BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0361 (rps4P) DE:SSU ribosomal protein S4P (rps4P)
(180 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75171 ssu ribosomal protein s4p (rps4p) PAB0361 - Pyrococc... 363 e-100
sp|O59306|RS4_PYRHO 30S RIBOSOMAL PROTEIN S4P >gi|7440182|pir||H... 359 1e-98
sp|P54020|RS4_METJA 30S RIBOSOMAL PROTEIN S4P >gi|2129270|pir||G... 212 2e-54
gi|11499865 SSU ribosomal protein S4P (rps4P) [Archaeoglobus ful... 185 2e-46
sp|O26142|RS4_METTH 30S RIBOSOMAL PROTEIN S4P >gi|7440184|pir||A... 183 1e-45
gb|AAK40435.1| SSU ribosomal protein S4AB (rps4AB) [Sulfolobus s... 181 4e-45
sp|P95987|RS4_SULSO 30S RIBOSOMAL PROTEIN S4P >gi|7440183|pir||S... 181 4e-45
pir||G72556 probable ribosomal protein S4 APE1739 - Aeropyrum pe... 180 7e-45
sp|Q9YB58|RS4_AERPE 30S RIBOSOMAL PROTEIN S4P 180 7e-45
emb|CAC12161.1| (AL445066) probable 30S ribosomal protein S4 [Th... 179 2e-44
sp|P39467|RS4_SULAC 30S RIBOSOMAL PROTEIN S4P >gi|629415|pir||S4... 173 2e-42
gb|AAG19518.1| (AE005043) 30S ribosomal protein S4P; Rps4p [Halo... 166 2e-40
pir||T43938 ribosomal protein S4 [validated] - Halobacterium sal... 158 3e-38
sp|Q00862|RS4_HALMA 30S RIBOSOMAL PROTEIN S4P (HMAS4) >gi|322343... 151 4e-36
gi|6325176 Ribosomal protein S9A (S13) (rp21) (YS11); Rps9ap [Sa... 128 4e-29
gi|6319666 Ribosomal protein S9B (S13) (rp21) (YS11); Rps9bp [Sa... 127 8e-29
pir||T49955 40S ribosomal protein-like - Arabidopsis thaliana >g... 125 2e-28
sp|O59675|RS9B_SCHPO 40S RIBOSOMAL PROTEIN S9-B >gi|7489991|pir|... 125 3e-28
pir||T43516 ribosomal protein S9 homolog - fission yeast (Schiz... 125 3e-28
sp|Q09757|RS9A_SCHPO 40S RIBOSOMAL PROTEIN S9-A >gi|2119064|pir|... 122 4e-27
sp|P52810|RS9_PODAN 40S RIBOSOMAL PROTEIN S9 (S7) >gi|1321917|em... 121 6e-27
gi|11424381 ribosomal protein S9 [Homo sapiens] 121 6e-27
sp|P29314|RS9_RAT 40S RIBOSOMAL PROTEIN S9 >gi|112274|pir||S2149... 120 1e-26
dbj|BAB10209.1| (AB010077) 40S ribosomal protein S9 [Arabidopsis... 120 1e-26
gi|4506745 ribosomal protein S9 [Homo sapiens] >gi|1173285|sp|P4... 119 2e-26
gb|AAF50249.1| (AE003551) RpS9 gene product [alt 2] [Drosophila ... 118 3e-26
pir||T43321 ribosomal protein S9 - fission yeast (Schizosaccharo... 117 7e-26
sp|P17959|RS9_TRYBB PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|102109... 117 9e-26
sp|Q25555|RS9_NAEFO 40S RIBOSOMAL PROTEIN S9 >gi|1353747|gb|AAB0... 117 9e-26
dbj|BAA78592.1| (AU066528) 40S ribosomal protein S9 [Chlamydomon... 115 3e-25
sp|P14132|RS9_DICDI 40S RIBOSOMAL PROTEIN S9 (40S RIBOSOMAL PROT... 115 5e-25
sp|Q20228|RS9_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|750307... 113 1e-24
emb|CAB62915.1| (AL080243) bA12M9.1 (novel RPS9 (40S Ribosomal p... 113 1e-24
gb|AAF50250.1| (AE003551) RpS9 gene product [alt 1] [Drosophila ... 96 2e-19
sp|Q29197|RS9_PIG 40S RIBOSOMAL PROTEIN S9 94 1e-18
sp|P55935|RS9_DROME 40S RIBOSOMAL PROTEIN S9 94 1e-18
sp|O15612|RS9_ENTHI 40S RIBOSOMAL PROTEIN S9 >gi|2350964|dbj|BAA... 90 1e-17
emb|CAB56530.1| (X15384) v12 [Dictyostelium discoideum] 80 2e-14
emb|CAB64903.1| (AJ245655) 40S ribosomal protein S9 [Cyanophora ... 70 1e-11
>pir||C75171 ssu ribosomal protein s4p (rps4p) PAB0361 - Pyrococcus abyssi
(strain Orsay) >gi|5457960|emb|CAB49450.1| (AJ248284)
SSU ribosomal protein S4P (rps4P) [Pyrococcus abyssi]
Length = 180
Score = 363 bits (921), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA
Sbjct: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
Query: 61 ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ
Sbjct: 61 ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA 180
ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA
Sbjct: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA 180
>sp|O59306|RS4_PYRHO 30S RIBOSOMAL PROTEIN S4P >gi|7440182|pir||H71043 probable
ribosomal protein S4 - Pyrococcus horikoshii
>gi|3258069|dbj|BAA30752.1| (AP000006) 180aa long
hypothetical 30S ribosomal protein S4 [Pyrococcus
horikoshii]
Length = 180
Score = 359 bits (911), Expect = 1e-98
Identities = 177/180 (98%), Positives = 179/180 (99%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA
Sbjct: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
Query: 61 ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
