BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0379 (wlbD) DE:UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE
(381 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75173 udp-n-acetylglucosamine 2-epimerase PAB0379 - Pyroco... 748 0.0
pir||A71041 probable UDP-N-acetylglucosamine 2-epimerase - Pyroc... 594 e-169
pir||G64487 lipopolysaccharide biosynthesis protein bplD homolog... 403 e-111
pir||F69211 UDP-N-acetylglucosamine 2-epimerase - Methanobacteri... 391 e-108
pir||F72355 lipopolysaccharide biosynthesis protein - Thermotoga... 275 4e-73
emb|CAA07668.1| (AJ007747) putative UDP-N-acetylglucosamine 2-ep... 269 3e-71
pir||S70675 bplD protein - Bordetella pertussis >gi|992974|emb|C... 268 7e-71
pir||C83253 probable UDP-N-acetylglucosamine 2-epimerase WbpI PA... 252 6e-66
gb|AAC45863.1| (U50396) WbpI [Pseudomonas aeruginosa] 249 4e-65
gb|AAB49436.1| (U73374) Cap8G [Staphylococcus aureus] 234 1e-60
gb|AAD52173.1|AF144879_12 (AF144879) unknown [Leptospira interro... 232 6e-60
gb|AAC46090.1| (U81973) Cap5G [Staphylococcus aureus] 231 1e-59
gb|AAD12956.1| (AF078135) unknown [Leptospira borgpetersenii] 229 3e-59
gb|AAF21032.1|AF209197_1 (AF209197) UDP-GlcNAc 2-epimerase [Stap... 228 7e-59
pir||H71689 probable UDP-n-acetylglucosamine 2-epimerase (rffE) ... 228 1e-58
pir||A72304 UDP-N-acetylglucosamine 2-epimerase - Thermotoga mar... 220 2e-56
gb|AAC46099.1| (U81973) Cap5P [Staphylococcus aureus] 216 4e-55
gb|AAB66525.1| (AF004325) UDP-N-acetylglucosamine-2-epimerase [S... 215 6e-55
gb|AAD45267.1|AF147795_8 (AF147795) WbjD [Pseudomonas aeruginosa... 215 9e-55
gb|AAB49445.1| (U73374) Cap8P [Staphylococcus aureus] 213 2e-54
gb|AAD19924.1| (AF105116) UDP-N-acetyl glucosamine-2-epimerase [... 211 1e-53
gb|AAF08249.1|AF170495_10 (AF170495) UDP-N-acetylmannosamine deh... 211 1e-53
gb|AAC78673.1| (AF094575) UDP-N-acetylglucosamine-2-epimerase Cp... 210 2e-53
gb|AAD19912.1| (AF105113) UDP-N-acetyl glucosamine-2-epimerase [... 210 3e-53
gb|AAG26478.1|AF285774_18 (AF285774) putative epimerase [Bactero... 209 4e-53
sp|P27828|WECB_ECOLI UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (UDP-GL... 208 6e-53
gb|AAF68965.1|AF245690_2 (AF245690) putative N-acetyl-glucosamin... 206 4e-52
sp|P39131|YVYH_BACSU PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERAS... 205 1e-51
pir||E65182 bacteriophage N4 adsorption protein - Escherichia co... 204 1e-51
gb|AAA67586.1| (M87049) o389 [Escherichia coli] 203 2e-51
pir||S30680 hypothetical protein o389 - Escherichia coli 203 2e-51
gb|AAF67263.1|AF169324_1 (AF169324) BcbA [Pasteurella multocida] 203 4e-51
gb|AAC44968.1| (U09239) UDP-N-acetylglucosamine-2-epimerase [Str... 201 1e-50
pir||T44828 probable UDP-N-acetylglucosamine 2-epimerase (EC 5.1... 200 2e-50
gb|AAD56736.1|AF125164_9 (AF125164) UDP-GlcNAc 2-epimerase [Bact... 199 4e-50
gb|AAF33467.1| (AF233324) 86% identity to with E. coli UDP-N-ace... 194 1e-48
pir||A82264 UDP-N-acetylglucosamine 2-epimerase VC0917 [imported... 192 4e-48
sp|P52641|EPSC_BURSO PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERAS... 192 5e-48
sp|P52642|RFBC_SALBO UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (UDP-GL... 192 5e-48
pir||S76682 hypothetical protein - Synechocystis sp. (strain PCC... 187 1e-46
pir||B82014 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) NM... 184 2e-45
gb|AAC38285.1| (AF019760) putative UDP-N-acetyl-D-glucosamine 2-... 182 5e-45
gb|AAD56744.1|AF125164_17 (AF125164) putative epimerase [Bactero... 180 2e-44
pir||A75380 UDP-N-acetylglucosamine 2-epimerase - Deinococcus ra... 164 1e-39
gb|AAC26022.1| (AF072734) NfrC homolog [Clostridium acetobutylicum] 136 5e-31
emb|CAA46484.1| (X65511) ORF [Anabaena sp.] 111 1e-23
gb|AAG20672.1| (AE005136) UDP-N-acetylglucosamine 2-epimerase; U... 93 6e-18
emb|CAB65211.1| (AJ007311) N-acylglucosamine 2-epimerase [Legion... 69 6e-11
>pir||H75173 udp-n-acetylglucosamine 2-epimerase PAB0379 - Pyrococcus abyssi
(strain Orsay) >gi|5457981|emb|CAB49471.1| (AJ248284)
UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE [Pyrococcus abyssi]
Length = 381
Score = 748 bits (1910), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL
Sbjct: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL
Sbjct: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
Query: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI 180
RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI
Sbjct: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI 180
Query: 181 AEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSLPMQVVYPVHPRAEKR 240
AEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSLPMQVVYPVHPRAEKR
Sbjct: 181 AEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSLPMQVVYPVHPRAEKR 240
Query: 241 LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYN 300
LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYN
Sbjct: 241 LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYN 300
Query: 301 TERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILM 360
TERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILM
Sbjct: 301 TERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILM 360
Query: 361 TLWESGRLKVKTSNFITPQKA 381
TLWESGRLKVKTSNFITPQKA
Sbjct: 361 TLWESGRLKVKTSNFITPQKA 381
>pir||A71041 probable UDP-N-acetylglucosamine 2-epimerase - Pyrococcus
horikoshii >gi|3258046|dbj|BAA30729.1| (AP000006) 336aa
long hypothetical UDP-N-acetylglucosamine 2-epimerase
[Pyrococcus horikoshii]
Length = 336
Score = 594 bits (1515), Expect = e-169
Identities = 298/336 (88%), Positives = 321/336 (94%), Gaps = 1/336 (0%)
Query: 43 MSSIFLEELELPEIDYHLEVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAG 102
MS+IFLEELELPEIDYHLEVGSGTQAEQTGI MIKIEKVL+ E PDVSIVQGDTNT LAG
Sbjct: 1 MSNIFLEELELPEIDYHLEVGSGTQAEQTGIGMIKIEKVLIEEKPDVSIVQGDTNTALAG 60
Query: 103 ALASVKLLIPVAHVEAGLRSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN 162
ALASVKLLIPVAHVEAGLRSFDRTMPEEINRIL DHSSEVLFAPTLEAK NLEREGIREN
Sbjct: 61 ALASVKLLIPVAHVEAGLRSFDRTMPEEINRILTDHSSEVLFAPTLEAKANLEREGIREN 120
Query: 163 VFVVGNTIVDAVLQNSKIAEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDIL 222
VFVVGNTIVDAVLQNSKIAEKKSKIL++LGL PK YILVTAHRKENVD+KD+L+KLV+IL
Sbjct: 121 VFVVGNTIVDAVLQNSKIAEKKSKILTKLGLSPKEYILVTAHRKENVDDKDKLRKLVEIL 180
Query: 223 TSLPMQVVYPVHPRAEKRLKEFGLWDRLKSS-GVMLLKPLGYLDFLKLEKNAFIVMTDSG 281
TSLPMQVVYPVHPR E RL+EFGLWD LKS+ VMLLKPLGYLDFLKLEKNAFI+MTDSG
Sbjct: 181 TSLPMQVVYPVHPRTESRLREFGLWDALKSAPNVMLLKPLGYLDFLKLEKNAFIIMTDSG 240
Query: 282 GIQEEAIILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMAS 341
GIQEEAIILNVPCLTLRYNTERPET+KAGGNILVG+EKD+ALRYV+KLIEDE FYKRM+S
Sbjct: 241 GIQEEAIILNVPCLTLRYNTERPETLKAGGNILVGLEKDIALRYVRKLIEDEEFYKRMSS 300
Query: 342 AKNPFGDGRSGERIVSILMTLWESGRLKVKTSNFIT 377
AKNPFGDG+SGERIV+IL+TLWESG+LKV+ SNF++
Sbjct: 301 AKNPFGDGKSGERIVNILITLWESGKLKVRASNFLS 336
>pir||G64487 lipopolysaccharide biosynthesis protein bplD homolog -
Methanococcus jannaschii >gi|1592138|gb|AAB99517.1|
(U67591) lipopolysaccharide biosynthesis protein (wbpI)
[Methanococcus jannaschii]
Length = 366
Score = 403 bits (1025), Expect = e-111
Identities = 215/367 (58%), Positives = 264/367 (71%), Gaps = 14/367 (3%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
M+ +II GTRPEIIKLSP+IRA K +I +IHT QHY M IF EEL LP Y+L
Sbjct: 1 MKLSIILGTRPEIIKLSPIIRALEKTNIDWHIIHTNQHYSENMDKIFFEELNLPNPKYNL 60
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
+GSGT EQTG +I+IEKVL+ E PDV +VQGDTNTVLAGAL + KL I VAHVEAGL
Sbjct: 61 NIGSGTHGEQTGKMLIEIEKVLLKEKPDVVVVQGDTNTVLAGALVASKLKIDVAHVEAGL 120
Query: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQNSK 179
RSFDR MPEEINR+L DH S LFAPT AK NL REGI EN +FVVGNTIVDA LQN K
Sbjct: 121 RSFDRNMPEEINRVLTDHISSYLFAPTEIAKNNLLREGIEENKIFVVGNTIVDATLQNLK 180
Query: 180 IAEKKSKILSELG--LEPKSYILVTAHRKENVDNKDRLKKLV----DILTSLPMQVVYPV 233
IAEK + + + Y L+T HR ENVDNK+RLK +V +I+ +++ +
Sbjct: 181 IAEKNENVRAFFNSVVIDDDYFLLTLHRAENVDNKERLKNIVEGIFEIIEIYDKAIIFSI 240
Query: 234 HPRAEKRLKEFGLWDRLKSS-GVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNV 292
HPR +KRLKEF L+D+LKS+ + +++P+GYL+FL LEKNA +++TDSGG+QEEA IL V
Sbjct: 241 HPRTKKRLKEFNLFDKLKSNKKIKIIEPVGYLEFLMLEKNAELILTDSGGVQEEACILKV 300
Query: 293 PCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSG 352
PC+TLR NTERPETV+ G NILVG K+ ++ V E + + KNPFG+G+SG
Sbjct: 301 PCITLRDNTERPETVEVGANILVGDNKEKLIKAV------EIMLNKKRNWKNPFGNGKSG 354
Query: 353 ERIVSIL 359
ERIV IL
Sbjct: 355 ERIVRIL 361
>pir||F69211 UDP-N-acetylglucosamine 2-epimerase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621927|gb|AAB85335.1| (AE000860)
UDP-N-acetylglucosamine 2-epimerase [Methanobacterium
thermoautotrophicum]
Length = 441
Score = 391 bits (994), Expect = e-108
Identities = 203/374 (54%), Positives = 268/374 (71%), Gaps = 4/374 (1%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
M+ AII GTRPEIIK++PVI K ++ LIHTGQHYD+EMS F +LELP +++
Sbjct: 4 MKIAIILGTRPEIIKMAPVIDEIRKRGMEFSLIHTGQHYDHEMSDQFFIDLELPAPHHNI 63
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
VGSG+ T + +E+VL+ E PD+ +VQGDTN VLAGALA+VKL IPV HVEAGL
Sbjct: 64 GVGSGSHGAMTAEMLRGLEEVLLREEPDIVMVQGDTNAVLAGALAAVKLHIPVGHVEAGL 123
Query: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAVLQNSK 179
RSFDRTMPEEINR++AD S++ + PT E+ NL EG+ E + V GNT+VDA L+N +
Sbjct: 124 RSFDRTMPEEINRMVADVCSKLYYVPTEESAINLLMEGVDPEMILVTGNTVVDACLRNIE 183
Query: 180 IAEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL-PMQVVYPVHPRAE 238
IA +KS ILSE E + +T HR ENVDN +RL ++D + L ++V+PVHPR
Sbjct: 184 IASRKSDILSEFS-EDDRIVALTLHRAENVDNPERLGSIIDAILELEEFRIVFPVHPRTR 242
