BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0366 (rps9P) DE:SSU ribosomal protein S9P (rps9P)
(135 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75171 ssu ribosomal protein s9p (rps9p) PAB0366 - Pyrococc... 272 1e-72
sp|O59299|RS9_PYRHO 30S RIBOSOMAL PROTEIN S9P >gi|7440267|pir||A... 270 6e-72
sp|P54024|RS9_METJA 30S RIBOSOMAL PROTEIN S9P >gi|2129275|pir||D... 188 3e-47
sp|O26146|RLSX_METTH FUSED L13/S9 RIBOSOMAL PROTEIN [INCLUDES: 5... 179 1e-44
gi|11498729 SSU ribosomal protein S9P (rps9P) [Archaeoglobus ful... 153 7e-37
sp|P05763|RS9_HALMA 30S RIBOSOMAL PROTEIN S9P (HMAS9) (HS3) (F1)... 145 3e-34
prf||1011219A protein HS3 [Haloarcula marismortui] 138 2e-32
sp|Q9YB48|RS9_AERPE 30S RIBOSOMAL PROTEIN S9P >gi|7440282|pir||A... 138 3e-32
gb|AAK40430.1| SSU ribosomal protein S9AB (rps9AB) [Sulfolobus s... 127 7e-29
sp|P95992|RS9_SULSO 30S RIBOSOMAL PROTEIN S9P >gi|7440286|pir||S... 127 7e-29
emb|CAC11574.1| (AL445064) probable 30S ribosomal protein S9 [Th... 126 9e-29
gi|6320120 Ribosomal protein S16B (rp61R); Rps16bp [Saccharomyce... 119 1e-26
sp|O94017|RS16_CANAL 40S RIBOSOMAL PROTEIN S16 >gi|3859690|emb|C... 118 3e-26
sp|P39468|RS9_SULAC 30S RIBOSOMAL PROTEIN S9P >gi|629416|pir||S4... 116 1e-25
pir||S69289 ribosomal protein S16.e.A - yeast (Saccharomyces cer... 116 1e-25
sp|P46293|RS16_GOSHI 40S RIBOSOMAL PROTEIN S16 >gi|541835|pir||S... 115 3e-25
gb|AAF46862.1| (AE003458) CG4046 gene product [Drosophila melano... 115 3e-25
gb|AAF34799.1|AF227979_1 (AF227979) 40S ribosomal protein S16 [E... 114 4e-25
sp|Q22054|RS16_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S16 >gi|7506... 111 3e-24
sp|O60144|RS16_SCHPO 40S RIBOSOMAL PROTEIN S16 >gi|7489976|pir||... 111 3e-24
gi|4506691 ribosomal protein S16 [Homo sapiens] >gi|11426147|ref... 110 8e-24
pir||T43419 ribosomal protein S16 - fission yeast (Schizosacchar... 109 1e-23
gb|AAD22696.1|AC006586_5 (AC006586) 40S ribosomal protein S16 [A... 109 1e-23
sp|Q42340|RS16_ARATH 40S RIBOSOMAL PROTEIN S16 109 1e-23
sp|O22647|RS16_FRIAG 40S RIBOSOMAL PROTEIN S16 >gi|2641209|gb|AA... 109 1e-23
sp|P46294|RS16_ORYSA 40S RIBOSOMAL PROTEIN S16 >gi|7440266|pir||... 108 3e-23
gi|7305445 ribosomal protein S16 [Mus musculus] >gi|133810|sp|P1... 105 3e-22
gb|AAD23965.1|AF108725_1 (AF108725) ribosomal protein S16 [Tortu... 104 3e-22
gb|AAF26790.1|AC016829_14 (AC016829) putative 40S ribosomal prot... 103 7e-22
pir||R3MS16 ribosomal protein S16 - mouse 102 2e-21
sp|P16149|RS16_LUPPO 40S RIBOSOMAL PROTEIN S16 >gi|70921|pir||R3... 101 5e-21
sp|Q29201|RS16_PIG 40S RIBOSOMAL PROTEIN S16 99 2e-20
gb|AAG19523.1| (AE005043) 30S ribosomal protein S9P; Rps9p [Halo... 89 2e-17
pir||H81705 ribosomal protein S9 TC0402 [imported] - Chlamydia m... 76 1e-13
sp|O84128|RS9_CHLTR 30S RIBOSOMAL PROTEIN S9 >gi|7440276|pir||B7... 76 2e-13
sp|Q9X1G4|RS9_THEMA 30S RIBOSOMAL PROTEIN S9 >gi|7440280|pir||F7... 74 6e-13
>pir||H75171 ssu ribosomal protein s9p (rps9p) PAB0366 - Pyrococcus abyssi
(strain Orsay) >gi|5457965|emb|CAB49455.1| (AJ248284)
SSU ribosomal protein S9P (rps9P) [Pyrococcus abyssi]
Length = 135
Score = 272 bits (688), Expect = 1e-72
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV
Sbjct: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN 120
DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN
Sbjct: 61 DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN 120
Query: 121 RSTKGPRAKRQKSYR 135
RSTKGPRAKRQKSYR
Sbjct: 121 RSTKGPRAKRQKSYR 135
>sp|O59299|RS9_PYRHO 30S RIBOSOMAL PROTEIN S9P >gi|7440267|pir||A71043 probable