ARGKQAEIEREQLL+RLKRLGLLPEDAVLDDVLSLT+EDILERRLQTIVYKKGLARTMRQ
Sbjct: 61 ARGKQAEIEREQLLSRLKRLGLLPEDAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQ 120
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA 180
ARQLIVHGHIEVNGQIIRSPSYLVLKEEED ITYARTSPFANPQHPERMMIEKAKQGGEA
Sbjct: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPFANPQHPERMMIEKAKQGGEA 180
>sp|P54020|RS4_METJA 30S RIBOSOMAL PROTEIN S4P >gi|2129270|pir||G64323 ribosomal protein
S4 - Methanococcus jannaschii >gi|1498964|gb|AAB98170.1|
(U67475) SSU ribosomal protein S4P (rpsD) [Methanococcus
jannaschii]
Length = 187
Score = 212 bits (534), Expect = 2e-54
Identities = 106/173 (61%), Positives = 135/173 (77%), Gaps = 2/173 (1%)
Query: 1 MGDPKRQRKK-YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLL 59
MGDP+R+ KK YETP HPWIKER++RE+ L KY L+ K+E+WK ET L+ +RR+ARRL+
Sbjct: 1 MGDPRRRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLI 60
Query: 60 AARGKQAEIEREQLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTM 118
+ R +Q E QL LK+ G+L E+ LDDVLSLT+EDILERRLQT+V++KGLART
Sbjct: 61 SDRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTP 120
Query: 119 RQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMI 171
RQARQLIVHGHI VNG+++ +PSY+V EEED I+YA+ SPF + HPER I
Sbjct: 121 RQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAKI 173
>gi|11499865 SSU ribosomal protein S4P (rps4P) [Archaeoglobus fulgidus]
>gi|3914900|sp|O28000|RS4_ARCFU 30S RIBOSOMAL PROTEIN
S4P >gi|7440185|pir||D69535 SSU ribosomal protein S4P
(rps4P) homolog - Archaeoglobus fulgidus
>gi|2648246|gb|AAB88980.1| (AE000947) SSU ribosomal
protein S4P (rps4P) [Archaeoglobus fulgidus]
Length = 172
Score = 185 bits (466), Expect = 2e-46
Identities = 90/170 (52%), Positives = 126/170 (73%), Gaps = 6/170 (3%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDPKR RKKY TP HPW K RL++E L+ KY L+NK+ELW+ + L+ +RR AR LLA
Sbjct: 1 MGDPKRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLA 60
Query: 61 A---RGKQAEIER---EQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGL 114
GK+ EI + + ++ +L ++G+LPE+A LDD+L+L++ED LERRLQT+VY++GL
Sbjct: 61 EIGLPGKEGEIAKAKAQTVIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYRQGL 120
Query: 115 ARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQ 164
ART++QARQ I HGHI V+G+ + SPS++V KE E I++ R SP A +
Sbjct: 121 ARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSPLAKTE 170
>sp|O26142|RS4_METTH 30S RIBOSOMAL PROTEIN S4P >gi|7440184|pir||A69145 ribosomal protein
S4 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621071|gb|AAB84543.1| (AE000796) ribosomal
protein S9 (E.coli S4) [Methanobacterium
thermoautotrophicum]
Length = 171
Score = 183 bits (459), Expect = 1e-45
Identities = 86/159 (54%), Positives = 117/159 (73%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MG P++ RKKY+TPPHPW ER+ E L+ KY LKNKKE+WK ET ++ +RR AR LL
Sbjct: 1 MGHPRKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLG 60
Query: 61 ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
+ EREQLL L R G+L E A L+DVL LT+ED+L RRLQT+V+K+GLART+++
Sbjct: 61 MASEHTGKEREQLLGHLVRTGILNEGAKLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKE 120
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159
ARQ+++HGHI ++G+ I +P Y+V + EED I + +SP
Sbjct: 121 ARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159
>gb|AAK40435.1| SSU ribosomal protein S4AB (rps4AB) [Sulfolobus solfataricus]
Length = 181
Score = 181 bits (455), Expect = 4e-45
Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 6/180 (3%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDPK+ RKK+ETP HPWIKER+ E+ L+ KY L+NK+E+W ++ ++ FR +AR LLA
Sbjct: 1 MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA 60
Query: 61 ARGKQAEIEREQLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMR 119
+ + +QL+ +L ++GLL E A +DD+LSLT +D+LERRLQTIVYKKGL+ T+
Sbjct: 61 LPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIY 120
Query: 120 QARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGE 179
QARQLI HGHI VNG+ + SP Y+V +EE+ I Y TS F + R + ++GGE
Sbjct: 121 QARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKS-----RPPVMSQQEGGE 175
>sp|P95987|RS4_SULSO 30S RIBOSOMAL PROTEIN S4P >gi|7440183|pir||S75415 probable
ribosomal protein S4 - Sulfolobus solfataricus
