BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0361 (rps4P) DE:SSU ribosomal protein S4P (rps4P)
         (180 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75171 ssu ribosomal protein s4p (rps4p) PAB0361 - Pyrococc...   363  e-100
sp|O59306|RS4_PYRHO 30S RIBOSOMAL PROTEIN S4P >gi|7440182|pir||H...   359  1e-98
sp|P54020|RS4_METJA 30S RIBOSOMAL PROTEIN S4P >gi|2129270|pir||G...   212  2e-54
gi|11499865 SSU ribosomal protein S4P (rps4P) [Archaeoglobus ful...   185  2e-46
sp|O26142|RS4_METTH 30S RIBOSOMAL PROTEIN S4P >gi|7440184|pir||A...   183  1e-45
gb|AAK40435.1| SSU ribosomal protein S4AB (rps4AB) [Sulfolobus s...   181  4e-45
sp|P95987|RS4_SULSO 30S RIBOSOMAL PROTEIN S4P >gi|7440183|pir||S...   181  4e-45
pir||G72556 probable ribosomal protein S4 APE1739 - Aeropyrum pe...   180  7e-45
sp|Q9YB58|RS4_AERPE 30S RIBOSOMAL PROTEIN S4P                         180  7e-45
emb|CAC12161.1| (AL445066) probable 30S ribosomal protein S4 [Th...   179  2e-44
sp|P39467|RS4_SULAC 30S RIBOSOMAL PROTEIN S4P >gi|629415|pir||S4...   173  2e-42
gb|AAG19518.1| (AE005043) 30S ribosomal protein S4P; Rps4p [Halo...   166  2e-40
pir||T43938 ribosomal protein S4 [validated] - Halobacterium sal...   158  3e-38
sp|Q00862|RS4_HALMA 30S RIBOSOMAL PROTEIN S4P (HMAS4) >gi|322343...   151  4e-36
gi|6325176 Ribosomal protein S9A (S13) (rp21) (YS11); Rps9ap [Sa...   128  4e-29
gi|6319666 Ribosomal protein S9B (S13) (rp21) (YS11); Rps9bp [Sa...   127  8e-29
pir||T49955 40S ribosomal protein-like - Arabidopsis thaliana >g...   125  2e-28
sp|O59675|RS9B_SCHPO 40S RIBOSOMAL PROTEIN S9-B >gi|7489991|pir|...   125  3e-28
pir||T43516 ribosomal protein S9 homolog - fission yeast  (Schiz...   125  3e-28
sp|Q09757|RS9A_SCHPO 40S RIBOSOMAL PROTEIN S9-A >gi|2119064|pir|...   122  4e-27
sp|P52810|RS9_PODAN 40S RIBOSOMAL PROTEIN S9 (S7) >gi|1321917|em...   121  6e-27
gi|11424381 ribosomal protein S9 [Homo sapiens]                       121  6e-27
sp|P29314|RS9_RAT 40S RIBOSOMAL PROTEIN S9 >gi|112274|pir||S2149...   120  1e-26
dbj|BAB10209.1| (AB010077) 40S ribosomal protein S9 [Arabidopsis...   120  1e-26
gi|4506745 ribosomal protein S9 [Homo sapiens] >gi|1173285|sp|P4...   119  2e-26
gb|AAF50249.1| (AE003551) RpS9 gene product [alt 2] [Drosophila ...   118  3e-26
pir||T43321 ribosomal protein S9 - fission yeast (Schizosaccharo...   117  7e-26
sp|P17959|RS9_TRYBB PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|102109...   117  9e-26
sp|Q25555|RS9_NAEFO 40S RIBOSOMAL PROTEIN S9 >gi|1353747|gb|AAB0...   117  9e-26
dbj|BAA78592.1| (AU066528) 40S ribosomal protein S9 [Chlamydomon...   115  3e-25
sp|P14132|RS9_DICDI 40S RIBOSOMAL PROTEIN S9 (40S RIBOSOMAL PROT...   115  5e-25
sp|Q20228|RS9_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|750307...   113  1e-24
emb|CAB62915.1| (AL080243) bA12M9.1 (novel RPS9 (40S Ribosomal p...   113  1e-24
gb|AAF50250.1| (AE003551) RpS9 gene product [alt 1] [Drosophila ...    96  2e-19
sp|Q29197|RS9_PIG 40S RIBOSOMAL PROTEIN S9                             94  1e-18
sp|P55935|RS9_DROME 40S RIBOSOMAL PROTEIN S9                           94  1e-18
sp|O15612|RS9_ENTHI 40S RIBOSOMAL PROTEIN S9 >gi|2350964|dbj|BAA...    90  1e-17
emb|CAB56530.1| (X15384) v12 [Dictyostelium discoideum]                80  2e-14
emb|CAB64903.1| (AJ245655) 40S ribosomal protein S9 [Cyanophora ...    70  1e-11

>pir||C75171 ssu ribosomal protein s4p (rps4p) PAB0361 - Pyrococcus abyssi
           (strain Orsay) >gi|5457960|emb|CAB49450.1| (AJ248284)
           SSU ribosomal protein S4P (rps4P) [Pyrococcus abyssi]
           Length = 180
           
 Score =  363 bits (921), Expect = e-100
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA
Sbjct: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60

Query: 61  ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ
Sbjct: 61  ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA 180
           ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA
Sbjct: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA 180