Query: 239 KRLKEFGLWDRLKSSG-VMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTL 297
K L+ FGL+ L+ + V L+KP+GYLDFL L N+FIV+TDSGG+QEEAI NVPCLTL
Sbjct: 243 KNLERFGLYRMLQDAAHVTLMKPMGYLDFLLLLSNSFIVLTDSGGLQEEAITFNVPCLTL 302
Query: 298 RYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVS 357
RYNTERPETV+AGGNILVG ++++ ++L+ED F +RM A+NP+GDG + ERI+
Sbjct: 303 RYNTERPETVEAGGNILVGADREMITGTARRLLEDPDFRRRMMEAENPYGDGHASERIIE 362
Query: 358 ILMTLWESGRLKVK 371
+ L G+L ++
Sbjct: 363 ETLRLHREGKLAME 376
>pir||F72355 lipopolysaccharide biosynthesis protein - Thermotoga maritima
(strain MSB8) >gi|4981130|gb|AAD35695.1|AE001735_8
(AE001735) lipopolysaccharide biosynthesis protein
[Thermotoga maritima]
Length = 374
Score = 275 bits (697), Expect = 4e-73
Identities = 157/370 (42%), Positives = 232/370 (62%), Gaps = 17/370 (4%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
+R + G RP+IIK + + R F + I+ IL+H+GQHYDY MSS+F E LE+ + Y+L
Sbjct: 16 LRVLSLVGARPQIIKEAMLHREFKEKGIEEILVHSGQHYDYNMSSVFFEILEIRQPHYNL 75
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
VGSGT E TG MI+ EKVL++E PD+ +V GDTNT L+GAL + KL IPVAHVEAGL
Sbjct: 76 NVGSGTHGEMTGKIMIEFEKVLLSEKPDLVLVYGDTNTTLSGALVAAKLKIPVAHVEAGL 135
Query: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI 180
R + MPEEINRI+ D S++LF P+ A +NLEREGI E V+ VG+ + D L K+
Sbjct: 136 RQHPKDMPEEINRIVTDRVSQLLFCPSKLAVRNLEREGITEGVYFVGDVMYDLFL---KM 192
Query: 181 AEK-KSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDIL--TSLPMQVVYPVHPRA 237
++ + + +LGL+ ++LVT HR NVD+ +L+K+++ L S +VV+P+HPR
Sbjct: 193 EDRFRYDVFEKLGLKENEFVLVTLHRDFNVDDPVKLRKILEQLKRVSREKKVVFPIHPRT 252
Query: 238 EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTL 297
+ R+KEFGL + L+ G++++ P+ YL+ + L K + V+TDSGG+Q+EA + +
Sbjct: 253 KNRVKEFGLENLLE--GMVVIDPVDYLNLMGLVKRCWKVVTDSGGLQKEAYFAGKRAIVV 310
Query: 298 RYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVS 357
+T E V+AG N L E + + ED + Y +GDG + +IV
Sbjct: 311 MPDTGWRELVEAGWNKLASEEN----LFDVTMEEDRSEY-----PSGLYGDGNAAGKIVE 361
Query: 358 ILMTLWESGR 367
++ + S R
Sbjct: 362 VIEEWFRSLR 371
>emb|CAA07668.1| (AJ007747) putative UDP-N-acetylglucosamine 2-epimerase [Bordetella
bronchiseptica]
Length = 362
Score = 269 bits (681), Expect = 3e-71
Identities = 153/358 (42%), Positives = 215/358 (59%), Gaps = 10/358 (2%)
Query: 6 IFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGS 64
+ G RP+ IK S V A ++ ++ +++HTGQH+D MS +F +EL + + L++
Sbjct: 8 VLGARPQFIKASVVSAAIAQHPELTEVVVHTGQHFDANMSDVFFDELGMQTPAHQLDIHG 67
Query: 65 GTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFD 124
G + TG ++ +E+V+ E PDV +V GDTN+ LAGALA+VKL IPVAHVEAGLRSF+
Sbjct: 68 GGHGDMTGRMLVALEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFN 127
Query: 125 RTMPEEINRILADHSSEVLFAPTLEAKKNLEREG-IRENVFVVGNTIVDAVLQNSKIAEK 183
MPEE+NRIL D S LF PT A ++L EG E V VG+ + D L +
Sbjct: 128 LRMPEEVNRILTDRISRWLFTPTDSATRHLAAEGQSGEKVVQVGDVMYDVALHHGARVTA 187
Query: 184 KSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL--PMQVVYPVHPRAEKRL 241
+ + L+ GL+P Y+L T HR EN D+ RL +V L +L QVV+P+HPR L
Sbjct: 188 EGRALAAHGLKPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLHPRTRGIL 247
Query: 242 KEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYNT 301
GL D L S+ V LL+P+GYLD ++LEK A ++ TDSGG+Q+EA +PC+TLR T
Sbjct: 248 ARLGLLDELAST-VTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDET 306
Query: 302 ERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSIL 359
E E V AG N L ++ V + ++D + P+GDG++ RIV L
Sbjct: 307 EWTELVDAGWNRLA---PPVSSAVVAQAVQDA--LREQPRDVQPYGDGQAARRIVDAL 359
>pir||S70675 bplD protein - Bordetella pertussis >gi|992974|emb|CAA62248.1|
(X90711) gene referred to as bplD in Mol. Microbiol.
19:37-52(1996) [Bordetella pertussis]
>gi|1589224|prf||2210367F bplD gene [Bordetella
pertussis]
Length = 362
Score = 268 bits (678), Expect = 7e-71
Identities = 153/358 (42%), Positives = 215/358 (59%), Gaps = 10/358 (2%)
Query: 6 IFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGS 64
+ G RP+ IK S V A ++ ++ +++HTGQH+D MS +F +EL + + L++
Sbjct: 8 VLGARPQFIKASVVSAAIAQHPELTEVVVHTGQHFDANMSDVFFDELGMQTPAHQLDIHG 67
Query: 65 GTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFD 124
G + TG ++ +E+V+ E PDV +V GDTN+ LAGALA+VKL IPVAHVEAGLRSF+
Sbjct: 68 GGHGDMTGRMLVALEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFN 127
Query: 125 RTMPEEINRILADHSSEVLFAPTLEAKKNLEREG-IRENVFVVGNTIVDAVLQNSKIAEK 183
MPEE+NRIL D S LF PT A ++L EG E V VG+ + D L +
Sbjct: 128 LRMPEEVNRILTDRISRWLFTPTDSATRHLAAEGQSGEKVVQVGDVMYDVALHHGARVTA 187
Query: 184 KSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL--PMQVVYPVHPRAEKRL 241
+ + L+ GL+P Y+L T HR EN D+ RL +V L +L QVV+P+HPR L
Sbjct: 188 EGRALAAHGLKPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLHPRTWGIL 247
Query: 242 KEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYNT 301
GL D L S+ V LL+P+GYLD ++LEK A ++ TDSGG+Q+EA +PC+TLR T
Sbjct: 248 ARLGLLDELAST-VTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDET 306
Query: 302 ERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSIL 359
E E V AG N L ++ V + ++D + P+GDG++ RIV L
Sbjct: 307 EWTELVDAGWNRLA---PPVSSAVVAQAVQDA--LREQPRDVQPYGDGQAARRIVDAL 359
>pir||C83253 probable UDP-N-acetylglucosamine 2-epimerase WbpI PA3148 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949262|gb|AAG06536.1|AE004738_10 (AE004738)
probable UDP-N-acetylglucosamine 2-epimerase WbpI
[Pseudomonas aeruginosa]
Length = 354
Score = 252 bits (636), Expect = 6e-66
Identities = 146/371 (39%), Positives = 215/371 (57%), Gaps = 26/371 (7%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKND-IQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ I G RP+ IK S V +A I+ + I++HTGQH+D MS IF E+L +P+ DY
Sbjct: 1 MKILTIIGARPQFIKASVVSKAIIEQQTLSEIIVHTGQHFDANMSEIFFEQLGIPKPDYQ 60
Query: 60 LEVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAG 119
L++ GT + TG +++IE V++ E P +V GDTN+ LAGALA+ KL +P+AH+EAG
Sbjct: 61 LDIHGGTHGQMTGRMLMEIEDVILKEKPHRVLVYGDTNSTLAGALAASKLHVPIAHIEAG 120
Query: 120 LRSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSK 179
LRSF+ MPEEINRIL D S++LF PT A NL+ EG + N V V+Q+S
Sbjct: 121 LRSFNMRMPEEINRILTDQVSDILFCPTRVAIDNLKNEGFERKAAKIVN--VGDVMQDSA 178
Query: 180 IAEKKSKILSELGLEPK-SYILVTAHRKENVDNKDRLKKLVDILTSLPMQ---VVYPVHP 235
+ + + S +GL + +IL T HR EN D+ RL +V+ L + + VV P+HP
Sbjct: 179 LFFAQ-RATSPIGLASQDGFILATLHRAENTDDPVRLTSIVEALNEIQINVAPVVLPLHP 237
Query: 236 RAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCL 295
R ++ GL V ++ P+GYL+ + L + + +V+TDSGG+Q+EA PC+
Sbjct: 238 RTRGVIERLGL-----KLEVQVIDPVGYLEMIWLLQRSGLVLTDSGGVQKEAFFFGKPCV 292
Query: 296 TLRYNTERPETVKAGGNILVGVEKDLALRYVK----KLIEDEAFYKRMASAKNPFGDGRS 351
T+R TE E V G N+LVG +D+ + + K I+D+ +G G++
Sbjct: 293 TMRDQTEWVELVTCGANVLVGAARDMIVESARTSLGKTIQDDG---------QLYGGGQA 343
Query: 352 GERIVSILMTL 362
RI L L
Sbjct: 344 SSRIAEYLAKL 354
>gb|AAC45863.1| (U50396) WbpI [Pseudomonas aeruginosa]
Length = 362
Score = 249 bits (629), Expect = 4e-65
Identities = 140/342 (40%), Positives = 206/342 (59%), Gaps = 17/342 (4%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKND-IQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ I G RP+ IK S V +A I+ + I++HTGQH+D MS IF E+L +P+ DY
Sbjct: 1 MKILTIIGARPQFIKASVVSKAIIEQQTLSEIIVHTGQHFDANMSEIFFEQLGIPKPDYQ 60
Query: 60 LEVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAG 119
L++ GT + TG +++IE V++ E P +V GDTN+ LAGALA+ KL +P+AH+EAG
Sbjct: 61 LDIHGGTHGQMTGRMLMEIEDVILKEKPHRVLVYGDTNSTLAGALAASKLHVPIAHIEAG 120
Query: 120 LRSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSK 179
LRSF+ MPEEINRIL D S++LF PT A NL+ EG + N V V+Q+S
Sbjct: 121 LRSFNMRMPEEINRILTDQVSDILFCPTRVAIDNLKNEGFERKAAKIVN--VGDVMQDSA 178
Query: 180 IAEKKSKILSELGLEPK-SYILVTAHRKENVDNKDRLKKLVDILTSLPMQ---VVYPVHP 235
+ + + S +GL + +IL T HR EN D+ RL +V+ L + + VV P+HP
Sbjct: 179 LFFAQ-RATSPIGLASQDGFILATLHRAENTDDPVRLTSIVEALNEIQINVAPVVLPLHP 237
Query: 236 RAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCL 295
R ++ GL V ++ P+GYL+ + L + + +V+TDSGG+Q+EA PC+
Sbjct: 238 RTRGVIERLGL-----KLEVQVIDPVGYLEMIWLLQRSGLVLTDSGGVQKEAFFFGKPCV 292
Query: 296 TLRYNTERPETVKAGGNILVGVEKDLALRYVK----KLIEDE 333
T+R TE E V G N+LVG +D+ + + K I+D+
Sbjct: 293 TMRDQTEWVELVTCGANVLVGAARDMIVESARTSLGKTIQDD 334
>gb|AAB49436.1| (U73374) Cap8G [Staphylococcus aureus]
Length = 374
Score = 234 bits (591), Expect = 1e-60
Identities = 141/362 (38%), Positives = 219/362 (59%), Gaps = 14/362 (3%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGSG 65
I GTRPEII+LS I+A IL+HTGQ+YDY ++ IF ++LEL + D++LE
Sbjct: 9 IVGTRPEIIRLSSTIKA-CDQYFNQILVHTGQNYDYTLNQIFFDDLELRQPDHYLEAVGS 67
Query: 66 TQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFDR 125
E G + K VL+ E PD ++ GDTN+ LA A+++ +L IPV H+EAG R FD+
Sbjct: 68 NLGETMGNIIAKTYDVLLREQPDALLILGDTNSCLA-AVSAKRLKIPVFHMEAGNRCFDQ 126
Query: 126 TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRE-NVFVVGNTIVDAVLQNSKIAEKK 184
+PEEINR + DH S+V T +++ L EG + N+FV G+ + + V++ +
Sbjct: 127 NVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGFNKANIFVTGSPMTE-VIEAHRDKINH 185
Query: 185 SKILSELGLEPKSYILVTAHRKENVDNKDRLKKLV----DILTSLPMQVVYPVHPRAEKR 240
S +L++LGLEP+ YILV+AHR+EN+DN+ K L+ DI M V+Y HPR+ K+
Sbjct: 186 SDVLNKLGLEPQQYILVSAHREENIDNEKNFKSLMNAINDIAKKYKMPVIYSTHPRSWKK 245
Query: 241 LKEFGL-WDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRY 299
++E +D L V LKP G+ D+ L+K+AF+V++DSG + EE+ IL P + +R
Sbjct: 246 IEESKFEFDPL----VKQLKPFGFFDYNALQKDAFVVLSDSGTLSEESSILKFPGVLIRT 301
Query: 300 NTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSIL 359
+TERPE + G I+ G+ + ++ V+ E + + M A + + D ++V I+
Sbjct: 302 STERPEVLDKGTVIVGGITYNNLIQSVELAREMQNNNEPMIDAID-YKDTNVSTKVVKII 360
