BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0365 (rpl13P) DE:LSU ribosomal protein L13P (rpl13P)
(142 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75171 lsu ribosomal protein l13p (rpl13p) PAB0365 - Pyroco... 282 9e-76
sp|O59300|RL13_PYRHO 50S RIBOSOMAL PROTEIN L13P >gi|7440820|pir|... 279 1e-74
sp|O26146|RLSX_METTH FUSED L13/S9 RIBOSOMAL PROTEIN [INCLUDES: 5... 155 3e-37
sp|P54023|RL13_METJA 50S RIBOSOMAL PROTEIN L13P >gi|2826260|gb|A... 145 2e-34
pir||C64324 ribosomal protein L13 - Methanococcus jannaschii 145 2e-34
gi|11498728 LSU ribosomal protein L13P (rpl13P) [Archaeoglobus f... 142 2e-33
sp|P95991|RL13_SULSO 50S RIBOSOMAL PROTEIN L13P >gi|7440819|pir|... 127 6e-29
gb|AAK40431.1| LSU ribosomal protein L13AB (rpl13AB) [Sulfolobus... 127 6e-29
emb|CAC11575.1| (AL445064) probable 50S ribosomal protein L13 [T... 120 1e-26
sp|P29198|RL13_HALMA 50S RIBOSOMAL PROTEIN L13P (HMAL13) >gi|991... 119 1e-26
gb|AAG19522.1| (AE005043) 50S ribosomal protein L13P; Rpl13p [Ha... 114 4e-25
sp|Q9YB50|RL13_AERPE 50S RIBOSOMAL PROTEIN L13P >gi|7440824|pir|... 104 6e-22
sp|P39473|RL13_SULAC 50S RIBOSOMAL PROTEIN L13P >gi|629412|pir||... 101 3e-21
sp|Q27389|R13A_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L13A >gi|750... 99 3e-20
gb|AAD54383.1|AF178537_1 (AF178537) ribosomal protein L13a [Aspe... 94 7e-19
pir||T48746 probable ribosomal protein l13a [imported] - Neurosp... 91 5e-18
pir||A44367 tumor-specific transplantation antigen P198 homolog ... 91 6e-18
gi|6322058 Ribosomal protein L16A (L21A) (rp22) (YL15); Rpl16ap ... 91 6e-18
gi|6324260 Ribosomal protein L16B (L21B) (rp23) (YL15); Rpl16bp ... 90 8e-18
gi|6912634 ribosomal protein L13a [Homo sapiens] >gi|730451|sp|P... 90 1e-17
sp|O43004|R16C_SCHPO 60S RIBOSOMAL PROTEIN L16-C >gi|7490013|pir... 90 1e-17
gi|7110731 ribosomal protein L13a; tissue specific transplantati... 89 2e-17
sp|P19253|R13A_MOUSE 60S RIBOSOMAL PROTEIN L13A (TRANSPLANTATION... 89 2e-17
sp|O42848|R16A_SCHPO 60S RIBOSOMAL PROTEIN L16-A >gi|7493308|pir... 89 2e-17
sp|O42991|R16B_SCHPO 60S RIBOSOMAL PROTEIN L16-B >gi|7493306|pir... 89 2e-17
pir||T43381 ribosomal protein L13/L16 - fission yeast (Schizosa... 89 2e-17
sp|O49885|R13A_LUPLU 60S RIBOSOMAL PROTEIN L13A >gi|2791948|emb|... 87 7e-17
sp|P35427|R13A_RAT 60S RIBOSOMAL PROTEIN L13A >gi|1363320|pir||A... 87 9e-17
sp|P93099|R13A_CYAPA 60S RIBOSOMAL PROTEIN L13A >gi|7440817|pir|... 87 1e-16
sp|Q95307|R13A_PIG 60S RIBOSOMAL PROTEIN L13A 87 1e-16
gi|11429826 similar to ribosomal protein L13a (H. sapiens) [Homo... 85 5e-16
sp|Q91487|R13A_SALTR 60S RIBOSOMAL PROTEIN L13A (TRANSPLANTATION... 84 6e-16
gb|AAF51987.1| (AE003602) CG1475 gene product [alt 1] [Drosophil... 84 6e-16
pir||T07697 ribosomal protein L13a, cytosolic - Arabidopsis thal... 83 1e-15
emb|CAB46827.1| (AJ388525) Ribosomal protein [Canis familiaris] 83 2e-15
dbj|BAB09429.1| (AB012242) 60S ribosomal protein L13a [Arabidops... 83 2e-15
gb|AAF20235.1|AC012395_22 (AC012395) putative 60S ribosomal prot... 82 4e-15
sp|O65055|R13A_PICMA 60S RIBOSOMAL PROTEIN L13A >gi|2982259|gb|A... 80 1e-14
emb|CAC00375.1| (AL160371) probable 60S ribosomal protein L13a [... 69 3e-11
>pir||G75171 lsu ribosomal protein l13p (rpl13p) PAB0365 - Pyrococcus abyssi
(strain Orsay) >gi|5457964|emb|CAB49454.1| (AJ248284)
LSU ribosomal protein L13P (rpl13P) [Pyrococcus abyssi]
Length = 142
Score = 282 bits (715), Expect = 9e-76
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN
Sbjct: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHV 120
PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHV
Sbjct: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHV 120