>sp|O59306|RS4_PYRHO 30S RIBOSOMAL PROTEIN S4P >gi|7440182|pir||H71043 probable
           ribosomal protein S4 - Pyrococcus horikoshii
           >gi|3258069|dbj|BAA30752.1| (AP000006) 180aa long
           hypothetical 30S ribosomal protein S4 [Pyrococcus
           horikoshii]
           Length = 180
           
 Score =  359 bits (911), Expect = 1e-98
 Identities = 177/180 (98%), Positives = 179/180 (99%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA
Sbjct: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60

Query: 61  ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           ARGKQAEIEREQLL+RLKRLGLLPEDAVLDDVLSLT+EDILERRLQTIVYKKGLARTMRQ
Sbjct: 61  ARGKQAEIEREQLLSRLKRLGLLPEDAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQ 120

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA 180
           ARQLIVHGHIEVNGQIIRSPSYLVLKEEED ITYARTSPFANPQHPERMMIEKAKQGGEA
Sbjct: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPFANPQHPERMMIEKAKQGGEA 180


>sp|P54020|RS4_METJA 30S RIBOSOMAL PROTEIN S4P >gi|2129270|pir||G64323 ribosomal protein
           S4 - Methanococcus jannaschii >gi|1498964|gb|AAB98170.1|
           (U67475) SSU ribosomal protein S4P (rpsD) [Methanococcus
           jannaschii]
           Length = 187
           
 Score =  212 bits (534), Expect = 2e-54
 Identities = 106/173 (61%), Positives = 135/173 (77%), Gaps = 2/173 (1%)

Query: 1   MGDPKRQRKK-YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLL 59
           MGDP+R+ KK YETP HPWIKER++RE+ L  KY L+ K+E+WK ET L+ +RR+ARRL+
Sbjct: 1   MGDPRRRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLI 60

Query: 60  AARGKQAEIEREQLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTM 118
           + R +Q   E  QL   LK+ G+L  E+  LDDVLSLT+EDILERRLQT+V++KGLART 
Sbjct: 61  SDRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTP 120

Query: 119 RQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMI 171
           RQARQLIVHGHI VNG+++ +PSY+V  EEED I+YA+ SPF +  HPER  I
Sbjct: 121 RQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAKI 173


>gi|11499865 SSU ribosomal protein S4P (rps4P) [Archaeoglobus fulgidus]
           >gi|3914900|sp|O28000|RS4_ARCFU 30S RIBOSOMAL PROTEIN
           S4P >gi|7440185|pir||D69535 SSU ribosomal protein S4P
           (rps4P) homolog - Archaeoglobus fulgidus
           >gi|2648246|gb|AAB88980.1| (AE000947) SSU ribosomal
           protein S4P (rps4P) [Archaeoglobus fulgidus]
           Length = 172
           
 Score =  185 bits (466), Expect = 2e-46
 Identities = 90/170 (52%), Positives = 126/170 (73%), Gaps = 6/170 (3%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDPKR RKKY TP HPW K RL++E  L+ KY L+NK+ELW+ +  L+ +RR AR LLA
Sbjct: 1   MGDPKRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLA 60

Query: 61  A---RGKQAEIER---EQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGL 114
                GK+ EI +   + ++ +L ++G+LPE+A LDD+L+L++ED LERRLQT+VY++GL
Sbjct: 61  EIGLPGKEGEIAKAKAQTVIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYRQGL 120

Query: 115 ARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQ 164
           ART++QARQ I HGHI V+G+ + SPS++V KE E  I++ R SP A  +
Sbjct: 121 ARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSPLAKTE 170


>sp|O26142|RS4_METTH 30S RIBOSOMAL PROTEIN S4P >gi|7440184|pir||A69145 ribosomal protein
           S4 - Methanobacterium thermoautotrophicum  (strain Delta
           H) >gi|2621071|gb|AAB84543.1| (AE000796) ribosomal
           protein S9 (E.coli S4) [Methanobacterium
           thermoautotrophicum]
           Length = 171
           
 Score =  183 bits (459), Expect = 1e-45
 Identities = 86/159 (54%), Positives = 117/159 (73%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MG P++ RKKY+TPPHPW  ER+  E  L+ KY LKNKKE+WK ET ++ +RR AR LL 
Sbjct: 1   MGHPRKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLG 60

Query: 61  ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
              +    EREQLL  L R G+L E A L+DVL LT+ED+L RRLQT+V+K+GLART+++
Sbjct: 61  MASEHTGKEREQLLGHLVRTGILNEGAKLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKE 120

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159
           ARQ+++HGHI ++G+ I +P Y+V + EED I +  +SP
Sbjct: 121 ARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159


>gb|AAK40435.1| SSU ribosomal protein S4AB (rps4AB) [Sulfolobus solfataricus]
           Length = 181
           
 Score =  181 bits (455), Expect = 4e-45
 Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 6/180 (3%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDPK+ RKK+ETP HPWIKER+  E+ L+ KY L+NK+E+W  ++ ++ FR +AR LLA
Sbjct: 1   MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA 60

Query: 61  ARGKQAEIEREQLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMR 119
               +  +  +QL+ +L ++GLL  E A +DD+LSLT +D+LERRLQTIVYKKGL+ T+ 
Sbjct: 61  LPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIY 120

Query: 120 QARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGE 179
           QARQLI HGHI VNG+ + SP Y+V  +EE+ I Y  TS F +     R  +   ++GGE
Sbjct: 121 QARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKS-----RPPVMSQQEGGE 175


>sp|P95987|RS4_SULSO 30S RIBOSOMAL PROTEIN S4P >gi|7440183|pir||S75415 probable
           ribosomal protein S4 - Sulfolobus solfataricus
           >gi|1707821|emb|CAA69529.1| (Y08257) ribosomal protein
           S4 [Sulfolobus solfataricus]
           Length = 181
           