>gi|1707821|emb|CAA69529.1| (Y08257) ribosomal protein
S4 [Sulfolobus solfataricus]
Length = 181
Score = 181 bits (455), Expect = 4e-45
Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 6/180 (3%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDPK+ RKK+ETP HPWIKER+ E+ L+ KY L+NK+E+W ++ ++ FR +AR LLA
Sbjct: 1 MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA 60
Query: 61 ARGKQAEIEREQLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMR 119
+ + +QL+ +L ++GLL E A +DD+LSLT +D+LERRLQTIVYKKGL+ T+
Sbjct: 61 LPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIY 120
Query: 120 QARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGE 179
QARQLI HGHI VNG+ + SP Y+V +EE+ I Y TS F + R + ++GGE
Sbjct: 121 QARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKS-----RPPVMSQQEGGE 175
>pir||G72556 probable ribosomal protein S4 APE1739 - Aeropyrum pernix (strain
K1) >gi|5105427|dbj|BAA80740.1| (AP000062) 173aa long
hypothetical 30S ribosomal protein S4 [Aeropyrum pernix]
Length = 173
Score = 180 bits (453), Expect = 7e-45
Identities = 95/164 (57%), Positives = 117/164 (70%), Gaps = 7/164 (4%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDP++ RKK+E P HPWIKERL+RER LM +Y L+NKKELWK ET + FR RAR LL
Sbjct: 3 MGDPRKPRKKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLL- 61
Query: 61 ARGKQAEIEREQ---LLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLAR 116
G E+ RE L+ L R+GL+ V +D+VL + E +LERRLQTIVYKKGLA+
Sbjct: 62 --GLPPEVRREASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAK 119
Query: 117 TMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
T+ QARQL+VHGHI + G+ + SP YLV +EEE I YA SPF
Sbjct: 120 TIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 163
>sp|Q9YB58|RS4_AERPE 30S RIBOSOMAL PROTEIN S4P
Length = 171
Score = 180 bits (453), Expect = 7e-45
Identities = 95/164 (57%), Positives = 117/164 (70%), Gaps = 7/164 (4%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
MGDP++ RKK+E P HPWIKERL+RER LM +Y L+NKKELWK ET + FR RAR LL
Sbjct: 1 MGDPRKPRKKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLL- 59
Query: 61 ARGKQAEIEREQ---LLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLAR 116
G E+ RE L+ L R+GL+ V +D+VL + E +LERRLQTIVYKKGLA+
Sbjct: 60 --GLPPEVRREASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAK 117
Query: 117 TMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
T+ QARQL+VHGHI + G+ + SP YLV +EEE I YA SPF
Sbjct: 118 TIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161
>emb|CAC12161.1| (AL445066) probable 30S ribosomal protein S4 [Thermoplasma
acidophilum]
Length = 199
Score = 179 bits (449), Expect = 2e-44
Identities = 92/174 (52%), Positives = 117/174 (66%), Gaps = 3/174 (1%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRL-- 58
MGDPK KKY TP HPW KER+D E ++ KY LKNKKE+W+ E L + R +AR L
Sbjct: 1 MGDPKFHHKKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRA 60
Query: 59 -LAARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLART 117
L A+ + E+++ RL R LL E+A LDDVLSLT+E+IL+RRLQTIV++K LA +
Sbjct: 61 RLRTNDVNAQKQLERMIKRLNRYKLLSENATLDDVLSLTVENILDRRLQTIVFRKNLAIS 120
Query: 118 MRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMI 171
+RQARQLI HGHI V G+ + P LV ++EDTI Y SP AN HP R +
Sbjct: 121 VRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSPVANELHPIRQAL 174
>sp|P39467|RS4_SULAC 30S RIBOSOMAL PROTEIN S4P >gi|629415|pir||S47021 ribosomal protein
S4 - Sulfolobus acidocaldarius
>gi|517288|emb|CAA56478.1| (X80194) ribosomal protein S4
[Sulfolobus acidocaldarius]
Length = 160
Score = 173 bits (433), Expect = 2e-42
Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 14 PPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQL 73
P HPWIK L +E++L+ KY L+NKKE+W +T ++NFR +AR LLA + I +QL
Sbjct: 3 PSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIREKQL 62
Query: 74 LARLKRLGLLPED-AVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEV 132
+ +L R+G+L +D + LDD+LSLT E+ LERRLQTIVYKKGLART+ QARQLI HGHI +
Sbjct: 63 IQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAI 122
Query: 133 NGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERM 169
+G+ + SP Y+VL+ EED I Y TSPF H ++
Sbjct: 123 SGRKVTSPGYVVLRGEEDLIDYYPTSPFKQKIHHHKV 159
>gb|AAG19518.1| (AE005043) 30S ribosomal protein S4P; Rps4p [Halobacterium sp.