Query: 121 SRLSRPKYVTVGEVAKFLGGKF 142
SRLSRPKYVTVGEVAKFLGGKF
Sbjct: 121 SRLSRPKYVTVGEVAKFLGGKF 142
>sp|O59300|RL13_PYRHO 50S RIBOSOMAL PROTEIN L13P >gi|7440820|pir||B71043 probable
ribosomal protein L13 - Pyrococcus horikoshii
>gi|3258063|dbj|BAA30746.1| (AP000006) 142aa long
hypothetical 50S ribosomal protein L13 [Pyrococcus
horikoshii]
Length = 142
Score = 279 bits (705), Expect = 1e-74
Identities = 139/142 (97%), Positives = 142/142 (99%)
Query: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
MRIINA+GLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN
Sbjct: 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHV 120
PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAF+RLKVYVGIPKEF+DKQLETIVEAHV
Sbjct: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120
Query: 121 SRLSRPKYVTVGEVAKFLGGKF 142
SRLSRPKYVTVGEVAKFLGGKF
Sbjct: 121 SRLSRPKYVTVGEVAKFLGGKF 142
>sp|O26146|RLSX_METTH FUSED L13/S9 RIBOSOMAL PROTEIN [INCLUDES: 50S RIBOSOMAL PROTEIN
L13P; 30S RIBOSOMAL PROTEIN S9P] >gi|7482818|pir||E69150
ribosomal protein S9 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621075|gb|AAB84547.1| (AE000796) ribosomal protein
S16 (E.coli S9) [Methanobacterium thermoautotrophicum]
Length = 282
Score = 155 bits (387), Expect = 3e-37
Identities = 77/142 (54%), Positives = 107/142 (75%), Gaps = 3/142 (2%)
Query: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
+ IIN EG ILGRLAS V+K LLEGEEV+++NAEK +ITG++E + KYKQR +++N
Sbjct: 3 LMIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISN 62
Query: 61 PRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAH 119
PRR GP YP+R D+I RRT+RGMLP+K +GR+AFK LK YVGIP+EFKD+++ I +A
Sbjct: 63 PRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDAK 122
Query: 120 VSRLSRPKYVTVGEVAKFLGGK 141
+ K + +GE+++ LG +
Sbjct: 123 AGSIK--KGMELGEISELLGAR 142
>sp|P54023|RL13_METJA 50S RIBOSOMAL PROTEIN L13P >gi|2826260|gb|AAB98174.1| (U67475) LSU
ribosomal protein L13P (rplM) [Methanococcus jannaschii]
Length = 137
Score = 145 bits (363), Expect = 2e-34
Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
Query: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
M +I+AEG ILGRLAS VAK +L GEE+VIVNAE VITGN++ I Y++ + + N
Sbjct: 1 MTVIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVAN 60
Query: 61 PRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAH 119
PRR GP +P+R D+I+RRTIR MLP+K +GR+AFKR+KVYVG PK T+ E
Sbjct: 61 PRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNPKNL------TVDEKI 114
Query: 120 VSRLSRPKYVTVGEVAKFLGGKF 142
+L+ KY+T+ E++K LG KF
Sbjct: 115 SHKLNTTKYITLAELSKHLGAKF 137
>pir||C64324 ribosomal protein L13 - Methanococcus jannaschii
Length = 140
Score = 145 bits (363), Expect = 2e-34
Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
Query: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
M +I+AEG ILGRLAS VAK +L GEE+VIVNAE VITGN++ I Y++ + + N
Sbjct: 4 MTVIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVAN 63
Query: 61 PRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAH 119
PRR GP +P+R D+I+RRTIR MLP+K +GR+AFKR+KVYVG PK T+ E
Sbjct: 64 PRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNPKNL------TVDEKI 117
Query: 120 VSRLSRPKYVTVGEVAKFLGGKF 142
+L+ KY+T+ E++K LG KF
Sbjct: 118 SHKLNTTKYITLAELSKHLGAKF 140
>gi|11498728 LSU ribosomal protein L13P (rpl13P) [Archaeoglobus fulgidus]
>gi|3914669|sp|O29137|RL13_ARCFU 50S RIBOSOMAL PROTEIN
L13P >gi|7440822|pir||G69390 LSU ribosomal protein L13P
(rpl13P) homolog - Archaeoglobus fulgidus
>gi|2649459|gb|AAB90114.1| (AE001026) LSU ribosomal
protein L13P (rpl13P) [Archaeoglobus fulgidus]
Length = 156
Score = 142 bits (355), Expect = 2e-33