 Score =  181 bits (455), Expect = 4e-45
 Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 6/180 (3%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDPK+ RKK+ETP HPWIKER+  E+ L+ KY L+NK+E+W  ++ ++ FR +AR LLA
Sbjct: 1   MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA 60

Query: 61  ARGKQAEIEREQLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMR 119
               +  +  +QL+ +L ++GLL  E A +DD+LSLT +D+LERRLQTIVYKKGL+ T+ 
Sbjct: 61  LPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIY 120

Query: 120 QARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGE 179
           QARQLI HGHI VNG+ + SP Y+V  +EE+ I Y  TS F +     R  +   ++GGE
Sbjct: 121 QARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKS-----RPPVMSQQEGGE 175


>pir||G72556 probable ribosomal protein S4 APE1739 - Aeropyrum pernix  (strain
           K1) >gi|5105427|dbj|BAA80740.1| (AP000062) 173aa long
           hypothetical 30S ribosomal protein S4 [Aeropyrum pernix]
           Length = 173
           
 Score =  180 bits (453), Expect = 7e-45
 Identities = 95/164 (57%), Positives = 117/164 (70%), Gaps = 7/164 (4%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDP++ RKK+E P HPWIKERL+RER LM +Y L+NKKELWK ET  + FR RAR LL 
Sbjct: 3   MGDPRKPRKKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLL- 61

Query: 61  ARGKQAEIEREQ---LLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLAR 116
             G   E+ RE    L+  L R+GL+    V +D+VL +  E +LERRLQTIVYKKGLA+
Sbjct: 62  --GLPPEVRREASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAK 119

Query: 117 TMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
           T+ QARQL+VHGHI + G+ + SP YLV +EEE  I YA  SPF
Sbjct: 120 TIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 163


>sp|Q9YB58|RS4_AERPE 30S RIBOSOMAL PROTEIN S4P
           Length = 171
           
 Score =  180 bits (453), Expect = 7e-45
 Identities = 95/164 (57%), Positives = 117/164 (70%), Gaps = 7/164 (4%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           MGDP++ RKK+E P HPWIKERL+RER LM +Y L+NKKELWK ET  + FR RAR LL 
Sbjct: 1   MGDPRKPRKKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLL- 59

Query: 61  ARGKQAEIEREQ---LLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLAR 116
             G   E+ RE    L+  L R+GL+    V +D+VL +  E +LERRLQTIVYKKGLA+
Sbjct: 60  --GLPPEVRREASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAK 117

Query: 117 TMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
           T+ QARQL+VHGHI + G+ + SP YLV +EEE  I YA  SPF
Sbjct: 118 TIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161


>emb|CAC12161.1| (AL445066) probable 30S ribosomal protein S4 [Thermoplasma
           acidophilum]
           Length = 199
           
 Score =  179 bits (449), Expect = 2e-44
 Identities = 92/174 (52%), Positives = 117/174 (66%), Gaps = 3/174 (1%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRL-- 58
           MGDPK   KKY TP HPW KER+D E  ++ KY LKNKKE+W+ E  L + R +AR L  
Sbjct: 1   MGDPKFHHKKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRA 60

Query: 59  -LAARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLART 117
            L      A+ + E+++ RL R  LL E+A LDDVLSLT+E+IL+RRLQTIV++K LA +
Sbjct: 61  RLRTNDVNAQKQLERMIKRLNRYKLLSENATLDDVLSLTVENILDRRLQTIVFRKNLAIS 120

Query: 118 MRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMI 171
           +RQARQLI HGHI V G+ +  P  LV  ++EDTI Y   SP AN  HP R  +
Sbjct: 121 VRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSPVANELHPIRQAL 174


>sp|P39467|RS4_SULAC 30S RIBOSOMAL PROTEIN S4P >gi|629415|pir||S47021 ribosomal protein
           S4 - Sulfolobus acidocaldarius
           >gi|517288|emb|CAA56478.1| (X80194) ribosomal protein S4
           [Sulfolobus acidocaldarius]
           Length = 160
           
 Score =  173 bits (433), Expect = 2e-42
 Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 14  PPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQL 73
           P HPWIK  L +E++L+ KY L+NKKE+W  +T ++NFR +AR LLA    +  I  +QL
Sbjct: 3   PSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIREKQL 62

Query: 74  LARLKRLGLLPED-AVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEV 132
           + +L R+G+L +D + LDD+LSLT E+ LERRLQTIVYKKGLART+ QARQLI HGHI +
Sbjct: 63  IQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAI 122

Query: 133 NGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERM 169
           +G+ + SP Y+VL+ EED I Y  TSPF    H  ++
Sbjct: 123 SGRKVTSPGYVVLRGEEDLIDYYPTSPFKQKIHHHKV 159


>gb|AAG19518.1| (AE005043) 30S ribosomal protein S4P; Rps4p [Halobacterium sp.
           NRC-1]
           Length = 170
           
 Score =  166 bits (416), Expect = 2e-40
 Identities = 81/168 (48%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           M  P    K YETP HP+  ER+  E  L+ +Y LKNK+ELW+ +++L+++RR ARRLL 
Sbjct: 1   MALPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL- 59

Query: 61  ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
             G+   +  E+ +ARL+R+G+L E+  LDDVLSL + D+LERRLQT+VY++GLA TM Q
Sbjct: 60  --GQTGTVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQ 117