Query: 360 MT 361
+
Sbjct: 361 QS 362
>gb|AAD52173.1|AF144879_12 (AF144879) unknown [Leptospira interrogans]
Length = 375
Score = 232 bits (585), Expect = 6e-60
Identities = 127/360 (35%), Positives = 217/360 (60%), Gaps = 8/360 (2%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGSG 65
I GTRPE+IK+S VI +N + IL+H+GQ+YDYE++ +F E+LE+ + D+ L
Sbjct: 7 IVGTRPELIKMSRVIAELDRN-FKHILVHSGQNYDYELNQVFFEDLEIRKPDHFLNAAGE 65
Query: 66 TQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFDR 125
+ A ++K ++V E PD ++ GDTNT LA +++ + IP+ H+EAG R FD+
Sbjct: 66 SAAATIAQVLLKADEVFEKEKPDALLLYGDTNTCLA-VISAKRRKIPIFHMEAGNRCFDQ 124
Query: 126 TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKIAEKKS 185
+PEE+NR + DH S++ T A++ L EGI+ + + +D VL+ K +KS
Sbjct: 125 RVPEELNRKVVDHLSDINLVLTEHARRYLLAEGIKPETIIKTGSHMDEVLKYYKAKIEKS 184
Query: 186 KILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL----PMQVVYPVHPRAEKRL 241
IL ++ LE + +V++HR+ENV+ + LKKL++ L ++ + V+ HPR KRL
Sbjct: 185 DILEKIKLEKNKFFIVSSHREENVNTVENLKKLLESLNAICEEYGLPVIVSTHPRTRKRL 244
Query: 242 KEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYNT 301
++F + + + LKP G+ D+++L+ +AF +++DSG I EEA +L++P +T+R
Sbjct: 245 EDFK--EVEMNPLITFLKPFGFFDYVQLQMSAFCILSDSGTITEEASLLDLPAVTIRNTH 302
Query: 302 ERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILMT 361
ERPE + G I+ G+ K+ L V+ +++ R + + G+ ++IVSI+ +
Sbjct: 303 ERPEGMDVGTLIMSGLSKERILESVRIVVDQYRAGIRHYRVVDDYSAGQVSKKIVSIVQS 362
>gb|AAC46090.1| (U81973) Cap5G [Staphylococcus aureus]
Length = 374
Score = 231 bits (583), Expect = 1e-59
Identities = 140/362 (38%), Positives = 218/362 (59%), Gaps = 14/362 (3%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGSG 65
I GTRPEII+LS I+A IL+HTGQ+YDY ++ IF ++LEL + D++LE
Sbjct: 9 IVGTRPEIIRLSSTIKA-CDQYFNQILVHTGQNYDYTLNQIFFDDLELRQPDHYLEAVGS 67
Query: 66 TQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFDR 125
E G + K VL+ E PD ++ GDTN+ LA A+++ +L IPV H+EAG R FD+
Sbjct: 68 NLGETMGNIIAKTYDVLLREQPDALLILGDTNSCLA-AVSAKRLKIPVFHMEAGNRCFDQ 126
Query: 126 TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRE-NVFVVGNTIVDAVLQNSKIAEKK 184
+PEEINR + DH S+V T +++ L EG + N+FV G+ + + V++ +
Sbjct: 127 NVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGFNKANIFVTGSPMTE-VIEAHRDKINH 185
Query: 185 SKILSELGLEPKSYILVTAHRKENVDNKDRLKKLV----DILTSLPMQVVYPVHPRAEKR 240
S +L++LGLE + YILV+AHR+EN+DN+ K L+ DI M V+Y HPR+ K+
Sbjct: 186 SDVLNKLGLESQQYILVSAHREENIDNEKNFKSLMNAINDIAKKYKMPVIYSTHPRSWKK 245
Query: 241 LKEFGL-WDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRY 299
++E +D L V LKP G+ D+ L+K+AF+V++DSG + EE+ IL P + +R
Sbjct: 246 IEESKFEFDPL----VKQLKPFGFFDYNALQKDAFVVLSDSGTLSEESSILKFPGVLIRT 301
Query: 300 NTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSIL 359
+TERPE + G I+ G+ + ++ V+ E + + M A + + D ++V I+
Sbjct: 302 STERPEVLDKGTVIVGGITYNNLIQSVELAREMQNNNEPMIDAID-YKDTNVSTKVVKII 360
Query: 360 MT 361
+
Sbjct: 361 QS 362
>gb|AAD12956.1| (AF078135) unknown [Leptospira borgpetersenii]
Length = 375
Score = 229 bits (579), Expect = 3e-59
Identities = 128/360 (35%), Positives = 214/360 (58%), Gaps = 8/360 (2%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGSG 65
I GTRPE IK+S VI +N + IL+H+GQ+YDYE++ +F E+LE+ + D+ L
Sbjct: 7 IVGTRPEFIKMSRVIAELDRN-FKHILVHSGQNYDYELNQVFFEDLEIRKPDHFLNAAGE 65
Query: 66 TQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFDR 125
+ A ++K ++V E PD ++ GDTNT LA +++ + IP+ H+EAG R FD+
Sbjct: 66 SAAATIAQVLLKADEVFEKEKPDALLLYGDTNTCLA-VISAKRRKIPIFHMEAGNRCFDQ 124
Query: 126 TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKIAEKKS 185
+PEE+NR + DH S++ T A++ L EGI+ + + +D VL+ K+ +KS
Sbjct: 125 RVPEELNRKVVDHLSDINLVLTEHARRYLLAEGIKPETIIKTGSHMDEVLKYYKVKIEKS 184
Query: 186 KILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL----PMQVVYPVHPRAEKRL 241
IL +L LE + +V+ HR+ENVD + LKKL++ L ++ + V+ HPR KRL
Sbjct: 185 DILEKLKLEKNKFFIVSFHREENVDTIENLKKLLESLNAICEEYGLPVIVSTHPRTRKRL 244
Query: 242 KEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYNT 301
++F + + + LKP G+ D+++L+ +AF +++DSG I EEA +L++P +T+R
Sbjct: 245 EDFK--EVEMNPLITFLKPFGFFDYVQLQMSAFCILSDSGTITEEASLLDLPAVTIRNTH 302
Query: 302 ERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILMT 361
ERPE + G I+ G K+ L V+ +++ R + + G+ ++IV I+ +
Sbjct: 303 ERPEGMDFGTLIMSGFSKERILESVRIVVDQYRDGIRHYRVVDDYSAGQVSKKIVFIVQS 362
>gb|AAF21032.1|AF209197_1 (AF209197) UDP-GlcNAc 2-epimerase [Staphylococcus aureus]
Length = 375
Score = 228 bits (576), Expect = 7e-59
Identities = 144/365 (39%), Positives = 215/365 (58%), Gaps = 25/365 (6%)
Query: 6 IFGTRPEIIKLSPVIRAFIKND-IQPILIHTGQHYDYEMSSIFLEELEL-PEIDYHLEVG 63
IFGTRPE IK++P+++A + ++PI++ T QH EM L E+ P+ D ++
Sbjct: 7 IFGTRPEAIKMAPLVKALEQEKMLEPIVVVTAQHR--EMLDSVLSTFEIKPKYDLNIMKS 64
Query: 64 SGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSF 123
T +E T ++ ++E+V+ E PD+ +V GDT T AG LA+ +P+ HVEAGLRS+
Sbjct: 65 GQTLSEITSKSITQLEQVIQLEKPDMVLVHGDTMTTFAGGLAAFYNQVPIGHVEAGLRSY 124
Query: 124 DR--TMPEEINRILADHSSEVLFAPTLEAKKNLEREG-IRENVFVVGNTIVDAVLQNSKI 180
D+ PEE+NR L +++ FAPT A +L EG E+V V GNT +DA ++ +
Sbjct: 125 DKYSPFPEEVNRQLVGVLADLHFAPTKNAASHLLSEGKYSESVVVTGNTAIDA-MKYTVD 183
Query: 181 AEKKSKILSELGLEPKSYILVTAHRKENVDNK-----DRLKKLVDILTSLPMQVVYPVHP 235
KS I+ + K +IL+TAHR+EN+ +++L+D T L + VYP+H
Sbjct: 184 DNYKSNIMDKY--HDKKFILMTAHRRENIGKPMENIFKAVRRLIDEYTDLAL--VYPMHK 239
Query: 236 RAEKR---LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNV 292
+ R K G DR++ L++PL +DF K ++ ++TDSGGIQEEA N
Sbjct: 240 NPKVREVAQKILGSHDRIE-----LIEPLDVVDFHNFAKKSYFILTDSGGIQEEAPSFNK 294
Query: 293 PCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSG 352
P L LR TERPE V+AG ++G K + K+LI+DE Y +M+ A NP+GDG +
Sbjct: 295 PVLVLRSVTERPEGVEAGTLKVIGTNKQNVYQAAKELIDDERLYHQMSEASNPYGDGFAS 354
Query: 353 ERIVS 357
ERIV+
Sbjct: 355 ERIVN 359
>pir||H71689 probable UDP-n-acetylglucosamine 2-epimerase (rffE) RP334 -
Rickettsia prowazekii >gi|3860894|emb|CAA14794.1|
(AJ235271) PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE
(rffE) [Rickettsia prowazekii]
Length = 376
Score = 228 bits (574), Expect = 1e-58
Identities = 130/326 (39%), Positives = 197/326 (59%), Gaps = 7/326 (2%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGSG 65
I GTRPE+IK+ VI F K IL+HTGQ+Y YE++ +F +++ + + DY LE+ S
Sbjct: 7 ILGTRPELIKMCLVISEFDKYT-NHILVHTGQNYAYELNHVFFDDMGIRKPDYFLEIASD 65
Query: 66 TQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFDR 125
A+ GI + K+++VL E PD + GDTN+ L+ A+A+ + IP+ H+EAG R FD+
Sbjct: 66 NTAKSIGIVIAKVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPIFHMEAGNRCFDQ 124
Query: 126 TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKIAEKKS 185
+PEEINR + DH S+V T A++ L EG + + + VL + KS
Sbjct: 125 RVPEEINRKIIDHISDVNITLTEHARRYLISEGFPPERILKSGSHMPEVLNHFMPKILKS 184
Query: 186 KILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSLPMQVVYPV----HPRAEKRL 241
IL +L L+ K Y L+++HR+ENVD K+ L+ L+ L L + YP+ HPR +KRL
Sbjct: 185 DILEKLLLKAKQYFLISSHREENVDVKNNLQDLLSSLQILIQEYNYPIIFSTHPRTKKRL 244
Query: 242 KEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYNT 301
K+ + L+ + L P + D++KL+ NAF +++DSG + EEA ILN+P L +R
Sbjct: 245 KDLECFQELEDK-IRFLPPFSFTDYVKLQINAFCILSDSGTLTEEASILNLPALNIREAH 303
Query: 302 ERPETVKAGGNILVGVEKDLALRYVK 327
ERPE + AG I+ G + + L+ VK
Sbjct: 304 ERPEGMDAGTLIMSGFKAERILQSVK 329
>pir||A72304 UDP-N-acetylglucosamine 2-epimerase - Thermotoga maritima (strain
MSB8) >gi|4981575|gb|AAD36111.1|AE001764_14 (AE001764)
UDP-N-acetylglucosamine 2-epimerase [Thermotoga
maritima]
Length = 378
Score = 220 bits (555), Expect = 2e-56
Identities = 137/370 (37%), Positives = 214/370 (57%), Gaps = 16/370 (4%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELEL-PEIDY 58
+R +FGTRPE IK++P+++ + +++ ++ T QH +M LE ++ P+ D
Sbjct: 2 IRVLSVFGTRPEAIKMAPLVKKLEEEQNVESLVCVTAQHR--QMLDQVLEVFDIKPDFDL 59
Query: 59 HLEVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEA 118
++ ++ T A+ + ++ PD+ +VQGDT T AGALA+ IPV HVEA
Sbjct: 60 NIMKERQNLSDITVNALSGLYDLIGELKPDIVLVQGDTTTTFAGALAAFYHRIPVGHVEA 119
Query: 119 GLRSFDR--TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQ 176
GLR+ DR PEEINR L S + FAPT ++NL +E + ++V GNT++DA+
Sbjct: 120 GLRTNDRYSPFPEEINRRLTGVLSTLHFAPTKRNRENLLKENVMGKIYVTGNTVIDALRY 179
Query: 177 NSKIAEK-KSKILSELGLEPKSYILVTAHRKENV----DNKDR-LKKLVDILTSLPMQVV 230
K + IL + YIL+T+HR+EN+ +N R ++++V+ + +V+
Sbjct: 180 TVKENHVFEDPILRNMDFSDGRYILLTSHRRENIGKPLENICRAVRRIVEGFEDV--KVI 237
Query: 231 YPVHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIIL 290
YPVH R F + + ++ V L+ P+ +D L ++++MTDSGGIQEEA L
Sbjct: 238 YPVHMNPAVREIVFPMLENVER--VFLIDPVNVIDMHNLMARSYLIMTDSGGIQEEAPAL 295
Query: 291 NVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGR 350
P + LR TERPE ++AG +L GVE++ KKL+ D Y++MA A NPFGDGR
Sbjct: 296 GKPVIVLRKETERPEAIEAGVAVLGGVEEERIFELAKKLLVDREEYEKMAKAVNPFGDGR 355
Query: 351 SGERIVSILM 360
+ ERIV ++
Sbjct: 356 ASERIVKAIL 365
>gb|AAC46099.1| (U81973) Cap5P [Staphylococcus aureus]
Length = 391
Score = 216 bits (544), Expect = 4e-55
Identities = 136/362 (37%), Positives = 215/362 (58%), Gaps = 21/362 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVG 63
+IFGTRPE IK++P+++ N + + ++ T QH D S + + +++ D ++
Sbjct: 16 VIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADH-DLNIMQD 74
Query: 64 SGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSF 123
T A T A+ K++ ++ E PD+ +V GDT T G+LA+ IPV HVEAGLR+
Sbjct: 75 QQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTH 134
Query: 124 DR--TMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAV---LQN 177
+ PEE+NR++ + +E+ FAPT+ A KNL E +E +F+ GNT++DA+ +QN
