BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0364 (rpl18E) DE:LSU ribosomal protein L18E (rpl18E)
(120 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75171 lsu ribosomal protein l18e (rpl18e) PAB0364 - Pyroco... 241 2e-63
sp|O59302|R18E_PYRHO 50S RIBOSOMAL PROTEIN L18E >gi|7441080|pir|... 228 2e-59
sp|P54022|R18E_METJA 50S RIBOSOMAL PROTEIN L18E >gi|2826259|gb|A... 158 2e-38
pir||B64324 ribosomal protein L29E - Methanococcus jannaschii 158 2e-38
sp|O26145|R18E_METTH 50S RIBOSOMAL PROTEIN L18E >gi|7441081|pir|... 126 1e-28
sp|Q9YB51|R18E_AERPE 50S RIBOSOMAL PROTEIN L18E >gi|7441085|pir|... 125 2e-28
gi|11498727 LSU ribosomal protein L18E (rpl18E) [Archaeoglobus f... 111 4e-24
emb|CAC11576.1| (AL445064) probable 50S ribosomal protein L18 [T... 109 1e-23
pir||T43941 ribosomal protein L18.eR [similarity] - Halobacteriu... 107 4e-23
sp|P12733|R18E_HALMA 50S RIBOSOMAL PROTEIN L18E (HL29) (L19) >gi... 105 2e-22
pdb|1FFK|L Chain L, Crystal Structure Of The Large Ribosomal Sub... 105 2e-22
gb|AAK40432.1| LSU ribosomal protein L18E (rpl18E) [Sulfolobus s... 87 7e-17
sp|P39474|R18E_SULAC 50S RIBOSOMAL PROTEIN L18E (HL29E) >gi|6294... 87 7e-17
sp|P95990|R18E_SULSO 50S RIBOSOMAL PROTEIN L18E >gi|7441083|pir|... 87 7e-17
gb|AAA73213.1| (M87833) ribosomal protein HL29 [Haloarcula maris... 70 1e-11
>pir||F75171 lsu ribosomal protein l18e (rpl18e) PAB0364 - Pyrococcus abyssi
(strain Orsay) >gi|5457963|emb|CAB49453.1| (AJ248284)
LSU ribosomal protein L18E (rpl18E) [Pyrococcus abyssi]
Length = 120
Score = 241 bits (609), Expect = 2e-63
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD
Sbjct: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
Query: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIME 120
MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIME
Sbjct: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIME 120
>sp|O59302|R18E_PYRHO 50S RIBOSOMAL PROTEIN L18E >gi|7441080|pir||D71043 probable
ribosomal protein L18 - Pyrococcus horikoshii
>gi|3258065|dbj|BAA30748.1| (AP000006) 120aa long
hypothetical 50S ribosomal protein L18 [Pyrococcus
horikoshii]
Length = 120
Score = 228 bits (575), Expect = 2e-59
Identities = 111/120 (92%), Positives = 118/120 (97%)
Query: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
MKRTGPTDPNLRRLIR+L+KKSNEE VKIWKD+AWRLERPRRQRAEVNVS+INRYAKDGD
Sbjct: 1 MKRTGPTDPNLRRLIRFLKKKSNEEGVKIWKDLAWRLERPRRQRAEVNVSKINRYAKDGD 60
Query: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIME 120
MIVVPGSVLGAGK+EKKVIVAAWKFSETAR+KI EAGGEAITIEELI+RNPKGSGVIIME
Sbjct: 61 MIVVPGSVLGAGKLEKKVIVAAWKFSETARKKITEAGGEAITIEELIERNPKGSGVIIME 120
>sp|P54022|R18E_METJA 50S RIBOSOMAL PROTEIN L18E >gi|2826259|gb|AAB98173.1| (U67475) LSU
ribosomal protein L18E [Methanococcus jannaschii]
Length = 121
Score = 158 bits (395), Expect = 2e-38
Identities = 77/118 (65%), Positives = 99/118 (83%)
Query: 2 KRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDM 61
K+ T+P L +LI L+++S + + KIWKDIA RL +PRR+RAEVN+S+INRY K+GD+
