BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0383 (PAB0383) DE:Hypothetical protein
(916 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75175 hypothetical protein PAB0383 - Pyrococcus abyssi (st... 1851 0.0
pir||B71039 hypothetical protein PH1602 - Pyrococcus horikoshii ... 1467 0.0
sp|Q58095|Y682_METJA HYPOTHETICAL PROTEIN MJ0682 >gi|2129103|pir... 1061 0.0
pir||B69080 conserved hypothetical protein MTH1597 - Methanobact... 524 e-147
gi|11498468 conserved hypothetical protein [Archaeoglobus fulgid... 516 e-145
pir||D72559 hypothetical protein APE1758 - Aeropyrum pernix (str... 510 e-143
gb|AAK41240.1| Conserved hypothetical protein [Sulfolobus solfat... 504 e-141
pir||E72265 conserved hypothetical protein - Thermotoga maritima... 427 e-118
pir||G70302 conserved hypothetical protein aq_032 - Aquifex aeol... 416 e-115
gb|AAF53797.1| (AE003662) CG9987 gene product [Drosophila melano... 409 e-113
gi|7657015 hypothetical protein; similar to C. elegens hypotheti... 403 e-111
gi|11418016 similar to C. elegens hypothetical 55.2 kD protein F... 403 e-111
sp|P90838|YT6J_CAEEL HYPOTHETICAL 55.2 KD PROTEIN F16A11.2 IN CH... 398 e-109
gb|AAF29081.1|AF161466_1 (AF161466) HSPC117 [Homo sapiens] 398 e-109
gb|AAF67477.1|AF155658_1 (AF155658) putative 55 kDa protein [Hom... 397 e-109
pir||T21006 hypothetical protein F16A11.2 - Caenorhabditis elegans 379 e-104
gb|AAG19760.1| (AE005061) Vng1454c [Halobacterium sp. NRC-1] 361 2e-98
emb|CAC11424.1| (AL445063) conserved hypothetical protein [Therm... 353 4e-96
pir||T46344 hypothetical protein DKFZp434I1614.1 - human (fragme... 214 3e-54
sp|P71930|YQ31_MYCTU HYPOTHETICAL 27.9 KDA PROTEIN RV2631 >gi|74... 204 4e-51
pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) subunit A' ... 199 9e-50
sp|Q58445|RPA1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT A' >gi|... 199 9e-50
pir||C75198 activator 1, replication factor c, small chain PAB00... 145 2e-33
pir||E64477 replication factor C homolog - Methanococcus jannasc... 144 4e-33
pir||T36119 hypothetical protein SCE15.16c - Streptomyces coelic... 117 6e-25
pir||D75521 rtcB protein - Deinococcus radiodurans (strain R1) >... 113 7e-24
pir||F82963 hypothetical protein PA5471 [imported] - Pseudomonas... 113 1e-23
pir||C83072 conserved hypothetical protein PA4583 [imported] - P... 112 2e-23
dbj|BAB05508.1| (AP001513) unknown conserved protein in others [... 111 3e-23
sp|P46850|RTCB_ECOLI RTCB PROTEIN >gi|7466009|pir||H65137 hypoth... 111 5e-23
gb|AAA58219.1| (U18997) ORF_f408 [Escherichia coli] 108 3e-22
>pir||C75175 hypothetical protein PAB0383 - Pyrococcus abyssi (strain Orsay)
>gi|5457992|emb|CAB49482.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 916
Score = 1851 bits (4743), Expect = 0.0
Identities = 916/916 (100%), Positives = 916/916 (100%)
Query: 1 MTVPLKRIDKIRWEIPKFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYS 60
MTVPLKRIDKIRWEIPKFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYS
Sbjct: 1 MTVPLKRIDKIRWEIPKFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYS 60
Query: 61 IVMPDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPE 120
IVMPDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPE
Sbjct: 61 IVMPDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPE 120
Query: 121 KFKLQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRIIEGSEDHPVLTPEG 180
KFKLQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRIIEGSEDHPVLTPEG
Sbjct: 121 KFKLQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRIIEGSEDHPVLTPEG 180
Query: 181 YVYLGNLKEGNLVIVYPFEGVEYEERKGVILDEDAFKDEDPQVLSFLREKGLVPLRWDDP 240
YVYLGNLKEGNLVIVYPFEGVEYEERKGVILDEDAFKDEDPQVLSFLREKGLVPLRWDDP
Sbjct: 181 YVYLGNLKEGNLVIVYPFEGVEYEERKGVILDEDAFKDEDPQVLSFLREKGLVPLRWDDP 240
Query: 241 RIGTIARILGFAFGDGYLGEMGGRLTLTFYGKEETLRELKKDLERLGISANLYVRESIET 300
RIGTIARILGFAFGDGYLGEMGGRLTLTFYGKEETLRELKKDLERLGISANLYVRESIET
Sbjct: 241 RIGTIARILGFAFGDGYLGEMGGRLTLTFYGKEETLRELKKDLERLGISANLYVRESIET 300
Query: 301 TSGHSEGKSLSIELRVTSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVKRNFLAG 360
TSGHSEGKSLSIELRVTSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVKRNFLAG
Sbjct: 301 TSGHSEGKSLSIELRVTSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVKRNFLAG 360
Query: 361 LFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLYEVKSKK 420
LFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLYEVKSKK
Sbjct: 361 LFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLYEVKSKK 420
Query: 421 GVTYRLSIVGEDSIRTFVERINYEYDPEKKVKGLIAAAYLKLKERIVKEAHEAVKDDFPT 480
GVTYRLSIVGEDSIRTFVERINYEYDPEKKVKGLIAAAYLKLKERIVKEAHEAVKDDFPT
Sbjct: 421 GVTYRLSIVGEDSIRTFVERINYEYDPEKKVKGLIAAAYLKLKERIVKEAHEAVKDDFPT 480
Query: 481 FEEFAKERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNCGVRLIR 540
FEEFAKERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNCGVRLIR
Sbjct: 481 FEEFAKERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNCGVRLIR 540
Query: 541 TNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEE 600
TNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEE
Sbjct: 541 TNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEE 600
Query: 601 DLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGL 660
DLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGL
Sbjct: 601 DLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGL 660
Query: 661 FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSA 720
FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSA
Sbjct: 661 FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSA 720
Query: 721 MKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVK 780
MKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVK
Sbjct: 721 MKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVK 780
Query: 781 VIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCHG 840
VIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCHG
Sbjct: 781 VIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCHG 840
Query: 841 AGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAG 900
AGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAG
Sbjct: 841 AGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAG 900
Query: 901 IAKLVARMRPIGVAKG 916
IAKLVARMRPIGVAKG
Sbjct: 901 IAKLVARMRPIGVAKG 916
>pir||B71039 hypothetical protein PH1602 - Pyrococcus horikoshii
>gi|3258031|dbj|BAA30714.1| (AP000006) 871aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 871
Score = 1467 bits (3755), Expect = 0.0
Identities = 725/917 (79%), Positives = 795/917 (86%), Gaps = 47/917 (5%)
Query: 1 MTVPLKRIDKIRWEIPKFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYS 60
M VPLKRIDKIRWEIPKFDKRMRVPGRVYAD+VLLEKMK+DRTLEQA NVAMLPGIYKYS
Sbjct: 1 MVVPLKRIDKIRWEIPKFDKRMRVPGRVYADEVLLEKMKNDRTLEQATNVAMLPGIYKYS 60
Query: 61 IVMPDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPE 120
IVMPDGHQGYGFPIGGVAAFDV EGVISPGGIGYDINCLAPG++VLTEHGYWLK+EE+PE
Sbjct: 61 IVMPDGHQGYGFPIGGVAAFDVKEGVISPGGIGYDINCLAPGTRVLTEHGYWLKIEEMPE 120
Query: 121 KFKLQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRIIEGSEDHPVLTPEG 180
KFKLQ ++VYN++EGHND S V FVAEREV + E A+R+ TESG++IEGSEDHPVLTPEG
Sbjct: 121 KFKLQRLRVYNIEEGHNDFSKVVFVAEREVGSEEKAIRIVTESGKVIEGSEDHPVLTPEG 180
Query: 181 YVYLGNLKEGNLVIVYPFEGVEYEERKGVILDEDAFKDEDPQVLSFLREKGLVPLRWDDP 240
YVYL N+KEG+ ++VYPFEGV YEE+KGVILDE AF+ EDPQV+ FLRE+ L+PL+W DP
Sbjct: 181 YVYLRNVKEGDYILVYPFEGVPYEEKKGVILDESAFEGEDPQVVKFLRERNLIPLQWKDP 240
Query: 241 RIGTIARILGFAFGDGYLGEMGGRLTLTFYGKEETLRELKKDLERLGISANLYVRESIET 300
++G +ARILGFA +GY+ E LTF+GKEE LRE++KDLE LGI A + +
Sbjct: 241 KVGILARILGFALANGYISENDN---LTFHGKEEVLREVRKDLEELGIEAIVAEED---- 293
Query: 301 TSGHSEGKSLSIELRVTSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVKRNFLAG 360
+L+VTSR FA LEKLGM +P WI+E PLW+KRNFLAG
Sbjct: 294 ------------KLKVTSREFAFLLEKLGMAHDS-------IPEWIIEGPLWIKRNFLAG 334
Query: 361 LFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLYEVKSKK 420
LF A+GSIVEFKG+ PLPI LT S+ E L DV+++L F + ++K K
Sbjct: 335 LFGANGSIVEFKGDVPLPITLTHSR---------ELLNDVSRILEGFKVRA---KIKMGK 382
Query: 421 GVTYRLSIVGEDSIRTFVERINYEYDPEKKVKGLIAAAYLKLKERIVKEAHEAVKDDFPT 480
+Y+L I EDSIR F+ RINYEYDPEKK +GLIA AYLK KE +K + T
Sbjct: 383 NGSYQLVIEDEDSIRNFLGRINYEYDPEKKARGLIAYAYLKFKE--------LMKGNLMT 434
Query: 481 FEEFAKERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNCGVRLIR 540
FEEFA++RGYEGGFVAEKV++V+ VKPEY KFYDIGVYH AHNFIANGIVVHNCGVRLIR
Sbjct: 435 FEEFARDRGYEGGFVAEKVIEVKSVKPEYDKFYDIGVYHSAHNFIANGIVVHNCGVRLIR 494
Query: 541 TNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEE 600
TNLTEK+VRPRIKQLVDTLFKNVPSGVGSQGR++LHWTQIDDVLVDGAKWAVDNGYGWE
Sbjct: 495 TNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWER 554
Query: 601 DLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGL 660
DLERLEEGGRMEGADP+AVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAK YGL
Sbjct: 555 DLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGL 614
Query: 661 FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSA 720
FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSA
Sbjct: 615 FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSA 674
Query: 721 MKAAANFAWANRQMITHWVRESFQEVFRQDPE-DLGMSIVYDVAHNIGKVEEHEVDGKKV 779
MKAAANFAWANRQMITHWVRESFQEVF+QDPE DLGM IVYDVAHNIGKVEEHEVDGK+V
Sbjct: 675 MKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRV 734
Query: 780 KVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCH 839
KVIVHRKGATRAFPPGHEA+P++YRDVGQPVLIPGSMGTASY+LAGTEGAMKETFGSTCH
Sbjct: 735 KVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAGTEGAMKETFGSTCH 794
Query: 840 GAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEA 899
GAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEA
Sbjct: 795 GAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEA 854
Query: 900 GIAKLVARMRPIGVAKG 916
GIAKLVARMRPIGVAKG
Sbjct: 855 GIAKLVARMRPIGVAKG 871
>sp|Q58095|Y682_METJA HYPOTHETICAL PROTEIN MJ0682 >gi|2129103|pir||B64385 malT-glpR
intergenic region hypothetical intein-containing protein
homolog MJ0682 - Methanococcus jannaschii
>gi|1591397|gb|AAB98677.1| (U67515) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 968
Score = 1061 bits (2714), Expect = 0.0
Identities = 548/970 (56%), Positives = 704/970 (72%), Gaps = 64/970 (6%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVM 63
LKR+ + WE+PK + MRVPGR+Y +++LL++++ + LEQ ANVA LPGIYKYSI M
Sbjct: 5 LKRVSDVVWELPKDYKDCMRVPGRIYLNEILLDELEPE-VLEQIANVACLPGIYKYSIAM 63
Query: 64 PDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPEKFK 123
PD H GYGF IGGVAAFD EGVISPGG+G+DINCL SK+LT+ GY++K+E+L EK
Sbjct: 64 PDVHYGYGFAIGGVAAFDQREGVISPGGVGFDINCLTSNSKILTDDGYYIKLEKLKEKLD 123
Query: 124 LQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRIIEGSEDHPVLTPEGYVY 183
L +K+YN +EG +SN+ FV+ER + E +R+ TESGR++EGS+DHPVLT GYV
Sbjct: 124 LH-IKIYNTEEGEK-SSNILFVSERYAD--EKIIRIKTESGRVLEGSKDHPVLTLNGYVP 179
Query: 184 LGNLKEGNLVIVYPFEGVEYEERKG-VILDEDAFKDEDPQVLSFLREKGLVPLRWDDPRI 242