NRC-1]
Length = 170
Score = 166 bits (416), Expect = 2e-40
Identities = 81/168 (48%), Positives = 114/168 (67%), Gaps = 3/168 (1%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
M P K YETP HP+ ER+ E L+ +Y LKNK+ELW+ +++L+++RR ARRLL
Sbjct: 1 MALPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL- 59
Query: 61 ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
G+ + E+ +ARL+R+G+L E+ LDDVLSL + D+LERRLQT+VY++GLA TM Q
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQ 117
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPER 168
ARQ + HGH+ V+G + PSY V EE+T+ + TS + HP R
Sbjct: 118 ARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETSDLTDELHPAR 165
>pir||T43938 ribosomal protein S4 [validated] - Halobacterium salinarum
>gi|6172228|dbj|BAA85896.1| (AB030282) ribosomal protein
HS4 [Halobacterium halobium]
Length = 169
Score = 158 bits (396), Expect = 3e-38
Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
M P K YETP HP+ ER+ E L+ +Y LKNK+ELW+ +++L+++RR R+LL
Sbjct: 1 MALPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRRE-RQLL- 58
Query: 61 ARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
G+ + E+ +ARL+R+G+L E+ LDDVLSL + D+LERRLQT+VY++GLA TM Q
Sbjct: 59 --GQTGTVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQ 116
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPER 168
ARQ + HGH+ V+G + PSY V EE+T+ + TS + HP R
Sbjct: 117 ARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETSDLTDELHPAR 164
>sp|Q00862|RS4_HALMA 30S RIBOSOMAL PROTEIN S4P (HMAS4) >gi|322343|pir||B44126 ribosomal
protein S4 [similarity] - Haloarcula marismortui
>gi|148771|gb|AAA73210.1| (M87833) ribosomal protein
HmaS4 [Haloarcula marismortui]
Length = 171
Score = 151 bits (378), Expect = 4e-36
Identities = 78/160 (48%), Positives = 106/160 (65%), Gaps = 1/160 (0%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEI 68
K YETP HP+ ER+ E L+ +Y LKNK+ELW+ +++L+ +RR AR+LL + G+ E
Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEH-ET 66
Query: 69 EREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHG 128
E E+ LARLKR G+L E LDDVLSL + D+LERRLQT+VY+KG A T QARQ IVHG
Sbjct: 67 ESEEFLARLKRYGILNEQDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHG 126
Query: 129 HIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPER 168
HI ++ + P V E ++ + S ++ HPER
Sbjct: 127 HIVLDDARVTRPGMTVETAVESSVGFDEHSSLSDELHPER 166
>gi|6325176 Ribosomal protein S9A (S13) (rp21) (YS11); Rps9ap [Saccharomyces
cerevisiae] >gi|6094198|sp|O13516|RS9A_YEAST 40S
RIBOSOMAL PROTEIN S9-A (S13) (YS11) (RP21) (YP28)
>gi|101575|pir||S16822 ribosomal protein S9.e.A,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|218515|dbj|BAA00626.1| (D00724) YS11 [Saccharomyces
cerevisiae] >gi|2347168|gb|AAB68268.1| (U41849) Ypl081wp
[Saccharomyces cerevisiae]
Length = 197
Score = 128 bits (319), Expect = 4e-29
Identities = 82/183 (44%), Positives = 105/183 (56%), Gaps = 6/183 (3%)
Query: 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
P+ K Y TP P+ RLD E L ++ LKNKKE+++ QL RR AR LL
Sbjct: 5 PRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDE 64
Query: 64 KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
K + E L+ RL R+G+L ED LD VL+L +ED LERRLQT VYK GLA+++
Sbjct: 65 KDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHH 124
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANP-QHPERMMIEKAKQG 177
AR LI HI V QI+ PS++V + E I +A TSPF A P + R KA+
Sbjct: 125 ARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEAS 184
Query: 178 GEA 180
GEA
Sbjct: 185 GEA 187
>gi|6319666 Ribosomal protein S9B (S13) (rp21) (YS11); Rps9bp [Saccharomyces
cerevisiae] >gi|585935|sp|P05755|RS9B_YEAST 40S
RIBOSOMAL PROTEIN S9-B (S13) (YS11) (RP21) (YP28)
>gi|320844|pir||S31287 ribosomal protein S9.e.B,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|172795|gb|AAB59327.1| (M88650) ribosomal protein S13
[Saccharomyces cerevisiae] >gi|536552|emb|CAA85151.1|
(Z36058) ORF YBR189w [Saccharomyces cerevisiae]
>gi|575916|gb|AAB60283.1| (U02073) ribosomal protein S13
[Saccharomyces cerevisiae]
Length = 195
Score = 127 bits (316), Expect = 8e-29
Identities = 81/183 (44%), Positives = 105/183 (57%), Gaps = 6/183 (3%)
Query: 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
P+ K Y TP P+ RLD E L ++ LKNK+E+++ QL RR AR LL
Sbjct: 5 PRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDE 64
Query: 64 KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
K + E L+ RL R+G+L ED LD VL+L +ED LERRLQT VYK GLA+++
Sbjct: 65 KDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHH 124
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANP-QHPERMMIEKAKQG 177
AR LI HI V QI+ PS++V + E I +A TSPF A P + R KA+
Sbjct: 125 ARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEAS 184
