BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0371 (PAB0371) DE:Hypothetical protein
         (124 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75172 hypothetical protein PAB0371 - Pyrococcus abyssi (st...   236  5e-62
pir||B71027 probable nfeD protein - Pyrococcus horikoshii >gi|32...    70  1e-11
pir||C75107 nodulation protein nfed PAB1932 - Pyrococcus abyssi ...    69  2e-11

>pir||G75172 hypothetical protein PAB0371 - Pyrococcus abyssi (strain Orsay)
           >gi|5457972|emb|CAB49462.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 124
           
 Score =  236 bits (597), Expect = 5e-62
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MLNFLKILAILSDEIAVLVFFLLILPELGFNIPLKLVLILVSILVLKDALLIKLFLDVLK 60
           MLNFLKILAILSDEIAVLVFFLLILPELGFNIPLKLVLILVSILVLKDALLIKLFLDVLK
Sbjct: 1   MLNFLKILAILSDEIAVLVFFLLILPELGFNIPLKLVLILVSILVLKDALLIKLFLDVLK 60

Query: 61  KKPEVGIEGLIGERGIVVEDLTPEGMIKVRGELWRARAISGSIKKREAVKVIRVEGNIMI 120
           KKPEVGIEGLIGERGIVVEDLTPEGMIKVRGELWRARAISGSIKKREAVKVIRVEGNIMI
Sbjct: 61  KKPEVGIEGLIGERGIVVEDLTPEGMIKVRGELWRARAISGSIKKREAVKVIRVEGNIMI 120

Query: 121 VERW 124
           VERW
Sbjct: 121 VERW 124


>pir||B71027 probable nfeD protein - Pyrococcus horikoshii
           >gi|3257935|dbj|BAA30618.1| (AP000006) 441aa long
           hypothetical nfeD protein [Pyrococcus horikoshii]
           Length = 441
           
 Score = 69.9 bits (168), Expect = 1e-11
 Identities = 40/89 (44%), Positives = 57/89 (63%), Gaps = 1/89 (1%)

Query: 36  LVLILVSILVLKDALLIKLFLDVLKKKPEVGIEGLIGERGIVVEDLTPEGMIKVRGELWR 95
           L++ + +IL    A  +   +   KKK   G E +IG  G VVE+L PEGMIKVRGELW+
Sbjct: 345 LIITVGAILAAFFAFGMAAVIRAHKKKARTGKEEMIGLIGTVVEELNPEGMIKVRGELWK 404

Query: 96  ARA-ISGSIKKREAVKVIRVEGNIMIVER 123
           AR+  +G I+K E V+V+ ++G  +IV R
Sbjct: 405 ARSKFNGKIEKGEKVRVVDMDGLTLIVVR 433


>pir||C75107 nodulation protein nfed PAB1932 - Pyrococcus abyssi (strain Orsay)
           >gi|5458083|emb|CAB49572.1| (AJ248285) NODULATION
           PROTEIN NFED [Pyrococcus abyssi]
           Length = 440
           
 Score = 69.1 bits (166), Expect = 2e-11
 Identities = 39/92 (42%), Positives = 59/92 (63%), Gaps = 2/92 (2%)

Query: 34  LKLVLILVSILVLKD-ALLIKLFLDVLKKKPEVGIEGLIGERGIVVEDLTPEGMIKVRGE 92
           L++++I V +++    A  +   +   ++K   G E +IG  G VVE+L PEGM+KVRGE
Sbjct: 342 LRILIITVGVILAAFFAFGMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGE 401

Query: 93  LWRARAISG-SIKKREAVKVIRVEGNIMIVER 123
           LWRAR+  G  I+K E +KV+ +EG  +IV R
Sbjct: 402 LWRARSKFGEKIEKGERIKVVDIEGLTLIVVR 433


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.150    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40268764
Number of Sequences: 2977
Number of extensions: 1500379
Number of successful extensions: 4606
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4604
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 189,106,746
effective HSP length: 51
effective length of query: 73
effective length of database: 158,583,909
effective search space: 11576625357
effective search space used: 11576625357
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)