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPER 168
           ARQ + HGH+ V+G  +  PSY V   EE+T+ +  TS   +  HP R
Sbjct: 118 ARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETSDLTDELHPAR 165


>pir||T43938 ribosomal protein S4 [validated] - Halobacterium salinarum
           >gi|6172228|dbj|BAA85896.1| (AB030282) ribosomal protein
           HS4 [Halobacterium halobium]
           Length = 169
           
 Score =  158 bits (396), Expect = 3e-38
 Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 4/168 (2%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           M  P    K YETP HP+  ER+  E  L+ +Y LKNK+ELW+ +++L+++RR  R+LL 
Sbjct: 1   MALPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRRE-RQLL- 58

Query: 61  ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
             G+   +  E+ +ARL+R+G+L E+  LDDVLSL + D+LERRLQT+VY++GLA TM Q
Sbjct: 59  --GQTGTVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQ 116

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPER 168
           ARQ + HGH+ V+G  +  PSY V   EE+T+ +  TS   +  HP R
Sbjct: 117 ARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETSDLTDELHPAR 164


>sp|Q00862|RS4_HALMA 30S RIBOSOMAL PROTEIN S4P (HMAS4) >gi|322343|pir||B44126 ribosomal
           protein S4 [similarity] - Haloarcula marismortui
           >gi|148771|gb|AAA73210.1| (M87833) ribosomal protein
           HmaS4 [Haloarcula marismortui]
           Length = 171
           
 Score =  151 bits (378), Expect = 4e-36
 Identities = 78/160 (48%), Positives = 106/160 (65%), Gaps = 1/160 (0%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEI 68
           K YETP HP+  ER+  E  L+ +Y LKNK+ELW+ +++L+ +RR AR+LL + G+  E 
Sbjct: 8   KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEH-ET 66

Query: 69  EREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHG 128
           E E+ LARLKR G+L E   LDDVLSL + D+LERRLQT+VY+KG A T  QARQ IVHG
Sbjct: 67  ESEEFLARLKRYGILNEQDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHG 126

Query: 129 HIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPER 168
           HI ++   +  P   V    E ++ +   S  ++  HPER
Sbjct: 127 HIVLDDARVTRPGMTVETAVESSVGFDEHSSLSDELHPER 166


>gi|6325176 Ribosomal protein S9A (S13) (rp21) (YS11); Rps9ap [Saccharomyces
           cerevisiae] >gi|6094198|sp|O13516|RS9A_YEAST 40S
           RIBOSOMAL PROTEIN S9-A (S13) (YS11) (RP21) (YP28)
           >gi|101575|pir||S16822 ribosomal protein S9.e.A,
           cytosolic - yeast (Saccharomyces cerevisiae)
           >gi|218515|dbj|BAA00626.1| (D00724) YS11 [Saccharomyces
           cerevisiae] >gi|2347168|gb|AAB68268.1| (U41849) Ypl081wp
           [Saccharomyces cerevisiae]
           Length = 197
           
 Score =  128 bits (319), Expect = 4e-29
 Identities = 82/183 (44%), Positives = 105/183 (56%), Gaps = 6/183 (3%)

Query: 4   PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
           P+   K Y TP  P+   RLD E  L  ++ LKNKKE+++   QL   RR AR LL    
Sbjct: 5   PRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDE 64

Query: 64  KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           K  +   E   L+ RL R+G+L ED   LD VL+L +ED LERRLQT VYK GLA+++  
Sbjct: 65  KDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHH 124

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANP-QHPERMMIEKAKQG 177
           AR LI   HI V  QI+  PS++V  + E  I +A TSPF  A P +   R    KA+  
Sbjct: 125 ARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEAS 184

Query: 178 GEA 180
           GEA
Sbjct: 185 GEA 187


>gi|6319666 Ribosomal protein S9B (S13) (rp21) (YS11); Rps9bp [Saccharomyces
           cerevisiae] >gi|585935|sp|P05755|RS9B_YEAST 40S
           RIBOSOMAL PROTEIN S9-B (S13) (YS11) (RP21) (YP28)
           >gi|320844|pir||S31287 ribosomal protein S9.e.B,
           cytosolic - yeast (Saccharomyces cerevisiae)
           >gi|172795|gb|AAB59327.1| (M88650) ribosomal protein S13
           [Saccharomyces cerevisiae] >gi|536552|emb|CAA85151.1|
           (Z36058) ORF YBR189w [Saccharomyces cerevisiae]
           >gi|575916|gb|AAB60283.1| (U02073) ribosomal protein S13
           [Saccharomyces cerevisiae]
           Length = 195
           
 Score =  127 bits (316), Expect = 8e-29
 Identities = 81/183 (44%), Positives = 105/183 (57%), Gaps = 6/183 (3%)

Query: 4   PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
           P+   K Y TP  P+   RLD E  L  ++ LKNK+E+++   QL   RR AR LL    
Sbjct: 5   PRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDE 64

Query: 64  KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           K  +   E   L+ RL R+G+L ED   LD VL+L +ED LERRLQT VYK GLA+++  
Sbjct: 65  KDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHH 124

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANP-QHPERMMIEKAKQG 177
           AR LI   HI V  QI+  PS++V  + E  I +A TSPF  A P +   R    KA+  
Sbjct: 125 ARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEAS 184

Query: 178 GEA 180
           GEA
Sbjct: 185 GEA 187


>pir||T49955 40S ribosomal protein-like - Arabidopsis thaliana
           >gi|7671489|emb|CAB89330.1| (AL353993) 40S ribosomal
           protein-like [Arabidopsis thaliana]
           Length = 198
           