Query: 178 GEA 180
GEA
Sbjct: 185 GEA 187
>pir||T49955 40S ribosomal protein-like - Arabidopsis thaliana
>gi|7671489|emb|CAB89330.1| (AL353993) 40S ribosomal
protein-like [Arabidopsis thaliana]
Length = 198
Score = 125 bits (312), Expect = 2e-28
Identities = 75/181 (41%), Positives = 105/181 (57%), Gaps = 9/181 (4%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
K ++ P P+ KERLD E L+ +Y L+NK+ELW+ + L R AR LL K
Sbjct: 12 KTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRR 71
Query: 68 -IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
E E LL R+ R GLL E LD VL+LT+E+ LERRLQTIV+K G+A+++ +R LI
Sbjct: 72 IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLI 131
Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFAN------PQHPERMMIEKAKQGGE 179
HI V Q++ PS++V + + I +A TSPF + E+ +KA GG+
Sbjct: 132 RQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGGD 191
Query: 180 A 180
A
Sbjct: 192 A 192
>sp|O59675|RS9B_SCHPO 40S RIBOSOMAL PROTEIN S9-B >gi|7489991|pir||T40083 40s ribosomal
protein s9-b - fission yeast (Schizosaccharomyces
pombe) >gi|3006148|emb|CAA18389.1| (AL022299) 40s
ribosomal protein s9-b [Schizosaccharomyces pombe]
Length = 192
Score = 125 bits (311), Expect = 3e-28
Identities = 74/181 (40%), Positives = 104/181 (56%), Gaps = 5/181 (2%)
Query: 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
P++Q K Y+ P P+ RLD E L +Y L+NK E+W+ L RR AR LL
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 64 KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
K + E ++ RL RLG+L E + LD VL+L IED LERRLQT V+K GLA+++
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
AR LI HI V QI+ PS++V + + I +A +SP+ P +R + ++GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
Query: 179 E 179
E
Sbjct: 185 E 185
>pir||T43516 ribosomal protein S9 homolog - fission yeast (Schizosaccharomyces
pombe) (fragment) >gi|5381275|dbj|BAA82319.1| (AB029515)
ribosomal protein S9 homolog [Schizosaccharomyces pombe]
Length = 189
Score = 125 bits (311), Expect = 3e-28
Identities = 74/181 (40%), Positives = 104/181 (56%), Gaps = 5/181 (2%)
Query: 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
P++Q K Y+ P P+ RLD E L +Y L+NK E+W+ L RR AR LL
Sbjct: 2 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 61
Query: 64 KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
K + E ++ RL RLG+L E + LD VL+L IED LERRLQT V+K GLA+++
Sbjct: 62 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 121
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
AR LI HI V QI+ PS++V + + I +A +SP+ P +R + ++GG
Sbjct: 122 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 181
Query: 179 E 179
E
Sbjct: 182 E 182
>sp|Q09757|RS9A_SCHPO 40S RIBOSOMAL PROTEIN S9-A >gi|2119064|pir||S62409 40s ribosomal
protein S9 - fission yeast (Schizosaccharomyces pombe)
>gi|984704|emb|CAA90851.1| (Z54142) 40s ribosomal
protein S9 [Schizosaccharomyces pombe]
Length = 191
Score = 122 bits (302), Expect = 4e-27
Identities = 74/181 (40%), Positives = 106/181 (57%), Gaps = 6/181 (3%)
Query: 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
P++Q K Y+ P P+ RLD E L +Y L+NK E+W+ L RR AR LL
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 64 KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
K + E ++ RL RLG+L E + LD VL+L IED LERRLQT V+K GLA+++
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
AR LI HI V QI+ PS++V + + I +A +SP+ P +R + ++++GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL-RSQEGG 183
Query: 179 E 179
E
Sbjct: 184 E 184
>sp|P52810|RS9_PODAN 40S RIBOSOMAL PROTEIN S9 (S7) >gi|1321917|emb|CAA65433.1| (X96613)
cytoplasmic ribosomal protein S7 [Podospora anserina]
Length = 190
Score = 121 bits (300), Expect = 6e-27
Identities = 76/181 (41%), Positives = 106/181 (57%), Gaps = 6/181 (3%)
Query: 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARG 63
P+ K + P P+ RLD E L+ +Y L+NK+E+W+ L RR AR LL
Sbjct: 3 PRSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDE 62
Query: 64 KQAE--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQ 120
K + E L+ RL R+G+L E + LD VL+L ED LERRLQT+VYK GLA+++
Sbjct: 63 KDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHH 122
Query: 121 ARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAK--QGG 178
AR LI HI V QI+ PS++V + + I +A TSPF + P R+ +KAK +GG
Sbjct: 123 ARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGR-PGRVRRKKAKAAEGG 181
Query: 179 E 179
+
Sbjct: 182 D 182
>gi|11424381 ribosomal protein S9 [Homo sapiens]
Length = 194
Score = 121 bits (300), Expect = 6e-27
Identities = 72/173 (41%), Positives = 103/173 (58%), Gaps = 4/173 (2%)
Query: 8 RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
RK Y TP P+ K RLD+E L+ +Y L+NK+E+W+ + L R+ AR LL K