+G LKEG+ VIVYP+EGVEYEE +ILDED F + D Q++ +L+++GL+PLR D+ I
Sbjct: 180 MGMLKEGDDVIVYPYEGVEYEEPSDEIILDEDDFAEYDKQIIKYLKDRGLLPLRMDNKNI 239
Query: 243 GTIARILGFAFGDGYLGEMGG---RLTLTFYGKEETLRELKKDLERLGISAN-LYVRE-S 297
G IAR+LGFAFGDG + + G RL + FYGK ETL ++++DLE+LGI A+ +Y R+
Sbjct: 240 GIIARLLGFAFGDGSIVKENGDRERLYVAFYGKRETLIKIREDLEKLGIKASRIYSRKRE 299
Query: 298 IETTSGHSEGKSLSIE---LRVTSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVK 354
+E + + + + E +++TS++FALF+ KLGMP GKKTE+ Y++P WI +AP WVK
Sbjct: 300 VEIRNAYGDEYTSLCEDNSIKITSKAFALFMHKLGMPIGKKTEQIYKIPEWIKKAPKWVK 359
Query: 355 RNFLAGLFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLY 414
RNFLAGLF ADGS FK TPLPINLT SKS+EL EN++EFL ++ LLAEF IE+ +Y
Sbjct: 360 RNFLAGLFGADGSRAVFKNYTPLPINLTMSKSEELKENILEFLNEIKLLLAEFDIESMIY 419
Query: 415 EVKSKKG-VTYRLSIVGEDSIRTFVERINYEYDPEKKVKGLIAAAYLKLKE-------RI 466
E+KS G V+YRL+IVGE+SI+ F+ RINYEY EKKV GL+A YL+ K+ +
Sbjct: 420 EIKSLDGRVSYRLAIVGEESIKNFLGRINYEYSGEKKVIGLLAYEYLRRKDIAKEIRKKC 479
Query: 467 VKEAHEAVK----------------------------------DD------FPTFEEFAK 486
+K A E K DD FP FEEF +
Sbjct: 480 IKRAKELYKKGVTVSEMLKMDEFRNEFISKRLIERAVYENLDEDDVRISTKFPKFEEFIE 539
Query: 487 ERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNCGVRLIRTNLTEK 546
+ G GGFV +K+ ++E + + +K YD+G+ + HNFIAN IVVHNCGVRLIRTNLT++
Sbjct: 540 KYGVIGGFVIDKIKEIEEISYD-SKLYDVGIVSKEHNFIANSIVVHNCGVRLIRTNLTKE 598
Query: 547 DVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEEDLERLE 606
+V+ +IK+L+ TLFKNVPSG+GS+G ++ + +DDVL +G +WAV GYGW+EDLE +E
Sbjct: 599 EVQSKIKELIKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIE 658
Query: 607 EGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGLFEGQVV 666
E G ++ AD VS +AK+RG QLGSLGSGNHFLEVQ V+K+FD E A++YG+ E QVV
Sbjct: 659 EHGCLKDADASYVSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEIYGIEENQVV 718
Query: 667 VMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAAN 726
V+VHTGSRGLGHQ+ +DYLRIME+A + Y I PDR+L PF+SEEGQ YF AM AN
Sbjct: 719 VLVHTGSRGLGHQICTDYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCCGAN 778
Query: 727 FAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVKVIVHRK 786
+AWANRQMITHWVRESF+EVF+ EDL M+IVYDVAHNI K EEH +DG+KVKVIVHRK
Sbjct: 779 YAWANRQMITHWVRESFEEVFKIHAEDLEMNIVYDVAHNIAKKEEHIIDGRKVKVIVHRK 838
Query: 787 GATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCHGAGRVLS 846
GATRAFPP HEAIPK Y VGQPV+IPG MGTASY++ GTE AMKETFGST HGAGR LS
Sbjct: 839 GATRAFPPKHEAIPKEYWSVGQPVIIPGDMGTASYLMRGTEIAMKETFGSTAHGAGRKLS 898
Query: 847 RKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVA 906
R A + ++G I++ L GI + S V+AEEAP AYK+VD V +AGI+ VA
Sbjct: 899 RAKALKLWKGKEIQRRLAEMGIVAMSDSKAVMAEEAPEAYKSVDLVADTCHKAGISLKVA 958
Query: 907 RMRPIGVAKG 916
RMRP+GV KG
Sbjct: 959 RMRPLGVIKG 968
>pir||B69080 conserved hypothetical protein MTH1597 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622721|gb|AAB86070.1| (AE000919) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 488
Score = 524 bits (1336), Expect = e-147
Identities = 246/384 (64%), Positives = 311/384 (80%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVR++RTNL +DVRP+IK+L++TLF NVPSGVGS+G++RL +ID+VL +GA+WAV
Sbjct: 105 NCGVRMVRTNLDHEDVRPKIKELINTLFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAV 164
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
+NGYGW++DL RLEE G+ME A + VS++AK+RG PQLGSLGSGNHFLEVQ+VD+IFD
Sbjct: 165 ENGYGWDQDLRRLEENGKMEDASSEKVSEKAKKRGIPQLGSLGSGNHFLEVQMVDEIFDE 224
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
E A+VYG+ G+V VM+H+GSRG GHQ+ SDYLR+M++A R+Y+I PDR+L P S+
Sbjct: 225 EAARVYGVSPGKVAVMIHSGSRGCGHQICSDYLRLMDKAYRRYKINIPDRQLACAPVDSD 284
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEH 772
E YF AM AAAN+AWANRQMI HWVRESF+ VF ED+ M IVYDVAHNI K E H
Sbjct: 285 EALDYFQAMAAAANYAWANRQMIVHWVRESFEAVFGMTAEDMEMEIVYDVAHNIAKKEVH 344
Query: 773 EVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKE 832
+ G++ +V VHRKGATRAF PG + IP+ YR +GQPV+IPG+MGT+SY+L GTE AM+E
Sbjct: 345 TIKGRETEVFVHRKGATRAFGPGRDEIPQEYRKIGQPVIIPGTMGTSSYLLHGTEVAMEE 404
Query: 833 TFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
TFGST HGAGR +SR A + YRG+ ++++L + GIYVRA SM VVAEEAPGAYK+VD V
Sbjct: 405 TFGSTAHGAGRKMSRAGAKKTYRGEEVQRKLESEGIYVRATSMPVVAEEAPGAYKDVDVV 464
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
V+ E GI++LVARM P+GVAKG
Sbjct: 465 VRTAHETGISRLVARMLPLGVAKG 488
Score = 101 bits (249), Expect = 4e-20
Identities = 49/95 (51%), Positives = 65/95 (67%), Gaps = 2/95 (2%)
Query: 5 LKRIDKIRWEIP-KFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVM 63
L ++ + WE+P + K MRVPGR++ + L ++ ++Q ANVA LPGI K+SI +
Sbjct: 13 LVKVRESVWEVPTSYKKGMRVPGRIFLREEALRDLEKG-AIDQVANVACLPGIQKFSIGL 71
Query: 64 PDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINC 98
PD H GYGF IGGV AF GVISPGG+G+DINC
Sbjct: 72 PDIHFGYGFSIGGVGAFSARTGVISPGGVGFDINC 106
>gi|11498468 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483060|pir||F69357 conserved hypothetical protein
AF0862 - Archaeoglobus fulgidus
>gi|2649735|gb|AAB90372.1| (AE001044) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 482
Score = 516 bits (1314), Expect = e-145
Identities = 242/384 (63%), Positives = 308/384 (80%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+R+NL +DV+P IK+L+D LF VPSGVGS+GR+R+ ++D++ V+GA+WAV
Sbjct: 99 NCGVRLLRSNLNVEDVKPLIKKLIDELFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAV 158