 Score =  125 bits (312), Expect = 2e-28
 Identities = 75/181 (41%), Positives = 105/181 (57%), Gaps = 9/181 (4%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
           K ++ P  P+ KERLD E  L+ +Y L+NK+ELW+ +  L   R  AR LL    K    
Sbjct: 12  KTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRR 71

Query: 68  -IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
             E E LL R+ R GLL E    LD VL+LT+E+ LERRLQTIV+K G+A+++  +R LI
Sbjct: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLI 131

Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFAN------PQHPERMMIEKAKQGGE 179
              HI V  Q++  PS++V  + +  I +A TSPF         +  E+   +KA  GG+
Sbjct: 132 RQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGGD 191

Query: 180 A 180
           A
Sbjct: 192 A 192


>sp|O59675|RS9B_SCHPO 40S RIBOSOMAL PROTEIN S9-B >gi|7489991|pir||T40083 40s ribosomal
           protein s9-b - fission yeast  (Schizosaccharomyces
           pombe) >gi|3006148|emb|CAA18389.1| (AL022299) 40s
           ribosomal protein s9-b [Schizosaccharomyces pombe]
           Length = 192
           
 Score =  125 bits (311), Expect = 3e-28
 Identities = 74/181 (40%), Positives = 104/181 (56%), Gaps = 5/181 (2%)

Query: 4   PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
           P++Q K Y+ P  P+   RLD E  L  +Y L+NK E+W+    L   RR AR LL    
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 64  KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           K  +   E   ++ RL RLG+L E  + LD VL+L IED LERRLQT V+K GLA+++  
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
           AR LI   HI V  QI+  PS++V  + +  I +A +SP+    P   +R  +   ++GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184

Query: 179 E 179
           E
Sbjct: 185 E 185


>pir||T43516 ribosomal protein S9 homolog - fission yeast  (Schizosaccharomyces
           pombe) (fragment) >gi|5381275|dbj|BAA82319.1| (AB029515)
           ribosomal protein S9 homolog [Schizosaccharomyces pombe]
           Length = 189
           
 Score =  125 bits (311), Expect = 3e-28
 Identities = 74/181 (40%), Positives = 104/181 (56%), Gaps = 5/181 (2%)

Query: 4   PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
           P++Q K Y+ P  P+   RLD E  L  +Y L+NK E+W+    L   RR AR LL    
Sbjct: 2   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 61

Query: 64  KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           K  +   E   ++ RL RLG+L E  + LD VL+L IED LERRLQT V+K GLA+++  
Sbjct: 62  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 121

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
           AR LI   HI V  QI+  PS++V  + +  I +A +SP+    P   +R  +   ++GG
Sbjct: 122 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 181

Query: 179 E 179
           E
Sbjct: 182 E 182


>sp|Q09757|RS9A_SCHPO 40S RIBOSOMAL PROTEIN S9-A >gi|2119064|pir||S62409 40s ribosomal
           protein S9 - fission yeast  (Schizosaccharomyces pombe)
           >gi|984704|emb|CAA90851.1| (Z54142) 40s ribosomal
           protein S9 [Schizosaccharomyces pombe]
           Length = 191
           
 Score =  122 bits (302), Expect = 4e-27
 Identities = 74/181 (40%), Positives = 106/181 (57%), Gaps = 6/181 (3%)

Query: 4   PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
           P++Q K Y+ P  P+   RLD E  L  +Y L+NK E+W+    L   RR AR LL    
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 64  KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           K  +   E   ++ RL RLG+L E  + LD VL+L IED LERRLQT V+K GLA+++  
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
           AR LI   HI V  QI+  PS++V  + +  I +A +SP+    P   +R  + ++++GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL-RSQEGG 183

Query: 179 E 179
           E
Sbjct: 184 E 184


>sp|P52810|RS9_PODAN 40S RIBOSOMAL PROTEIN S9 (S7) >gi|1321917|emb|CAA65433.1| (X96613)
           cytoplasmic ribosomal protein S7 [Podospora anserina]
           Length = 190
           
 Score =  121 bits (300), Expect = 6e-27
 Identities = 76/181 (41%), Positives = 106/181 (57%), Gaps = 6/181 (3%)

Query: 4   PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
           P+   K  + P  P+   RLD E  L+ +Y L+NK+E+W+    L   RR AR LL    
Sbjct: 3   PRSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDE 62

Query: 64  KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
           K  +   E   L+ RL R+G+L E  + LD VL+L  ED LERRLQT+VYK GLA+++  
Sbjct: 63  KDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHH 122

Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAK--QGG 178
           AR LI   HI V  QI+  PS++V  + +  I +A TSPF   + P R+  +KAK  +GG
Sbjct: 123 ARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGR-PGRVRRKKAKAAEGG 181

Query: 179 E 179
           +
Sbjct: 182 D 182


>gi|11424381 ribosomal protein S9 [Homo sapiens]
           Length = 194
           
 Score =  121 bits (300), Expect = 6e-27
 Identities = 72/173 (41%), Positives = 103/173 (58%), Gaps = 4/173 (2%)

Query: 8   RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
           RK Y TP  P+ K RLD+E  L+ +Y L+NK+E+W+ +  L   R+ AR LL    K   
Sbjct: 10  RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69

Query: 68  --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
              E   LL RL R+G+L E  + LD +L L IED LERRLQT V+K GLA+++  AR L
Sbjct: 70  RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129

Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
           I   HI V  Q++  PS++V  + +  I ++  SP+   + P R+  + AK+G
Sbjct: 130 IRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR-PGRVKRKNAKKG 181


>sp|P29314|RS9_RAT 40S RIBOSOMAL PROTEIN S9 >gi|112274|pir||S21497 ribosomal protein
           S9, cytosolic [validated] - rat
           >gi|57143|emb|CAA47013.1| (X66370) ribosomal protein S9
           [Rattus norvegicus]
           Length = 194
           
 Score =  120 bits (297), Expect = 1e-26
 Identities = 72/173 (41%), Positives = 103/173 (58%), Gaps = 4/173 (2%)

Query: 8   RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
           RK Y TP  P+ K RLD+E  L+ +Y L+NK+E+W+ +  L   R+ AR LL    K   
Sbjct: 10  RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69

Query: 68  --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
              E   LL RL R+G+L E  + LD +L L IED LERRLQT V+K GLA+++  AR L
Sbjct: 70  RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129

Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
           I   HI V  Q++  PS++V  + +  I ++  SP+   + P R+  + AK+G
Sbjct: 130 IRQRHIRVLKQVVNIPSFIVRLDSQKHIDFSLLSPYGGGR-PGRVKRKNAKKG 181


>dbj|BAB10209.1| (AB010077) 40S ribosomal protein S9 [Arabidopsis thaliana]
           Length = 197
           
 Score =  120 bits (297), Expect = 1e-26
 Identities = 71/174 (40%), Positives = 101/174 (57%), Gaps = 4/174 (2%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
           K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K    
Sbjct: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRR 71

Query: 68  -IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
             E E LL R+ R GLL E    LD VL+LT+E+ LERRLQTIV+K G+A+++  AR LI
Sbjct: 72  IFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLI 131

Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGE 179
              HI V  Q++  PS++V  E +  + ++ TSPF   + P R+     + G +
Sbjct: 132 RQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGR-PGRVKRRNERAGAK 184


>gi|4506745 ribosomal protein S9 [Homo sapiens] >gi|1173285|sp|P46781|RS9_HUMAN
           40S RIBOSOMAL PROTEIN S9 >gi|1362936|pir||S55917
           ribosomal protein S9, cytosolic - human
           >gi|550023|gb|AAA85659.1| (U14971) ribosomal protein S9
           [Homo sapiens] >gi|1096943|prf||2113200F ribosomal
           protein S9 [Homo sapiens]
           Length = 194
           
 Score =  119 bits (296), Expect = 2e-26
 Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 4/173 (2%)

Query: 8   RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
           RK Y TP  P+ K RLD+E  L+ +Y L+NK+E+W+ +  L   R+ AR LL    K   
Sbjct: 10  RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69

Query: 68  --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
              E   LL RL RLG+L E  + LD +L L IED LERRLQT V+K GLA+++  AR L
Sbjct: 70  RLFEGNALLRRLVRLGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129

Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
           I   HI V  Q++  PS++V  + +  I ++  SP      P R+  + AK+G
Sbjct: 130 IRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP-TGVGRPGRVKRKNAKKG 181


>gb|AAF50249.1| (AE003551) RpS9 gene product [alt 2] [Drosophila melanogaster]
           Length = 195
           
 Score =  118 bits (294), Expect = 3e-26
 Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 5/175 (2%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
           K Y TP  P+ K RLD+E  ++ +Y L+NK+E+W+ +  L   R+ AR LL    K  + 
Sbjct: 12  KTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKR 71

Query: 68  -IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
             +   LL RL R+G+L E  + LD VL L IED LERRLQT V+K GLA+++  AR LI
Sbjct: 72  LFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 131

Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
              HI V  Q++  PS++V  + +  I ++  SPF    P   +R  ++K + GG
Sbjct: 132 RQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGG 186


>pir||T43321 ribosomal protein S9 - fission yeast (Schizosaccharomyces pombe)
           (fragment) >gi|2897739|dbj|BAA24900.1| (AB011008)
           ribosomal protein S9 [Schizosaccharomyces pombe]
           Length = 184
           
 Score =  117 bits (291), Expect = 7e-26
 Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 6/178 (3%)

Query: 7   QRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQA 66
           Q K Y+ P  P+   RLD E  L  +Y L+NK E+W+    L   RR AR LL    K  
Sbjct: 1   QSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDP 60

Query: 67  E--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQ 123
           +   E   ++ RL RLG+L E  + LD VL+L IED LERRLQT V+K GLA+++  AR 
Sbjct: 61  KRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARV 120

Query: 124 LIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGGE 179
           LI   HI V  QI+  PS++V  + +  I +A +SP+    P   +R  + ++++GGE
Sbjct: 121 LIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL-RSQEGGE 177


>sp|P17959|RS9_TRYBB PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|102109|pir||S12674 ribosomal
           protein S9.e - Trypanosoma brucei
           >gi|10399|emb|CAA36818.1| (X52586) ald orfU protein (AA
           1 - 190) [Trypanosoma brucei]
           Length = 190
           
 Score =  117 bits (290), Expect = 9e-26
 Identities = 72/172 (41%), Positives = 97/172 (55%), Gaps = 5/172 (2%)

Query: 11  YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--I 68
           ++ P  P+ KERLDRE  L  +Y L+ K+E+W+    L   RR AR LL          +
Sbjct: 11  WKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLL 70

Query: 69  EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVH 127
           E   ++ R    G L ED   LD VLSLT+ DILERRLQT+V+K GLA+++  +R LI  
Sbjct: 71  EGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQ 130