Identities = 64/138 (46%), Positives = 106/138 (76%), Gaps = 4/138 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+I+A G ILGRL+S++AK LL GE +V+VNAEKAVITG++ ++F +YK++ +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKYMVFERYKEKYDRGS---KE 74
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVSR 122
+GP++P+ + I +RT+RGMLPWK+ RGR A++RL+V++G+P+E + ++ E I +A + +
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDALLEK 134
Query: 123 LSR-PKYVTVGEVAKFLG 139
+S+ KYVT+ EV+++LG
Sbjct: 135 VSKTDKYVTLAEVSRYLG 152
>sp|P95991|RL13_SULSO 50S RIBOSOMAL PROTEIN L13P >gi|7440819|pir||S75419 ribosomal
protein L13 - Sulfolobus solfataricus
>gi|1707825|emb|CAA69533.1| (Y08257) ribosomal protein
L13 [Sulfolobus solfataricus]
Length = 149
Score = 127 bits (316), Expect = 6e-29
Identities = 71/138 (51%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNP- 61
IINAEG ILGR+AS V ++L EG++V+IVN EKAVI+G + + YK ++TL NP
Sbjct: 11 IINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPY 70
Query: 62 RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVS 121
R G P+ IV+RTIRGMLP K+ +GR+ K +K+YVG+PKEF+ +Q ++ VS
Sbjct: 71 RNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDSDVS 129
Query: 122 RLSRPKYVTVGEVAKFLG 139
RL + KYVTV V+K LG
Sbjct: 130 RL-KGKYVTVEVVSKELG 146
>gb|AAK40431.1| LSU ribosomal protein L13AB (rpl13AB) [Sulfolobus solfataricus]
Length = 149
Score = 127 bits (316), Expect = 6e-29
Identities = 71/138 (51%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNP- 61
IINAEG ILGR+AS V ++L EG++V+IVN EKAVI+G + + YK ++TL NP
Sbjct: 11 IINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPY 70
Query: 62 RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVS 121
R G P+ IV+RTIRGMLP K+ +GR+ K +K+YVG+PKEF+ +Q ++ VS
Sbjct: 71 RNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDSDVS 129
Query: 122 RLSRPKYVTVGEVAKFLG 139
RL + KYVTV V+K LG
Sbjct: 130 RL-KGKYVTVEVVSKELG 146
>emb|CAC11575.1| (AL445064) probable 50S ribosomal protein L13 [Thermoplasma
acidophilum]
Length = 136
Score = 120 bits (297), Expect = 1e-26
Identities = 62/140 (44%), Positives = 95/140 (67%), Gaps = 5/140 (3%)
Query: 1 MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTN 60
MR+I+A G I GRL++ VAK LLEGEE+ IVNA KAVITGN+E I K+K+R + ++
Sbjct: 1 MRVIDASGAIYGRLSAYVAKRLLEGEEITIVNASKAVITGNKEFIIEKFKERLDIGSV-- 58
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHV 120
R+GP+YPK + I+RR+I MLP K +G++A R +VY P + + +++E +
Sbjct: 59 -RKGPYYPKTPENILRRSIGDMLPKKITKGKEALARCRVYRNTPPDIEKEKVEKVDGVVT 117
Query: 121 SRLSRPKYVTVGEVAKFLGG 140
++S +T+G+++K LGG
Sbjct: 118 DKVS--GIITLGDLSKELGG 135
>sp|P29198|RL13_HALMA 50S RIBOSOMAL PROTEIN L13P (HMAL13) >gi|99178|pir||B41715 ribosomal
protein L13 [similarity] - Haloarcula marismortui
>gi|10120926|pdb|1FFK|G Chain G, Crystal Structure Of
The Large Ribosomal Subunit From Haloarcula Marismortui
At 2.4 Angstrom Resolution >gi|148777|gb|AAA73097.1|
(M76567) ribosomal protein [Haloarcula marismortui]
Length = 145
Score = 119 bits (296), Expect = 1e-26
Identities = 65/137 (47%), Positives = 91/137 (65%), Gaps = 7/137 (5%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
I++A I+GR+AS+VA+ L+GE V +VNAE+AVITG E I KY++R +
Sbjct: 11 IVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDI----GND 66
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVSR 122
G FYPKR D I +RTIRGMLP K RGR+AF+ ++VY+G P D+ E + + R
Sbjct: 67 NGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP---YDEDGEVLDGTSLDR 123
Query: 123 LSRPKYVTVGEVAKFLG 139
LS K+VT+GE+++ LG
Sbjct: 124 LSNIKFVTLGEISETLG 140
>gb|AAG19522.1| (AE005043) 50S ribosomal protein L13P; Rpl13p [Halobacterium sp.