Sbjct: 10 RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69
Query: 68 --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
E LL RL R+G+L E + LD +L L IED LERRLQT V+K GLA+++ AR L
Sbjct: 70 RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129
Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
I HI V Q++ PS++V + + I ++ SP+ + P R+ + AK+G
Sbjct: 130 IRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR-PGRVKRKNAKKG 181
>sp|P29314|RS9_RAT 40S RIBOSOMAL PROTEIN S9 >gi|112274|pir||S21497 ribosomal protein
S9, cytosolic [validated] - rat
>gi|57143|emb|CAA47013.1| (X66370) ribosomal protein S9
[Rattus norvegicus]
Length = 194
Score = 120 bits (297), Expect = 1e-26
Identities = 72/173 (41%), Positives = 103/173 (58%), Gaps = 4/173 (2%)
Query: 8 RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
RK Y TP P+ K RLD+E L+ +Y L+NK+E+W+ + L R+ AR LL K
Sbjct: 10 RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69
Query: 68 --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
E LL RL R+G+L E + LD +L L IED LERRLQT V+K GLA+++ AR L
Sbjct: 70 RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129
Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
I HI V Q++ PS++V + + I ++ SP+ + P R+ + AK+G
Sbjct: 130 IRQRHIRVLKQVVNIPSFIVRLDSQKHIDFSLLSPYGGGR-PGRVKRKNAKKG 181
>dbj|BAB10209.1| (AB010077) 40S ribosomal protein S9 [Arabidopsis thaliana]
Length = 197
Score = 120 bits (297), Expect = 1e-26
Identities = 71/174 (40%), Positives = 101/174 (57%), Gaps = 4/174 (2%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K
Sbjct: 12 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRR 71
Query: 68 -IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
E E LL R+ R GLL E LD VL+LT+E+ LERRLQTIV+K G+A+++ AR LI
Sbjct: 72 IFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLI 131
Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGE 179
HI V Q++ PS++V E + + ++ TSPF + P R+ + G +
Sbjct: 132 RQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGR-PGRVKRRNERAGAK 184
>gi|4506745 ribosomal protein S9 [Homo sapiens] >gi|1173285|sp|P46781|RS9_HUMAN
40S RIBOSOMAL PROTEIN S9 >gi|1362936|pir||S55917
ribosomal protein S9, cytosolic - human
>gi|550023|gb|AAA85659.1| (U14971) ribosomal protein S9
[Homo sapiens] >gi|1096943|prf||2113200F ribosomal
protein S9 [Homo sapiens]
Length = 194
Score = 119 bits (296), Expect = 2e-26
Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 8 RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
RK Y TP P+ K RLD+E L+ +Y L+NK+E+W+ + L R+ AR LL K
Sbjct: 10 RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69
Query: 68 --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
E LL RL RLG+L E + LD +L L IED LERRLQT V+K GLA+++ AR L
Sbjct: 70 RLFEGNALLRRLVRLGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129
Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
I HI V Q++ PS++V + + I ++ SP P R+ + AK+G
Sbjct: 130 IRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP-TGVGRPGRVKRKNAKKG 181
>gb|AAF50249.1| (AE003551) RpS9 gene product [alt 2] [Drosophila melanogaster]
Length = 195
Score = 118 bits (294), Expect = 3e-26
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
K Y TP P+ K RLD+E ++ +Y L+NK+E+W+ + L R+ AR LL K +
Sbjct: 12 KTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKR 71
Query: 68 -IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
+ LL RL R+G+L E + LD VL L IED LERRLQT V+K GLA+++ AR LI
Sbjct: 72 LFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 131
Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
HI V Q++ PS++V + + I ++ SPF P +R ++K + GG
Sbjct: 132 RQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGG 186
>pir||T43321 ribosomal protein S9 - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|2897739|dbj|BAA24900.1| (AB011008)
ribosomal protein S9 [Schizosaccharomyces pombe]
Length = 184
Score = 117 bits (291), Expect = 7e-26
Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 7 QRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQA 66
Q K Y+ P P+ RLD E L +Y L+NK E+W+ L RR AR LL K
Sbjct: 1 QSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDP 60
Query: 67 E--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQ 123
+ E ++ RL RLG+L E + LD VL+L IED LERRLQT V+K GLA+++ AR
Sbjct: 61 KRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARV 120
Query: 124 LIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGGE 179
LI HI V QI+ PS++V + + I +A +SP+ P +R + ++++GGE
Sbjct: 121 LIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL-RSQEGGE 177
>sp|P17959|RS9_TRYBB PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|102109|pir||S12674 ribosomal
protein S9.e - Trypanosoma brucei
>gi|10399|emb|CAA36818.1| (X52586) ald orfU protein (AA
1 - 190) [Trypanosoma brucei]