ribosomal protein S9 - Pyrococcus horikoshii
>gi|3258062|dbj|BAA30745.1| (AP000006) 135aa long
hypothetical 30S ribosomal protein S9 [Pyrococcus
horikoshii]
Length = 135
Score = 270 bits (682), Expect = 6e-72
Identities = 132/135 (97%), Positives = 135/135 (99%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
MRIIQTTGKRKTAIARAVIREG+GRVRINGKPVE++EPEIARFTILEPLILAGEEIWNSV
Sbjct: 1 MRIIQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSV 60
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN 120
DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN
Sbjct: 61 DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN 120
Query: 121 RSTKGPRAKRQKSYR 135
RSTKGPRAKRQKSYR
Sbjct: 121 RSTKGPRAKRQKSYR 135
>sp|P54024|RS9_METJA 30S RIBOSOMAL PROTEIN S9P >gi|2129275|pir||D64324 ribosomal protein
S9 - Methanococcus jannaschii >gi|1590940|gb|AAB98175.1|
(U67475) SSU ribosomal protein S9P (rpsI) [Methanococcus
jannaschii]
Length = 136
Score = 188 bits (472), Expect = 3e-47
Identities = 88/134 (65%), Positives = 111/134 (82%)
Query: 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVD 61
+I+ T GKRK AIARAV REGKGR+RIN P+EL+EP+ R ++EP++LAGEE+ + +D
Sbjct: 3 KIVITVGKRKRAIARAVAREGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMD 62
Query: 62 IDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNR 121
IDV V+GGG MGQ +AAR AI +A+VE+TG L++KF+ YDRT+LV D RRTEPHKP+R
Sbjct: 63 IDVTVKGGGVMGQMDAARTAIGKAIVEFTGSKELRDKFLAYDRTLLVSDARRTEPHKPSR 122
Query: 122 STKGPRAKRQKSYR 135
STKGPRAKRQKSYR
Sbjct: 123 STKGPRAKRQKSYR 136
>sp|O26146|RLSX_METTH FUSED L13/S9 RIBOSOMAL PROTEIN [INCLUDES: 50S RIBOSOMAL PROTEIN
L13P; 30S RIBOSOMAL PROTEIN S9P] >gi|7482818|pir||E69150
ribosomal protein S9 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621075|gb|AAB84547.1| (AE000796) ribosomal protein
S16 (E.coli S9) [Methanobacterium thermoautotrophicum]
Length = 282
Score = 179 bits (450), Expect = 1e-44
Identities = 92/134 (68%), Positives = 109/134 (80%), Gaps = 3/134 (2%)
Query: 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVD 61
++I T+GKRKTAIAR IREGKGRVRIN PVEL PE+AR I+EPL LAG+ I N VD
Sbjct: 152 KVIHTSGKRKTAIARGTIREGKGRVRINKVPVELYTPELARLKIMEPLKLAGDVI-NDVD 210
Query: 62 IDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNR 121
I+V+V GGG +GQAEAAR+ IAR LV+WT DM+LKEKF++YDRTMLVGDPRR+EP K
Sbjct: 211 INVRVVGGGIVGQAEAARMVIARGLVDWTSDMDLKEKFVQYDRTMLVGDPRRSEPKK--Y 268
Query: 122 STKGPRAKRQKSYR 135
+G RA+RQKSYR
Sbjct: 269 GGRGARARRQKSYR 282
>gi|11498729 SSU ribosomal protein S9P (rps9P) [Archaeoglobus fulgidus]
>gi|3914921|sp|O29136|RS9_ARCFU 30S RIBOSOMAL PROTEIN
S9P >gi|7440268|pir||H69390 SSU ribosomal protein S9P
(rps9P) homolog - Archaeoglobus fulgidus
>gi|2649458|gb|AAB90113.1| (AE001026) SSU ribosomal
protein S9P (rps9P) [Archaeoglobus fulgidus]
Length = 135
Score = 153 bits (383), Expect = 7e-37
Identities = 81/135 (60%), Positives = 104/135 (77%), Gaps = 3/135 (2%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
M+I+ T+GKRKTA ARAVI+ GKGRVRIN PVE+ +PE+AR I+EPLI+A +E+ V
Sbjct: 4 MKIVVTSGKRKTATARAVIKPGKGRVRINSVPVEIHQPELARMKIMEPLIIA-KELAEKV 62
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPN 120
DI+VK GGGFM QAEAAR AIARAL+E++GD L++ F++YDRT+LV D RR P
Sbjct: 63 DIEVKTWGGGFMAQAEAARTAIARALLEFSGDEELRKAFLEYDRTLLVNDVRRKLP--KI 120
Query: 121 RSTKGPRAKRQKSYR 135
+ +G RA+RQ SYR
Sbjct: 121 QGGRGARARRQTSYR 135
>sp|P05763|RS9_HALMA 30S RIBOSOMAL PROTEIN S9P (HMAS9) (HS3) (F1) >gi|99181|pir||C41715
ribosomal protein S9 - Haloarcula marismortui
>gi|11383496|pir||R3HS3 ribosomal protein S9 [validated]