NRC-1]
Length = 145
Score = 114 bits (283), Expect = 4e-25
Identities = 61/137 (44%), Positives = 89/137 (64%), Gaps = 7/137 (5%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++A I+GR+AS VA+ L G+ V +VNAE+AVITG + +FS Y+ R L +
Sbjct: 11 VVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITGTEDDVFSTYRTRANLGS----D 66
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVSR 122
RGP+YPKR D I +R IRGMLP+K D GR+A ++VYVG P D+ + + + R
Sbjct: 67 RGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVGNP---MDEDGDVLDGTSLDR 123
Query: 123 LSRPKYVTVGEVAKFLG 139
LS ++VT+ EV++ LG
Sbjct: 124 LSTIRFVTLSEVSEELG 140
>sp|Q9YB50|RL13_AERPE 50S RIBOSOMAL PROTEIN L13P >gi|7440824|pir||G72557 probable
ribosomal protein L13 APE1747 - Aeropyrum pernix
(strain K1) >gi|5105435|dbj|BAA80748.1| (AP000062) 155aa
long hypothetical 50S ribosomal protein L13 [Aeropyrum
pernix]
Length = 155
Score = 104 bits (256), Expect = 6e-22
Identities = 56/140 (40%), Positives = 86/140 (61%), Gaps = 2/140 (1%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRT-GLRTLTNP 61
+++ G+I+GRLAS VAK+LL G V +VNAEK V++G+ ++ Y+ G+++ +
Sbjct: 12 VVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSH 71
Query: 62 RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVS 121
+ P P+ + + +RGMLP RGR+A RL+VYVG+P E K ++ EA S
Sbjct: 72 KWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFPEADAS 131
Query: 122 RLSRPKYVTVGEVAKFLGGK 141
RLS Y+ +G VA+ LG K
Sbjct: 132 RLS-SHYIELGAVARQLGWK 150
>sp|P39473|RL13_SULAC 50S RIBOSOMAL PROTEIN L13P >gi|629412|pir||S47025 ribosomal protein
L13 - Sulfolobus acidocaldarius
>gi|517292|emb|CAA56482.1| (X80194) ribosomal protein
L13 [Sulfolobus acidocaldarius]
Length = 145
Score = 101 bits (250), Expect = 3e-21
Identities = 57/139 (41%), Positives = 90/139 (64%), Gaps = 6/139 (4%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNP- 61
I++A ILGR+++ +AK+L G++V +VNAEKA+I+G R + Y ++T+ NP
Sbjct: 9 IVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPY 68
Query: 62 RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVS 121
R+G P+ IV+RT+RGMLP K G++ ++ LK Y+GI + K + +A VS
Sbjct: 69 RQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGI---LEGKSMIRFDDADVS 124
Query: 122 RLSRPKYVTVGEVAKFLGG 140
RL + KY+TV E+++ LGG
Sbjct: 125 RL-KGKYITVAELSRLLGG 142
>sp|Q27389|R13A_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L13A >gi|7505890|pir||T23654
hypothetical protein M01F1.2 - Caenorhabditis elegans
>gi|963095|gb|AAA74904.1| (U31528) 60S ribosomal protein
L13A [Caenorhabditis elegans]
>gi|3878569|emb|CAA86515.1| (Z46381) contains similarity
to Pfam domain: PF00572 (Ribosomal protein L13),
Score=149.0, E-value=2.6e-41, N=1~cDNA EST EMBL:M79788
comes from this gene; cDNA EST yk84g5.3 comes from this
gene; cDNA EST yk85e7.3 comes from this gene~cDNA EST
yk103h9.3>
Length = 202
Score = 98.7 bits (242), Expect = 3e-20
Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
II+ + +LGRLAS VAK LL+G++VV++ AE+ VI+GN KY R NP
Sbjct: 9 IIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPA 68
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEF-KDKQLETIVEAHVS 121
RG F+ + +I RT+RGMLP KT+RG +A K L+ Y G+P ++ K K L +
Sbjct: 69 RGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASRFR 128
Query: 122 RLSRPKYVTVGEVAKFLGGKF 142
R K+ VG ++ +G +F
Sbjct: 129 LQPRRKFCVVGRLSHEVGWQF 149
>gb|AAD54383.1|AF178537_1 (AF178537) ribosomal protein L13a [Aspergillus nidulans]
Length = 202
Score = 94.0 bits (230), Expect = 7e-19
Identities = 61/146 (41%), Positives = 88/146 (59%), Gaps = 9/146 (6%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+ +G +LGRLAS VAK LL G+++V+V E I+G E +K K LR +T N
Sbjct: 9 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKITRYN 66
Query: 61 PRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA- 118
P RG PF+ + I + +RGM+P KT RG A +RLKV+ G+P + K+ + +A
Sbjct: 67 PTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKRVVVPQAL 126
Query: 119 HVSRLSRP--KYVTVGEVAKFLGGKF 142
V RL RP KY TVG ++ +G K+
Sbjct: 127 RVLRL-RPGRKYCTVGRLSHEVGWKY 151
>pir||T48746 probable ribosomal protein l13a [imported] - Neurospora crassa
>gi|7635796|emb|CAB88562.1| (AL353819) probable
ribosomal protein l13a [Neurospora crassa]
Length = 202
Score = 91.3 bits (223), Expect = 5e-18
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 7/145 (4%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+ +G +LGRLAS VAK LL G+++V+V E I+G E +K K + LR +T N