Length = 190
Score = 117 bits (290), Expect = 9e-26
Identities = 72/172 (41%), Positives = 97/172 (55%), Gaps = 5/172 (2%)
Query: 11 YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--I 68
++ P P+ KERLDRE L +Y L+ K+E+W+ L RR AR LL +
Sbjct: 11 WKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLL 70
Query: 69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVH 127
E ++ R G L ED LD VLSLT+ DILERRLQT+V+K GLA+++ +R LI
Sbjct: 71 EGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQ 130
Query: 128 GHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFAN--PQHPERMMIEKAKQG 177
HI V QI+ PS++V E I +A SPF N P +R+ AK+G
Sbjct: 131 RHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVKRNAAKKG 182
>sp|Q25555|RS9_NAEFO 40S RIBOSOMAL PROTEIN S9 >gi|1353747|gb|AAB01779.1| (U43124) 40s
ribosomal protein S9 homolog [Naegleria fowleri]
Length = 186
Score = 117 bits (290), Expect = 9e-26
Identities = 73/174 (41%), Positives = 97/174 (54%), Gaps = 4/174 (2%)
Query: 6 RQRKKYETPPH-PWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAAR-- 62
R K PP P+ KER+DRE + KY LKNK+E+W+ + L R+ AR LL
Sbjct: 8 RVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPED 67
Query: 63 GKQAEIEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQA 121
+ + E LL R+ RLGLL E LD +LSL ED+LERRLQT+V K GL++++ A
Sbjct: 68 DMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHA 127
Query: 122 RQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAK 175
RQLI HI V Q + PS++V + E I + S P RM +K K
Sbjct: 128 RQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKLK 181
>dbj|BAA78592.1| (AU066528) 40S ribosomal protein S9 [Chlamydomonas sp. HS-5]
Length = 192
Score = 115 bits (285), Expect = 3e-25
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 5/183 (2%)
Query: 1 MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLA 60
+G + K ++ P P+ KERLD E L+ +Y L+NK+ELW+ + L R AR LL
Sbjct: 4 IGQYRNYGKTFKKPRRPFEKERLDGELKLVGEYGLRNKRELWRVQMILSKIRNAARNLLQ 63
Query: 61 ARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLART 117
+ E + L+ R+ + GLL E LD VL+L D LERRLQT+V+K+GLA++
Sbjct: 64 HDEDDTKRLFEGQALMRRMYKYGLLNETQDKLDYVLALQPNDFLERRLQTVVFKQGLAKS 123
Query: 118 MRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAK 175
+ AR LI HI V Q++ PS++V + + + +A TSPF P +R K
Sbjct: 124 IHHARVLIKQNHIRVGKQVVNIPSFMVRVDSQKHVDFALTSPFGGGRPGRCKRKNAGKGA 183
Query: 176 QGG 178
GG
Sbjct: 184 GGG 186
>sp|P14132|RS9_DICDI 40S RIBOSOMAL PROTEIN S9 (40S RIBOSOMAL PROTEIN 1024) (VEGETATIVE
SPECIFIC PROTEIN V12) >gi|70880|pir||R3DO24 ribosomal
protein S9.e - slime mold (Dictyostelium discoideum)
>gi|7353|emb|CAA29844.1| (X06636) rp1024 protein
[Dictyostelium discoideum]
Length = 185
Score = 115 bits (284), Expect = 5e-25
Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
K TP P+ KER+D E ++ ++ LKNK E+W+ + L R+ AR LL K +
Sbjct: 7 KTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKR 66
Query: 68 -IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
E LL RL +LG++ E LD +L+L ++D +ERRLQT+V+K GLA+++ AR LI
Sbjct: 67 IFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLI 126
Query: 126 VHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFA--NPQHPERMMIEKAKQGGE 179
HI V Q++ PS+LV E + + A TSP A P R M + GE
Sbjct: 127 KGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGE 182
>sp|Q20228|RS9_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S9 >gi|7503070|pir||T22034
hypothetical protein F40F8.10 - Caenorhabditis elegans
>gi|3876944|emb|CAA93262.1| (Z69302) predicted using
Genefinder~Similarity to Rat 40S ribosomal S9
(SW:RS9_RAT), contains similarity to Pfam domain:
PF00163 (Ribosomal protein S4/S9 N-terminal domain),
Score=144.4, E-value=6.7e-40, N=1; PF01479 (S4 domain),
Score=52.2, E-value=3.>
Length = 189
Score = 113 bits (281), Expect = 1e-24
Identities = 69/177 (38%), Positives = 101/177 (56%), Gaps = 5/177 (2%)
Query: 7 QRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQA 66
Q K ++P P+ KERLD+E L+ + LKNK+E+W+ + L R+ AR LL K
Sbjct: 8 QSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDP 67
Query: 67 E--IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQ 123
+ E LL RL ++G+L E + LD VL L +ED LERRLQT V+K GLA+++ AR
Sbjct: 68 KRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARI 127
Query: 124 LIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
LI HI V Q++ PS++V + + I ++ SP+ P +R + K G
Sbjct: 128 LIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDGAG 184
>emb|CAB62915.1| (AL080243) bA12M9.1 (novel RPS9 (40S Ribosomal protein S9) LIKE
protein) [Homo sapiens]
Length = 194
Score = 113 bits (281), Expect = 1e-24
Identities = 69/173 (39%), Positives = 101/173 (57%), Gaps = 4/173 (2%)
Query: 8 RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