- Haloarcula marismortui >gi|148778|gb|AAA73098.1|
(M76567) ribosomal protein [Haloarcula marismortui]
Length = 132
Score = 145 bits (361), Expect = 3e-34
Identities = 70/133 (52%), Positives = 101/133 (75%), Gaps = 2/133 (1%)
Query: 3 IIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDI 62
+ T+GK+KTA+ARA +REG+GRVRI+ +PVELV+PE+A+ +LEP +A +++ VD+
Sbjct: 2 VTNTSGKKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDV 61
Query: 63 DVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRS 122
+V V+GGG MGQA+AAR AIAR LV+ T D L++ F+++DR++LV D R++EP K
Sbjct: 62 EVSVEGGGVMGQADAARTAIARGLVDHTNDAELRDAFMEFDRSLLVNDVRQSEPKK--WG 119
Query: 123 TKGPRAKRQKSYR 135
G RA+ QKSYR
Sbjct: 120 GPGARARYQKSYR 132
>prf||1011219A protein HS3 [Haloarcula marismortui]
Length = 130
Score = 138 bits (345), Expect = 2e-32
Identities = 69/133 (51%), Positives = 100/133 (74%), Gaps = 3/133 (2%)
Query: 3 IIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDI 62
+ T+GK+KTA+ARA +REG+GRVRI+ +PVELV+PE+A+ +LEP +A +++ VD+
Sbjct: 1 VTNTSGKKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDV 60
Query: 63 DVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRS 122
+V V+GGG MGQA+ AR AIAR LV+ T D L++ F+++DR++LV D R++EP K
Sbjct: 61 EVSVEGGGVMGQAD-ARTAIARGLVDHTNDAQLRDAFMEFDRSLLVNDVRQSEPKK--WG 117
Query: 123 TKGPRAKRQKSYR 135
G RA+ QKSYR
Sbjct: 118 GPGARARYQKSYR 130
>sp|Q9YB48|RS9_AERPE 30S RIBOSOMAL PROTEIN S9P >gi|7440282|pir||A72558 probable
ribosomal protein S9 APE1749 - Aeropyrum pernix (strain
K1) >gi|5105437|dbj|BAA80750.1| (AP000062) 157aa long
hypothetical 30S ribosomal protein S9 [Aeropyrum pernix]
Length = 157
Score = 138 bits (344), Expect = 3e-32
Identities = 78/149 (52%), Positives = 102/149 (68%), Gaps = 17/149 (11%)
Query: 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVD 61
RI+ +TGKRK AIARAVIR G+GRV ING P+E+ E+AR ++EPL++AGE + + VD
Sbjct: 11 RIVISTGKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVD 70
Query: 62 IDVKVQGGGFMGQAEAARIAIARALVEWTG---------------DMNLKEKFIKYDRTM 106
I V+V+GGG MGQA+A R+AIAR LVE+ +L+ F+++DRTM
Sbjct: 71 IRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKISRDLRTAFLEHDRTM 130
Query: 107 LVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135
LVGDPRRTEP K R + R + QKSYR
Sbjct: 131 LVGDPRRTEPEKYMRYS--ARRRWQKSYR 157
>gb|AAK40430.1| SSU ribosomal protein S9AB (rps9AB) [Sulfolobus solfataricus]
Length = 140
Score = 127 bits (315), Expect = 7e-29
Identities = 66/134 (49%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVD 61
+++ ++ +RKTA A I GKGRV +N P+EL+ E+ R I+EPL+LAG +I + +D
Sbjct: 9 KLVISSARRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKID 68
Query: 62 IDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNR 121
+ GGG MGQA+AAR+A+ARALV++TG L++ + YDRTML GDPR+TE K R
Sbjct: 69 AKIITYGGGIMGQADAARMALARALVKFTGSKELEKIYRAYDRTMLAGDPRQTESEKWMR 128
Query: 122 STKGPRAKRQKSYR 135
+ R RQKSYR
Sbjct: 129 YS--ARRWRQKSYR 140
>sp|P95992|RS9_SULSO 30S RIBOSOMAL PROTEIN S9P >gi|7440286|pir||S75420 probable
ribosomal protein S9 - Sulfolobus solfataricus
>gi|1707826|emb|CAA69534.1| (Y08257) ribosomal protein
S9/S16 [Sulfolobus solfataricus]
Length = 140
Score = 127 bits (315), Expect = 7e-29
Identities = 66/134 (49%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVD 61
+++ ++ +RKTA A I GKGRV +N P+EL+ E+ R I+EPL+LAG +I + +D
Sbjct: 9 KLVISSARRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKID 68
Query: 62 IDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNR 121
+ GGG MGQA+AAR+A+ARALV++TG L++ + YDRTML GDPR+TE K R
Sbjct: 69 AKIITYGGGIMGQADAARMALARALVKFTGSKELEKIYRAYDRTMLAGDPRQTESEKWMR 128
