/94 (71%)
Query: 54 LTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIR 113
L +++V+++ I+Q+P + IP W +NR KD + G+ ++ LD +RED+ RL++IR
Sbjct: 2 LNEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 61
Query: 114 AYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147
A+RG+RH GL VRGQ T++ RRG+TVGVS+KK
Sbjct: 62 AHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 95
>pir||T41627 ribosomal protein subunit s18 - fission yeast (Schizosaccharomyces
pombe) (fragment) >gi|6066741|emb|CAB58414.1| (AL122011)
ribosomal protein subunit s18 [Schizosaccharomyces
pombe]
Length = 83
Score = 87.8 bits (214), Expect = 6e-17
Identities = 40/83 (48%), Positives = 57/83 (68%)
Query: 65 ILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGL 124
I+Q+P IP W +NR KD G+ L+ +D +RED+ RL++I+ +RG+RH L L
Sbjct: 1 IIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDL 60
Query: 125 PVRGQRTRSNFRRGQTVGVSRKK 147
VRGQ T++ RRG+TVGVS+KK
Sbjct: 61 RVRGQHTKTTGRRGKTVGVSKKK 83
>sp|Q9X1I5|RS13_THEMA 30S RIBOSOMAL PROTEIN S13 >gi|7440396|pir||D72247 ribosomal protein
S13 - Thermotoga maritima (strain MSB8)
>gi|4982041|gb|AAD36543.1|AE001798_8 (AE001798)
ribosomal protein S13 [Thermotoga maritima]
Length = 125
Score = 83.9 bits (204), Expect = 9e-16
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 22/141 (15%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+ GV+L NK++ ALT I G+G + + + + G+DP + G LTDE++ KI + +
Sbjct: 1 MARIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYI 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
QD + +L + +I RL I YRGIRH+LGLPV
Sbjct: 61 QDHFK----------------------VEGELRSEVERNIRRLIEIGCYRGIRHKLGLPV 98
Query: 127 RGQRTRSNFRRGQTVGVSRKK 147
RGQ+TRSN R + SR K
Sbjct: 99 RGQKTRSNARTRKGPRPSRIK 119
>sp|O51453|RS13_BORBU 30S RIBOSOMAL PROTEIN S13 >gi|7440385|pir||C70162 ribosomal protein
S13 (rpsM) - Lyme disease spirochete
>gi|2688391|gb|AAC66842.1| (AE001152) ribosomal protein
S13 (rpsM) [Borrelia burgdorferi]
Length = 125
Score = 80.4 bits (195), Expect = 1e-14
Identities = 48/143 (33%), Positives = 76/143 (52%), Gaps = 24/143 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R++G+DL NKQL+ ALT+I G+G A VC + + P A L +++V ++ +++
Sbjct: 1 MARISGIDLPNNKQLKIALTSIYGIGRTRALEVCNKSSISPSKIAKDLDNDEVNRLRKVI 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
+ DY ++ KL + I RL I YRG+RH GLP+
Sbjct: 61 E---------------SDY-------IVEGKLRSEVAMSIKRLMDIACYRGVRHRKGLPL 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKK 147
RGQRT++N R+G+ V+ KK
Sbjct: 99 RGQRTKTNARTRKGKRKTVANKK 121
>gi|11465761 30S ribosomal protein S13 [Porphyra purpurea]
>gi|1710693|sp|P51295|RR13_PORPU CHLOROPLAST 30S
RIBOSOMAL PROTEIN S13 >gi|2147026|pir||S73216 ribosomal
protein S13, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276761|gb|AAC08181.1| (U38804) 30S