Query: 128 GHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFAN--PQHPERMMIEKAKQG 177
            HI V  QI+  PS++V    E  I +A  SPF N  P   +R+    AK+G
Sbjct: 131 RHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVKRNAAKKG 182


>sp|Q25555|RS9_NAEFO 40S RIBOSOMAL PROTEIN S9 >gi|1353747|gb|AAB01779.1| (U43124) 40s
           ribosomal protein S9 homolog [Naegleria fowleri]
           Length = 186
           
 Score =  117 bits (290), Expect = 9e-26
 Identities = 73/174 (41%), Positives = 97/174 (54%), Gaps = 4/174 (2%)

Query: 6   RQRKKYETPPH-PWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAAR-- 62
           R   K   PP  P+ KER+DRE  +  KY LKNK+E+W+ +  L   R+ AR LL     
Sbjct: 8   RVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPED 67

Query: 63  GKQAEIEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQA 121
             + + E   LL R+ RLGLL E    LD +LSL  ED+LERRLQT+V K GL++++  A
Sbjct: 68  DMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHA 127

Query: 122 RQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAK 175
           RQLI   HI V  Q +  PS++V  + E  I  +  S       P RM  +K K
Sbjct: 128 RQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKLK 181


>dbj|BAA78592.1| (AU066528) 40S ribosomal protein S9 [Chlamydomonas sp. HS-5]
           Length = 192
           
 Score =  115 bits (285), Expect = 3e-25
 Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 5/183 (2%)

Query: 1   MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
           +G  +   K ++ P  P+ KERLD E  L+ +Y L+NK+ELW+ +  L   R  AR LL 
Sbjct: 4   IGQYRNYGKTFKKPRRPFEKERLDGELKLVGEYGLRNKRELWRVQMILSKIRNAARNLLQ 63

Query: 61  ARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLART 117
                 +   E + L+ R+ + GLL E    LD VL+L   D LERRLQT+V+K+GLA++
Sbjct: 64  HDEDDTKRLFEGQALMRRMYKYGLLNETQDKLDYVLALQPNDFLERRLQTVVFKQGLAKS 123

Query: 118 MRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAK 175
           +  AR LI   HI V  Q++  PS++V  + +  + +A TSPF    P   +R    K  
Sbjct: 124 IHHARVLIKQNHIRVGKQVVNIPSFMVRVDSQKHVDFALTSPFGGGRPGRCKRKNAGKGA 183

Query: 176 QGG 178
            GG
Sbjct: 184 GGG 186


>sp|P14132|RS9_DICDI 40S RIBOSOMAL PROTEIN S9 (40S RIBOSOMAL PROTEIN 1024) (VEGETATIVE
           SPECIFIC PROTEIN V12) >gi|70880|pir||R3DO24 ribosomal
           protein S9.e - slime mold (Dictyostelium discoideum)
           >gi|7353|emb|CAA29844.1| (X06636) rp1024 protein
           [Dictyostelium discoideum]
           Length = 185
           
 Score =  115 bits (284), Expect = 5e-25
 Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 5/176 (2%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
           K   TP  P+ KER+D E  ++ ++ LKNK E+W+ +  L   R+ AR LL    K  + 
Sbjct: 7   KTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKR 66

Query: 68  -IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
             E   LL RL +LG++ E    LD +L+L ++D +ERRLQT+V+K GLA+++  AR LI
Sbjct: 67  IFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLI 126

Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFA--NPQHPERMMIEKAKQGGE 179
              HI V  Q++  PS+LV  E +  +  A TSP A   P    R M +     GE
Sbjct: 127 KGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGE 182


>sp|Q20228|RS9_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|7503070|pir||T22034
           hypothetical protein F40F8.10 - Caenorhabditis elegans
           >gi|3876944|emb|CAA93262.1| (Z69302) predicted using
           Genefinder~Similarity to Rat 40S ribosomal S9
           (SW:RS9_RAT), contains similarity to Pfam domain:
           PF00163 (Ribosomal protein S4/S9 N-terminal domain),
           Score=144.4, E-value=6.7e-40, N=1; PF01479 (S4 domain),
           Score=52.2, E-value=3.>
           Length = 189
           
 Score =  113 bits (281), Expect = 1e-24
 Identities = 69/177 (38%), Positives = 101/177 (56%), Gaps = 5/177 (2%)

Query: 7   QRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQA 66
           Q K  ++P  P+ KERLD+E  L+  + LKNK+E+W+ +  L   R+ AR LL    K  
Sbjct: 8   QSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDP 67

Query: 67  E--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQ 123
           +   E   LL RL ++G+L E  + LD VL L +ED LERRLQT V+K GLA+++  AR 
Sbjct: 68  KRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARI 127

Query: 124 LIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
           LI   HI V  Q++  PS++V  + +  I ++  SP+    P   +R  + K    G
Sbjct: 128 LIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDGAG 184


>emb|CAB62915.1| (AL080243) bA12M9.1 (novel RPS9 (40S Ribosomal protein S9) LIKE
           protein) [Homo sapiens]
           Length = 194
           
 Score =  113 bits (281), Expect = 1e-24
 Identities = 69/173 (39%), Positives = 101/173 (57%), Gaps = 4/173 (2%)

Query: 8   RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
           RK Y TP   + K RLD+E  L+++Y L+NK+E+W+ +  L   R+ AR LL    K   
Sbjct: 10  RKTYVTPRRSFEKSRLDQELKLIEEYGLRNKREVWRVKFTLAKIRKAARELLTLDQKDPR 69