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
+NGYG+E DL+ EE G +EGA P+ VS++A+ RG PQLG+LGSGNHFLEVQ VDK+FD
Sbjct: 159 ENGYGYERDLKHCEEEGALEGARPEVVSKKARDRGRPQLGTLGSGNHFLEVQYVDKVFDE 218
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
+VA +G+ EG V VM+H GSRGLGHQV +D+L +++RA++KY I PDR+L P S+
Sbjct: 219 KVAAKFGIEEGMVTVMIHCGSRGLGHQVCTDFLEVLDRAVKKYGIKLPDRQLACAPINSK 278
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEH 772
EGQ YF+ M A+AN+AW NRQ+I HWVRE+FQ+V +DLGM +VYDVAHNI K EEH
Sbjct: 279 EGQDYFAGMAASANYAWCNRQIIAHWVRETFQKVMGMSEDDLGMELVYDVAHNIAKFEEH 338
Query: 773 EVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKE 832
VDGKK+K+ VHRKGATRAF PG + +P+ YRDVGQPVLIPGSMGT SY+L GTE AM+E
Sbjct: 339 RVDGKKMKLCVHRKGATRAFGPGLKEVPEDYRDVGQPVLIPGSMGTPSYILVGTEKAMEE 398
Query: 833 TFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
TFGSTCHG+GRV+SR AA R+ RG+ ++Q L +GIYVRA ++AEEAP AYK D+V
Sbjct: 399 TFGSTCHGSGRVMSRAAAKRKLRGNVVKQNLERKGIYVRATHGALLAEEAPEAYKLSDDV 458
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
V VV AGI+KLVAR+RP+GVAKG
Sbjct: 459 VDVVHRAGISKLVARLRPLGVAKG 482
Score = 115 bits (286), Expect = 2e-24
Identities = 56/95 (58%), Positives = 70/95 (72%), Gaps = 2/95 (2%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVM 63
LK+I +WE+PK + MRVP Y L++ ++ D +EQAANVA +PGI S+VM
Sbjct: 7 LKKITDYKWELPKSYKPGMRVPAYFYISRKLMQILEKD-AVEQAANVATMPGIQVASLVM 65
Query: 64 PDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINC 98
PD H GYGFPIGGVA FDVNEGV+SPGG+G+DINC
Sbjct: 66 PDVHVGYGFPIGGVAGFDVNEGVVSPGGVGFDINC 100
>pir||D72559 hypothetical protein APE1758 - Aeropyrum pernix (strain K1)
>gi|5105448|dbj|BAA80761.1| (AP000062) 483aa long
hypothetical protein [Aeropyrum pernix]
Length = 483
Score = 510 bits (1300), Expect = e-143
Identities = 246/384 (64%), Positives = 297/384 (77%), Gaps = 1/384 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVR++RTNLTE++VRP++K LVDTL+ NVPSG+GS G+V+L ++D VL G +WA+
Sbjct: 101 NCGVRVLRTNLTEEEVRPKLKDLVDTLYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAI 160
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GYGW ED E +EE G AD VSQ AK+RGA QLG+LGSGNHFLEVQVV+++FD
Sbjct: 161 SRGYGWPEDKEHIEERGSWSLADSSKVSQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDE 220
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
+AK YGLFEGQVVVM+HTGSRGLGHQVASDYL IMERA+RKY PDREL S+P+ S
Sbjct: 221 RIAKAYGLFEGQVVVMIHTGSRGLGHQVASDYLMIMERAMRKYGTIPPDRELASIPYNSP 280
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEH 772
E Q Y AM AAANFAW NRQMITHW RESF++VF QDP+ LG+ IVYDVAHNI K+EE+
Sbjct: 281 EAQNYVRAMAAAANFAWTNRQMITHWTRESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEY 340
Query: 773 EVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKE 832
EVDGK+ K+++HRKGATRAFPPGH IPK Y DVGQPVLIPGSMGT SY+LAG +K
Sbjct: 341 EVDGKRKKLVIHRKGATRAFPPGHPEIPKDYMDVGQPVLIPGSMGTGSYILAGVPEGVKS 400
Query: 833 TFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
+ + HGAGR +SR A R +++ +EL +GIY+RA++ V EE P AYK+VD V
Sbjct: 401 WY-TAPHGAGRWMSRSRAKRTKTFNQVLEELAAKGIYIRASNRATVVEEMPEAYKDVDRV 459
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
+V GI +LVARMRPIGV KG
Sbjct: 460 AQVAHAVGIGRLVARMRPIGVTKG 483
Score = 146 bits (364), Expect = 1e-33
Identities = 85/144 (59%), Positives = 97/144 (67%), Gaps = 10/144 (6%)
Query: 3 VPLKRIDKIRWEIPKFDKR-MRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSI 61
+P +RIDK W IP+ K MRVP VYADD L+EKMK D+TL QAANVA L GI KYSI
Sbjct: 4 LPTRRIDKYVWMIPQDAKPCMRVPAIVYADDFLIEKMKQDKTLLQAANVACLQGIQKYSI 63
Query: 62 VMPDGHQGYGFPIGGVAAFDVNE--GVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELP 119
VMPDGHQGYGFPIGGVAA D+ E GVISPGG+GYDINC G +VL + L EE+
Sbjct: 64 VMPDGHQGYGFPIGGVAAMDIEEENGVISPGGVGYDINC---GVRVLRTN---LTEEEVR 117
Query: 120 EKFK-LQGVKVYNLDEGHNDTSNV 142
K K L +N+ G T V
Sbjct: 118 PKLKDLVDTLYHNVPSGLGSTGKV 141
>gb|AAK41240.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 482
Score = 504 bits (1284), Expect = e-141
Identities = 250/386 (64%), Positives = 304/386 (77%), Gaps = 4/386 (1%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL KDV+P++ QLV+ L +NVPSGVGS+G+V+L + Q+D VL +G WAV
Sbjct: 99 NCGVRLLRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAV 158
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
D G+GW+ED+ +E+ G E ADP VS AKQRGA QLG+LG+GNHFLE+QVVDKIFDP
Sbjct: 159 DKGFGWKEDMNHMEQRGSWELADPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDP 218
Query: 653 EVAKVYGL-FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
++AK G+ EGQV+VMVHTGSRGLGHQVASDYL+IMERA++KY I PDREL +VPF+S
Sbjct: 219 QIAKAIGVDHEGQVMVMVHTGSRGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFES 278
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
EGQ YF AM + ANFAW NRQ+ITHW RESF VF DPE L +SIVYDVAHNI K+EE
Sbjct: 279 REGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEKLDLSIVYDVAHNIAKIEE 338
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAG-TEGAM 830
+ + G++ KV+VHRKGATRAFPPG IP +R++GQ VLIPGSMGTASYV+AG EG
Sbjct: 339 YVIGGERKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEG-- 396
Query: 831 KETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVD 890
+ T+ + HGAGR +SR+AA R Y + + + L +GI VRAA+ RVVAEEAPGAYK+VD
Sbjct: 397 RRTWFTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVD 456
Query: 891 NVVKVVSEAGIAKLVARMRPIGVAKG 916
V KV E IAKLV R+RPIGV KG
Sbjct: 457 RVAKVAHEVKIAKLVMRLRPIGVTKG 482
Score = 120 bits (299), Expect = 5e-26