ribosomal protein S13 [Porphyra purpurea]
Length = 126
Score = 78.0 bits (189), Expect = 5e-14
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGVDL NK++ ALT I G+G++ + + + +D ++ L D+Q+ I EIL
Sbjct: 1 MARIAGVDLPRNKRIEIALTYIYGIGLSRSKEILKKTNIDADIRCQNLNDQQIVSIREIL 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
+ Y+ DL + I RL I YRG RH LGLP+
Sbjct: 61 E---------------SSYQIEGDLKRFESM-------SIKRLMEISTYRGRRHRLGLPL 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQRTR+N RRG V+ KKK
Sbjct: 99 RGQRTRTNARTRRGGKKTVAGKKK 122
>sp|O66486|RS13_AQUAE 30S RIBOSOMAL PROTEIN S13 >gi|7440382|pir||C70307 ribosomal protein
S13 - Aquifex aeolicus >gi|2982822|gb|AAC06445.1|
(AE000672) ribosomal protein S13 [Aquifex aeolicus]
Length = 126
Score = 76.1 bits (184), Expect = 2e-13
Identities = 48/146 (32%), Positives = 77/146 (51%), Gaps = 26/146 (17%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGVDL NK+L ALT I G+G + A +C G+ + G LT +++ + + +
Sbjct: 1 MARIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFI 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
+ +Y+ DL ++ +I +L+ + YRGIRH GLPV
Sbjct: 61 DE---------------NYKVEGDLR-------REVQLNIKKLKDMGCYRGIRHARGLPV 98
Query: 127 RGQRTRSNFR----RGQTVGVSRKKK 148
RGQ+TR+N R + +TVG ++K K
Sbjct: 99 RGQQTRTNARTRKGKRKTVGGTKKAK 124
>sp|Q9Z7S6|RS13_CHLPN 30S RIBOSOMAL PROTEIN S13 >gi|7440395|pir||F72053 ribosomal protein
S13 CP0119 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376926|gb|AAD18767.1|
(AE001647) S13 Ribosomal Protein [Chlamydophila
pneumoniae CWL029] >gi|7189053|gb|AAF38002.1| (AE002173)
ribosomal protein S13 [Chlamydophila pneumoniae AR39]
>gi|8979000|dbj|BAA98835.1| (AP002547) S13 ribosomal
protein [Chlamydophila pneumoniae J138]
Length = 122
Score = 76.1 bits (184), Expect = 2e-13
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 9 RVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQD 68
R+ G+D+ K+L+ +LT I G+G + + + LDP +A LT+E+V ++ +LQ
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGSARSDEIIKKLKLDPEARASELTEEEVGRLNSLLQS 62
Query: 69 PVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
+ + L ++ DI RL I +YRG RH L LPVRG
Sbjct: 63 E----------------------YTVEGDLRRRVQSDIKRLIAIHSYRGQRHRLSLPVRG 100
Query: 129 QRTRSN--FRRGQTVGVSRKKK 148
QRT++N R+G+ V+ KKK
Sbjct: 101 QRTKTNSRTRKGKRKTVAGKKK 122
>sp|Q46448|RS13_CHLTR 30S RIBOSOMAL PROTEIN S13 >gi|3328946|gb|AAC68110.1| (AE001323) S13
Ribosomal Protein [Chlamydia trachomatis]
Length = 122
Score = 75.3 bits (182), Expect = 3e-13
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 9 RVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQD 68
R+ G+D+ K+L+ +LT I G+G + + L+P +A LT+E+V ++ +LQ
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSKEIIARLQLNPEARAAELTEEEVGRLNALLQS 62