Query: 122 STKGPRAKRQKSYR 135
+ R RQKSYR
Sbjct: 129 YS--ARRWRQKSYR 140
>emb|CAC11574.1| (AL445064) probable 30S ribosomal protein S9 [Thermoplasma
acidophilum]
Length = 129
Score = 126 bits (314), Expect = 9e-29
Identities = 70/130 (53%), Positives = 91/130 (69%), Gaps = 3/130 (2%)
Query: 6 TTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVK 65
TTGKRKTA+ARAV ++GKG V ING PVEL + R I+EPL++A E+ +DI VK
Sbjct: 3 TTGKRKTAVARAVAKKGKGIVTINGYPVELYPVRVLRNKIMEPLLIA-EDKAKDLDIAVK 61
Query: 66 VQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKG 125
V+GGG GQA+A+R AIARA+V++ D L+ F +YDRT++V D R P K +G
Sbjct: 62 VRGGGVTGQADASRTAIARAIVKYLNDTELENLFRQYDRTLIVNDVRIKLPKK--AGGRG 119
Query: 126 PRAKRQKSYR 135
RAK+QKSYR
Sbjct: 120 ARAKKQKSYR 129
>gi|6320120 Ribosomal protein S16B (rp61R); Rps16bp [Saccharomyces cerevisiae]
>gi|9755341|ref|NP_013863.2| Ribosomal protein S16A
(rp61R); Rps16ap [Saccharomyces cerevisiae]
>gi|730464|sp|P40213|RS16_YEAST 40S RIBOSOMAL PROTEIN
S16 (RP61R) >gi|2119075|pir||S67619 ribosomal protein
S16.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|606441|emb|CAA87357.1| (Z47071) putative ribosomal
protein [Saccharomyces cerevisiae]
>gi|1431106|emb|CAA98649.1| (Z74131) ORF YDL083c
[Saccharomyces cerevisiae]
Length = 143
Score = 119 bits (296), Expect = 1e-26
Identities = 64/139 (46%), Positives = 89/139 (63%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+QT GK+K+A A A ++ GKG +++NG P+ LVEPEI RF + EPL+L G + ++++DI
Sbjct: 7 VQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIR 66
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
V+V GGG + Q A R AIA+ LV + LK+ F YDRT+L+ D RR EP
Sbjct: 67 VRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEP 126
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K KG R++ QKSYR
Sbjct: 127 KK--FGGKGARSRFQKSYR 143
>sp|O94017|RS16_CANAL 40S RIBOSOMAL PROTEIN S16 >gi|3859690|emb|CAA21965.1| (AL033497)
40S ribosomal protein rps16 [Candida albicans]
Length = 142
Score = 118 bits (293), Expect = 3e-26
Identities = 66/139 (47%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+QT GK+KTA A A ++ GKG ++ING P+ LV+PEI RF + EPL L G + + +DI
Sbjct: 6 VQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIR 65
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
VKV GGG + Q A R AIA+ LV + LK+ F YD+T+LV D RR EP
Sbjct: 66 VKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEP 125
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G RA+ QKSYR
Sbjct: 126 KK--FGGRGARARFQKSYR 142
>sp|P39468|RS9_SULAC 30S RIBOSOMAL PROTEIN S9P >gi|629416|pir||S47026 ribosomal protein
S9 - Sulfolobus acidocaldarius
>gi|517293|emb|CAA56483.1| (X80194) ribosomal protein S9
[Sulfolobus acidocaldarius]
Length = 130
Score = 116 bits (288), Expect = 1e-25
Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Query: 6 TTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVK 65
T +R +A A I+ G G+V +N P+E++ E+ R+ I+EPL+LA ++I +S++ +
Sbjct: 3 TYARRSSARASCYIKPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAVDKITSSIEARIY 62
Query: 66 VQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKG 125
QGGG MGQA+AAR+A ARALV++T L E + YDRTML GDPR+TE K R +
Sbjct: 63 TQGGGIMGQADAARMAHARALVKFTNSKELVEIYKSYDRTMLAGDPRQTESEKWMRYS-- 120
Query: 126 PRAKRQKSYR 135
R RQK+YR
Sbjct: 121 ARRWRQKAYR 130
>pir||S69289 ribosomal protein S16.e.A - yeast (Saccharomyces cerevisiae)
Length = 143
Score = 116 bits (288), Expect = 1e-25
Identities = 63/137 (45%), Positives = 87/137 (62%), Gaps = 9/137 (6%)
Query: 6 TTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVK 65