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 1 MTVPLKRIDKIRWEIPKFDKR-MRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKY 59
M + + R+ W I K + M+VP ++ADDVL+EKMK D TL QA NVA LPG+ +
Sbjct: 1 MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES 60
Query: 60 SIVMPDGHQGYGFPIGGVAAFDVNE-GVISPGGIGYDINC 98
V+PDGHQGYGFPIGG+AA + E GV+SPGGIGYDINC
Sbjct: 61 IYVLPDGHQGYGFPIGGIAATAIEEGGVVSPGGIGYDINC 100
>pir||E72265 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981917|gb|AAD36428.1|AE001789_13 (AE001789)
conserved hypothetical protein [Thermotoga maritima]
Length = 474
Score = 427 bits (1086), Expect = e-118
Identities = 203/384 (52%), Positives = 290/384 (74%), Gaps = 3/384 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL++T+LT +DV+ R++ LV+ +++ VP+GVGS G + L + VLV+GA+WAV
Sbjct: 94 NCGVRLMKTDLTYEDVKDRMRSLVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAV 153
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
+GYG EEDLER+E+GG++ ADP VS+ A +RG+ +LG+LG+GNHF+EVQ+V +I+D
Sbjct: 154 KSGYGLEEDLERIEDGGKIHPADPSYVSEEAFERGSDELGTLGAGNHFVEVQMVQEIYDE 213
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
E+A+ +GL G + VM+H+GSRG GHQVA+DY+R+M ++++ PD++L++ PF+
Sbjct: 214 ELAEFFGLEIGTITVMIHSGSRGFGHQVATDYIRLMRDNLKEHNKNLPDKQLINAPFEHP 273
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEH 772
GQ Y+SAM AAN+A+ANR+++ H VR++F +VF +D + ++YDVAHNI KVEE+
Sbjct: 274 LGQAYYSAMNCAANYAFANREILGHLVRKAFWKVFGRDTR---VDLIYDVAHNIAKVEEY 330
Query: 773 EVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKE 832
EVDGK+ K++VHRKGATR+ PG E +P IYR+VGQPV+IPG MGTASY+L GT+ A ++
Sbjct: 331 EVDGKRRKLVVHRKGATRSLGPGSEKVPSIYREVGQPVIIPGDMGTASYLLVGTKKAEEK 390
Query: 833 TFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
TFGST HGAGRVL R AA ++ + EL + I V + S + + EEAP YK+VD V
Sbjct: 391 TFGSTAHGAGRVLGRSAALKKLDYREVLDELAEKNIVVMSKSKKTLVEEAPEVYKDVDRV 450
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
V++V E GI++ VARM P+GV KG
Sbjct: 451 VQIVHEIGISRKVARMIPLGVVKG 474
Score = 109 bits (269), Expect = 2e-22
Identities = 66/179 (36%), Positives = 102/179 (56%), Gaps = 16/179 (8%)
Query: 5 LKRIDKIRWEIPKFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVMP 64
++R+DK W+IPK + M+V ++ D + + ++Q NVA LPGI KY++ MP
Sbjct: 3 IERLDKYIWKIPK-EGDMKVDAIIFTDAESVNDPQFREAMKQLMNVATLPGIVKYALAMP 61
Query: 65 DGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPEKFKL 124
D H GYGFPIGGVAAFDV EG+ISPGG+G+DINC G +++ L E++ ++ +
Sbjct: 62 DIHWGYGFPIGGVAAFDVKEGIISPGGVGFDINC---GVRLMKTD---LTYEDVKDRMRS 115
Query: 125 QGVKVYN-LDEGHNDTSNVAF----VAEREVETGEMAVR----VTTESGRIIEGSEDHP 174
+Y + G T ++ + + VE E AV+ + + RI +G + HP
Sbjct: 116 LVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIEDGGKIHP 174
>pir||G70302 conserved hypothetical protein aq_032 - Aquifex aeolicus
>gi|2982790|gb|AAC06415.1| (AE000670) hypothetical
protein [Aquifex aeolicus]
Length = 480
Score = 416 bits (1058), Expect = e-115
Identities = 200/384 (52%), Positives = 276/384 (71%), Gaps = 2/384 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRLI TNL DV PRIK++++ + KNVP+GVGS ++L +Q+ +VLV GA WAV
Sbjct: 99 NCGVRLIATNLKAVDVAPRIKEIMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAV 158
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
++G+G+ EDL+ +E G + ADP+ S A +RG+ +LG++GSGNHF+EVQ V++I++P
Sbjct: 159 EHGFGFPEDLQHIEGFGALPNADPEKASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEP 218
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
E+A+ G++EGQV+VMVH+GSRG GHQV +DYLR+ + KY+I PD +L +PF S
Sbjct: 219 EIAEKLGIWEGQVMVMVHSGSRGFGHQVCTDYLRVALKVRDKYKIKLPDPQLACMPFNSP 278
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEH 772
EGQ YF AM AAAN+A+ANRQ++ + ++ E+ G ++YD AHNIGKVE+H
Sbjct: 279 EGQAYFKAMNAAANYAFANRQILGFKAANTVRKTLGISWEEFGYRLIYDHAHNIGKVEKH 338
Query: 773 EVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKE 832
EVDGKKV+VIVHRKGATRAFPP + +P YR+VGQPV+IPG MG AS++L G +MK
Sbjct: 339 EVDGKKVEVIVHRKGATRAFPPYNPEVPPAYREVGQPVIIPGDMGRASFLLVGQTNSMKM 398
Query: 833 TFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
+FG+ CHGAGRV+SR+ A + + + E + + V A + EE P AYK+V V
Sbjct: 399 SFGTACHGAGRVMSRRQAKKYVK--EVGLEKVIGNLVVVARGKGTIMEEIPQAYKDVTEV 456
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
V+V+ E GIAK VAR++P+G KG
Sbjct: 457 VRVIDELGIAKAVARLKPLGTLKG 480
Score = 96.7 bits (237), Expect = 1e-18
Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 9/140 (6%)
Query: 5 LKRIDKIRWEIPKFD-KRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVM 63
L R K WE+PK + RVP +Y D L E ++ D L QAAN A LPG+ K VM
Sbjct: 7 LIRKGKYIWELPKETIEGQRVPVILYLSDALFELLEED-ALRQAANAATLPGVEKAIYVM 65
Query: 64 PDGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINCLAPGSKVLTEHGYWLKVEELPEKFK 123
PD H GYGFP+GGV A + G+ISPG IGYDINC G +++ + LK ++ + K
Sbjct: 66 PDVHVGYGFPVGGVMATNTETGIISPGSIGYDINC---GVRLIATN---LKAVDVAPRIK 119
Query: 124 -LQGVKVYNLDEGHNDTSNV 142
+ + N+ G TS +
Sbjct: 120 EIMNNMLKNVPAGVGSTSEI 139
>gb|AAF53797.1| (AE003662) CG9987 gene product [Drosophila melanogaster]
Length = 506
Score = 409 bits (1040), Expect = e-113
Identities = 207/385 (53%), Positives = 267/385 (68%), Gaps = 1/385 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL EKDV+P +QL +LF ++P GVGS+G + ++ +++ L G W++
Sbjct: 122 NCGVRLLRTNLYEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSL 181
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM ADP VS RAK+RG PQLG+LG+GNH+ E+QVVD+I+D
Sbjct: 182 REGYVWAEDKEHCEEYGRMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDK 241