Sbjct: 135 QKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQN 194
Query: 178 SKIAEKKSKILSELGLEPKSYILVTAHRKENV-DNKDRLKKLVDILTSLPMQVV--YPVH 234
++ +K + K IL+TAHR+EN+ + ++ K V L VV YP+H
Sbjct: 195 DFVSTIINKH------KGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMH 248
Query: 235 PRAEKR-LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVP 293
+ R + E L R + + L++PL ++F +++V+TDSGGIQEEA P
Sbjct: 249 RNPKVRAIAEKYLSGRNR---IELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKP 305
Query: 294 CLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGE 353
L LR +TERPE V+AG + ++G + D +R VK+LIED+ Y+RM+ A NP+GDG++
Sbjct: 306 VLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASR 365
Query: 354 RI 355
RI
Sbjct: 366 RI 367
>gb|AAB66525.1| (AF004325) UDP-N-acetylglucosamine-2-epimerase [Streptococcus
pneumoniae]
Length = 361
Score = 215 bits (542), Expect = 6e-55
Identities = 145/371 (39%), Positives = 212/371 (57%), Gaps = 25/371 (6%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ ++FGTRPE IK+ P++ K D++ ++ TGQH EM S LE + + DY
Sbjct: 1 MKIMLVFGTRPEAIKMCPLVNELKKQADMETVVCVTGQHK--EMVSPVLELFGV-QPDYD 57
Query: 60 LEVGSGTQA--EQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVE 117
LE+ Q T + KI+ VL E PD+ +V GDT T A ALA+ L I V HVE
Sbjct: 58 LEIMKANQTLFSITTSILEKIKPVLEEEQPDIVLVHGDTTTTYAAALAAFYLGIKVGHVE 117
Query: 118 AGLRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVL 175
AGLR+++ PEE NR + FAPT AK+NL +EG R NV+V GNT++DA+
Sbjct: 118 AGLRTYNLQSPFPEEFNRQSTSIIANYHFAPTELAKENLTKEG-RNNVYVTGNTVIDAL- 175
Query: 176 QNSKIAEKKSKILSELGLEPKS-YILVTAHRKENVDN--KDRLKKLVDILTSLP-MQVVY 231
K +K +L L + IL+TAHR+EN+ K + + IL ++V+Y
Sbjct: 176 ---KTTVQKDYTHPDLDLNADNRLILLTAHRRENLGEPMKHMFRAVKRILNEYDDVKVIY 232
Query: 232 PVHPRA---EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAI 288
P+H E + FG +R++ +++PL LDF N+++++TDSGG+QEEA
Sbjct: 233 PIHKNPLVRETAAEIFGDIERIQ-----IIEPLDVLDFHNFMNNSYMILTDSGGVQEEAP 287
Query: 289 ILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGD 348
L P L +R TERPE V AG LVG +++ + K L++D YK+M+ A NP+G+
Sbjct: 288 SLGKPVLVMRDTTERPEGVAAGTLKLVGTDEETIYQNFKMLLDDSEEYKKMSQASNPYGN 347
Query: 349 GRSGERIVSIL 359
G + ++IV IL
Sbjct: 348 GDASKQIVRIL 358
>gb|AAD45267.1|AF147795_8 (AF147795) WbjD [Pseudomonas aeruginosa]
>gi|8118242|gb|AAF72956.1|AF236052_7 (AF236052) WbjD
[Pseudomonas aeruginosa]
Length = 376
Score = 215 bits (541), Expect = 9e-55
Identities = 128/363 (35%), Positives = 209/363 (57%), Gaps = 9/363 (2%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
++ + GTRPEII+LS V+ A + +L+HTGQ+YDYE++ IF ++L + + DY L
Sbjct: 4 LKVVTVVGTRPEIIRLSRVM-AKLDQYCDHVLVHTGQNYDYELNEIFFQDLGIRKPDYFL 62
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
+ AE G +I +++VL PD +V GDTN+ +A L + + IP H+EAG
Sbjct: 63 NAAGSSGAETIGNVIIAVDRVLGEIDPDALLVLGDTNSCMA-VLPAKRRKIPTFHMEAGN 121
Query: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI 180
R FD +PEEINR + DH+++V + A+ L REG+ ++ + + + VL++ +
Sbjct: 122 RCFDMRVPEEINRRIVDHTADVNLTYSTIARDYLLREGLSPDMVIKTGSPMFEVLEHYRD 181
Query: 181 AEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL----PMQVVYPVHPR 236
+ S IL LGL+ + + +V+AHR+EN+D+ KLV +L ++ + V+ HPR
Sbjct: 182 GIESSDILERLGLKTERFFVVSAHREENIDSDKNFLKLVSMLNAVAEKYSLPVIVSTHPR 241
Query: 237 AEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLT 296
+KR++ + G+ LLKPLG+ D+ KL+ A V++DSG I EE+ ILN P L
Sbjct: 242 TKKRIE---ATEAKFHEGIKLLKPLGFKDYNKLQITAKAVISDSGTISEESSILNFPALN 298
Query: 297 LRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIV 356
+R ERPE ++ ++VG++ D L+ ++ L +RM + E+IV
Sbjct: 299 IREAHERPEGMEEAVVMMVGLDSDRVLQALEVLEGQRRDAERMLRLVADYSMPNVSEKIV 358
Query: 357 SIL 359
I+
Sbjct: 359 RIV 361
>gb|AAB49445.1| (U73374) Cap8P [Staphylococcus aureus]
Length = 391
Score = 213 bits (538), Expect = 2e-54
Identities = 135/362 (37%), Positives = 215/362 (59%), Gaps = 21/362 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVG 63
+IFGTRPE IK++P+++ N + + ++ T QH D S + + +++ D ++
Sbjct: 16 VIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADH-DLNIMQD 74
Query: 64 SGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSF 123
T A T A+ K++ ++ E PD+ +V GDT T G+LA+ IPV HVEAGLR+
Sbjct: 75 QQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTH 134
Query: 124 DR--TMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAV---LQN 177
+ PEE+NR++ + +E+ FAPT+ A KNL E +E++F+ GNT++DA+ +QN
Sbjct: 135 QKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKESIFITGNTVIDALSTTVQN 194
Query: 178 SKIAEKKSKILSELGLEPKSYILVTAHRKENV-DNKDRLKKLVDILTSLPMQVV--YPVH 234
++ +K + K IL+TAHR+EN+ + ++ K V L VV YP+H
Sbjct: 195 DFVSTIINKH------KGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMH 248
Query: 235 PRAEKR-LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVP 293
+ R + E L R + + L++PL ++F +++V+TDSGGIQEEA P
Sbjct: 249 RNPKVRAIAEKYLSGRNR---IELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKP 305
Query: 294 CLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGE 353
L LR +TERPE V+AG + ++G + D +R VK+LI D+ Y+RM+ A NP+GDG++
Sbjct: 306 VLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIMDDEAYQRMSQANNPYGDGQASR 365
Query: 354 RI 355
RI
Sbjct: 366 RI 367
>gb|AAD19924.1| (AF105116) UDP-N-acetyl glucosamine-2-epimerase [Streptococcus
pneumoniae]
Length = 361
Score = 211 bits (532), Expect = 1e-53
Identities = 143/371 (38%), Positives = 211/371 (56%), Gaps = 25/371 (6%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ ++FGTRPE IK+ P++ K D++ ++ TGQH EM S LE + + DY
Sbjct: 1 MKIMLVFGTRPEAIKMCPLVNELKKQADMETVVCVTGQHK--EMVSPVLELFGV-QPDYD 57
Query: 60 LEVGSGTQA--EQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVE 117
LE+ Q T + KI+ VL E PD+ +V GDT T A ALA+ L I V HVE
Sbjct: 58 LEIMKANQTLFSITTSILEKIKPVLEEEQPDIVLVHGDTTTTYAAALAAFYLGIKVGHVE 117
Query: 118 AGLRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVL 175
AGLR+++ PEE NR + FAPT AK+NL +EG RENV+V GNT++DA+
Sbjct: 118 AGLRTYNLQSPFPEEFNRQSTSIIANYHFAPTELAKENLLKEG-RENVYVTGNTVIDALT 176
Query: 176 QNSKIAEKKSKILSELGLEPKS-YILVTAHRKENVDN--KDRLKKLVDILTSLP-MQVVY 231
+ K +L L + IL+TAHR+EN+ K + + +L ++V+Y
Sbjct: 177 TTVQ----KDYTHPDLDLNVNTRLILLTAHRRENLGEPMKHMFRAVKRVLNEYDDVKVIY 232
Query: 232 PVHPRA---EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAI 288
P+H E + FG +R++ +++PL LDF ++++++TDSGG+QEEA
Sbjct: 233 PIHKNPLVRETATEIFGDTERIQ-----IIEPLDVLDFHNFMNHSYMILTDSGGVQEEAP 287
Query: 289 ILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGD 348
L P L +R TERPE V AG LVG +++ + K L++D YK+M+ A NP+G
Sbjct: 288 SLGKPVLVMRDTTERPEGVAAGTLKLVGTDEETIYQNFKMLLDDSEEYKKMSQASNPYGK 347
Query: 349 GRSGERIVSIL 359
G + ++IV IL
Sbjct: 348 GDASKQIVHIL 358
>gb|AAF08249.1|AF170495_10 (AF170495) UDP-N-acetylmannosamine dehydrogenase [Pasteurella
haemolytica]
Length = 372
Score = 211 bits (531), Expect = 1e-53
Identities = 142/377 (37%), Positives = 212/377 (55%), Gaps = 23/377 (6%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
MR I+FGTRPE IK++P++ F K+ + + T QH +M LE E+ DY L
Sbjct: 1 MRYLIVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHR--QMLDQVLELFEITP-DYDL 57
Query: 61 EVGSGTQAEQTGIAMI--KIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEA 118
++ S Q T + I KI+ V+ P V GDT T LA +LA+ I +AH+EA
Sbjct: 58 DIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASSLAAYYNQIDIAHIEA 117
Query: 119 GLRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVL 175
GLR+ + PEE NR L ++ FAPT KKNL E I E ++V GNT++DA+
Sbjct: 118 GLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENIAEGTIYVTGNTVIDALF 177
Query: 176 QNSKIAEKKSKILSELG-----LEPKSYILVTAHRKENVDNK-DRLKKLVDILTS--LPM 227
K ++ +LS L ++ K IL+T HR+EN N + + K V L S +
Sbjct: 178 LACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGNGFENICKAVSTLASDFPDV 237
Query: 228 QVVYPVH--PRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQE 285
Q +YPVH P + + L D+ S V L++P YL F+ L + +++++TDSGGIQE
Sbjct: 238 QFIYPVHLNPNVREPVNRL-LADK---SNVHLIEPCDYLSFVYLMRESYLILTDSGGIQE 293
Query: 286 EAIILNVPCLTLRYNTERPETVKAGG-NILVGVEKDLALRYVKKLIEDEAFYKRMASAKN 344
EA L P L +R TERPE V+AG + +G + ++ V +L+ D+A Y +M+ A N
Sbjct: 294 EAPSLGKPVLVMRDTTERPEAVEAGTVKLCLGTAQSEIIKQVTELLNDQAAYTKMSEAHN 353
Query: 345 PFGDGRSGERIVSILMT 361
P+GDG + ++I+S+ +
Sbjct: 354 PYGDGTAVKQILSVFQS 370
>gb|AAC78673.1| (AF094575) UDP-N-acetylglucosamine-2-epimerase Cps19aK
[Streptococcus pneumoniae]
Length = 363
Score = 210 bits (529), Expect = 2e-53
Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 21/365 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELEL-PEIDYHLEV 62
++FGTRPE IK+ P++ K+ D++ I+ TGQH EM S L+ + P+ D +
Sbjct: 7 LVFGTRPEAIKMCPLVNELKKHEDMETIVCVTGQHK--EMVSPVLDLFGVVPDYDLEIMK 64
Query: 63 GSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRS 122
+ T T + KI+ VL E PD+ +V GDT T A ALA+ L I V HVEAGLR+
Sbjct: 65 ANQTLFSITTSILEKIKPVLEKEQPDIVLVHGDTTTTYAAALAAFYLGIKVGHVEAGLRT 124
Query: 123 FD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI 180
++ PEE NR + FAPT AK+NL +EG RENV+V GNT++DA+ + +
Sbjct: 125 YNLQSPFPEEFNRQSTSIIATYHFAPTELAKENLLKEG-RENVYVTGNTVIDAL--TTTV 181
Query: 181 AEKKSKILSELGLEPKSYILVTAHRKENVDNKDR--LKKLVDILTSLP-MQVVYPVHPRA 237
E + +L + IL+TAHR+EN+ R + + +L ++V+YP+H
Sbjct: 182 QEDYTHTHLDLNANNR-LILLTAHRRENLGEPMRHMFRAVKRVLNEYEDVKVIYPIHKNP 240
Query: 238 ---EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPC 294
E + FG +R++ +++PL LDF +++++TDSGG+QEEA L P
Sbjct: 241 LVRETAAEIFGDTERIQ-----IIEPLDVLDFHNFMNQSYMILTDSGGVQEEAPSLGKPV 295
Query: 295 LTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGER 354
L +R TERPE V AG LVG +++ + K L++D YK+M+ A NP+G+G + ++
Sbjct: 296 LVMRDTTERPEGVAAGTLKLVGTDEETIYQNFKLLLDDSGEYKKMSQASNPYGNGDASQQ 355