Query: 69 PVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
DY DL ++ DI RL I AYRG RH L LPVRG
Sbjct: 63 ---------------DYVVEGDLR-------RRVQSDIKRLITIHAYRGQRHRLSLPVRG 100
Query: 129 QRTRSN--FRRGQTVGVSRKKK 148
QRT++N R+G+ V+ KKK
Sbjct: 101 QRTKTNSRTRKGKRKTVAGKKK 122
>pir||D81663 ribosomal protein S13 TC0796 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190824|gb|AAF39599.1| (AE002347)
ribosomal protein S13 [Chlamydia muridarum]
Length = 122
Score = 75.3 bits (182), Expect = 3e-13
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 9 RVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQD 68
R+ G+D+ K+L+ +LT I G+G + + L+P +A LT+E+V ++ +LQ
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSEEIIARLQLNPEARAAELTEEEVGRLNALLQS 62
Query: 69 PVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
DY DL ++ DI RL I AYRG RH L LPVRG
Sbjct: 63 ---------------DYVVEGDLR-------RRVQSDIKRLITIHAYRGQRHRLSLPVRG 100
Query: 129 QRTRSN--FRRGQTVGVSRKKK 148
QRT++N R+G+ V+ KKK
Sbjct: 101 QRTKTNSRTRKGKRKTVAGKKK 122
>pir||I40744 ribosomal protein S13 - Chlamydia trachomatis
>gi|620027|gb|AAA74987.1| (L33834) ribosomal protein S13
[Chlamydia trachomatis]
Length = 122
Score = 74.9 bits (181), Expect = 4e-13
Identities = 49/142 (34%), Positives = 73/142 (50%), Gaps = 24/142 (16%)
Query: 9 RVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQD 68
R+ G+D+ K+L+ +LT I G+G + + L+P +A LT+E+V ++ +LQ
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSKEIIARLQLNPEARAAELTEEEVGRLNALLQS 62
Query: 69 PVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
DY DL ++ DI RL I AYRG RH L LPVRG
Sbjct: 63 ---------------DYVVEGDLR-------RRVQSDIKRLITIHAYRGQRHRLSLPVRG 100
Query: 129 QRTRSN--FRRGQTVGVSRKKK 148
QRT++N R+G+ ++ KKK
Sbjct: 101 QRTKTNSRTRKGKRKTIAGKKK 122
>pir||H82917 ribosomal protein S13 UU255 [imported] - Ureaplasma urealyticum
>gi|6899225|gb|AAF30664.1|AE002122_33 (AE002122)
ribosomal protein S13 [Ureaplasma urealyticum]
Length = 132
Score = 73.7 bits (178), Expect = 1e-12
Identities = 50/143 (34%), Positives = 76/143 (52%), Gaps = 17/143 (11%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+ GVD+ +K++ +LT I G+G + + + ++A +D ++ L DEQ+ +I +
Sbjct: 1 MARILGVDIPNDKRVVISLTYIFGIGKSTSQQILKLANIDENIRVKDLADEQIAEIRRV- 59
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
A+N K G L L L + DI RL I +YRGIRH GLPV
Sbjct: 60 -----------ALNFVK--ANGEKLQL-EGDLRRTVAMDIKRLMEIGSYRGIRHRRGLPV 105
Query: 127 RGQRTRSN--FRRGQTVGVSRKK 147
RGQRT++N R+G V+ KK
Sbjct: 106 RGQRTKTNARTRKGPRKTVANKK 128
>sp|P73299|RS13_SYNY3 30S RIBOSOMAL PROTEIN S13 >gi|7440386|pir||S77480 ribosomal protein
S13 - Synechocystis sp. (strain PCC 6803)
>gi|1652405|dbj|BAA17327.1| (D90905) 30S ribosomal
protein S13 [Synechocystis sp.]