Query: 653 EVAKVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
A G+ E GQVVVM+H+GSRG GHQVA+D L ME+A+++ +I DR+L S
Sbjct: 242 WSASKMGIEEKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARINS 301
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
EGQ Y AM AAANFAW NR +T R++F ++F P+DL M ++YDV+HNI KVE
Sbjct: 302 VEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVEN 361
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDGK+ K++VHRKG+TRAFPP H IP Y+ GQPVL+ G+MGT SYVL GTE M+
Sbjct: 362 HMVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQ 421
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFGSTCHGAGR LSR + R + +L GI +R AS ++V EEAP +YK+V +
Sbjct: 422 ETFGSTCHGAGRALSRAKSRRNLDYKDVLDKLDQLGIAIRVASPKLVMEEAPESYKDVTD 481
Query: 892 VVKVVSEAGIAKLVARMRPIGVAKG 916
VV AGI+K +MRPI V KG
Sbjct: 482 VVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 81.9 bits (199), Expect = 3e-14
Identities = 52/134 (38%), Positives = 76/134 (55%), Gaps = 20/134 (14%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADD----VLLEKMKSDRT----------LEQAAN 49
L+++ W I K F M V G Y + ++LE++K+ ++Q AN
Sbjct: 13 LEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIAN 72
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVNE--GVISPGGIGYDINCLAPGSKVLT 107
VA LPGI SI +PD H GYGF IG +AAFD+N+ V+SPGG+G+DINC G ++L
Sbjct: 73 VAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINC---GVRLLR 129
Query: 108 EHGYWLKVEELPEK 121
+ Y V+ + E+
Sbjct: 130 TNLYEKDVQPVKEQ 143
>gi|7657015 hypothetical protein; similar to C. elegens hypothetical 55.2 kD
protein F16A11.2 [Homo sapiens]
>gi|4468866|emb|CAB38260.1| (AL021937) dJ149A16.6 (novel
protein, human ortholog of worm F16A11.2 and bacterial
and archea-bacterial predicted proteins) [Homo sapiens]
>gi|4886425|emb|CAB43357.1| (AL050255) hypothetical
protein [Homo sapiens]
Length = 505
Score = 403 bits (1025), Expect = e-111
Identities = 200/385 (51%), Positives = 265/385 (67%), Gaps = 1/385 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL E DV+P +QL +F ++P GVGS+G + ++ +++ L G W++
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM ADP+ VS RAK+RG PQLG+LG+GNH+ E+QVVD+IF+
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 653 EVAKVYGL-FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
AK G+ +GQV VM+H+GSRGLGHQVA+D L ME+A+++ +I DR+L S
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
EGQ Y M AA N+AW NR +T R++F +VF P+DL + ++YDV+HNI KVE+
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDGK+ ++VHRKG+TRAFPP H I Y+ GQPVLI G+MGT SYVL GTE M
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFG+TCHGAGR LSR + R + +L + GI +R AS ++V EEAP +YKNV +
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD 480
Query: 892 VVKVVSEAGIAKLVARMRPIGVAKG 916
VV +AGI+K ++RPI V KG
Sbjct: 481 VVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 84.3 bits (205), Expect = 6e-15
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 17/111 (15%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDR--------------TLEQAAN 49
L++I+K W I K F M+V G Y +D L + M + ++Q N
Sbjct: 12 LEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGN 71
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN--EGVISPGGIGYDINC 98
VA LPGI SI +PD H GYGF IG +AAFD+N E V+SPGG+G+DINC
Sbjct: 72 VAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINC 122
>gi|11418016 similar to C. elegens hypothetical 55.2 kD protein F16A11.2 [Homo
sapiens]
Length = 530
Score = 403 bits (1025), Expect = e-111
Identities = 200/385 (51%), Positives = 265/385 (67%), Gaps = 1/385 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL E DV+P +QL +F ++P GVGS+G + ++ +++ L G W++
Sbjct: 146 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 205
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM ADP+ VS RAK+RG PQLG+LG+GNH+ E+QVVD+IF+
Sbjct: 206 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 265
Query: 653 EVAKVYGL-FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
AK G+ +GQV VM+H+GSRGLGHQVA+D L ME+A+++ +I DR+L S
Sbjct: 266 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 325
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
EGQ Y M AA N+AW NR +T R++F +VF P+DL + ++YDV+HNI KVE+
Sbjct: 326 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 385
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDGK+ ++VHRKG+TRAFPP H I Y+ GQPVLI G+MGT SYVL GTE M
Sbjct: 386 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 445
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFG+TCHGAGR LSR + R + +L + GI +R AS ++V EEAP +YKNV +
Sbjct: 446 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD 505
Query: 892 VVKVVSEAGIAKLVARMRPIGVAKG 916
VV +AGI+K ++RPI V KG
Sbjct: 506 VVNTCHDAGISKKAIKLRPIAVIKG 530
Score = 84.3 bits (205), Expect = 6e-15
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 17/111 (15%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDR--------------TLEQAAN 49
L++I+K W I K F M+V G Y +D L + M + ++Q N
Sbjct: 37 LEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGN 96
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN--EGVISPGGIGYDINC 98
VA LPGI SI +PD H GYGF IG +AAFD+N E V+SPGG+G+DINC
Sbjct: 97 VAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINC 147
>sp|P90838|YT6J_CAEEL HYPOTHETICAL 55.2 KD PROTEIN F16A11.2 IN CHROMOSOME I
>gi|6435496|emb|CAB04121.2| (Z81505) Similarity to
Metanococcus hypothetical protein 0682 (TR:Q58095),
contains similarity to Pfam domain: PF01139
