BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0377 (spoIIM-like) DE:STAGE II SPORULATION PROTEIN M related
(186 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75173 stage II sporulation protein m related PAB0377 - Pyr... 364 e-100
pir||D71041 hypothetical protein PH1620 - Pyrococcus horikoshii ... 246 1e-64
gi|11498232 conserved hypothetical protein [Archaeoglobus fulgid... 83 2e-15
pir||B71138 hypothetical protein PH0870 - Pyrococcus horikoshii ... 81 8e-15
sp|Q58203|Y793_METJA HYPOTHETICAL PROTEIN MJ0793 >gi|2128507|pir... 77 2e-13
dbj|BAB04452.1| (AP001509) unknown conserved protein in others [... 70 2e-11
pir||F69131 conserved hypothetical protein MTH252 - Methanobacte... 68 8e-11
>pir||E75173 stage II sporulation protein m related PAB0377 - Pyrococcus abyssi
(strain Orsay) >gi|5457978|emb|CAB49468.1| (AJ248284)
STAGE II SPORULATION PROTEIN M related [Pyrococcus
abyssi]
Length = 186
Score = 364 bits (924), Expect = e-100
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MRRNSTIFILLLVTFIVGTLIGWGIAKVNPELAKNTYMILRRILGGGELPQGFKLFMLIF 60
MRRNSTIFILLLVTFIVGTLIGWGIAKVNPELAKNTYMILRRILGGGELPQGFKLFMLIF
Sbjct: 1 MRRNSTIFILLLVTFIVGTLIGWGIAKVNPELAKNTYMILRRILGGGELPQGFKLFMLIF 60
Query: 61 LNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSILPHGVV 120
LNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSILPHGVV
Sbjct: 61 LNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSILPHGVV 120
Query: 121 EIPAFAVAGVGGINWFLELIHGEGNFGERFRRGFRKMLKFLILSVVLLFIAALIEAFITP 180
EIPAFAVAGVGGINWFLELIHGEGNFGERFRRGFRKMLKFLILSVVLLFIAALIEAFITP
Sbjct: 121 EIPAFAVAGVGGINWFLELIHGEGNFGERFRRGFRKMLKFLILSVVLLFIAALIEAFITP 180
Query: 181 RLIGLA 186
RLIGLA
Sbjct: 181 RLIGLA 186
>pir||D71041 hypothetical protein PH1620 - Pyrococcus horikoshii
>gi|3258049|dbj|BAA30732.1| (AP000006) 185aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 185
Score = 246 bits (622), Expect = 1e-64
Identities = 114/186 (61%), Positives = 153/186 (81%), Gaps = 1/186 (0%)
Query: 1 MRRNSTIFILLLVTFIVGTLIGWGIAKVNPELAKNTYMILRRILGGGELPQGFKLFMLIF 60
M RN +FI+LL FI GTLIGW + ++P LA++ YM+LR++LGG +LP+GF+LF+LIF
Sbjct: 1 MSRNLKLFIILLGVFIFGTLIGWIVGLLDPNLAEHAYMVLRKLLGGNKLPEGFELFILIF 60
Query: 61 LNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSILPHGVV 120
LNN RVA ++AFG ++ GI+PFLVLL NG++VG+V+ + S VP SK+LLSI+PHG+V
Sbjct: 61 LNNVRVATIIAFGGIILGIVPFLVLLFNGIVVGIVISYT-ASRGVPGSKILLSIIPHGIV 119
Query: 121 EIPAFAVAGVGGINWFLELIHGEGNFGERFRRGFRKMLKFLILSVVLLFIAALIEAFITP 180
EIPAF +AG+GGINWFLE++ GEG RF+RGF+ ML+FLIL++ LLFIAALIEAFITP
Sbjct: 120 EIPAFIIAGIGGINWFLEVVKGEGELENRFKRGFKIMLRFLILAISLLFIAALIEAFITP 179
Query: 181 RLIGLA 186
+L G++
Sbjct: 180 KLAGIS 185
>gi|11498232 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7437625|pir||H69327 conserved hypothetical protein
AF0624 - Archaeoglobus fulgidus
>gi|2649995|gb|AAB90615.1| (AE001061) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 185
Score = 83.1 bits (202), Expect = 2e-15
Identities = 52/145 (35%), Positives = 79/145 (53%), Gaps = 10/145 (6%)
Query: 46 GGELPQGFKLFMLIFLNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEV 105
GG L ++IF NN +++ FGI P ++LNG IVG+V+ +
Sbjct: 47 GGFFDNPIILALIIFANNAGKSLIAMLAGFFFGIFPIAFVMLNGYIVGVVIS--WREPDW 104
Query: 106 PFSKVLLSILPHGVVEIPAFAVAGVGGI----NWFLELIHGEGNFGERFRRGFRKMLKFL 161
+KV+L+I+PHG++EIPA +A G+ ++L L GE F + R R +K
Sbjct: 105 GLAKVVLAIIPHGILEIPAIIIACAYGVWLGYRFYLALFRGE-EFKKYLLRAVRVYVK-- 161
Query: 162 ILSVVLLFIAALIEAFITPRLIGLA 186
L + +L IAA +EAFITP ++G A
Sbjct: 162 -LVLPILLIAAFVEAFITPVVVGAA 185
>pir||B71138 hypothetical protein PH0870 - Pyrococcus horikoshii
>gi|3257281|dbj|BAA29964.1| (AP000003) 165aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 165
Score = 81.1 bits (197), Expect = 8e-15
Identities = 49/129 (37%), Positives = 72/129 (54%), Gaps = 4/129 (3%)