RK Y TP + K RLD+E L+++Y L+NK+E+W+ + L R+ AR LL K
Sbjct: 10 RKTYVTPRRSFEKSRLDQELKLIEEYGLRNKREVWRVKFTLAKIRKAARELLTLDQKDPR 69
Query: 68 --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
E LL RL +G+L E + LD +L L IED LERRLQT V+K GLA+++ AR L
Sbjct: 70 RLFEGNALLWRLVCIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 129
Query: 125 IVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQG 177
I H V Q++ PS++V + + I ++ SP+ + P R+ + AK+G
Sbjct: 130 IRQRHFRVRKQVVNIPSFIVRLDSQKHIDFSLCSPYGGGR-PGRVKRKNAKKG 181
>gb|AAF50250.1| (AE003551) RpS9 gene product [alt 1] [Drosophila melanogaster]
Length = 137
Score = 96.3 bits (236), Expect = 2e-19
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
K Y TP P+ K RLD+E ++ +Y L+NK+E+W+ + L R+ AR LL K +
Sbjct: 12 KTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKR 71
Query: 68 -IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
+ LL RL R+G+L E + LD VL L IED LERRLQT V+K GLA+++ AR LI
Sbjct: 72 LFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 131
Query: 126 VHGHI 130
HI
Sbjct: 132 RQRHI 136
>sp|Q29197|RS9_PIG 40S RIBOSOMAL PROTEIN S9
Length = 130
Score = 93.6 bits (229), Expect = 1e-18
Identities = 56/121 (46%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 8 RKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE 67
RK Y TP P+ K RLD+E L+ +Y L+NK+E+W+ + L R+ AR LL K
Sbjct: 8 RKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 67
Query: 68 --IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQL 124
E LL RL R+G+L E + LD +L L IED LERRLQT V+K GLA ++ R L
Sbjct: 68 RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVL 127
Query: 125 I 125
I
Sbjct: 128 I 128
>sp|P55935|RS9_DROME 40S RIBOSOMAL PROTEIN S9
Length = 196
Score = 93.6 bits (229), Expect = 1e-18
Identities = 64/176 (36%), Positives = 97/176 (54%), Gaps = 6/176 (3%)
Query: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67
K Y TP P+ K RLD+E ++ +Y L NK+E+W+ + L R+ AR LL K A+
Sbjct: 12 KTYVTPRRPYEKARLDQELKIIGEYGLXNKREVWRVKYALAKIRKVARELLTLDEKDAKR 71
Query: 68 -IEREQLLARLKRLGLLPEDAV-LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
+ + L+ RL R+G+L + LD VL L I+D LERRLQT V+K GLA+++ AR LI
Sbjct: 72 LFQGKSLVRRLVRIGVLKXVRMKLDYVLGLKIQDFLERRLQTQVFKLGLAKSIHHARVLI 131
Query: 126 VHGHIEVNGQIIRSPSYLV-LKEEEDTITYARTSPF--ANPQHPERMMIEKAKQGG 178
+ + PS++V L ++ ++ PF P +R + K + GG
Sbjct: 132 RQRTFVLASRWSTIPSFVVRLDSQKQHSNFSLRCPFGRGRPGRVKRKNLXKNQGGG 187
>sp|O15612|RS9_ENTHI 40S RIBOSOMAL PROTEIN S9 >gi|2350964|dbj|BAA22008.1| (AB002770)
ribosomal protein S9 [Entamoeba histolytica]
Length = 144
Score = 90.1 bits (220), Expect = 1e-17
Identities = 56/137 (40%), Positives = 82/137 (58%), Gaps = 3/137 (2%)
Query: 11 YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--I 68
Y+TP P+ +ER D E L+ ++ LKNKKE+ + L + R A+ +L K + +
Sbjct: 8 YKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLL 67
Query: 69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVH 127
E LL RL LG+LP D L+ VL+L E++LERRLQT+VY+KG +++ AR LI
Sbjct: 68 EGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFGKSIHHARVLIRG 127
Query: 128 GHIEVNGQIIRSPSYLV 144
I+ Q+ PS+LV
Sbjct: 128 KMIKAGKQVGGVPSFLV 144
>emb|CAB56530.1| (X15384) v12 [Dictyostelium discoideum]
Length = 124
Score = 79.6 bits (193), Expect = 2e-14
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVH 127
E LL RL +LG++ E LD +L+L ++D +ERRLQT+V+K GLA+++ AR LI
Sbjct: 8 EGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKG 67
Query: 128 GHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFA--NPQHPERMMIEKAKQGGE 179
HI V Q++ PS+LV E + + A TSP A P R M + GE
Sbjct: 68 RHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGE 121
>emb|CAB64903.1| (AJ245655) 40S ribosomal protein S9 [Cyanophora paradoxa]
Length = 101
Score = 70.2 bits (169), Expect = 1e-11
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 89 LDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEE 148
LD VL L I+D LERRLQT V+K GLA+++ AR LI HI V QI+ PS++V +
Sbjct: 1 LDYVLGLKIQDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVGKQIVNIPSFMVRVDS 60
Query: 149 EDTITYARTSPF 160
+ I +A TSPF
Sbjct: 61 QKHIDFALTSPF 72
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66816255
Number of Sequences: 2977
Number of extensions: 2483240
Number of successful extensions: 9450
Number of sequences better than 1.0e-10: 39
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9385
Number of HSP's gapped (non-prelim): 39
length of query: 180
length of database: 189,106,746
effective HSP length: 56
effective length of query: 124
effective length of database: 155,591,474
effective search space: 19293342776
effective search space used: 19293342776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)