(Uncharacterized protein family UPF0027), Score=1268.2,
E-value=0, N=1 [Caenorhabditis elegans]
Length = 505
Score = 398 bits (1012), Expect = e-109
Identities = 202/385 (52%), Positives = 261/385 (67%), Gaps = 1/385 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL E++V+P +QL +LF ++P GVGS+G + + + + + L G W +
Sbjct: 121 NCGVRLLRTNLFEENVKPLKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTL 180
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM AD VS RAK+RG PQLG+LG+GNH+ EVQVVD+I+D
Sbjct: 181 REGYSWAEDKEHCEEYGRMLQADASKVSLRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDK 240
Query: 653 EVAKVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
A G+ E GQVVVM+H GSRGLGHQVA+D L ME+A+ + I D++L S
Sbjct: 241 HAASTMGIDEEGQVVVMLHCGSRGLGHQVATDSLVEMEKAMARDGIVVNDKQLACARINS 300
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
EG+ YFS M AAANFAW NR IT VR +FQ+ F +D+ M ++YDV+HN+ K+EE
Sbjct: 301 VEGKNYFSGMAAAANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEE 360
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDG+ ++ VHRKGATRAFP H IP Y+ +GQPVLI GSMGT SYVL GTE +
Sbjct: 361 HMVDGRPRQLCVHRKGATRAFPAHHPLIPVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLV 420
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFG+TCHGAGR LSR + R D + +L + I +R AS +++ EEAP +YKNV +
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRTITWDSVIDDLKKKEISIRIASPKLIMEEAPESYKNVTD 480
Query: 892 VVKVVSEAGIAKLVARMRPIGVAKG 916
VV AGI+K ++RPI V KG
Sbjct: 481 VVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 82.7 bits (201), Expect = 2e-14
Identities = 63/186 (33%), Positives = 90/186 (47%), Gaps = 22/186 (11%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDR--------------TLEQAAN 49
+ R+ ++ I K F M V GR Y ++ L + M + + Q AN
Sbjct: 12 IDRLTDTKFRIKKGFVPNMNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGFLPAVRQIAN 71
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN--EGVISPGGIGYDINCLAPGSKVLT 107
VA LPGI +SI +PD H GYGF IG +AAFDV E VISPGG+G+DINC G ++L
Sbjct: 72 VASLPGIVGHSIGLPDIHSGYGFSIGNIAAFDVGNPESVISPGGVGFDINC---GVRLLR 128
Query: 108 EHGYWLKVEELPEKFKLQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRII 167
+ + V+ L E +L ++ G + +A VE EM + T G
Sbjct: 129 TNLFEENVKPLKE--QLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSW 186
Query: 168 EGSEDH 173
++H
Sbjct: 187 AEDKEH 192
>gb|AAF29081.1|AF161466_1 (AF161466) HSPC117 [Homo sapiens]
Length = 505
Score = 398 bits (1011), Expect = e-109
Identities = 199/385 (51%), Positives = 264/385 (67%), Gaps = 1/385 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL E DV+P +QL +F ++P GVGS+G + ++ +++ L G W++
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM ADP+ VS RAK+RG PQLG+LG+GNH+ E+QVVD+IF+
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 653 EVAKVYGL-FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
AK G+ +GQV VM+H+GSRGLGHQVA+D L ME+A+++ +I DR+L S
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLALSSNAS 300
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
E Q Y M AA N+AW NR +T R++F +VF P+DL + ++YDV+HNI KVE+
Sbjct: 301 PEVQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDGK+ ++VHRKG+TRAFPP H I Y+ GQPVLI G+MGT SYVL GTE M
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFG+TCHGAGR LSR + R + +L + GI +R AS ++V EEAP +YKNV +
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD 480
Query: 892 VVKVVSEAGIAKLVARMRPIGVAKG 916
VV +AGI+K ++RPI V KG
Sbjct: 481 VVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 84.3 bits (205), Expect = 6e-15
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 17/111 (15%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDR--------------TLEQAAN 49
L++I+K W I K F M+V G Y +D L + M + ++Q N
Sbjct: 12 LEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGN 71
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN--EGVISPGGIGYDINC 98
VA LPGI SI +PD H GYGF IG +AAFD+N E V+SPGG+G+DINC
Sbjct: 72 VAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINC 122
>gb|AAF67477.1|AF155658_1 (AF155658) putative 55 kDa protein [Homo sapiens]
Length = 505
Score = 397 bits (1009), Expect = e-109
Identities = 199/385 (51%), Positives = 263/385 (67%), Gaps = 1/385 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL E DV+P +QL +F ++P GVGS+G + ++ +++ L DG +
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALGDGGGLVL 180
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM ADP+ VS RAK+RG PQLG+LG+GNH+ E+QVVD+IF+
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 653 EVAKVYGL-FEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
AK G+ +GQV VM+H+GSRGLGHQVA+D L ME+A+++ +I DR+L S
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
E Q Y M AA N+AW NR +T R++F +VF P+DL + ++YDV+HNI KVE+
Sbjct: 301 PEVQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDGK+ ++VHRKG+TRAFPP H I Y+ GQPVLI G+MGT SYVL GTE M
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFG+TCHGAGR LSR + R + +L + GI +R AS ++V EEAP +YKNV +
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD 480
Query: 892 VVKVVSEAGIAKLVARMRPIGVAKG 916
VV +AGI+K ++RPI V KG
Sbjct: 481 VVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 84.3 bits (205), Expect = 6e-15
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 17/111 (15%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDR--------------TLEQAAN 49
L++I+K W I K F M+V G Y +D L + M + ++Q N
Sbjct: 12 LEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGN 71