Query: 68  --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
              E   LL RL  +G+L E  + LD +L L IED LERRLQT V+K GLA+++  AR L
Sbjct: 70  RLFEGNALLWRLVCIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129

Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
           I   H  V  Q++  PS++V  + +  I ++  SP+   + P R+  + AK+G
Sbjct: 130 IRQRHFRVRKQVVNIPSFIVRLDSQKHIDFSLCSPYGGGR-PGRVKRKNAKKG 181


>gb|AAF50250.1| (AE003551) RpS9 gene product [alt 1] [Drosophila melanogaster]
           Length = 137
           
 Score = 96.3 bits (236), Expect = 2e-19
 Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 3/125 (2%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
           K Y TP  P+ K RLD+E  ++ +Y L+NK+E+W+ +  L   R+ AR LL    K  + 
Sbjct: 12  KTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKR 71

Query: 68  -IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
             +   LL RL R+G+L E  + LD VL L IED LERRLQT V+K GLA+++  AR LI
Sbjct: 72  LFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 131

Query: 126 VHGHI 130
              HI
Sbjct: 132 RQRHI 136


>sp|Q29197|RS9_PIG 40S RIBOSOMAL PROTEIN S9
           Length = 130
           
 Score = 93.6 bits (229), Expect = 1e-18
 Identities = 56/121 (46%), Positives = 73/121 (60%), Gaps = 3/121 (2%)

Query: 8   RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
           RK Y TP  P+ K RLD+E  L+ +Y L+NK+E+W+ +  L   R+ AR LL    K   
Sbjct: 8   RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 67

Query: 68  --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
              E   LL RL R+G+L E  + LD +L L IED LERRLQT V+K GLA ++   R L
Sbjct: 68  RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVL 127

Query: 125 I 125
           I
Sbjct: 128 I 128


>sp|P55935|RS9_DROME 40S RIBOSOMAL PROTEIN S9
           Length = 196
           
 Score = 93.6 bits (229), Expect = 1e-18
 Identities = 64/176 (36%), Positives = 97/176 (54%), Gaps = 6/176 (3%)

Query: 9   KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
           K Y TP  P+ K RLD+E  ++ +Y L NK+E+W+ +  L   R+ AR LL    K A+ 
Sbjct: 12  KTYVTPRRPYEKARLDQELKIIGEYGLXNKREVWRVKYALAKIRKVARELLTLDEKDAKR 71

Query: 68  -IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
             + + L+ RL R+G+L    + LD VL L I+D LERRLQT V+K GLA+++  AR LI
Sbjct: 72  LFQGKSLVRRLVRIGVLKXVRMKLDYVLGLKIQDFLERRLQTQVFKLGLAKSIHHARVLI 131

Query: 126 VHGHIEVNGQIIRSPSYLV-LKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
                 +  +    PS++V L  ++    ++   PF    P   +R  + K + GG
Sbjct: 132 RQRTFVLASRWSTIPSFVVRLDSQKQHSNFSLRCPFGRGRPGRVKRKNLXKNQGGG 187


>sp|O15612|RS9_ENTHI 40S RIBOSOMAL PROTEIN S9 >gi|2350964|dbj|BAA22008.1| (AB002770)
           ribosomal protein S9 [Entamoeba histolytica]
           Length = 144
           
 Score = 90.1 bits (220), Expect = 1e-17
 Identities = 56/137 (40%), Positives = 82/137 (58%), Gaps = 3/137 (2%)

Query: 11  YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--I 68
           Y+TP  P+ +ER D E  L+ ++ LKNKKE+ +    L + R  A+ +L    K  +  +
Sbjct: 8   YKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLL 67

Query: 69  EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVH 127
           E   LL RL  LG+LP D   L+ VL+L  E++LERRLQT+VY+KG  +++  AR LI  
Sbjct: 68  EGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFGKSIHHARVLIRG 127

Query: 128 GHIEVNGQIIRSPSYLV 144
             I+   Q+   PS+LV
Sbjct: 128 KMIKAGKQVGGVPSFLV 144


>emb|CAB56530.1| (X15384) v12 [Dictyostelium discoideum]
           Length = 124
           
 Score = 79.6 bits (193), Expect = 2e-14
 Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 69  EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVH 127
           E   LL RL +LG++ E    LD +L+L ++D +ERRLQT+V+K GLA+++  AR LI  
Sbjct: 8   EGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKG 67

Query: 128 GHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFA--NPQHPERMMIEKAKQGGE 179
            HI V  Q++  PS+LV  E +  +  A TSP A   P    R M +     GE
Sbjct: 68  RHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGE 121


>emb|CAB64903.1| (AJ245655) 40S ribosomal protein S9 [Cyanophora paradoxa]
           Length = 101
           
 Score = 70.2 bits (169), Expect = 1e-11
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query: 89  LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEE 148
           LD VL L I+D LERRLQT V+K GLA+++  AR LI   HI V  QI+  PS++V  + 
Sbjct: 1   LDYVLGLKIQDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVGKQIVNIPSFMVRVDS 60

Query: 149 EDTITYARTSPF 160
           +  I +A TSPF
Sbjct: 61  QKHIDFALTSPF 72


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.136    0.384 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66816255
Number of Sequences: 2977
Number of extensions: 2483240
Number of successful extensions: 9450
Number of sequences better than 1.0e-10: 39
Number of HSP's better than  0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9385
Number of HSP's gapped (non-prelim): 39
length of query: 180
length of database: 189,106,746
effective HSP length: 56
effective length of query: 124
effective length of database: 155,591,474
effective search space: 19293342776
effective search space used: 19293342776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)