Query: 355 IVSIL 359
IV IL
Sbjct: 356 IVQIL 360
>gb|AAD19912.1| (AF105113) UDP-N-acetyl glucosamine-2-epimerase [Streptococcus
pneumoniae]
Length = 362
Score = 210 bits (528), Expect = 3e-53
Identities = 138/365 (37%), Positives = 210/365 (56%), Gaps = 21/365 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELEL-PEIDYHLEV 62
++FGTRPE IK+ P++ K+ D++ I+ TGQH EM S L+ + P+ D +
Sbjct: 6 LVFGTRPEAIKMCPLVNELKKHEDMETIVCVTGQHK--EMVSPVLDLFGVVPDYDLEIMK 63
Query: 63 GSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRS 122
+ T T + KI+ VL E PD+ ++ GDT T A ALA+ L I V HVEAGLR+
Sbjct: 64 ANQTLFSITTSILEKIKPVLEKEQPDIVLIHGDTTTTYAAALAAFYLGIKVGHVEAGLRT 123
Query: 123 FD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKI 180
++ PEE NR + FAPT AK+NL +EG RENV+V GNT++DA+ + +
Sbjct: 124 YNLQSPFPEEFNRQSTSIIATYHFAPTELAKENLLKEG-RENVYVTGNTVIDAL--TTTV 180
Query: 181 AEKKSKILSELGLEPKSYILVTAHRKENVDNKDR--LKKLVDILTSLP-MQVVYPVHPRA 237
E + +L + IL+TAHR+EN+ R + + +L ++V+YP+H
Sbjct: 181 QEDYTHTHLDLNANNR-LILLTAHRRENLGEPMRHMFRAVKRVLNEYEDVKVIYPIHKNP 239
Query: 238 ---EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPC 294
E + FG +R++ +++PL LDF +++++TDSGG+QEEA L P
Sbjct: 240 LVRETAAEIFGDTERIQ-----IIEPLDVLDFHNFMNQSYMILTDSGGVQEEAPSLGKPV 294
Query: 295 LTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGER 354
L +R TERPE V AG LVG +++ + K L++D YK+M+ A NP+G+G + ++
Sbjct: 295 LVMRDTTERPEGVAAGTLKLVGTDEETIYQNFKLLLDDSGEYKKMSQASNPYGNGDASQQ 354
Query: 355 IVSIL 359
IV IL
Sbjct: 355 IVQIL 359
>gb|AAG26478.1|AF285774_18 (AF285774) putative epimerase [Bacteroides fragilis]
Length = 376
Score = 209 bits (527), Expect = 4e-53
Identities = 123/362 (33%), Positives = 216/362 (58%), Gaps = 12/362 (3%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGSG 65
I GTRPEIIKLS V+ A + + I++HTGQ++DYE++ IF +EL + + DY L+ +G
Sbjct: 7 IVGTRPEIIKLSRVM-AELDKYTEHIMVHTGQNFDYELNEIFFQELRIRKPDYFLDA-AG 64
Query: 66 TQAEQTGIAMIKIEKVLMNEV-PDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFD 124
A +T +I+ LM++V PD ++ GDTN+ ++ +++ + IP+ H+EAG R FD
Sbjct: 65 KNAAETIANVIRKSDELMDQVKPDALLLYGDTNSCIS-VISAKRRKIPIFHMEAGNRCFD 123
Query: 125 RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIR-ENVFVVGNTIVDAVLQNSKIAEK 183
+ +PEEINR + DH S++ + A+K L EG+R E V +G+ + + ++ + K +
Sbjct: 124 QRVPEEINRKIVDHLSDINMPLSEHARKYLLAEGLRPETVIKIGSPMTEVLIYH-KAEIE 182
Query: 184 KSKILSELGLEPKSYILVTAHRKENVDNK----DRLKKLVDILTSLPMQVVYPVHPRAEK 239
++ +L + GL+ Y +V+ HR+ENVD++ D L L I+ +V+ HPR K
Sbjct: 183 ENDVLEKEGLKKGDYFIVSTHREENVDSEKNFSDLLSSLNAIVDKYHKKVIVSTHPRTRK 242
Query: 240 RLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRY 299
+L+ G + + + +KP G+++++KL++NAF V++DSG I EE+ IL+ P +T+R
Sbjct: 243 KLESIGFIN--SNPMIEFMKPFGFMEYIKLQQNAFCVISDSGTITEESSILHFPAITIRQ 300
Query: 300 NTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSIL 359
ERPE + G I+ G+ D L ++ + A + + + +++V I+
Sbjct: 301 AHERPEGMDEGTLIMTGLNSDRILESIEIVTSQYAEGADVIHSIPDYASDNVSKKVVRII 360
Query: 360 MT 361
++
Sbjct: 361 LS 362
>sp|P27828|WECB_ECOLI UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (UDP-GLCNAC-2-EPIMERASE)
(BACTERIOPHAGE N4 ADSORPTION PROTEIN C)
>gi|538731|pir||A49350 bacteriophage N4 adsorption
protein nfrC - Escherichia coli
>gi|304919|gb|AAC36847.1| (L18799) cytoplasmic protein
[Escherichia coli]
Length = 376
Score = 208 bits (525), Expect = 6e-53
Identities = 139/372 (37%), Positives = 209/372 (55%), Gaps = 16/372 (4%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDI-QPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ +FGTRPE IK++P++ A K+ + + T QH + + L + +P+ D +
Sbjct: 1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSI-VPDYDLN 59
Query: 60 LEVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAG 119
+ E T + ++ +L PDV +V GDT T LA +LA+ IPV HVEAG
Sbjct: 60 IMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAG 119
Query: 120 LRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQ 176
LR+ D PEE NR L H + F+PT +++NL RE + ++ +F+ GNT++DA+L
Sbjct: 120 LRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLW 179
Query: 177 NSKIAEKKSKILSELG-----LEP-KSYILVTAHRKENVDN--KDRLKKLVDILTS-LPM 227
K+ SEL ++P K ILVT HR+E+ ++ L DI T+ +
Sbjct: 180 VRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDI 239
Query: 228 QVVYPVHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEA 287
Q+VYPVH R + +K+ V+L+ P YL F+ L +A++++TDSGGIQEEA
Sbjct: 240 QIVYPVHLNPNVREPVNRILGHVKN--VILIDPQEYLPFVWLMNHAWLILTDSGGIQEEA 297
Query: 288 IILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFG 347
L P L +R TERPE V AG LVG +K + V +L++DE Y+ M+ A NP+G
Sbjct: 298 PSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYG 357
Query: 348 DGRSGERIVSIL 359
DG++ RI+ L
Sbjct: 358 DGQACSRILEAL 369
>gb|AAF68965.1|AF245690_2 (AF245690) putative N-acetyl-glucosamine 2-epimerase [Streptomyces
verticillus]
Length = 408
Score = 206 bits (518), Expect = 4e-52
Identities = 141/370 (38%), Positives = 206/370 (55%), Gaps = 19/370 (5%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDI-QPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
+R ++ GTRPE IKL+PV RA + + +P+++ TGQH EM L+ L++P
Sbjct: 10 VRAMLVLGTRPEAIKLAPVARAMAASPLFEPLVVTTGQHR--EMLHQMLDLLQVPGRT-E 66
Query: 60 LEVGSGTQ--AEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVE 117
L+V Q + TG + + +V+ + PDV +VQGDT T L GALA+ +PVAHVE
Sbjct: 67 LDVMRDRQELSTLTGRLVDGLGEVVRDLRPDVVLVQGDTTTALTGALAAFYEHVPVAHVE 126
Query: 118 AGLRS--FDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAV 174
AGLR+ D PEE+NR L + FAPT A +L EG+ ++ VF GNT++D +
Sbjct: 127 AGLRTGVLDNPFPEELNRRLIGRVARWHFAPTPRAAGHLRAEGVPDSEVFTTGNTVIDNL 186
Query: 175 LQNSKIAEKKSKILSELGLEPKSYILVTAHRKENVDNKDR-----LKKLVDILTSLPMQV 229
L + +S+ +L+T HR+EN + R +++L D +++
Sbjct: 187 LWVLERGTGQSQFTDGTATGGLRRVLLTLHRRENQGDTMRGMGRAIRRLAD---RGDVEI 243
Query: 230 VYPVHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAII 289
+ P+H +++ L + V +++PLGYLDF +V+TDSGGIQEEA
Sbjct: 244 LLPLHK--SPAVRDALLPELTGHPRVRVVEPLGYLDFSGTLAACDLVLTDSGGIQEEAPS 301
Query: 290 LNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDG 349
L P L LR TERPE V+ G LVG D L ++L++D Y RMA A NPFGDG
Sbjct: 302 LGKPALVLRTTTERPEAVETGAARLVGTVPDAILAATERLLDDPGEYARMAEAGNPFGDG 361
Query: 350 RSGERIVSIL 359
+ ERI++ L
Sbjct: 362 HATERIIAQL 371
>sp|P39131|YVYH_BACSU PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE
(UDP-GLCNAC-2-EPIMERASE) >gi|7448298|pir||D70049
UDP-N-acetylglucosamine 2-epimerase homolog yvyH -
Bacillus subtilis >gi|405622|emb|CAA80240.1| (Z22516)
unknown [Bacillus subtilis] >gi|2636092|emb|CAB15583.1|
(Z99122) similar to UDP-N-acetylglucosamine 2-epimerase
[Bacillus subtilis]
Length = 380
Score = 205 bits (515), Expect = 1e-51
Identities = 137/367 (37%), Positives = 212/367 (57%), Gaps = 23/367 (6%)
Query: 6 IFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELEL-PEIDYHLEVG 63
+FGTRPE IK++P++ K +I + T QH +M L+ + P+ D ++
Sbjct: 9 VFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHR--QMLDQVLDAFHIKPDFDLNIMKE 66
Query: 64 SGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSF 123
T AE T A+++++++ + PD+ +V GDT T AG+LA+ I V HVEAGLR+
Sbjct: 67 RQTLAEITSNALVRLDELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTG 126
Query: 124 DR--TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIR-ENVFVVGNTIVDAVLQNSKI 180
++ PEE+NR + +++ FAPT +AK NL +E + +++FV GNT +DA+ N+ +
Sbjct: 127 NKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLKENKKADSIFVTGNTAIDAL--NTTV 184
Query: 181 AEKKSK-ILSELGLEPKSYILVTAHRKENVDN--KDRLKKLVDILTSLP-MQVVYPVHPR 236
+ S +L ++G + IL+TAHR+EN+ ++ K + I+ +QVVYPVH
Sbjct: 185 RDGYSHPVLDQVGED--KMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHLN 242
Query: 237 A---EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVP 293
E K FG DR V L++PL +DF + ++TDSGG+QEEA L P
Sbjct: 243 PVVREAAHKHFGDSDR-----VHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKP 297
Query: 294 CLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGE 353
L LR TERPE V+AG L G +++ + K+L+ D YK+M+ A NP+GDG +
Sbjct: 298 VLVLRDTTERPEGVEAGTLKLAGTDEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASR 357
Query: 354 RIVSILM 360
RIV L+
Sbjct: 358 RIVEELL 364
>pir||E65182 bacteriophage N4 adsorption protein - Escherichia coli
>gi|2367283|gb|AAC76791.1| (AE000455) UDP-N-acetyl
glucosamine -2-epimerase; synthesis of enterobacterial
common antigen (ECA) [Escherichia coli K12]
Length = 389
Score = 204 bits (514), Expect = 1e-51
Identities = 139/367 (37%), Positives = 207/367 (55%), Gaps = 17/367 (4%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDI-QPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGS 64
+FGTRPE IK++P++ A K+ + + T QH + + L + +P+ D ++
Sbjct: 20 VFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSI-VPDYDLNIMQPG 78
Query: 65 GTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFD 124
E T + ++ +L PDV +V GDT T LA +LA+ IPV HVEAGLR+ D
Sbjct: 79 QGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 138
Query: 125 --RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQNSKIA 181
PEE NR L H + F+PT +++NL RE + ++ +F+ GNT++DA+L
Sbjct: 139 LYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQV 198
Query: 182 EKKSKILSELG-----LEP-KSYILVTAHRKENVDN--KDRLKKLVDILTS-LPMQVVYP 232
K LSEL ++P K ILVT HR+E+ ++ L DI T+ +Q+VYP
Sbjct: 199 MSSDK-LSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYP 257
Query: 233 VHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNV 292
VH R + +K+ V+L+ P YL F+ L +A++++TDSGGIQEEA L
Sbjct: 258 VHLNPNVREPVNRILGHVKN--VILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGK 315
Query: 293 PCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSG 352