Length = 127
Score = 72.6 bits (175), Expect = 2e-12
Identities = 50/144 (34%), Positives = 74/144 (50%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGVDL +K++ ALT + G+G++ + + G+ P ++ L+DE K+ +
Sbjct: 1 MARIAGVDLPRDKRVEIALTYLYGIGLSRSHEILDATGVSPDVRVKDLSDEDALKLRTYI 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
+ +YE DL A +I RL I YRG RH GLPV
Sbjct: 61 DE---------------NYEIEGDLRRWEAM-------NIKRLGDIGTYRGRRHRQGLPV 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQRTR+N RRG+ + V+ KKK
Sbjct: 99 RGQRTRTNARTRRGRRLTVAGKKK 122
>gi|11467125 rps13 [Marchantia polymorpha] >gi|417736|sp|P26872|RT13_MARPO
MITOCHONDRIAL RIBOSOMAL PROTEIN S13
>gi|541554|pir||S41141 ribosomal protein S13 - liverwort
(Marchantia polymorpha) mitochondrion
>gi|250828|gb|AAB22420.1| ribosomal protein S13
[Marchantia polymorpha=liverwort, Peptide Mitochondrial,
120 aa] >gi|786210|gb|AAC09423.1| (M68929) rps13
[Marchantia polymorpha]
Length = 120
Score = 71.0 bits (171), Expect = 7e-12
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 10 VAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDP 69
+ G +L+ NKQ++ ALT I G+G A VC GL +K LT Q +I +I+
Sbjct: 4 ILGTNLNSNKQVKIALTRIFGIGPKKAIQVCDQLGLSDTIKVNKLTKYQFDQILKIISQN 63
Query: 70 VAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129
+L+ ++L I+ DI RL I YRG RH GLP+RGQ
Sbjct: 64 ----------------------YLVDSELKRVIQRDIKRLISIGCYRGFRHNAGLPLRGQ 101
Query: 130 RTRSN 134
RT +N
Sbjct: 102 RTHTN 106
>gi|11467401 ribosomal protein S13 [Cyanophora paradoxa]
>gi|1350871|sp|P48137|RR13_CYAPA CYANELLE 30S RIBOSOMAL
PROTEIN S13 >gi|7440394|pir||T06946 ribosomal protein
S13 - Cyanophora paradoxa cyanelle
>gi|1016202|gb|AAA81289.1| (U30821) ribosomal protein
S13 [Cyanophora paradoxa]
Length = 126
Score = 71.0 bits (171), Expect = 7e-12
Identities = 50/144 (34%), Positives = 70/144 (47%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGVDL +K++ LT I G+G+ + + LDP + L D + ++ EI+
Sbjct: 1 MARIAGVDLPRDKRVEIGLTYIYGIGLTRSKEILSKIELDPDTRVRDLPDNAIAQLREII 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
+ DY+ DL + +I RL I YRG RH L LPV
Sbjct: 61 ET---------------DYQVEGDLRRFESM-------NIKRLADIGCYRGRRHRLNLPV 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQRTR+N RRG V+ KKK
Sbjct: 99 RGQRTRTNARTRRGARQTVAGKKK 122
>pir||F75312 ribosomal protein S13 - Deinococcus radiodurans (strain R1)
>gi|6459923|gb|AAF11675.1|AE002047_8 (AE002047)
ribosomal protein S13 [Deinococcus radiodurans]
Length = 126
Score = 71.0 bits (171), Expect = 7e-12
Identities = 50/144 (34%), Positives = 72/144 (49%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AG+DL K++ ALT I G+G+ + + G+ P D +VK + E
Sbjct: 1 MARIAGIDLPREKRVEIALTYIYGIGLTRSKEILARTGVSP--------DTRVKNLSEAE 52
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
Q + I K Y+ DL + ++I RL I AYRG+RH GLPV
Sbjct: 53 QSTLREAIE-------KTYKVEGDLR-------NEVGQNIKRLMDIGAYRGLRHRRGLPV 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQRT++N R+G V+ KKK
Sbjct: 99 RGQRTKTNARTRKGPKKTVAGKKK 122
>sp|Q9XD12|RS13_LEPIN 30S RIBOSOMAL PROTEIN S13 >gi|5163228|gb|AAD40607.1|AF115283_26
(AF115283) ribosomal protein S13 [Leptospira
interrogans]
Length = 125
Score = 70.2 bits (169), Expect = 1e-11
Identities = 48/144 (33%), Positives = 72/144 (49%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AG+DL K++ LT I G+G + + ++ + AG+D ++ L + Q I + L
