BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0381 (PAB0381) DE:Hypothetical protein
         (171 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75174 hypothetical protein PAB0381 - Pyrococcus abyssi (st...   348  3e-95
pir||E71040 hypothetical protein PH1613 - Pyrococcus horikoshii ...   275  3e-73

>pir||D75174 hypothetical protein PAB0381 - Pyrococcus abyssi (strain Orsay)
           >gi|5457985|emb|CAB49475.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 171
           
 Score =  348 bits (883), Expect = 3e-95
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MGSPMSAKIHLIYKRIPNRVLERDDEVIADLGEIIVAKSRFSGMLAPLRVNGVEVIKNGY 60
           MGSPMSAKIHLIYKRIPNRVLERDDEVIADLGEIIVAKSRFSGMLAPLRVNGVEVIKNGY
Sbjct: 1   MGSPMSAKIHLIYKRIPNRVLERDDEVIADLGEIIVAKSRFSGMLAPLRVNGVEVIKNGY 60

Query: 61  WMIYFAFVGKDYDILKIYDENGNFKGLYIDVLAYTKREGNTVEMLDLFLDIFVFPNGEAF 120
           WMIYFAFVGKDYDILKIYDENGNFKGLYIDVLAYTKREGNTVEMLDLFLDIFVFPNGEAF
Sbjct: 61  WMIYFAFVGKDYDILKIYDENGNFKGLYIDVLAYTKREGNTVEMLDLFLDIFVFPNGEAF 120

Query: 121 LLDEDELEMALNYGLISKEDFMKAYKTANRILREIREGKFPPKIVWEYSLL 171
           LLDEDELEMALNYGLISKEDFMKAYKTANRILREIREGKFPPKIVWEYSLL
Sbjct: 121 LLDEDELEMALNYGLISKEDFMKAYKTANRILREIREGKFPPKIVWEYSLL 171


>pir||E71040 hypothetical protein PH1613 - Pyrococcus horikoshii
           >gi|3258042|dbj|BAA30725.1| (AP000006) 166aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 166
           
 Score =  275 bits (695), Expect = 3e-73
 Identities = 128/166 (77%), Positives = 148/166 (89%)

Query: 5   MSAKIHLIYKRIPNRVLERDDEVIADLGEIIVAKSRFSGMLAPLRVNGVEVIKNGYWMIY 64
           M  +I LIYKRIPNR+L R+DEVIADLG++IVA+S FSGMLAPL+VNGVEVI NGY M+Y
Sbjct: 1   MVGRITLIYKRIPNRILRREDEVIADLGDLIVARSEFSGMLAPLKVNGVEVINNGYKMVY 60

Query: 65  FAFVGKDYDILKIYDENGNFKGLYIDVLAYTKREGNTVEMLDLFLDIFVFPNGEAFLLDE 124
           FAF+GKD+D+LKIYD  G FKGLYIDVL YT+R GNT+EMLDLFLDIF+FP+GE FLLDE
Sbjct: 61  FAFIGKDFDVLKIYDRKGTFKGLYIDVLDYTRRSGNTIEMLDLFLDIFIFPSGEYFLLDE 120

Query: 125 DELEMALNYGLISKEDFMKAYKTANRILREIREGKFPPKIVWEYSL 170
           DELEMALNYGLIS+E F+KAY+TA RI+ EI  GKFPPK+VWEYSL
Sbjct: 121 DELEMALNYGLISREKFLKAYRTAERIISEIEGGKFPPKVVWEYSL 166


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.145    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66192382
Number of Sequences: 2977
Number of extensions: 2826232
Number of successful extensions: 5827
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5825
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 189,106,746
effective HSP length: 51
effective length of query: 120
effective length of database: 158,583,909
effective search space: 19030069080
effective search space used: 19030069080
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)