P L +R TERPE V AG LVG +K + V +L++DE Y+ M+ A NP+GDG++
Sbjct: 316 PVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQAC 375
Query: 353 ERIVSIL 359
RI+ L
Sbjct: 376 SRILEAL 382
>gb|AAA67586.1| (M87049) o389 [Escherichia coli]
Length = 389
Score = 203 bits (512), Expect = 2e-51
Identities = 138/367 (37%), Positives = 204/367 (54%), Gaps = 17/367 (4%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDI-QPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGS 64
+FGTRPE IK++P++ A K+ + + T QH + + L + +P+ D ++
Sbjct: 20 VFGTRPEXIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSI-VPDYDLNIMQPG 78
Query: 65 GTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFD 124
E T + ++ +L PDV +V GDT T LA +LA+ IPV HVEAGLR+ D
Sbjct: 79 QGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 138
Query: 125 --RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQNSKIA 181
PEE NR L H + F+PT +++NL RE + ++ +F+ GNT++DA+L
Sbjct: 139 LYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQV 198
Query: 182 EKKSKILSELGLE------PKSYILVTAHRKENVDN--KDRLKKLVDILTS-LPMQVVYP 232
K LSEL K ILVT HR+E+ ++ L DI T+ +Q+VYP
Sbjct: 199 MSSDK-LSELAANYPFIXPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYP 257
Query: 233 VHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNV 292
VH R + +K+ V+L+ P YL F+ L +A++++TDSGGIQEEA L
Sbjct: 258 VHLNPNVREPVNRILGHVKN--VILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGK 315
Query: 293 PCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSG 352
P L +R TERPE V AG LVG +K + V +L++DE Y+ M+ A NP+GDG++
Sbjct: 316 PVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQAC 375
Query: 353 ERIVSIL 359
RI+ L
Sbjct: 376 SRILEAL 382
>pir||S30680 hypothetical protein o389 - Escherichia coli
Length = 389
Score = 203 bits (512), Expect = 2e-51
Identities = 138/367 (37%), Positives = 204/367 (54%), Gaps = 17/367 (4%)
Query: 6 IFGTRPEIIKLSPVIRAFIKNDI-QPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGS 64
+FGTRPE IK++P++ A K+ + + T QH + + L + +P+ D ++
Sbjct: 20 VFGTRPEXIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSI-VPDYDLNIMQPG 78
Query: 65 GTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFD 124
E T + ++ +L PDV +V GDT T LA +LA+ IPV HVEAGLR+ D
Sbjct: 79 QGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 138
Query: 125 --RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQNSKIA 181
PEE NR L H + F+PT +++NL RE + ++ +F+ GNT++DA+L
Sbjct: 139 LYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQV 198
Query: 182 EKKSKILSELGLE------PKSYILVTAHRKENVDN--KDRLKKLVDILTS-LPMQVVYP 232
K LSEL K ILVT HR+E+ ++ L DI T+ +Q+VYP
Sbjct: 199 MSSDK-LSELAANYPFIXPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYP 257
Query: 233 VHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNV 292
VH R + +K+ V+L+ P YL F+ L +A++++TDSGGIQEEA L
Sbjct: 258 VHLNPNVREPVNRILGHVKN--VILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGK 315
Query: 293 PCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSG 352
P L +R TERPE V AG LVG +K + V +L++DE Y+ M+ A NP+GDG++
Sbjct: 316 PVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQAC 375
Query: 353 ERIVSIL 359
RI+ L
Sbjct: 376 SRILEAL 382
>gb|AAF67263.1|AF169324_1 (AF169324) BcbA [Pasteurella multocida]
Length = 374
Score = 203 bits (510), Expect = 4e-51
Identities = 137/369 (37%), Positives = 205/369 (55%), Gaps = 22/369 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEI--DYHLEV 62
++FGTRPE IK++P++ KN++ + T QH + + + LEL I DY L++
Sbjct: 10 VVFGTRPEAIKMAPLVEGLKKNNLNFRICVTAQHRE-----MLDQVLELFNIIPDYDLDI 64
Query: 63 GSGTQAEQTGIAMI--KIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
+ TQ T + I KI+ V+ + P+V V GDT T LA +LA+ I +AH+EAGL
Sbjct: 65 MNQTQTLSTVTSSILEKIQPVIDDYKPNVIFVHGDTATTLAASLAAYYNQIDIAHIEAGL 124
Query: 121 RSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQN 177
R+ + PEE NR L ++ F PT K+NL RE I + +++ GNT++DA+
Sbjct: 125 RTNNIYSPWPEEGNRKLTAALAKYHFTPTQATKENLLRENIDPSKIYITGNTVIDALFLV 184
Query: 178 SKIAEKKSKILSELGLE-----PKSYILVTAHRKENV-DNKDRLKKLVDILTSL--PMQV 229
+K E +L + K IL+T HR+EN D + + + L L +Q
Sbjct: 185 NKKIENNLTLLQKYKRNFSDFLGKKVILITGHRRENFGDGFENICAAISSLAELHPDVQF 244
Query: 230 VYPVHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAII 289
VYPVH R L + + L++PL Y F+ L KNA++++TDSGGIQEEA
Sbjct: 245 VYPVHLNPNVREPVNRLLKN--KNNIHLIQPLDYFSFIFLMKNAYLILTDSGGIQEEAPS 302
Query: 290 LNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDG 349
L P L +R TER E V+A LVG ++L + V +L+ D Y +M+ A NP+GDG
Sbjct: 303 LGKPVLVMRKTTERLEAVQAETVKLVGTTQELIIDSVNELLTDIEAYNKMSKAHNPYGDG 362
Query: 350 RSGERIVSI 358
R+ ERI+++
Sbjct: 363 RAVERILNV 371
>gb|AAC44968.1| (U09239) UDP-N-acetylglucosamine-2-epimerase [Streptococcus
pneumoniae]
Length = 362
Score = 201 bits (505), Expect = 1e-50
Identities = 138/367 (37%), Positives = 208/367 (56%), Gaps = 25/367 (6%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVG 63
++FGTRPE IK+ ++ K D++ ++ TGQH EM S L+ + + DY LE+
Sbjct: 6 LVFGTRPEAIKMCSLVNELRKQEDMKTVVCVTGQHK--EMVSPVLDLFGV-QPDYDLEIM 62
Query: 64 SGTQA--EQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLR 121
Q T + KI+ VL E PD+ +V GDT T A ALA+ L I V HVEAGLR
Sbjct: 63 KANQNLFSITISILEKIKPVLEKEQPDIVLVHGDTTTTYAAALAAFYLGIKVGHVEAGLR 122
Query: 122 SFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSK 179
+++ PEE NR + FAPT AK+NL +EG R N++V GNT++DA+ +
Sbjct: 123 TYNLQSPFPEEFNRQSTSIIANYHFAPTELAKENLIKEG-RNNIYVTGNTVIDALTTTVQ 181
Query: 180 IAEKKSKILSELGL-EPKSYILVTAHRKENVDNKDR--LKKLVDILTSLP-MQVVYPVHP 235
K +L L + IL+TAHR+EN+ R + + +L ++V+YP+H
Sbjct: 182 ----KDYTHPDLDLNDGNRLILLTAHRRENLGEPMRHMFRAVKRVLNEYDDVKVIYPIHK 237
Query: 236 RA---EKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNV 292
E + FG +R++ +++PL LDF ++++++TDSGG+QEEA L
Sbjct: 238 NPLVRETATEIFGDTERIQ-----IIEPLDVLDFHNFMNHSYMILTDSGGVQEEAPSLGK 292
Query: 293 PCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSG 352
P L +R TERPE V AG LVG +++ + K L++D YK+M+ A NP+G+G +
Sbjct: 293 PVLVMRDTTERPEGVAAGTLKLVGTDEETIYQNFKMLLDDPEEYKKMSRASNPYGNGDAS 352
Query: 353 ERIVSIL 359
++IV IL
Sbjct: 353 KQIVRIL 359
>pir||T44828 probable UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.-)
[imported] - Acinetobacter lwoffii
>gi|6009989|emb|CAB57196.1| (AJ243431) putative
UDP-N-acetylglucosamine 2-epimerase [Acinetobacter
lwoffii]
Length = 376
Score = 200 bits (503), Expect = 2e-50
Identities = 134/371 (36%), Positives = 194/371 (52%), Gaps = 21/371 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAF--IKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEV 62
++FGTRPE IK++P+ D + + TGQH + L EL P+ D +L
Sbjct: 6 LVFGTRPEAIKMAPLALKLQQFNEDFETKVCVTGQHRQMLDQVLSLFELT-PDFDLNLMK 64
Query: 63 GSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRS 122
T ++ T + +E+V +PD+ +V GDT T A +LA I + HVEAGLR+
Sbjct: 65 PGQTLSDVTSGVLKGLEQVFAEWMPDLILVHGDTATTFAASLAGYYHKIKIGHVEAGLRT 124
Query: 123 FD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIR-ENVFVVGNTIVDAVLQNSK 179
D PEE NR L + FAPT + NL +E + E V + GNT++DA+LQ
Sbjct: 125 GDLYSPWPEEANRQLTGVLANFHFAPTRSSYNNLIKENVNPETVVITGNTVIDALLQVKT 184
Query: 180 IAEKKSKILSELGLE------PKSYILVTAHRKENVDNK--DRLKKLVDILTSLP-MQVV 230
E++ +++ + E K ILVT HR+EN + L +I P +Q+V
Sbjct: 185 KVEQEQQLIQKFEQEFSFIDKSKKLILVTGHRRENFGQGFLNICTALANIAKKYPDIQIV 244
Query: 231 YPVH--PRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAI 288
YPVH P ++ + E V L+ P YL F+ L +++++TDSGGIQEEA
Sbjct: 245 YPVHLNPNVQQPVNEL----LANIDNVFLIAPQDYLPFVYLMNRSYLILTDSGGIQEEAP 300
Query: 289 ILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGD 348
L P L +R TERPE V AG LVG + + V +L+E+ Y MA A NP+GD
Sbjct: 301 SLGKPVLVMRDTTERPEAVDAGTVRLVGTDVNAIQSAVSELLENTTIYASMAEAHNPYGD 360
Query: 349 GRSGERIVSIL 359
G + +RI+ L
Sbjct: 361 GTACQRIIDFL 371
>gb|AAD56736.1|AF125164_9 (AF125164) UDP-GlcNAc 2-epimerase [Bacteroides fragilis]
Length = 384
Score = 199 bits (501), Expect = 4e-50
Identities = 133/383 (34%), Positives = 211/383 (54%), Gaps = 32/383 (8%)
Query: 5 IIFGTRPEIIKLSPVIRAFIK--NDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEV 62
++FGTRPE IK++P+++ F K + Q I+ TGQH + + L + P D ++
Sbjct: 6 LVFGTRPEAIKMAPLVKEFQKYPKEFQTIVCVTGQHREMLDQVLHLFHIR-PNYDLNIMK 64
Query: 63 GSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRS 122
+ T +I + VL PD+ +V GDT T A AL++ IPV H+EAGLR+
Sbjct: 65 QGQDLYDVTARVLIGMRDVLAEVRPDLLLVHGDTTTSTAAALSAFYQQIPVGHIEAGLRT 124
Query: 123 FD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAV----- 174
+ PEE+NR + + F+PTL +++NL EG++ + + V GNT++D++
Sbjct: 125 HNVYSPWPEEMNRQVTGRIATYHFSPTLLSRQNLLNEGVKGDFIIVTGNTVIDSIYMVVD 184
Query: 175 -LQNSKIAEKKSK-ILSELGLE------PKSYILVTAHRKENVDNKDRLKKLVDILTSLP 226
+++ K+ E + + +LS G + K +L+T HR+EN D + + +L
Sbjct: 185 RIRHDKLLEVQLRNVLSTSGYDVKRLSNDKKLVLITGHRRENFG--DGFISMCQAIKALS 242
Query: 227 -----MQVVYPVH--PRAEKRLKE-FGLWDRLKS-SGVMLLKPLGYLDFLKLEKNAFIVM 277
+ VYP+H P K + E FG D L + + ++PL YL F+ L + + IV+
Sbjct: 243 EKYPNVDFVYPMHLNPNVRKPIHEVFG--DELSDLNNLFFIEPLEYLSFVYLMEKSIIVL 300
Query: 278 TDSGGIQEEAIILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYK 337
TDSGGIQEEA L P L +R TERPE ++AG LVG D + V L++D +Y
Sbjct: 301 TDSGGIQEEAPGLGKPVLVMRDTTERPEALEAGTVKLVGTNYDKIVNEVSALLDDSDYYN 360
Query: 338 RMASAKNPFGDGRSGERIVSILM 360
M+ A NP+GDG++ +IV+ L+
Sbjct: 361 TMSKAVNPYGDGKACSKIVNFLL 383
>gb|AAF33467.1| (AF233324) 86% identity to with E. coli UDP-N-acetyl-D-glucosamine
2-epimerase (WECB) (SP:P27828) [Salmonella typhimurium
LT2]
Length = 376
Score = 194 bits (488), Expect = 1e-48
Identities = 132/372 (35%), Positives = 203/372 (54%), Gaps = 16/372 (4%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKND-IQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ +FGTRPE IK++P++ A K+ + + T QH + + L + +P+ D +