Sbjct: 1 MARIAGIDLPREKRIVVGLTYIFGIGNSLSKLILKKAGIDESIRVKDLNESQEAAIRKTL 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
+ ET + + L IR +I RL I YRG+RH GLPV
Sbjct: 61 E------------------ETAK----VEGDLRSEIRLNIKRLMDIGCYRGLRHRRGLPV 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
GQRTR+N R+G V+ KKK
Sbjct: 99 NGQRTRTNARTRKGGKKTVANKKK 122
>pir||G83113 30S ribosomal protein S13 PA4241 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950458|gb|AAG07629.1|AE004841_7 (AE004841) 30S
ribosomal protein S13 [Pseudomonas aeruginosa]
Length = 118
Score = 69.5 bits (167), Expect = 2e-11
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 23/130 (17%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGV++ NK +LT I GVG A +C G++P K L+DEQ+ ++ +
Sbjct: 1 MARIAGVNIPDNKHTVISLTYIYGVGRTTAQSICAATGVNPAAKIKDLSDEQIDQLRNEV 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
G R +N +I RL + YRG+RH GLPV
Sbjct: 61 AKITTEGDLRREINM-----------------------NIKRLMDLGCYRGLRHRRGLPV 97
Query: 127 RGQRTRSNFR 136
RGQRT++N R
Sbjct: 98 RGQRTKTNAR 107
>gi|9838401 ribosomal protein S13 [Beta vulgaris]
Length = 116
Score = 69.1 bits (166), Expect = 3e-11
Identities = 47/128 (36%), Positives = 65/128 (50%), Gaps = 24/128 (18%)
Query: 10 VAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL-QD 68
++G L +KQ++ A T I G+G A VC G+ +K LT Q+ +IE+++ QD
Sbjct: 4 ISGARLVDDKQVKIASTKIDGIGPKKAIQVCYRLGISDNIKIKELTKYQIDQIEQMIGQD 63
Query: 69 PVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
V H W + R + R DI RL I YRGIRH+ GLP+RG
Sbjct: 64 HVVH----WELKRGE-------------------RADIERLISISCYRGIRHQDGLPLRG 100
Query: 129 QRTRSNFR 136
QRT +N R
Sbjct: 101 QRTHTNAR 108
>pdb|1FJF|M Chain M, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit >gi|10835597|pdb|1FJG|M Chain M, Structure Of
The Thermus Thermophilus 30s Ribosomal Subunit In
Complex With The Antibiotics Streptomycin, Spectinomycin
And Paromomycin >gi|4519420|dbj|BAA75546.1| (AB024328)
ribosomal protein S13 [Thermus thermophilus]
Length = 126
Score = 69.1 bits (166), Expect = 3e-11
Identities = 47/144 (32%), Positives = 72/144 (49%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGV++ NK++ ALT I G+G A G++P + LT+ +V ++ E +
Sbjct: 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYV 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
++ W + +L + +I RL I YRG+RH GLPV
Sbjct: 61 ENT-------WKLE---------------GELRAEVAANIKRLMDIGCYRGLRHRRGLPV 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQRTR+N R+G V+ KKK
Sbjct: 99 RGQRTRTNARTRKGPRKTVAGKKK 122
>sp|P23209|RT13_DAUCA MITOCHONDRIAL RIBOSOMAL PROTEIN S13 >gi|70972|pir||R3PZ3M ribosomal
protein S13 - carrot mitochondrion
Length = 116
Score = 68.3 bits (164), Expect = 4e-11
Identities = 46/128 (35%), Positives = 65/128 (49%), Gaps = 24/128 (18%)
Query: 10 VAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL-QD 68
++G L +KQ+R ALT + G+G A VC G+ +K LT Q+ ++E+++ QD
Sbjct: 4 ISGARLVADKQVRIALTKMYGIGPKKAIQVCYRLGISGNIKIKELTKYQIDQMEQMIGQD 63
Query: 69 PVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
V H W + R + R DI R I YRGIRH+ GLP+RG
Sbjct: 64 HVVH----WELKRGE-------------------RADIERFISISCYRGIRHQDGLPLRG 100
Query: 129 QRTRSNFR 136
QRT +N R
Sbjct: 101 QRTHTNAR 108
>sp|O24708|RS13_SYNP6 30S RIBOSOMAL PROTEIN S13 >gi|2446911|dbj|BAA22470.1| (AB000111)
30S ribosomal protein S13 [Synechococcus sp.]