Sbjct: 3 KKITATNPRLVKLIEILKQESYKNQAKIWKDIARRLAKPRRRRAEVNLSKINRYTKEGDV 62
Query: 62 IVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
++VPG VLGAGK+E KV+VAA+ FSETA++ I+EAGGEAITIEELIKRNPKGS V IM
Sbjct: 63 VLVPGKVLGAGKLEHKVVVAAFAFSETAKKLIKEAGGEAITIEELIKRNPKGSNVKIM 120
>pir||B64324 ribosomal protein L29E - Methanococcus jannaschii
Length = 139
Score = 158 bits (395), Expect = 2e-38
Identities = 77/118 (65%), Positives = 99/118 (83%)
Query: 2 KRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDM 61
K+ T+P L +LI L+++S + + KIWKDIA RL +PRR+RAEVN+S+INRY K+GD+
Sbjct: 21 KKITATNPRLVKLIEILKQESYKNQAKIWKDIARRLAKPRRRRAEVNLSKINRYTKEGDV 80
Query: 62 IVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
++VPG VLGAGK+E KV+VAA+ FSETA++ I+EAGGEAITIEELIKRNPKGS V IM
Sbjct: 81 VLVPGKVLGAGKLEHKVVVAAFAFSETAKKLIKEAGGEAITIEELIKRNPKGSNVKIM 138
>sp|O26145|R18E_METTH 50S RIBOSOMAL PROTEIN L18E >gi|7441081|pir||B69149 ribosomal
protein L29 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621074|gb|AAB84546.1| (AE000796)
ribosomal protein L18 (E.coli L17) [Methanobacterium
thermoautotrophicum]
Length = 121
Score = 126 bits (313), Expect = 1e-28
Identities = 59/120 (49%), Positives = 88/120 (73%)
Query: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
+++ T+PNL +LIR LRKKS++E IWKD+A RLERP R RA VN+S+INR++ + +
Sbjct: 2 VRKITKTNPNLIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSDEDE 61
Query: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIME 120
++VPG VLG+G ++ +V V A FS+TAR KIE AGGE +T+ ++++ NP + I+E
Sbjct: 62 TVLVPGKVLGSGNLDHRVQVVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKIIE 121
>sp|Q9YB51|R18E_AERPE 50S RIBOSOMAL PROTEIN L18E >gi|7441085|pir||F72557 probable
ribosomal protein L18 APE1746 - Aeropyrum pernix
(strain K1) >gi|5105434|dbj|BAA80747.1| (AP000062) 120aa
long hypothetical 50S ribosomal protein L18 [Aeropyrum
pernix]
Length = 120
Score = 125 bits (310), Expect = 2e-28
Identities = 62/114 (54%), Positives = 81/114 (70%)
Query: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
M+ TGPT RRLI LR+ + +W +A LERPRR+RAEVN+S+INR+A+DG+
Sbjct: 1 MRPTGPTSLVTRRLIGELRRAARRNSAPVWLRVAELLERPRRRRAEVNLSKINRHARDGE 60
Query: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGS 114
M++VPG VLGAG +EKKV VAA FS A KI +G AIT+EE ++ NP+GS
Sbjct: 61 MVIVPGKVLGAGALEKKVTVAALSFSLQALVKIRLSGSRAITLEEAVRENPRGS 114
>gi|11498727 LSU ribosomal protein L18E (rpl18E) [Archaeoglobus fulgidus]
>gi|3914529|sp|O29138|R18E_ARCFU 50S RIBOSOMAL PROTEIN
L18E >gi|7441082|pir||F69390 LSU ribosomal protein L18E
(rpl18E) homolog - Archaeoglobus fulgidus
>gi|2649466|gb|AAB90121.1| (AE001026) LSU ribosomal
protein L18E (rpl18E) [Archaeoglobus fulgidus]
Length = 92
Score = 111 bits (274), Expect = 4e-24
Identities = 55/91 (60%), Positives = 68/91 (74%)
Query: 29 IWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPGSVLGAGKIEKKVIVAAWKFSET 88
+WK++A RL +PRR +AEVNVS+I +YAK + +VVPG VLG+G I K V VAA FSE
Sbjct: 1 MWKEVAERLAKPRRLQAEVNVSKIEKYAKPNEYVVVPGKVLGSGSITKPVKVAALSFSEK 60