Sbjct: 1 MKVLTVFGTRPEAIKMAPLVHALEKDPHFEAKVCVTAQHREMLDQVLTLFSI-VPDYDLN 59
Query: 60 LEVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAG 119
+ E T + ++ +L + PDV +V GDT T +A +LA+ IPV HVEAG
Sbjct: 60 IMQPGQGLTEITCRILEGLKPILADFKPDVVLVHGDTTTTIATSLAAFYQRIPVGHVEAG 119
Query: 120 LRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIR-ENVFVVGNTIVDAVLQ 176
LR+ D PEE NR L H + FAPT +++NL RE I E +FV GNT++DA++
Sbjct: 120 LRTGDLYSPWPEEANRTLTGHLAMYHFAPTENSRQNLLRENIPDERIFVTGNTVIDALIW 179
Query: 177 NSKIAEKKSKILSELGLE------PKSYILVTAHRKENVDN--KDRLKKLVDILTSLP-M 227
+ +EL + K ILVT HR+E+ + + L +I + +
Sbjct: 180 VRDRVLTSDTLQAELAEQYPFLNANKKMILVTGHRRESFGQGFEHICQALAEIAAANQNV 239
Query: 228 QVVYPVHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEA 287
Q+VYPVH + +++ V+L++P YL F+ L +A++++TDSGGIQEEA
Sbjct: 240 QIVYPVHLNPNVSEPVNRILGHVEN--VVLIEPQDYLPFVWLMNHAWLILTDSGGIQEEA 297
Query: 288 IILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFG 347
L P L +R TERPE + AG L+G + + V +L+ DE Y+ M+ A NP+G
Sbjct: 298 PSLGKPVLVMRETTERPEAITAGTVRLIGTDSRRIVAEVMRLLHDENEYQTMSRAHNPYG 357
Query: 348 DGRSGERIVSIL 359
DG+S RI+ L
Sbjct: 358 DGQSCARILQAL 369
>pir||A82264 UDP-N-acetylglucosamine 2-epimerase VC0917 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655374|gb|AAF94079.1| (AE004175)
UDP-N-acetylglucosamine 2-epimerase [Vibrio cholerae]
Length = 372
Score = 192 bits (484), Expect = 4e-48
Identities = 139/379 (36%), Positives = 208/379 (54%), Gaps = 38/379 (10%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKND--IQPILIHTGQHYDYEMSSIFLEELEL-PEIDYHLE 61
I+FGTRPE IK++P+++ +++ + + + TGQH EM LE + P+ D ++
Sbjct: 6 IVFGTRPEAIKMAPLVQQLCQDNRFVAKVCV-TGQHR--EMLDQVLELFSITPDFDLNIM 62
Query: 62 VGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLR 121
T T ++ +++VL +E PDV +V GDT T A +LA+ IPV HVEAGLR
Sbjct: 63 EPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR 122
Query: 122 SFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIR-ENVFVVGNTIVDAVLQNS 178
+ + PEE NR L ++ FAPT ++ NL +E EN+FV GNT++DA+L
Sbjct: 123 TGNIYSPWPEEGNRKLTAALTQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDALLA-- 180
Query: 179 KIAEKKSKILSELGLEP------------KSYILVTAHRKENVDNK-DRL-KKLVDILTS 224
+ KI +++ L+ K ILVT HR+E+ +R+ + L+
Sbjct: 181 ----VREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQ 236
Query: 225 LP-MQVVYPVH--PRAEKRLKEFGLWDRLKS-SGVMLLKPLGYLDFLKLEKNAFIVMTDS 280
P Q++YPVH P + + + LK S ++L++P YL F+ L A I++TDS
Sbjct: 237 HPECQILYPVHLNPNVREPVNKL-----LKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS 291
Query: 281 GGIQEEAIILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMA 340
GGIQEEA L P L +R TERPE V AG LVG + + L+ D Y+ M+
Sbjct: 292 GGIQEEAPSLGKPVLVMRETTERPEAVAAGTVKLVGTNQQQICDALSLLLTDPQAYQAMS 351
Query: 341 SAKNPFGDGRSGERIVSIL 359
A NP+GDG++ +RI IL
Sbjct: 352 QAHNPYGDGKACQRIADIL 370
>sp|P52641|EPSC_BURSO PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE
(UDP-GLCNAC-2-EPIMERASE) >gi|7448296|pir||S77637
probable UDP-N-acetylglucosamine 2-epimerase (EC
5.1.3.14) - Pseudomonas solanacearum
>gi|600867|gb|AAA91626.1| (U17898) EpsC [Ralstonia
solanacearum]
Length = 396
Score = 192 bits (483), Expect = 5e-48
Identities = 127/366 (34%), Positives = 199/366 (53%), Gaps = 20/366 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVG 63
++FGTRPE IK++P+++A + +Q + T QH + + L ++ P+ D ++
Sbjct: 27 VVFGTRPEAIKMAPLVKALQADASLQCGVCVTAQHREMLDQVLRLFDIR-PDYDLNVMKP 85
Query: 64 SGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSF 123
E T + ++ VL + PD+ +V GDT+T LA LA+ +PV H+EAGLR+
Sbjct: 86 GQDLYELTSNILTGVKSVLESFEPDLVLVHGDTSTTLATTLAAYYKQVPVGHIEAGLRTG 145
Query: 124 D--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAVL----- 175
+ PEE+NR + + + FAPT +++NL EG+ + V V GNT++DA+L
Sbjct: 146 NLYSPWPEEVNRKVTGSLAALHFAPTERSRRNLLNEGVPADAVVVTGNTVIDALLSVRQR 205
Query: 176 -QNSKIAEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSLP-----MQV 229
Q + + L + + +LVT HR+E+ D +++ LTS+ + +
Sbjct: 206 LQTDTALCRNTASLIPYNIGERRIVLVTGHRRESFG--DGFERICSTLTSIARAHPDVDI 263
Query: 230 VYPVHPRAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAII 289
VYPVH R L + + + L++PL YL F+ L A I++TDSGGIQEEA
Sbjct: 264 VYPVHLNPNVREPVGRLLKGI--ANIHLIEPLDYLPFVYLMDKAHIILTDSGGIQEEAPS 321
Query: 290 LNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDG 349
L P L +R TERPE V+AG LVG D + L+ D++ Y+ M+ A NP+GDG
Sbjct: 322 LGKPVLVMRDTTERPEAVEAGTVRLVGTSVDALVDSATALLNDDSAYEAMSRAHNPYGDG 381
Query: 350 RSGERI 355
+ RI
Sbjct: 382 AASARI 387
>sp|P52642|RFBC_SALBO UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (UDP-GLCNAC-2-EPIMERASE)
>gi|666938|gb|AAC98403.1| (L39794)
UDP-N-acetylglucosamine 2-epimerase [Plasmid pWQ799]
Length = 378
Score = 192 bits (483), Expect = 5e-48
Identities = 139/380 (36%), Positives = 209/380 (54%), Gaps = 35/380 (9%)
Query: 6 IFGTRPEIIKLSPVIRAFIKND-IQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVGS 64
+FGTRPE IK++P++ F N I+ + TGQH EM L+ E+ E DY L +
Sbjct: 7 VFGTRPEAIKMAPLVIEFKNNPAIEVKVCVTGQHR--EMLDQVLDFFEI-EPDYDLNIMK 63
Query: 65 GTQA--EQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRS 122
Q+ T + +++++L + +P V GDT T A +LA+ I V H+EAGLR+
Sbjct: 64 QKQSLGSITCSILTRLDEILASFMPAHIFVHGDTTTTFAASLAAFYQNIKVWHIEAGLRT 123
Query: 123 FDRT--MPEEINRILADHSSEVLFAPTLEAKKNLEREGIRE-NVFVVGNTIVDAVLQN-S 178
++ PEE NR L + APTL+AK NL RE ++E N+ V GNT++DA+L
Sbjct: 124 WNMNSPFPEEGNRQLTSKLAFFHAAPTLQAKDNLLRESVKEKNIIVTGNTVIDALLIGIK 183
Query: 179 KIAEKKSKILSELGLE-----PKSYILVTAHRKENVDNKDRLKKLVDILTSLPMQ----- 228
KI + + L+ K ILVT HR+EN + L+ + D + L ++
Sbjct: 184 KITGSTGDVREIISLKNKLNLDKKIILVTLHRREN--QGELLRTICDDIKQLALEHDDIE 241
Query: 229 VVYPVH--PRAEKRLKEFGLWDRLKSSGVM---LLKPLGYLDFLKLEKNAFIVMTDSGGI 283
+V+PVH PR + + E K SGV+ L++PL Y F+ L NA +++DSGG+
Sbjct: 242 IVFPVHMSPRIREVVNE-------KLSGVVNIKLVEPLAYPGFIWLMNNAHFILSDSGGV 294
Query: 284 QEEAIILNVPCLTLRYNTERPETVKAGGNILVGVE-KDLALRYVKKLIEDEAFYKRMASA 342
QEEA L P L R TERPE ++ G +LV + KKL+ DE Y++M+ A
Sbjct: 295 QEEAPSLQKPVLVARDTTERPEVIENGAAMLVDPRIPNNIYSSCKKLLSDERLYEKMSQA 354
Query: 343 KNPFGDGRSGERIVSILMTL 362
NPFGDG++ ++I+ ++L
Sbjct: 355 GNPFGDGKASKKILDYFVSL 374
>pir||S76682 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1208458|dbj|BAA10626.1| (D64004) hypothetical
protein [Synechocystis sp.]
Length = 371
Score = 187 bits (471), Expect = 1e-46
Identities = 129/370 (34%), Positives = 193/370 (51%), Gaps = 19/370 (5%)
Query: 5 IIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHLEVG 63
I GTRPE IKL+PVIRAF+ D+ ++ TGQH + + L L + D +
Sbjct: 10 ITLGTRPEAIKLAPVIRAFLAQPDMHTQVLLTGQHREMVQQVMDLFALSA-DADLEIMQP 68
Query: 64 SGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSF 123
T + T + + ++ + P + IVQGDT T A ALA+ IP+ HVEAGLR+
Sbjct: 69 GQTLTDITQGCLEGLGQLWQEKPPQLVIVQGDTTTAFAAALAAFYQQIPIGHVEAGLRTD 128
Query: 124 D--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVDAVLQNSKIA 181
+ PEE NR L +++ FAPT A +NL R + + + GNT++DA+L +A
Sbjct: 129 NLFNPYPEEANRRLISQIAQLHFAPTTLAVENLRRSDVTGEIHLTGNTVIDALLT---VA 185
Query: 182 EKKSKI-LSELGLEPKSYILVTAHRKENVDN--KDRLKKLVDILTSLP-MQVVYPVHPRA 237
E+K + L + +L T HR+EN +D L IL P ++ P+H
Sbjct: 186 EQKPACPIPGLDWQKHRVLLATVHRRENWGEPLQDILTSFSQILEQFPDTALLLPMHRNP 245
Query: 238 EKR---LKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPC 294
R K G R V L +PL Y + ++ ++++TDSGG+QEEA L P
Sbjct: 246 TVREPIQKALGNHPR-----VFLTEPLDYAQLVGAIQHCYLLLTDSGGLQEEAPSLGKPV 300
Query: 295 LTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGER 354
L LR TERPE + AG LVG + + +L+ Y++MA+A NPFGDG + ++
Sbjct: 301 LVLRETTERPEAIAAGTAKLVGTDPAAVTKAAGELLSQPQAYEQMANAINPFGDGTASQK 360
Query: 355 IVSILMTLWE 364
I+ I+ ++
Sbjct: 361 IIEIVRNYFQ 370
>pir||B82014 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) NMA0199
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378968|emb|CAB83513.1| (AL162752) putative
UDP-N-acetyl-D-glucosamine 2-epimerase [Neisseria
meningitidis Z2491]
Length = 372
Score = 184 bits (462), Expect = 2e-45
Identities = 139/377 (36%), Positives = 199/377 (51%), Gaps = 25/377 (6%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIK-NDIQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ +FGTRPE IK++PVI K N I + T QH + + L E++ DY
Sbjct: 1 MKVLTVFGTRPEAIKMAPVILELQKHNTITSKVCITAQHREMLDQVLSLFEIKA---DYD 57
Query: 60 LEVGSGTQAEQ--TGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVE 117
L + Q+ Q T + + VL + PD +V GDT T A +LA+ IPV H+E
Sbjct: 58 LNIMKPNQSLQEITTNIISSLTDVLEDFKPDCVLVHGDTTTTFAASLAAFYQKIPVGHIE 117
Query: 118 AGLRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAV 174
AGLR+++ PEE NR L S+ FAPT ++K NL E I + V V GNT++DA+
Sbjct: 118 AGLRTYNLYSPWPEEANRRLTSVLSQWHFAPTEDSKNNLLSESIPSDKVIVTGNTVIDAL 177
Query: 175 ---LQNSKIAEKKSKILSELGL--EPKSYILVTAHRKENVDN--KDRLKKLVDILTSLP- 226
L+ KI K ++ + IL+TAHR+EN K+ ++++ P
Sbjct: 178 MVSLEKLKITTIKKQMEQAFPFIQDNSKVILITAHRRENHGEGIKNIGLSILELAKKYPT 237
Query: 227 MQVVYPVH--PRAEKRLKEFGLWDRLKS-SGVMLLKPLGYLDFLKLEKNAFIVMTDSGGI 283
V P+H P K ++ D L S V L++P YL F+ L + I+++DSGGI
Sbjct: 238 FSFVIPLHLNPNVRKPIQ-----DLLSSVHNVHLIEPQEYLPFVYLMSKSHIILSDSGGI 292
Query: 284 QEEAIILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAK 343
QEEA L P L LR TERPE V AG LVG E + +LIE +Y++MA+ +
Sbjct: 293 QEEAPSLGKPVLVLRDTTERPEAVAAGTVKLVGSETQNIIESFTQLIEYPEYYEKMANIE 352
Query: 344 NPFGDGRSGERIVSILM 360
NP+G G + + IV L+
Sbjct: 353 NPYGIGNASKIIVETLL 369
>gb|AAC38285.1| (AF019760) putative UDP-N-acetyl-D-glucosamine 2-epimerase
[Neisseria meningitidis serogroup A]
Length = 372
Score = 182 bits (458), Expect = 5e-45