T GK+K+A A A ++ GKG +++NG P+ LVEPEI RF + EPL+L G + ++++DI V+
Sbjct: 9 TFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVR 68
Query: 66 VQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHK 118
V GGG + Q A R AIA+ LV + LK+ F YDRT+L+ D RR EP K
Sbjct: 69 VTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKK 128
Query: 119 PNRSTKGPRAKRQKSYR 135
KG R++ QKSYR
Sbjct: 129 --FGGKGARSRFQKSYR 143
>sp|P46293|RS16_GOSHI 40S RIBOSOMAL PROTEIN S16 >gi|541835|pir||S41193 ribosomal protein
S16 protein - upland cotton >gi|439654|emb|CAA53567.1|
(X75954) RS16 protein, 40S subunit [Gossypium hirsutum]
Length = 145
Score = 115 bits (284), Expect = 3e-25
Identities = 61/139 (43%), Positives = 88/139 (62%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA+A + G+G ++ING P+ELVEPEI RF +EP++L G + + VD+
Sbjct: 9 VQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMR 68
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V+GGG Q A R +IA+ALV + +K+ + YDRT+LV DPRR EP
Sbjct: 69 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEP 128
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G RA+ QKSYR
Sbjct: 129 KK--FGGRGARARFQKSYR 145
>gb|AAF46862.1| (AE003458) CG4046 gene product [Drosophila melanogaster]
Length = 148
Score = 115 bits (284), Expect = 3e-25
Identities = 60/142 (42%), Positives = 91/142 (63%), Gaps = 9/142 (6%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
++ +Q G++KTA A A + G G +++NG+P+E +EP++ ++ + EPL+L G+E + V
Sbjct: 9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRR 113
DI V+V GGG + Q A R AI++ALV + +K+ ++YDRT+LVGDPRR
Sbjct: 69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128
Query: 114 TEPHKPNRSTKGPRAKRQKSYR 135
EP K G RA+ QKSYR
Sbjct: 129 CEPKK--FGGPGARARYQKSYR 148
>gb|AAF34799.1|AF227979_1 (AF227979) 40S ribosomal protein S16 [Euphorbia esula]
Length = 144
Score = 114 bits (283), Expect = 4e-25
Identities = 61/139 (43%), Positives = 87/139 (61%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA+A + G+G ++ING P+ELVEPEI RF EP++L G + VD+
Sbjct: 8 VQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMR 67
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V+GGG Q A R +IA+ALV + +K+ ++YDRT+LV DPRR EP
Sbjct: 68 IRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVADPRRCEP 127
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G RA+ QKSYR
Sbjct: 128 KK--FGGRGARARFQKSYR 144
>sp|Q22054|RS16_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S16 >gi|7506839|pir||T24280
hypothetical protein T01C3.6 - Caenorhabditis elegans
>gi|3879245|emb|CAB01658.1| (Z78413) predicted using
Genefinder~Similarity to Human 40S ribosomal protein S16
(SW:RS16_HUMAN), contains similarity to Pfam domain:
PF00380 (Ribosomal protein S9/S16), Score=249.9,
E-value=1.3e-77, N=1~cDNA EST yk636f8.3 comes from this
gene; cDNA E>
Length = 144
Score = 111 bits (276), Expect = 3e-24
Identities = 60/139 (43%), Positives = 87/139 (62%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+QT G++KTA A A ++G+G +++NG+P+E +EP+I R + EPL+L G+E + VDI
Sbjct: 8 VQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIR 67
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V GGG + Q A R A+A+ALV + LK F YD+++LV DPRR E
Sbjct: 68 IRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRES 127
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K G RA+ QKSYR
Sbjct: 128 KK--FGGPGARARYQKSYR 144
>sp|O60144|RS16_SCHPO 40S RIBOSOMAL PROTEIN S16 >gi|7489976|pir||T39778 40s ribosomal
protein S16 [similarity] - fission yeast
(Schizosaccharomyces pombe) >gi|3006191|emb|CAA18411.1|
(AL022304) 40s ribosomal protein s16.