Sbjct: 9 VIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHSYLRKMTRYN 66
Query: 61 PRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA- 118
P RG PF+ + I + +RGM+P KT RG A +RLKV+ G+P + K+ + +A
Sbjct: 67 PTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQAL 126
Query: 119 HVSRLS-RPKYVTVGEVAKFLGGKF 142
V RL K+ TVG ++ +G K+
Sbjct: 127 RVLRLQPGRKFCTVGRLSSEVGWKY 151
>pir||A44367 tumor-specific transplantation antigen P198 homolog p23 - bovine
(fragment)
Length = 202
Score = 90.9 bits (222), Expect = 6e-18
Identities = 59/143 (41%), Positives = 83/143 (57%), Gaps = 4/143 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 7 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 66
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HV 120
RGP++ + I RT+RGMLP KT RG+ A +RLKV+ GIP + DK+ +V A V
Sbjct: 67 RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPY-DKKKRMVVPAALKV 125
Query: 121 SRLS-RPKYVTVGEVAKFLGGKF 142
RL K+ +G +A +G K+
Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>gi|6322058 Ribosomal protein L16A (L21A) (rp22) (YL15); Rpl16ap [Saccharomyces
cerevisiae] >gi|730452|sp|P26784|R16A_YEAST 60S
RIBOSOMAL PROTEIN L16-A (L13A) (RP22)
>gi|626321|pir||S48401 ribosomal protein L16.e.A,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|557790|emb|CAA86145.1| (Z38059) orf, len: 199, CAI:
0.62, predicted to be spliced, similar to A44367 A44367
P23=TUMOR-SPECIFIC TRANSPLANTATION ANTIGEN and ribosomal
proteins [Saccharomyces cerevisiae]
Length = 199
Score = 90.9 bits (222), Expect = 6e-18
Identities = 57/144 (39%), Positives = 87/144 (59%), Gaps = 6/144 (4%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+ +G ++GRLAS VAK LL G+++V+V AE+ I+G E +K K LR T N
Sbjct: 8 VIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISG--EFFRNKLKYHDFLRKATAFN 65
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-H 119
RGPF+ + I + +RGM+ KT RG+ A +RLKV+ GIP + K+ + +A
Sbjct: 66 KTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALR 125
Query: 120 VSRLS-RPKYVTVGEVAKFLGGKF 142
V RL KY T+G+++ +G K+
Sbjct: 126 VLRLKPGRKYTTLGKLSTSVGWKY 149
>gi|6324260 Ribosomal protein L16B (L21B) (rp23) (YL15); Rpl16bp [Saccharomyces
cerevisiae] >gi|1710642|sp|P26785|R16B_YEAST 60S
RIBOSOMAL PROTEIN L16-B (YL15) (RP23)
>gi|1077206|pir||S53911 ribosomal protein L16.e.B,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|791117|emb|CAA60191.1| (X86470) unknown
[Saccharomyces cerevisiae] >gi|1301951|emb|CAA95943.1|
(Z71345) ORF YNL069c [Saccharomyces cerevisiae]
Length = 198
Score = 90.5 bits (221), Expect = 8e-18
Identities = 56/144 (38%), Positives = 87/144 (59%), Gaps = 6/144 (4%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+A+ +LGRLAS +AK +L G+++V+V AE I+G E +K K LR T N
Sbjct: 7 VIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISG--EFFRNKLKYHDFLRKATAFN 64
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-H 119
RGPF+ + I+ + IRGM+ KT RG+ A +RLK++ GIP + K+ + +A
Sbjct: 65 KTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALR 124
Query: 120 VSRLS-RPKYVTVGEVAKFLGGKF 142
V RL KY T+G+++ +G K+
Sbjct: 125 VLRLKPGRKYTTLGKLSTSVGWKY 148
>gi|6912634 ribosomal protein L13a [Homo sapiens]
>gi|730451|sp|P40429|R13A_HUMAN 60S RIBOSOMAL PROTEIN
L13A (23 KDA HIGHLY BASIC PROTEIN)
>gi|345897|pir||S29539 ribosomal protein L13a, cytosolic
- human >gi|23691|emb|CAA40254.1| (X56932) 23 kD highly
basic protein [Homo sapiens] >gi|6552365|dbj|BAA88214.1|
(AB028893) ribosomal protein L13a [Homo sapiens]
Length = 203
Score = 90.1 bits (220), Expect = 1e-17
Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 4/143 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 8 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 67
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HV 120
RGP++ + I RT+RGMLP KT RG+ A RLKV+ GIP + DK+ +V A V
Sbjct: 68 RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY-DKKKRMVVPAALKV 126
Query: 121 SRLS-RPKYVTVGEVAKFLGGKF 142
RL K+ +G +A +G K+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|O43004|R16C_SCHPO 60S RIBOSOMAL PROTEIN L16-C >gi|7490013|pir||T40144 60s ribosomal
protein l16-c - fission yeast (Schizosaccharomyces
pombe) >gi|2956772|emb|CAA17885.1| (AL022103) 60s
ribosomal protein l16-c. [Schizosaccharomyces pombe]
Length = 197
Score = 89.7 bits (219), Expect = 1e-17
Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