Query: 56 FMLIFLNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSIL 115
F+ F +N +VA+++ GAL FG L L NGMI+G V +E++ K +L IL
Sbjct: 34 FLFFFRHNVKVALMLWSGALTFGGTTLLNLAFNGMILGSAVKTT--AEQIGLIKTILLIL 91
Query: 116 PHGVVEIPAFAVAGVGGINWFLELIHGEGNFGERF--RRGFRKMLKFLILSVVLLFIAAL 173
PHGV EIPA +AG G EL+ E ++ K + +S+VL+FIAAL
Sbjct: 92 PHGVFEIPAIIIAGAAGFKIPYELLRFALGRKEEIITEEDAKEFFKLIAISIVLIFIAAL 151
Query: 174 IEAFITPRL 182
IE+ +T ++
Sbjct: 152 IESTVTVKI 160
>sp|Q58203|Y793_METJA HYPOTHETICAL PROTEIN MJ0793 >gi|2128507|pir||A64399 hypothetical
protein MJ0793 - Methanococcus jannaschii
>gi|1499615|gb|AAB98796.1| (U67524) M. jannaschii
predicted coding region MJ0793 [Methanococcus
jannaschii]
Length = 178
Score = 76.9 bits (186), Expect = 2e-13
Identities = 52/180 (28%), Positives = 90/180 (49%), Gaps = 19/180 (10%)
Query: 9 ILLLVTFIVGTLIGW----GIAKVNPELAKNTYMILRRILGGGELPQGFKLFMLIFLNNT 64
IL L+ F +G + G+ ++K+N + N +P F I NN
Sbjct: 6 ILTLMLFSLGFIFGFISINNLSKINDKDLSNY------------IPNIQFNFPSILTNNL 53
Query: 65 RVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSILPHGVVEIPA 124
+V L+ G++ FG+ F+ L+ NG VG+++G + ++ E P + ILPHG+ EI A
Sbjct: 54 KVIFLMLAGSITFGLSTFINLIFNGFNVGVLIGSISLTNE-PLKLITALILPHGIFEISA 112
Query: 125 FAVAGVGG--INWFLELIHGEGNFGERFRRGFRKMLKFLILSVVLLFIAALIEAFITPRL 182
++ V G I + + L + + LK ++S++L+ IAA IE +ITP++
Sbjct: 113 MLISAVAGFKIPYKVTLYLLDKKEKPLTEEDIKDFLKLSLISIILIVIAAFIEVYITPKI 172
>dbj|BAB04452.1| (AP001509) unknown conserved protein in others [Bacillus
halodurans]
Length = 355
Score = 69.9 bits (168), Expect = 2e-11
Identities = 58/191 (30%), Positives = 90/191 (46%), Gaps = 19/191 (9%)
Query: 8 FILL-LVTFIVGTLIGWGIAKVNPELAKNTYMIL----------RRILGGGELPQGFKLF 56
FIL L+ FIVG G+ +P N Y++L R+ G +
Sbjct: 106 FILAALLLFIVGGFAGFFAVWTDP---MNLYVVLPPEISNAVDPHRVGEGHDQLANATFS 162
Query: 57 MLIFLNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLS-IL 115
I +NN RVA+L + FG++ +L+ NG+I+G + S S V + IL
Sbjct: 163 SEIMVNNIRVAILAFVAGITFGLLTIYLLVYNGLIIGALAALFWHS---GMSYVFWAYIL 219
Query: 116 PHGVVEIPAFAVAGVGGINWFLELIH-GEGNFGERFRRGFRKMLKFLILSVVLLFIAALI 174
PHG++E+ A +AG G+ +IH G + R R ++ L+ ++ L IA LI
Sbjct: 220 PHGIIELVAIFIAGGSGLYLGYRMIHPGPFTWKYRLLRTVKESALLLLGTIPLFVIAGLI 279
Query: 175 EAFITPRLIGL 185
E +ITP + L
Sbjct: 280 EGYITPSTLSL 290
>pir||F69131 conserved hypothetical protein MTH252 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621302|gb|AAB84758.1| (AE000812) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 219
Score = 67.9 bits (163), Expect = 8e-11
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 1 MRRNSTIFILLLVTFIVGTLIGWGIAKVNPELAKNTYMILRRILGGGELPQGFKLFMLIF 60
+R N T + F++ G+ + +L + RR + GE+ IF
Sbjct: 23 IRNNETFLLASTFLFLISLFGGYLFSGSIGDLIRPLMDEFRRSVAEGEIKLSTAS---IF 79
Query: 61 LNNTRVAVLVAFGALLFGIIPFLVLLLNGMIVGLVVGHVMISEEVPFSKVLLSILPHGVV 120
++N + A+L+ G LL G+ L L++NG+ +G + +VP + LPHG+
Sbjct: 80 IHNLQAALLIYGGGLLLGVFTALFLIVNGLFIG------FFASQVPLDDFVFLTLPHGIF 133
Query: 121 EIPAFAVAGVGGI-------NWFLELIHGE--GNFGER----FRRGFRKMLKFLIL---S 164
EIP +AG G ++F +L+ G+F ER R ++++ L+L
Sbjct: 134 EIPGLIIAGAAGFRLASFIYHFFSDLLTESWYGSFTERVVHFLGRNQDELVESLLLLGVG 193
Query: 165 VVLLFIAALIEAFIT 179
VV L +AA +EA +T
Sbjct: 194 VVFLVVAAFVEANLT 208
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.334 0.153 0.452
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65326326
Number of Sequences: 2977
Number of extensions: 2675787
Number of successful extensions: 9814
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9801
Number of HSP's gapped (non-prelim): 7
length of query: 186
length of database: 189,106,746
effective HSP length: 48
effective length of query: 138
effective length of database: 160,379,370
effective search space: 22132353060
effective search space used: 22132353060
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 163 (67.9 bits)