[Schizosaccharomyces pombe] >gi|6692011|emb|CAB65805.1|
(AL136235) 40s ribosomal protein S16B
[Schizosaccharomyces pombe]
Length = 140
Score = 111 bits (275), Expect = 3e-24
Identities = 62/142 (43%), Positives = 87/142 (60%), Gaps = 9/142 (6%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
M+ +Q GK+ A A A + GKG +++NG P+ LV+PEI R + EP+++AG + + V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRR 113
DI V+V GGG + Q A R AI++A+V + LK+ I YDRT+LV DPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 114 TEPHKPNRSTKGPRAKRQKSYR 135
EP K G RA++QKSYR
Sbjct: 121 MEPKK--FGGHGARARQQKSYR 140
>gi|4506691 ribosomal protein S16 [Homo sapiens] >gi|11426147|ref|XP_009228.1|
ribosomal protein S16 [Homo sapiens]
>gi|133807|sp|P17008|RS16_HUMAN 40S RIBOSOMAL PROTEIN
S16 >gi|70918|pir||R3HU16 ribosomal protein S16,
cytosolic - human >gi|70919|pir||R3RT16 ribosomal
protein S16, cytosolic [validated] - rat
>gi|57714|emb|CAA35662.1| (X17665) ribosomal protein S16
(AA 1-146) [Rattus rattus] >gi|338447|gb|AAA60583.1|
(M60854) RPS16 [Homo sapiens]
Length = 146
Score = 110 bits (272), Expect = 8e-24
Identities = 58/142 (40%), Positives = 90/142 (62%), Gaps = 9/142 (6%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
++ +Q G++KTA A A + G G +++NG+P+E++EP ++ +LEP++L G+E + V
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRR 113
DI V+V+GGG + Q A R +I++ALV + +K+ I+YDRT+LV DPRR
Sbjct: 67 DIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRR 126
Query: 114 TEPHKPNRSTKGPRAKRQKSYR 135
E K G RA+ QKSYR
Sbjct: 127 CESKK--FGGPGARARYQKSYR 146
>pir||T43419 ribosomal protein S16 - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|3628750|dbj|BAA33368.1| (AB017604)
ribosomal protein S16 homolog [Schizosaccharomyces
pombe]
Length = 138
Score = 109 bits (271), Expect = 1e-23
Identities = 61/139 (43%), Positives = 85/139 (60%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q GK+ A A A + GKG +++NG P+ LV+PEI R + EP+++AG + + VDI
Sbjct: 2 VQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIR 61
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
V+V GGG + Q A R AI++A+V + LK+ I YDRT+LV DPRR EP
Sbjct: 62 VRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEP 121
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K G RA++QKSYR
Sbjct: 122 KK--FGGHGARARQQKSYR 138
>gb|AAD22696.1|AC006586_5 (AC006586) 40S ribosomal protein S16 [Arabidopsis thaliana]
Length = 146
Score = 109 bits (271), Expect = 1e-23
Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA+A + G G +++NG P+EL +PEI RF I EP++L G+ + V++
Sbjct: 10 VQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMR 69
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V GGG Q A R +IA+ALV + +K+ ++YDRT+LV DPRR EP
Sbjct: 70 IRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 129
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G R++ QKSYR
Sbjct: 130 KK--FGGRGARSRYQKSYR 146
>sp|Q42340|RS16_ARATH 40S RIBOSOMAL PROTEIN S16
Length = 146
Score = 109 bits (270), Expect = 1e-23
Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA+A + G G +++NG P+EL +PEI RF I EP++L G+ + V++
Sbjct: 10 VQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMR 69
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V GGG Q A R +IA+ALV + +K+ ++YDRT+LV DPRR EP
Sbjct: 70 IRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 129
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G R++ QKSYR
Sbjct: 130 KK--FGGRGARSRYQKSYR 146
>sp|O22647|RS16_FRIAG 40S RIBOSOMAL PROTEIN S16 >gi|2641209|gb|AAB86856.1| (AF031546)
ribosomal protein S16 [Fritillaria agrestis]
Length = 145
Score = 109 bits (270), Expect = 1e-23
Identities = 57/139 (41%), Positives = 87/139 (62%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA+A + G+G +++NG P+ELV+PEI R+ EP++L G + VD+
Sbjct: 9 VQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMR 68
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V+GGG Q A R +IA+ALV + +K+ ++YDRT+LV DPRR EP
Sbjct: 69 IRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEP 128
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G R++ QKSYR
Sbjct: 129 KK--FGGRGARSRFQKSYR 145
>sp|P46294|RS16_ORYSA 40S RIBOSOMAL PROTEIN S16 >gi|7440266|pir||T04083 probable
ribosomal protein S16 - rice >gi|538428|gb|AAA33916.1|
(L36313) ribosomal protein S16 [Oryza sativa]
>gi|1096552|prf||2111468A ribosomal protein S16 [Oryza
sativa]
Length = 149
Score = 108 bits (267), Expect = 3e-23