II+A+G ++GRLAS VAK LL G++VV+V E+ I+G+ +K K LR N
Sbjct: 9 IIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGH--FFRNKLKYLAYLRKACRYN 66
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-- 118
P RG F+ + I + +RGMLP KT RG A K L+ GIP F DKQ +V A
Sbjct: 67 PSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPF-DKQKRLVVPAAL 125
Query: 119 HVSRLS-RPKYVTVGEVAKFLGGKF 142
V RL KY T+G ++ +G K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKY 150
>gi|7110731 ribosomal protein L13a; tissue specific transplantation antigen
P198-7 [Mus musculus] >gi|111208|pir||JL0149
transplantation antigen P198 - mouse
>gi|55050|emb|CAA35908.1| (X51528) tum- transplantation
antigen P198 [Mus musculus]
Length = 203
Score = 89.3 bits (218), Expect = 2e-17
Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 4/143 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 8 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 67
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HV 120
RGP++ + I RT+RGMLP KT RG+ A +RLKV GIP + DK+ +V A V
Sbjct: 68 RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPY-DKKKRMVVPAALKV 126
Query: 121 SRLS-RPKYVTVGEVAKFLGGKF 142
RL K+ +G +A +G K+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|P19253|R13A_MOUSE 60S RIBOSOMAL PROTEIN L13A (TRANSPLANTATION ANTIGEN P198) (TUM-P198
ANTIGEN)
Length = 203
Score = 89.3 bits (218), Expect = 2e-17
Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 4/143 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 8 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 67
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HV 120
RGP++ + I RT+RGMLP KT RG+ A +RLKV GIP + DK+ +V A V
Sbjct: 68 RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPY-DKKKRMVVPAALKV 126
Query: 121 SRLS-RPKYVTVGEVAKFLGGKF 142
RL K+ +G +A +G K+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|O42848|R16A_SCHPO 60S RIBOSOMAL PROTEIN L16-A >gi|7493308|pir||T38231 ribosomal
protein L16-A - fission yeast (Schizosaccharomyces
pombe) >gi|2879799|emb|CAA16985.1| (AL021813) 60s
ribosomal protein L16-B [Schizosaccharomyces pombe]
Length = 197
Score = 89.3 bits (218), Expect = 2e-17
Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+A+G +LGRLAS VAK LL G++VV+V E+ I+G+ +K K LR N
Sbjct: 9 VIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGH--FFRNKLKYLAYLRKACRYN 66
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-- 118
P RG F+ + I ++ +RGMLP KT RG+ A + L+ GIP F DKQ +V A
Sbjct: 67 PSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPF-DKQKRVVVPAAL 125
Query: 119 HVSRLS-RPKYVTVGEVAKFLGGKF 142
V RL KY TVG ++ +G K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKY 150
>sp|O42991|R16B_SCHPO 60S RIBOSOMAL PROTEIN L16-B >gi|7493306|pir||T40720 ribosomal
protein L13/L16 - fission yeast (Schizosaccharomyces
pombe) >gi|2879875|emb|CAA17016.1| (AL021816) ribosomal
protein L13 [Schizosaccharomyces pombe]
>gi|5441476|emb|CAB46706.1| (AL096796) 60s ribosomal
protein L13/L16 [Schizosaccharomyces pombe]
Length = 197
Score = 89.3 bits (218), Expect = 2e-17
Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+A+G +LGRLAS VAK LL G++VV+V E+ I+G+ +K K LR N
Sbjct: 9 VIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGH--FFRNKLKYLAYLRKACRYN 66
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-- 118
P RG F+ + I ++ +RGMLP KT RG+ A + L+ GIP F DKQ +V A
Sbjct: 67 PSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPF-DKQKRVVVPAAL 125
Query: 119 HVSRLS-RPKYVTVGEVAKFLGGKF 142
V RL KY TVG ++ +G K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKY 150
>pir||T43381 ribosomal protein L13/L16 - fission yeast (Schizosaccharomyces
pombe) (fragment) >gi|3299816|dbj|BAA31555.1| (AB016008)
ribosomal protein rp22 homolog [Schizosaccharomyces
pombe]
Length = 193
Score = 89.3 bits (218), Expect = 2e-17
Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--N 60
+I+A+G +LGRLAS VAK LL G++VV+V E+ I+G+ +K K LR N
Sbjct: 5 VIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGH--FFRNKLKYLAYLRKACRYN 62
Query: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-- 118
P RG F+ + I ++ +RGMLP KT RG+ A + L+ GIP F DKQ +V A
Sbjct: 63 PSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPF-DKQKRVVVPAAL 121
Query: 119 HVSRLS-RPKYVTVGEVAKFLGGKF 142
V RL KY TVG ++ +G K+
Sbjct: 122 RVLRLKPGRKYCTVGRLSSEVGWKY 146
>sp|O49885|R13A_LUPLU 60S RIBOSOMAL PROTEIN L13A >gi|2791948|emb|CAA11283.1| (AJ223363)