Identities = 138/377 (36%), Positives = 198/377 (51%), Gaps = 25/377 (6%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIK-NDIQPILIHTGQHYDYEMSSIFLEELELPEIDYH 59
M+ +FGTRPE IK++PVI K N I + T QH + + L E++ DY
Sbjct: 1 MKVLTVFGTRPEAIKMAPVILELQKHNTITSKVCITAQHREMLDQVLSLFEIKA---DYD 57
Query: 60 LEVGSGTQAEQ--TGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVE 117
L + Q+ Q T + + VL + PD + GDT T A +LA+ IPV H+E
Sbjct: 58 LNIMKPNQSLQEITTNIISSLTDVLEDFKPDCVLAHGDTTTTFAASLAAFYQKIPVGHIE 117
Query: 118 AGLRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAV 174
AGLR+++ PEE NR L S+ FAPT ++K NL E I + V V GNT++DA+
Sbjct: 118 AGLRTYNLYSPWPEEANRRLTSVLSQWHFAPTEDSKNNLLSESIPSDKVIVTGNTVIDAL 177
Query: 175 ---LQNSKIAEKKSKILSELGL--EPKSYILVTAHRKENVDN--KDRLKKLVDILTSLP- 226
L+ KI K ++ + IL+TAHR+EN K+ ++++ P
Sbjct: 178 MVSLEKLKITTIKKQMEQAFPFIQDNSKVILITAHRRENHGEGIKNIGLSILELAKKYPT 237
Query: 227 MQVVYPVH--PRAEKRLKEFGLWDRLKS-SGVMLLKPLGYLDFLKLEKNAFIVMTDSGGI 283
V P+H P K ++ D L S V L++P YL F+ L + I+++DSGGI
Sbjct: 238 FSFVIPLHLNPNVRKPIQ-----DLLSSVHNVHLIEPQEYLPFVYLMSKSHIILSDSGGI 292
Query: 284 QEEAIILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAK 343
QEEA L P L LR TERPE V AG LVG E + +LIE +Y++MA+ +
Sbjct: 293 QEEAPSLGKPVLVLRDTTERPEAVAAGTVKLVGSETQNIIESFTQLIEYPEYYEKMANIE 352
Query: 344 NPFGDGRSGERIVSILM 360
NP+G G + + IV L+
Sbjct: 353 NPYGIGNASKIIVETLL 369
>gb|AAD56744.1|AF125164_17 (AF125164) putative epimerase [Bacteroides fragilis]
Length = 394
Score = 180 bits (452), Expect = 2e-44
Identities = 114/341 (33%), Positives = 185/341 (53%), Gaps = 16/341 (4%)
Query: 1 MRPAIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
+R II GTRPEII+L+ VI + IL HTGQ+YDY ++ +F +L L D ++
Sbjct: 18 LRLLIIVGTRPEIIRLAAVINK-CRRYFDCILAHTGQNYDYNLNGVFFHDLGLQAPDVYM 76
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
+ G + K++ + PD +V GDTN+ L+ +++ +L IP+ H+EAG
Sbjct: 77 DAVGDDLGSTMGNILNASYKLMSHLRPDAVLVLGDTNSCLS-VISAKRLHIPIFHMEAGN 135
Query: 121 RSFDRTMPEEINRILADHSSEVLFAPTLEAKKNLEREGI-RENVFVVGNTIVDAVLQNSK 179
R FD +PEE NR + D S++ + A++ L G+ +E +V G+ + + + +N
Sbjct: 136 RCFDECLPEETNRRIVDIISDMNLCYSEHARRYLNASGVAKERTYVTGSPMAEVLSENLS 195
Query: 180 IAEKKSKILSELGLEPKSYILVTAHRKENVDNKDRLKKLVDILTSL----PMQVVYPVHP 235
E S I + LGL YIL++AHR+EN+D L + + ++ M V+Y HP
Sbjct: 196 AIES-SDIHARLGLRKGQYILLSAHREENIDTDKNFASLFEGINAMAEKYDMPVLYSCHP 254
Query: 236 RAEKRLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIIL----- 290
R+ RL+ G S V+ PLG+ D+ L+ +A+ V++DSG + EE+
Sbjct: 255 RSRNRLESSGF---KLDSRVIRHAPLGFHDYNCLQMHAYAVVSDSGTLPEESSFFTSVGH 311
Query: 291 NVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIE 331
+ P + +R +TERPE + G IL G++K L+ V +E
Sbjct: 312 SFPAVCIRTSTERPEALDKGCFILAGIDKASLLQAVDTAVE 352
>pir||A75380 UDP-N-acetylglucosamine 2-epimerase - Deinococcus radiodurans
(strain R1) >gi|6459326|gb|AAF11125.1|AE002000_1
(AE002000) UDP-N-acetylglucosamine 2-epimerase
[Deinococcus radiodurans]
Length = 384
Score = 164 bits (411), Expect = 1e-39
Identities = 129/383 (33%), Positives = 193/383 (49%), Gaps = 36/383 (9%)
Query: 2 RPAIIFGTRPEIIKLSPVIRAFIKND-IQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
R + FGTRPE K++PV RA + + P+++ TGQ +++ + +L P+ D ++
Sbjct: 10 RIVLAFGTRPEATKMAPVYRALERTPGLTPLILSTGQQRQMLDAALNVFDLT-PDRDLNV 68
Query: 61 EVGSGTQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGL 120
T A+ T + + KVL D+ +V GDT+T AL++ IPV HVEAGL
Sbjct: 69 MTDRQTLADLTARIVPQAGKVLREMGADMVLVHGDTSTSFCVALSAFYEGIPVGHVEAGL 128
Query: 121 RSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIREN-VFVVGNTIVDAVLQN 177
RS + PEE NR L S + FAPT +++NL REG + +FV G T VDAV +
Sbjct: 129 RSGNLREPFPEEANRRLTGVLSTLDFAPTAASRENLRREGKPDTGIFVTGQTAVDAVRE- 187
Query: 178 SKIAEKKSKILSELGLEPK---------SYILVTAHRKENVDN-KDRLKKLVDILTSLPM 227
+ + L P+ + VT HR+EN ++ + L + + P
Sbjct: 188 ---------VAGRVPLRPEWQARRDAGQPLVTVTMHRRENQPTMREMAQALGRVAAAFPN 238
Query: 228 Q-VVYPVH--PRAEKRLKEFGLWDRLKS-SGVMLLKPLGYLDFLKLEKNAFIVMTDSGGI 283
+YPVH P ++ ++ L S L+ PL Y D L + ++ TDSGG+
Sbjct: 239 HHFIYPVHLSPAVQEAVRPV-----LGSVPNFELVDPLDYSDMAPLMAASVLLATDSGGL 293
Query: 284 QEEAIILNVPCLTLRYNTERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAK 343
QEE L VP LR TERPE V+AG L G + + L+ +EA RM +A+
Sbjct: 294 QEEGAALGVPVAVLRNVTERPEGVEAGVLKLAGNDPAQLEEVLTGLLGNEAELARMRAAR 353
Query: 344 NPFGDGRSGERIVSILMTLWESG 366
NP+GDG++ RI + + W G
Sbjct: 354 NPYGDGQAAGRIAAAI--AWHFG 374
>gb|AAC26022.1| (AF072734) NfrC homolog [Clostridium acetobutylicum]
Length = 242
Score = 136 bits (338), Expect = 5e-31
Identities = 96/253 (37%), Positives = 144/253 (55%), Gaps = 24/253 (9%)
Query: 140 SEVLFAPTLEAKKNLEREGIRE-NVFVVGNTIVDAV---LQNSKIAEKKSKILSELGLEP 195
+++ FAPTL +KKNL RE + E N+F+ GNT+VDA+ ++ + E L++L +
Sbjct: 2 ADLHFAPTLGSKKNLLREAVNEKNIFITGNTVVDAMNHTVEKDYVFENDE--LNKLDYKN 59
Query: 196 KSYILVTAHRKENVDNKDRLKKLVDILTSL--------PMQVVYPVHPRAEKRLKEFGLW 247
K I+VTAHR+EN K + +I T+L +++VY VH + +
Sbjct: 60 KKVIMVTAHRRENWG-----KGIENICTALRRIAEENEDVEIVYLVHLNPVVKDVVYNNL 114
Query: 248 DRLKSSGVMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVPCLTLRYNTERPETV 307
+ +K GV LL PL + L F+VM DSGG+QEEA L P L LR TERPE V
Sbjct: 115 NGMK--GVHLLPPLDTKETHNLMNKCFMVMADSGGLQEEAPHLGKPVLVLRDVTERPEAV 172
Query: 308 KAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILMTLWESGR 367
+AG LVG + + K+++DE Y++M+ A NP+GDG++ +RIV + L+ G
Sbjct: 173 EAGTVKLVGTDIKKIVDEAYKIMKDEEEYEKMSKAINPYGDGKASDRIVDAI--LYHFGV 230
Query: 368 LKVKTSNFITPQK 380
LK + F +P+K
Sbjct: 231 LKDRPDEF-SPKK 242
>emb|CAA46484.1| (X65511) ORF [Anabaena sp.]
Length = 178
Score = 111 bits (276), Expect = 1e-23
Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 2 RPAIIFGTRPEIIKLSPVIRAFIKN-DIQPILIHTGQHYDYEMSSIFLEELELPEIDYHL 60
R II GTRPE IKL+PVI+ F K+ D + +I TGQH + + L L+ DY L
Sbjct: 6 RVCIILGTRPEAIKLAPVIQVFQKSPDFELQVILTGQHREMVEQVMQLFNLKA---DYDL 62
Query: 61 EVGSGTQA--EQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEA 118
E+ Q+ + T ++ +E + + PD+ +VQGDT T A +LA+ IPV HVEA
Sbjct: 63 EIMQPQQSLSDITCRSLRGLEGLFIQNKPDLVLVQGDTTTAFAASLAAFYQKIPVGHVEA 122
Query: 119 GLRSFD--RTMPEEINRILADHSSEVLFAPTLEAKKNLEREGIRENVFVVGNTIVD 172
GLR+ + PEE NR L +++ FAPT A +NL+R G+ + + GNT++D
Sbjct: 123 GLRTDELFNPYPEEANRRLISQITQLHFAPTTLAVENLQRSGVLGEIHLTGNTVID 178
>gb|AAG20672.1| (AE005136) UDP-N-acetylglucosamine 2-epimerase; Uae [Halobacterium
sp. NRC-1]
Length = 457
Score = 92.8 bits (227), Expect = 6e-18
Identities = 118/419 (28%), Positives = 181/419 (43%), Gaps = 63/419 (15%)
Query: 4 AIIFGTRPEIIKLSPVIRAFIKNDIQPILIHTGQHYDYEMSSIFLEELEL-PEIDYHLEV 62
A++ T+P+ K +PV+ A ND+ +IHTGQHYD ++ LEE + P I L +
Sbjct: 24 AVVTATKPDFYKQAPVVAAAEANDVPCFVIHTGQHYD-DVLGHGLEEYGIEPHIAADLGI 82
Query: 63 -GSGTQAEQTGIAMIKIEKVLMNEVPDVSI---VQGDTNTVLAGALASVKLLI---PVAH 115
G TQ + +K + PD ++ V GDT+ AG + VAH
Sbjct: 83 RGDLTQKTAEMMLAVKTLAERLEAWPDTTVLPMVHGDTHA--AGVFPQAWMFATNQQVAH 140
Query: 116 VEAGLRSF------------------------DRT--MPEEINRILADHSSEVLFAPTLE 149
EAGLR +RT PE+ + + +S FAP
Sbjct: 141 NEAGLRGMAPAYETTDDPAAVIREQWRGDWHVERTEPFPEQYDTFVGSAASIYQFAPVAL 200
Query: 150 AKKNLEREGI------RENVFVVGNTIVDAV-LQNSKIAEKKSKILSELGLEPKSYILVT 202
+++LEREG E + VVGN++VDA+ ++ E + L ++ V
Sbjct: 201 NREHLEREGYPRSVDGHERMPVVGNSVVDAIEMKRDHDGESVFDVYPVLEAR-DDWLRVD 259
Query: 203 AHRKENVDNKDRLKKLVDILTSLPMQ--VVYPVHPRAEKR-LKEFGLWDRLKSSG----- 254
HR+ N+ +R +V+ + L + V V A KR L+ +G +RL+
Sbjct: 260 IHRRANL-LPERFTAIVEGVIELVERGYNVNFVELNATKRALENYGYRERLQRLADEREN 318
Query: 255 ----VMLLKPLGYLDFLKLEKNAFIVMTDSGGIQEEAIILNVP-CLTLRYNTERPETV-K 308
+ K +FL+ F TDSG +QEE + CLT R++T+RPETV
Sbjct: 319 FLFTGLWKKHAHVYEFLE-SGQCFAEFTDSGSMQEELNEIEAALCLTARFSTDRPETVFD 377
Query: 309 AGGNILV-GVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIVSILMTLWESG 366
A N+LV + + E + +RM S + +G GE IV L + G
Sbjct: 378 ANTNLLVPPTSGAFVADMITHVAETDDVRERMRSGQALYG-ADVGEEIVEFLQARADDG 435
>emb|CAB65211.1| (AJ007311) N-acylglucosamine 2-epimerase [Legionella pneumophila]
Length = 377
Score = 69.5 bits (167), Expect = 6e-11
Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 25/306 (8%)
Query: 66 TQAEQTGIAMIKIEKVLMNEVPDVSIVQGDTNTVLAGALASVKLLIPVAHVEAGLRSFDR 125
+ A+ G ++ +V +E PDV ++ GD +LA A+A++ L IPV H+ G RS
Sbjct: 75 SMAKAIGHELLGFTEVFESETPDVVLLLGDRGEMLAAAIAAIHLNIPVVHLHGGERS--- 131
Query: 126 TMPEEINRILADHSSEVLFAPTLEAKKNLEREGIR-ENVFVVGNTIVDAVLQNSKIAEKK 184
+E+ R S F T +K+ L R G + E +F VG +D ++Q +
Sbjct: 132 GTVDEMVRHAISKLSHYHFVATEASKQRLIRMGEKEETIFQVGAPGLDEIMQYK--TSTR 189
Query: 185 SKILSELGLEPKSYILVTAHRK--ENVDN-KDRLKKLVDILTSLPMQVVYPVHPRAEK-- 239
G +P I + + + VD+ K + + ++ + +Q++ + P ++
Sbjct: 190 DVFNQRYGFDPDKKICLLIYHPVVQEVDSIKIQFQSVIQAALATNLQIIC-LEPNSDTGG 248
Query: 240 RLKEFGLWDRLKSSGVMLLKPLGYLDFLKLEKNAFIVM--TDSGGIQEEAIILNVPCLTL 297
L + + + V ++K L +F+ N+ +++ + SG I+ + LNV +
Sbjct: 249 HLIREVIQEYIDHPDVRIIKHLHRPEFIDCLANSDVMLGNSSSGIIEAASFNLNVVNVGS 308
Query: 298 RYN-TERPETVKAGGNILVGVEKDLALRYVKKLIEDEAFYKRMASAKNPFGDGRSGERIV 356
R N ER + V I V V D L ++ EA K N +GDG++ ER
Sbjct: 309 RQNLRERSDNV-----IDVDVTYDAILTGLR-----EALNKPKIKYSNCYGDGKTSERCY 358
Query: 357 SILMTL 362
+L T+
Sbjct: 359 QLLKTI 364
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.379
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134850997
Number of Sequences: 2977
Number of extensions: 5490367
Number of successful extensions: 13399
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13155
Number of HSP's gapped (non-prelim): 48
length of query: 381
length of database: 189,106,746
effective HSP length: 59
effective length of query: 322
effective length of database: 153,796,013
effective search space: 49522316186
effective search space used: 49522316186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)