Query: 89 ARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
A KI EAGG + IEEL+K NPKGSGV +M
Sbjct: 61 AASKIREAGGVCMKIEELLKENPKGSGVRLM 91
>emb|CAC11576.1| (AL445064) probable 50S ribosomal protein L18 [Thermoplasma
acidophilum]
Length = 120
Score = 109 bits (269), Expect = 1e-23
Identities = 58/109 (53%), Positives = 73/109 (66%)
Query: 11 LRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPGSVLG 70
L + I L S E K+W+DIA RL RR A VN+S+I++YAKDGD+IVVPG VLG
Sbjct: 11 LTQEIETLANISRESGSKLWRDIAERLASRRRGYASVNLSKIDKYAKDGDIIVVPGYVLG 70
Query: 71 AGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
GKI KKV V A+KFS+TA K+ +G + I E+ K NPKG+ V IM
Sbjct: 71 VGKISKKVTVGAYKFSKTAMEKLSNSGCAFMNISEIAKDNPKGTNVKIM 119
>pir||T43941 ribosomal protein L18.eR [similarity] - Halobacterium salinarum
>gi|6172231|dbj|BAA85899.1| (AB030282) ribosomal protein
HeL18 [Halobacterium halobium]
>gi|10580675|gb|AAG19521.1| (AE005043) 50S ribosomal
protein L18E; Rpl18e [Halobacterium sp. NRC-1]
Length = 117
Score = 107 bits (265), Expect = 4e-23
Identities = 51/113 (45%), Positives = 74/113 (65%)
Query: 7 TDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPG 66
T P L LI L+ + + +W D+A RLE+PR AEVN+SRI RYA + + ++VPG
Sbjct: 4 TSPRLSSLIAELKSVARDSGADVWHDVADRLEKPRSTHAEVNLSRIERYASEDETVIVPG 63
Query: 67 SVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
VLG+G + K V VAA FS +A KIE A GEA+ +E+ +++NP G+ V ++
Sbjct: 64 KVLGSGALRKSVTVAAVDFSSSAATKIEHADGEAVHLEQAVEQNPDGTDVRVI 116
>sp|P12733|R18E_HALMA 50S RIBOSOMAL PROTEIN L18E (HL29) (L19) >gi|71333|pir||R5HSH9
ribosomal protein L18.eR [validated] - Haloarcula
marismortui >gi|148776|gb|AAA73096.1| (M76567) ribosomal
protein [Haloarcula marismortui]
Length = 116
Score = 105 bits (259), Expect = 2e-22
Identities = 53/113 (46%), Positives = 77/113 (67%), Gaps = 1/113 (0%)
Query: 7 TDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPG 66
T+P L LI L+ + +W D+A RLE+PRR AEVN+ RI RYA++ + +VVPG
Sbjct: 4 TNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPG 63
Query: 67 SVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
VLG+G ++K V VAA FS TA KI++ GEA+++E+ I+ NP+GS V ++
Sbjct: 64 KVLGSGVLQKDVTVAAVDFSGTAETKIDQV-GEAVSLEQAIENNPEGSHVRVI 115
>pdb|1FFK|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 115
Score = 105 bits (259), Expect = 2e-22
Identities = 53/113 (46%), Positives = 77/113 (67%), Gaps = 1/113 (0%)
Query: 7 TDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPG 66
T+P L LI L+ + +W D+A RLE+PRR AEVN+ RI RYA++ + +VVPG
Sbjct: 3 TNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPG 62
Query: 67 SVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIM 119
VLG+G ++K V VAA FS TA KI++ GEA+++E+ I+ NP+GS V ++
Sbjct: 63 KVLGSGVLQKDVTVAAVDFSGTAETKIDQV-GEAVSLEQAIENNPEGSHVRVI 114
>gb|AAK40432.1| LSU ribosomal protein L18E (rpl18E) [Sulfolobus solfataricus]
Length = 119
Score = 87.0 bits (212), Expect = 7e-17
Identities = 48/122 (39%), Positives = 77/122 (62%), Gaps = 6/122 (4%)