ribosomal protein L13a [Lupinus luteus]
Length = 205
Score = 87.4 bits (213), Expect = 7e-17
Identities = 59/142 (41%), Positives = 81/142 (56%), Gaps = 3/142 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++A +LGRLAS VAK LL G++VVIV +E+ I+G KY + R T P
Sbjct: 13 VVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPS 72
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEF-KDKQLETIVEAHVS 121
GP + S +I RT+RGM+P KT RG A RLKVY GIP F K K+L V
Sbjct: 73 HGPIHCAPS-KIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVL 131
Query: 122 RLSR-PKYVTVGEVAKFLGGKF 142
RL + KY +G+++ +G +
Sbjct: 132 RLQKGHKYCLLGQLSSEVGWNY 153
>sp|P35427|R13A_RAT 60S RIBOSOMAL PROTEIN L13A >gi|1363320|pir||A53204 ribosomal
protein L13a, cytosolic [validated] - rat
>gi|460776|emb|CAA48343.1| (X68282) rat ribosomal
protein L13a [Rattus norvegicus]
Length = 203
Score = 87.0 bits (212), Expect = 9e-17
Identities = 58/143 (40%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 8 VLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 67
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HV 120
RGP++ + I RT+RGMLP KT RG+ A +RLKV GIP + DK+ +V A V
Sbjct: 68 RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPY-DKKKRMVVPAALKV 126
Query: 121 SRLS-RPKYVTVGEVAKFLGGKF 142
RL K+ +G +A +G K+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|P93099|R13A_CYAPA 60S RIBOSOMAL PROTEIN L13A >gi|7440817|pir||T07166 ribosomal
protein L13a - Cyanophora paradoxa
>gi|1743007|emb|CAA71090.1| (Y09971) ribosomal protein
L13a [Cyanophora paradoxa]
Length = 200
Score = 86.6 bits (211), Expect = 1e-16
Identities = 54/139 (38%), Positives = 79/139 (55%), Gaps = 2/139 (1%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ +AK LL G+ VV V E+ I+G+ K+ R TNPR
Sbjct: 7 VVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPR 66
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121
RGPF+ + I+ RTIRGM+P KT RG A +RLK + G+P + + I +A V
Sbjct: 67 RGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVL 126
Query: 122 RLS-RPKYVTVGEVAKFLG 139
RL K+ +G +A +G
Sbjct: 127 RLKPGRKFCVLGRLATEVG 145
>sp|Q95307|R13A_PIG 60S RIBOSOMAL PROTEIN L13A
Length = 137
Score = 86.6 bits (211), Expect = 1e-16
Identities = 51/116 (43%), Positives = 69/116 (58%), Gaps = 1/116 (0%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 4 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 63
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA 118
RGP++ + I RT+RGMLP KT RG+ A RLKV+ GIP + DK+ +V A
Sbjct: 64 RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY-DKKKRMVVPA 118
>gi|11429826 similar to ribosomal protein L13a (H. sapiens) [Homo sapiens]
Length = 203
Score = 84.7 bits (206), Expect = 5e-16
Identities = 57/143 (39%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN KY R TNP
Sbjct: 8 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS 67
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HV 120
R P++ + I RT+RGMLP KT RG+ A LKV+ GIP + DK+ +V A V
Sbjct: 68 RVPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDHLKVFDGIPPPY-DKKKRMVVPAALKV 126
Query: 121 SRLS-RPKYVTVGEVAKFLGGKF 142
RL K+ +G +A +G K+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|Q91487|R13A_SALTR 60S RIBOSOMAL PROTEIN L13A (TRANSPLANTATION ANTIGEN P198 HOMOLOG)
>gi|604496|gb|AAA57517.1| (U18488) transplantation
antigen [Salmo trutta]
Length = 189
Score = 84.3 bits (205), Expect = 6e-16
Identities = 55/136 (40%), Positives = 78/136 (56%), Gaps = 4/136 (2%)
Query: 10 ILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPK 69
+LGRLA+ VA +L G +VV+V E I+GN KY R TNP RGP++ +
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 70 RSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA--HVSRLS-RP 126
I RT+RGMLP KT RG+ A +RLKV+ G+P + DK+ +V A + RL
Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPY-DKRKRMVVPAALKIVRLKPTR 119
Query: 127 KYVTVGEVAKFLGGKF 142
K+ +G +A +G K+
Sbjct: 120 KFALLGRLAHEVGWKY 135
>gb|AAF51987.1| (AE003602) CG1475 gene product [alt 1] [Drosophila melanogaster]
Length = 205
Score = 84.3 bits (205), Expect = 6e-16
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGN---REVIFSKYKQRTGLRTLT 59
+I+ G +LGRLAS VAK LL+G +V +V E+ ++G+ ++ F Y ++ R
Sbjct: 10 VIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRK---RCNV 66
Query: 60 NPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAH 119
NP RGPF+ + I + +RGM+P KT RG+ A RL+V+ GIP + DK+ +V