Identities = 56/139 (40%), Positives = 85/139 (60%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++K A+A + + G+G +++NG P+EL+ PE+ R EP++LAG + +D+
Sbjct: 13 VQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V+GGG Q A R AIA+ALV + +K+ F +YDRT+LV DPRR EP
Sbjct: 73 IRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEP 132
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K + RA+ QKSYR
Sbjct: 133 KK--FGGRRARARFQKSYR 149
>gi|7305445 ribosomal protein S16 [Mus musculus]
>gi|133810|sp|P14131|RS16_MOUSE 40S RIBOSOMAL PROTEIN
S16 >gi|200796|gb|AAA03646.1| (M11408) 16S ribosomal
protein [Mus musculus]
Length = 145
Score = 105 bits (259), Expect = 3e-22
Identities = 57/142 (40%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
++ +Q G++KT +A A + G G +++NG+P+E++EP ++ +LEP++L G+E + V
Sbjct: 7 LQSVQVFGRKKT-LAVAHCKRGNGLIKVNGRPLEMIEPRALQYKLLEPVLLLGKERFAGV 65
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRR 113
DI V+V+GGG + Q A R +I++ALV + +K+ I+YDRT+LV DPRR
Sbjct: 66 DIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRR 125
Query: 114 TEPHKPNRSTKGPRAKRQKSYR 135
E K G RA+ QKSYR
Sbjct: 126 CESKK--FGGPGARARYQKSYR 145
>gb|AAD23965.1|AF108725_1 (AF108725) ribosomal protein S16 [Tortula ruralis]
Length = 142
Score = 104 bits (258), Expect = 3e-22
Identities = 58/139 (41%), Positives = 85/139 (60%), Gaps = 10/139 (7%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA+A R G+G +R+ P+ELVEPEI R+ EP++L G + VD+
Sbjct: 7 VQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMR 65
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++V+GGG Q A R +IA+ALV + +K+ ++YDRT+LV DPRR EP
Sbjct: 66 IRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEP 125
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K +G R++ QKSYR
Sbjct: 126 KK--FGGRGARSRFQKSYR 142
>gb|AAF26790.1|AC016829_14 (AC016829) putative 40S ribosomal protein S16 [Arabidopsis
thaliana]
Length = 146
Score = 103 bits (255), Expect = 7e-22
Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63
+Q G++KTA A + G G +++NG P+EL +PEI RF I EP++L G+ + VD+
Sbjct: 10 VQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMR 69
Query: 64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116
++ GGG + A R +IA+ALV + +K+ ++YDRT+LV DPRR E
Sbjct: 70 IRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCES 129
Query: 117 HKPNRSTKGPRAKRQKSYR 135
K G RA+ QKSYR
Sbjct: 130 KK--FGGPGARARFQKSYR 146
>pir||R3MS16 ribosomal protein S16 - mouse
Length = 145
Score = 102 bits (252), Expect = 2e-21
Identities = 55/142 (38%), Positives = 89/142 (61%), Gaps = 10/142 (7%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
++ +Q G+++T +A A + G G +++NG+P+E++EP ++ +LEP++L G+E + V
Sbjct: 7 LQSVQVFGRKET-LAVAHCKRGNGLIKVNGRPLEMIEPRALQYKVLEPVLLLGKERFAGV 65
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRR 113
DI V+V+GGG + Q R +I++ALV + +K+ I+YDRT+LV DPRR
Sbjct: 66 DIRVRVKGGGHVAQIYGIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRR 125
Query: 114 TEPHKPNRSTKGPRAKRQKSYR 135
E K G RA+ QKSYR
Sbjct: 126 CESKK--FGGPGARARYQKSYR 145
>sp|P16149|RS16_LUPPO 40S RIBOSOMAL PROTEIN S16 >gi|70921|pir||R3YL16 ribosomal protein
S16, cytosolic - large-leaved lupine
>gi|19512|emb|CAA36068.1| (X51766) rps16 gene product
(AA 1-145) [Lupinus polyphyllus]
Length = 145
Score = 101 bits (248), Expect = 5e-21
Identities = 54/119 (45%), Positives = 75/119 (62%), Gaps = 9/119 (7%)
Query: 24 GRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIA 83
G ++ING P+ELVEPEI RF EP++L G+ + VD+ ++V+GGG Q A R +IA
Sbjct: 29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIA 88
Query: 84 RALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135
+ALV + +K+ ++YDRT+LV DPRR EP K +G RA+ QKSYR
Sbjct: 89 KALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 145
>sp|Q29201|RS16_PIG 40S RIBOSOMAL PROTEIN S16
Length = 136
Score = 99.1 bits (243), Expect = 2e-20
Identities = 49/125 (39%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSV 60
++ +Q G++KTA A A + G G +++NG+P+E++EP ++ +LEP++L G+E + V
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 61 DIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRR 113
DI V+V+GGG + Q A R +I +ALV + +K+ I+YDRT+LV DP R
Sbjct: 67 DIRVRVKGGGHVAQIYAIRQSIXKALVAYYQKYVDEASKKXIKDILIQYDRTLLVADPXR 126
Query: 114 TEPHK 118
E K
Sbjct: 127 CESKK 131
>gb|AAG19523.1| (AE005043) 30S ribosomal protein S9P; Rps9p [Halobacterium sp.
