BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0382 (PAB0382) DE:Hypothetical protein
         (158 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75174 hypothetical protein PAB0382 - Pyrococcus abyssi (st...   317  3e-86
pir||A71040 hypothetical protein PH1609 - Pyrococcus horikoshii ...   302  1e-81
sp|Q57764|Y316_METJA HYPOTHETICAL PROTEIN MJ0316 >gi|2128234|pir...   134  4e-31
pir||C69216 conserved hypothetical protein MTH870 - Methanobacte...    87  1e-16

>pir||F75174 hypothetical protein PAB0382 - Pyrococcus abyssi (strain Orsay)
           >gi|5457987|emb|CAB49477.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 158
           
 Score =  317 bits (805), Expect = 3e-86
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MSWTTPKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNI 60
           MSWTTPKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNI
Sbjct: 1   MSWTTPKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNI 60

Query: 61  PIGMLLPTVYAHIESDEPGSTISAALGVGLSENNEGGLIYEYAGYCTKEEAEEMVRKMVE 120
           PIGMLLPTVYAHIESDEPGSTISAALGVGLSENNEGGLIYEYAGYCTKEEAEEMVRKMVE
Sbjct: 61  PIGMLLPTVYAHIESDEPGSTISAALGVGLSENNEGGLIYEYAGYCTKEEAEEMVRKMVE 120

Query: 121 EGFKVRGWKLKEIKVISAEITVKDKPAAAVAAVVMFPY 158
           EGFKVRGWKLKEIKVISAEITVKDKPAAAVAAVVMFPY
Sbjct: 121 EGFKVRGWKLKEIKVISAEITVKDKPAAAVAAVVMFPY 158


>pir||A71040 hypothetical protein PH1609 - Pyrococcus horikoshii
           >gi|3258038|dbj|BAA30721.1| (AP000006) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score =  302 bits (766), Expect = 1e-81
 Identities = 147/158 (93%), Positives = 154/158 (97%)

Query: 1   MSWTTPKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNI 60
           M+W TPKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNI
Sbjct: 1   MTWITPKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNI 60

Query: 61  PIGMLLPTVYAHIESDEPGSTISAALGVGLSENNEGGLIYEYAGYCTKEEAEEMVRKMVE 120
           PIGMLLPTVYAHIESDEPGSTISAALGVG+SE NEGGLIYEYAGYC +EEAE+MVRKMVE
Sbjct: 61  PIGMLLPTVYAHIESDEPGSTISAALGVGISEGNEGGLIYEYAGYCKREEAEDMVRKMVE 120

Query: 121 EGFKVRGWKLKEIKVISAEITVKDKPAAAVAAVVMFPY 158
           EGFKVRGWKLKE KV+SAEITVK+KPAAAVAAV+MFPY
Sbjct: 121 EGFKVRGWKLKEFKVVSAEITVKEKPAAAVAAVIMFPY 158


>sp|Q57764|Y316_METJA HYPOTHETICAL PROTEIN MJ0316 >gi|2128234|pir||E64339 hypothetical
           protein MJ0316 - Methanococcus jannaschii
           >gi|1591036|gb|AAB98302.1| (U67486) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 165
           
 Score =  134 bits (335), Expect = 4e-31
 Identities = 72/152 (47%), Positives = 103/152 (67%), Gaps = 3/152 (1%)

Query: 6   PKKAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNIPIGML 65
           P    ++A ++EG T LNAFD ALL  GIGNVNL+++SS++P   E +  LPK +P+G L
Sbjct: 15  PNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRISSIMPPEAE-IVPLPK-LPMGAL 72

Query: 66  LPTVYAHIESDEPGSTISAALGVGLSENNE-GGLIYEYAGYCTKEEAEEMVRKMVEEGFK 124
           +PT Y +I SD PG TISAA+ V + ++    GLI EY G C+K+EAE+ VR+M + GF+
Sbjct: 73  VPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFE 132

Query: 125 VRGWKLKEIKVISAEITVKDKPAAAVAAVVMF 156
           +RGW+L  I+ I+ E TV+    A  AA + +
Sbjct: 133 MRGWELDRIESIAVEHTVEKLGCAFAAAALWY 164


>pir||C69216 conserved hypothetical protein MTH870 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621963|gb|AAB85368.1| (AE000863) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 151
           
 Score = 87.0 bits (212), Expect = 1e-16
 Identities = 62/152 (40%), Positives = 92/152 (59%), Gaps = 14/152 (9%)

Query: 8   KAIMLAAAAEGGTKLNAFDNALLKMGIGNVNLVKLSSVIPAHIEWLDELPKNIPIGMLLP 67
           K  + + AAEG TKLNAFDNALL+ GIG+VNL+K+SS++P +   + ELP+  P G ++ 
Sbjct: 6   KVAITSGAAEGPTKLNAFDNALLQAGIGDVNLIKVSSILPRNTR-IVELPELEP-GSIVN 63

Query: 68  TVYAHIESDEPGSTISAALGVGLSENNEGGLIYEYAGYC-----TKEEAEEMVRKMVEEG 122
            V +H+ S+  G  ISAA+ V  S  ++ G + E +         + EA  MVR M+   
Sbjct: 64  CVLSHMVSERRGDLISAAVAVATS--SDFGCVVENSSVNRDPEDVRSEAISMVRYMMS-- 119

Query: 123 FKVRGWKLKEIKVISAEITVKDKPAAAVAAVV 154
             VRG ++KE+ ++     V +K  AAV+AVV
Sbjct: 120 --VRGLEIKEL-IVEETNHVVEKCGAAVSAVV 148


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60940199
Number of Sequences: 2977
Number of extensions: 2410180
Number of successful extensions: 5008
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5003
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 189,106,746
effective HSP length: 56
effective length of query: 102
effective length of database: 155,591,474
effective search space: 15870330348
effective search space used: 15870330348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 161 (67.1 bits)