Length = 125
Score = 67.9 bits (163), Expect = 6e-11
Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 24/144 (16%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGVDL +K+ LT I G+G A + G+ P + L D +V + +++
Sbjct: 1 MARIAGVDLPRDKRAEIGLTYIYGIGPTRAKEILAKTGVSPDTRIKDLNDSEVAALRQVV 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
++ DY+ DL + A I RL I RG RH GLPV
Sbjct: 61 EN---------------DYQVEGDLRRLEAM-------SIKRLMDIGTVRGRRHRAGLPV 98
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQRTR+N RRG V+ KKK
Sbjct: 99 RGQRTRTNARTRRGARKTVAGKKK 122
>sp|P20282|RS13_BACSU 30S RIBOSOMAL PROTEIN S13 (BS14) >gi|1044989|gb|AAB06824.1|
(L47971) ribosomal protein S13 [Bacillus subtilis]
Length = 121
Score = 67.1 bits (161), Expect = 1e-10
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AGVD+ +K++ +LT I G+G A V + AG+ + LT+E++ KI +I+
Sbjct: 1 MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDII 60
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
G R R++ L +I RL I +YRGIRH GLPV
Sbjct: 61 DKLKVEGDLR------------REVSL-----------NIKRLIEIGSYRGIRHRRGLPV 97
Query: 127 RGQRTRSN--FRRGQTVGVSRKKK 148
RGQ +++N R+G V+ KKK
Sbjct: 98 RGQNSKNNARTRKGPRRTVANKKK 121
>pir||H64094 ribosomal protein S13 - Haemophilus influenzae (strain Rd KW20)
Length = 117
Score = 67.1 bits (161), Expect = 1e-10
Identities = 45/141 (31%), Positives = 70/141 (48%), Gaps = 24/141 (17%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AG+++ +K ALTAI G+G + +C AG+ +K L++EQ+ K+ +
Sbjct: 1 MARIAGINIPDHKHAVIALTAIYGIGKTRSQAICAAAGIAEDVKIRELSEEQIDKLRD-- 58
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
E G+ + L + +I RL + YRG+RH LPV
Sbjct: 59 -------------------EVGK--FTVEGDLRREVTLNIKRLLDLGCYRGLRHRRSLPV 97
Query: 127 RGQRTRSNFRRGQTVGVSRKK 147
RGQRT++N R + V VSR K
Sbjct: 98 RGQRTKTN-ARTRKVHVSRSK 117
>sp|P44380|RS13_HAEIN 30S RIBOSOMAL PROTEIN S13 >gi|1573810|gb|AAC22458.1| (U32762)
ribosomal protein S13 (rpS13) [Haemophilus influenzae
Rd]
Length = 122
Score = 67.1 bits (161), Expect = 1e-10
Identities = 45/141 (31%), Positives = 70/141 (48%), Gaps = 24/141 (17%)
Query: 7 IVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66
+ R+AG+++ +K ALTAI G+G + +C AG+ +K L++EQ+ K+ +
Sbjct: 1 MARIAGINIPDHKHAVIALTAIYGIGKTRSQAICAAAGIAEDVKIRELSEEQIDKLRD-- 58
Query: 67 QDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPV 126
E G+ + L + +I RL + YRG+RH LPV
Sbjct: 59 -------------------EVGK--FTVEGDLRREVTLNIKRLLDLGCYRGLRHRRSLPV 97
Query: 127 RGQRTRSNFRRGQTVGVSRKK 147
RGQRT++N R + V VSR K
Sbjct: 98 RGQRTKTN-ARTRKVHVSRSK 117
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.142 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52967018
Number of Sequences: 2977
Number of extensions: 1989986
Number of successful extensions: 6516
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6462
Number of HSP's gapped (non-prelim): 48
length of query: 148
length of database: 189,106,746
effective HSP length: 50
effective length of query: 98
effective length of database: 159,182,396
effective search space: 15599874808
effective search space used: 15599874808
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)