Sbjct: 67 NPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPY-DKRRRVVVPIA 125
Query: 120 VSRL---SRPKYVTVGEVAKFLG 139
+ L S KY VG ++ +G
Sbjct: 126 MRVLTLRSDRKYCQVGRLSHEVG 148
>pir||T07697 ribosomal protein L13a, cytosolic - Arabidopsis thaliana
>gi|4753651|emb|CAB41927.1| (AL049751) ribosomal protein
L13a like protein [Arabidopsis thaliana]
>gi|7268019|emb|CAB78359.1| (AL161535) ribosomal protein
L13a like protein [Arabidopsis thaliana]
Length = 206
Score = 83.5 bits (203), Expect = 1e-15
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ +LGRLAS AK LL G+EVV+V E+ ++G KY + R T P
Sbjct: 13 VVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121
GP + + +I RT+RGM+P KT RG A RLKV+ GIP + + I +A V
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVL 132
Query: 122 RL-SRPKYVTVGEVAKFLG 139
RL S KY +G ++ +G
Sbjct: 133 RLQSGHKYCLLGRLSSEVG 151
>emb|CAB46827.1| (AJ388525) Ribosomal protein [Canis familiaris]
Length = 142
Score = 82.7 bits (201), Expect = 2e-15
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++ G +LGRLA+ VAK +L G +VV+V E I+GN Y R TNP
Sbjct: 7 VLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPS 66
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA 118
RGP+ + I RT+RGMLP KT RG+ A RLKV+ GIP + DK+ +V A
Sbjct: 67 RGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY-DKKKRMVVPA 121
>dbj|BAB09429.1| (AB012242) 60S ribosomal protein L13a [Arabidopsis thaliana]
Length = 206
Score = 82.7 bits (201), Expect = 2e-15
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++A +LGRLAS AK LL G++VVIV E+ ++G KY + R T P
Sbjct: 13 VVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121
GP + + +I RT+RGM+P KT RG A RLKVY G+P + + I +A V
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVL 132
Query: 122 RL-SRPKYVTVGEVAKFLG 139
RL + KY +G ++ +G
Sbjct: 133 RLQAGHKYCLLGRLSSEVG 151
>gb|AAF20235.1|AC012395_22 (AC012395) putative 60S ribosomal protein L13A [Arabidopsis
thaliana]
Length = 206
Score = 81.5 bits (198), Expect = 4e-15
Identities = 51/139 (36%), Positives = 77/139 (54%), Gaps = 2/139 (1%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++A +LGRLAS VAK LL G+ +V+V E+ ++G KY + R T P
Sbjct: 13 VVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEF-KDKQLETIVEAHVS 121
GP + + +I RT+RGM+P KT RG A RLKV+ G+P + K K++ V
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVL 132
Query: 122 RL-SRPKYVTVGEVAKFLG 139
RL + KY +G ++ +G
Sbjct: 133 RLQAGHKYCLLGRLSSEVG 151
>sp|O65055|R13A_PICMA 60S RIBOSOMAL PROTEIN L13A >gi|2982259|gb|AAC32117.1| (AF051212)
probable 60s ribosomal protein L13a [Picea mariana]
Length = 206
Score = 80.0 bits (194), Expect = 1e-14
Identities = 51/139 (36%), Positives = 76/139 (53%), Gaps = 2/139 (1%)
Query: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
+++A +LGRLAS +AK LL G+ VV+V E+ ++G KY + R T P
Sbjct: 13 VVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 72
Query: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121
GP + + I+ RTIRGM+P KT RG A L+ + G+P + K+ I +A V
Sbjct: 73 HGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVL 132
Query: 122 RLS-RPKYVTVGEVAKFLG 139
RL KY +G ++K +G
Sbjct: 133 RLQPGHKYCLLGRLSKEVG 151
>emb|CAC00375.1| (AL160371) probable 60S ribosomal protein L13a [Leishmania major]
Length = 145
Score = 68.7 bits (165), Expect = 3e-11
Identities = 42/124 (33%), Positives = 58/124 (45%), Gaps = 3/124 (2%)
Query: 22 LLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRG 81
LL G ++ V E+ I G KY Q R LTNP +GPF+ + ++ RT+R
Sbjct: 2 LLLGXKITXVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNPTKGPFHHRAPSDVFVRTVRS 61
Query: 82 MLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIV---EAHVSRLSRPKYVTVGEVAKFL 138
MLP T RG KA L Y GIP ++ + HV S Y +G + K +
Sbjct: 62 MLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLGNMCKHV 121
Query: 139 GGKF 142
G K+
Sbjct: 122 GWKY 125
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47058799
Number of Sequences: 2977
Number of extensions: 1740319
Number of successful extensions: 3587
Number of sequences better than 1.0e-10: 39
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3533
Number of HSP's gapped (non-prelim): 39
length of query: 142
length of database: 189,106,746
effective HSP length: 54
effective length of query: 88
effective length of database: 156,788,448
effective search space: 13797383424
effective search space used: 13797383424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)