NRC-1]
Length = 94
Score = 88.9 bits (217), Expect = 2e-17
Identities = 47/96 (48%), Positives = 63/96 (64%), Gaps = 2/96 (2%)
Query: 40 IARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKF 99
+AR +LEP ++G ++ VDID+ V GGGF GQA+A R AIAR LVE GD L++ F
Sbjct: 1 MARLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHYGDAELRDAF 60
Query: 100 IKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135
++DR++LV D R+ E K G RA+ QKSYR
Sbjct: 61 REFDRSLLVNDVRQRESKK--WGGPGARARYQKSYR 94
>pir||H81705 ribosomal protein S9 TC0402 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190444|gb|AAF39259.1| (AE002307)
ribosomal protein S9 [Chlamydia muridarum]
Length = 133
Score = 76.5 bits (185), Expect = 1e-13
Identities = 48/130 (36%), Positives = 73/130 (55%), Gaps = 13/130 (10%)
Query: 7 TGKRKTAIARAVIREGKGRVRINGKPVELVEP-EIARFTILEPLILAGEEIWNSVDIDVK 65
TG+RK A++ +R G G++ +NGK +E P E+ R TIL PL + G+ NS D+ ++
Sbjct: 12 TGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLKMLGDV--NSFDLIIR 69
Query: 66 VQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKG 125
V GGG GQ A R+ +ARA+++ DM + K + L DPR+ E K R
Sbjct: 70 VSGGGVQGQVIATRLGLARAVLQEKEDMKQELK----SQGFLTRDPRKKERKKYGRK--- 122
Query: 126 PRAKRQKSYR 135
K +KS++
Sbjct: 123 ---KARKSFQ 129
>sp|O84128|RS9_CHLTR 30S RIBOSOMAL PROTEIN S9 >gi|7440276|pir||B71554 probable S9
ribosomal protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328525|gb|AAC67717.1| (AE001286) S9
Ribosomal Protein [Chlamydia trachomatis]
Length = 129
Score = 75.7 bits (183), Expect = 2e-13
Identities = 48/130 (36%), Positives = 73/130 (55%), Gaps = 13/130 (10%)
Query: 7 TGKRKTAIARAVIREGKGRVRINGKPVELVEP-EIARFTILEPLILAGEEIWNSVDIDVK 65
TG+RK A++ +R G G++ +NGK +E P E+ R TIL PL + G+ NS D+ ++
Sbjct: 8 TGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGDV--NSFDLIIR 65
Query: 66 VQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKG 125
V GGG GQ A R+ +ARA+++ DM + K + L DPR+ E K R
Sbjct: 66 VSGGGVQGQVIATRLGLARAVLQEKEDMKQELK----AQGFLTRDPRKKERKKYGRK--- 118
Query: 126 PRAKRQKSYR 135
K +KS++
Sbjct: 119 ---KARKSFQ 125
>sp|Q9X1G4|RS9_THEMA 30S RIBOSOMAL PROTEIN S9 >gi|7440280|pir||F72250 ribosomal protein
S9 - Thermotoga maritima (strain MSB8)
>gi|4982018|gb|AAD36521.1|AE001797_1 (AE001797)
ribosomal protein S9 [Thermotoga maritima]
Length = 134
Score = 74.1 bits (179), Expect = 6e-13
Identities = 49/120 (40%), Positives = 70/120 (57%), Gaps = 18/120 (15%)
Query: 7 TGKRKTAIARAVIREGKGRVRINGKPVELV-----EPEIARFTILEPLILAGEEIWNSV- 60
TG+RKTA+AR +R G+G+V++NGK E + P + I EPL E+ N++
Sbjct: 10 TGRRKTAVARVYLRPGEGKVKVNGKEYESLNDYFKNPAWTKHAI-EPL-----EVTNTLG 63
Query: 61 --DIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHK 118
D+ ++V GGG GQ+ A R+ IARAL+++ D NL+ KY ML DPR E K
Sbjct: 64 KFDLVIRVNGGGLSGQSGAVRLGIARALLQY--DQNLRPVLKKY--KMLTRDPREVERKK 119
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49011595
Number of Sequences: 2977
Number of extensions: 1878296
Number of successful extensions: 5408
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5339
Number of HSP's gapped (non-prelim): 36
length of query: 135
length of database: 189,106,746
effective HSP length: 54
effective length of query: 81
effective length of database: 156,788,448
effective search space: 12699864288
effective search space used: 12699864288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)