Query: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
MK TG T+ +R+LIR L K K +W+ +A L P R+R +N+ +IN + K D
Sbjct: 1 MKVTGSTNITVRKLIRNLEKS----KKPLWRKVAEELSIPSRKRPYINLYKINEHTKPND 56
Query: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIK--RNPKGSGVII 118
++VVPG VLG GK++ +V V A FS++A KI +GG+A++I + ++ ++ KG V +
Sbjct: 57 IVVVPGKVLGIGKLDHEVTVIALDFSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRL 116
Query: 119 ME 120
M+
Sbjct: 117 MK 118
>sp|P39474|R18E_SULAC 50S RIBOSOMAL PROTEIN L18E (HL29E) >gi|629411|pir||S47024 ribosomal
protein L29 - Sulfolobus acidocaldarius
>gi|517291|emb|CAA56481.1| (X80194) ribosomal protein
H129e [Sulfolobus acidocaldarius]
Length = 118
Score = 87.0 bits (212), Expect = 7e-17
Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 5 GPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVV 64
G T+ LR+LI L+K+ IW +A LE PRR+RA +N+ +INRY+K D+IVV
Sbjct: 4 GSTNIMLRKLITSLKKQDKA----IWVRVAEELEAPRRKRAYINIYKINRYSKANDIIVV 59
Query: 65 PGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIK--RNPKGSGVIIME 120
PG VLG G ++ V V A FS+ A+ KI +GG+ +++ + I+ + KG V +M+
Sbjct: 60 PGKVLGVGNLDHPVTVVALSFSKPAKEKILRSGGKVMSLYKAIQELNDFKGKTVRLMK 117
>sp|P95990|R18E_SULSO 50S RIBOSOMAL PROTEIN L18E >gi|7441083|pir||S75418 ribosomal
protein L29 - Sulfolobus solfataricus
>gi|1707824|emb|CAA69532.1| (Y08257) ribosomal protein
L29E [Sulfolobus solfataricus]
Length = 119
Score = 87.0 bits (212), Expect = 7e-17
Identities = 48/122 (39%), Positives = 77/122 (62%), Gaps = 6/122 (4%)
Query: 1 MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGD 60
MK TG T+ +R+LIR L K K +W+ +A L P R+R +N+ +IN + K D
Sbjct: 1 MKVTGSTNITVRKLIRNLEKS----KKPLWRKVAEELSIPSRKRPYINLYKINEHTKPND 56
Query: 61 MIVVPGSVLGAGKIEKKVIVAAWKFSETARRKIEEAGGEAITIEELIK--RNPKGSGVII 118
++VVPG VLG GK++ +V V A FS++A KI +GG+A++I + ++ ++ KG V +
Sbjct: 57 IVVVPGKVLGIGKLDHEVTVIALDFSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRL 116
Query: 119 ME 120
M+
Sbjct: 117 MK 118
>gb|AAA73213.1| (M87833) ribosomal protein HL29 [Haloarcula marismortui]
Length = 72
Score = 69.9 bits (168), Expect = 1e-11
Identities = 32/69 (46%), Positives = 46/69 (66%)
Query: 7 TDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPG 66
T+P L LI L+ + +W D+A RLE+PRR AEVN+ RI RYA++ + +VVPG
Sbjct: 4 TNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPG 63
Query: 67 SVLGAGKIE 75
VLG+G ++
Sbjct: 64 KVLGSGVLQ 72
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47163376
Number of Sequences: 2977
Number of extensions: 1798291
Number of successful extensions: 4602
Number of sequences better than 1.0e-10: 15
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4585
Number of HSP's gapped (non-prelim): 15
length of query: 120
length of database: 189,106,746
effective HSP length: 54
effective length of query: 66
effective length of database: 156,788,448
effective search space: 10348037568
effective search space used: 10348037568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)