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN--EGVISPGGIGYDINC 98
VA LPGI SI +PD H GYGF IG +AAFD+N E V+SPGG+G+DINC
Sbjct: 72 VAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINC 122
>pir||T21006 hypothetical protein F16A11.2 - Caenorhabditis elegans
Length = 763
Score = 379 bits (963), Expect = e-104
Identities = 192/362 (53%), Positives = 248/362 (68%), Gaps = 1/362 (0%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVRL+RTNL E++V+P +QL +LF ++P GVGS+G + + + + + L G W +
Sbjct: 121 NCGVRLLRTNLFEENVKPLKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTL 180
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
GY W ED E EE GRM AD VS RAK+RG PQLG+LG+GNH+ EVQVVD+I+D
Sbjct: 181 REGYSWAEDKEHCEEYGRMLQADASKVSLRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDK 240
Query: 653 EVAKVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQS 711
A G+ E GQVVVM+H GSRGLGHQVA+D L ME+A+ + I D++L S
Sbjct: 241 HAASTMGIDEEGQVVVMLHCGSRGLGHQVATDSLVEMEKAMARDGIVVNDKQLACARINS 300
Query: 712 EEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEE 771
EG+ YFS M AAANFAW NR IT VR +FQ+ F +D+ M ++YDV+HN+ K+EE
Sbjct: 301 VEGKNYFSGMAAAANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEE 360
Query: 772 HEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMK 831
H VDG+ ++ VHRKGATRAFP H IP Y+ +GQPVLI GSMGT SYVL GTE +
Sbjct: 361 HMVDGRPRQLCVHRKGATRAFPAHHPLIPVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLV 420
Query: 832 ETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDN 891
ETFG+TCHGAGR LSR + R D + +L + I +R AS +++ EEAP +YKNV +
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRTITWDSVIDDLKKKEISIRIASPKLIMEEAPESYKNVTD 480
Query: 892 VV 893
VV
Sbjct: 481 VV 482
Score = 82.7 bits (201), Expect = 2e-14
Identities = 63/186 (33%), Positives = 90/186 (47%), Gaps = 22/186 (11%)
Query: 5 LKRIDKIRWEIPK-FDKRMRVPGRVYADDVLLEKMKSDR--------------TLEQAAN 49
+ R+ ++ I K F M V GR Y ++ L + M + + Q AN
Sbjct: 12 IDRLTDTKFRIKKGFVPNMNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGFLPAVRQIAN 71
Query: 50 VAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN--EGVISPGGIGYDINCLAPGSKVLT 107
VA LPGI +SI +PD H GYGF IG +AAFDV E VISPGG+G+DINC G ++L
Sbjct: 72 VASLPGIVGHSIGLPDIHSGYGFSIGNIAAFDVGNPESVISPGGVGFDINC---GVRLLR 128
Query: 108 EHGYWLKVEELPEKFKLQGVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRII 167
+ + V+ L E +L ++ G + +A VE EM + T G
Sbjct: 129 TNLFEENVKPLKE--QLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSW 186
Query: 168 EGSEDH 173
++H
Sbjct: 187 AEDKEH 192
>gb|AAG19760.1| (AE005061) Vng1454c [Halobacterium sp. NRC-1]
Length = 500
Score = 361 bits (917), Expect = 2e-98
Identities = 194/399 (48%), Positives = 253/399 (62%), Gaps = 15/399 (3%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGVR++ T LT DV+ R LVD L+ VP G+G G +D L G W V
Sbjct: 102 NCGVRMLTTTLTYDDVKGREAALVDALYDAVPCGLGGGGVHDGTHADLDAALERGIDWCV 161
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
+ GY D E+ G+ AD DAVS++A+ RGA Q+GSLGSGNHFLEVQ V ++D
Sbjct: 162 EEGYAVPADRRHCEDEGQRLDADLDAVSKKARDRGASQMGSLGSGNHFLEVQRVTDVYDD 221
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
+ A +GL E QVVV++H GSRGLGHQ+ SDYLR +E+ + P+++L + P SE
Sbjct: 222 DTAAAFGLAEDQVVVLIHCGSRGLGHQICSDYLRRIEQEHPDFLASLPNKDLAAAPAGSE 281
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVF-RQDPEDLGMSIVYDVAHNIGKVEE 771
Y+ AM AA NFAW NRQ+ITH VRE+F +VF D E LGM ++YDV+HNI K E
Sbjct: 282 LAASYYGAMCAAINFAWVNRQLITHAVRETFADVFDAPDWEALGMDLLYDVSHNIAKRET 341
Query: 772 HEV-----------DGKKV--KVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGT 818
H V DG++V ++ VHRKGATRAFP GH +P YR+VGQPV+IPGSMG
Sbjct: 342 HAVVETEDGYSLAGDGERVERELFVHRKGATRAFPAGHPEVPAAYREVGQPVIIPGSMGA 401
Query: 819 ASYVLAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQEL-LNRGIYVRAASMRV 877
SYVL G ++ TFGST HGAGR++SR A +Y+G ++ L + I+V+AAS
Sbjct: 402 GSYVLRGGSQSLGRTFGSTAHGAGRLMSRTQAKDEYQGGDVQDALEADDDIHVKAASGAT 461
Query: 878 VAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 916
+AEEAPG YK++D+VV V + G+ V R P+ KG
Sbjct: 462 IAEEAPGVYKDIDDVVDVSAGLGVGDPVVRTYPVCNVKG 500
Score = 101 bits (250), Expect = 3e-20
Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
Query: 24 VPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVN 83
VP RV A+ LL ++ +D TL Q NVA +PG ++ MPDGHQGYGFP+GGVAAFD
Sbjct: 29 VPARVLANRSLLAQISTDNTLTQLRNVAGMPGAVAPALCMPDGHQGYGFPVGGVAAFDAE 88
Query: 84 EGVISPGGIGYDINCLAPGSKVLT 107
+G ISPGG+G+DINC G ++LT
Sbjct: 89 DGCISPGGVGFDINC---GVRMLT 109
>emb|CAC11424.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 466
Score = 353 bits (897), Expect = 4e-96
Identities = 179/384 (46%), Positives = 259/384 (66%), Gaps = 11/384 (2%)
Query: 533 NCGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAV 592
NCGV L+ T ++ + P+IK++ D LF +PSG+ S+ +++ + ++++L G KWA
Sbjct: 94 NCGVALVSTGISFDEFMPKIKEVTDDLFIEIPSGLTSRKGLKVSSSDLNEILRSGLKWAY 153
Query: 593 DNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDP 652
++ +D++ E+ G +E + + VS+ A+QRG Q+G+LG+GNHFLEVQ V +IFD
Sbjct: 154 EHDLATRDDMDHTEDHGSIENSGEN-VSKAAQQRGMSQIGTLGAGNHFLEVQKVSQIFDY 212
Query: 653 EVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSE 712
++A +G+ +V VMVHTGSRGLGHQVA+DY+R++ A Y + D EL+S P +S
Sbjct: 213 DLAGKFGIKMNEVTVMVHTGSRGLGHQVATDYIRMLREA--DYSVKTSDPELISAPVRSP 270
Query: 713 EGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEH 772
G++Y AM++AANFA+ NRQ+ + +R F++ F P ++Y +AHNI K E H
Sbjct: 271 IGEKYIDAMRSAANFAFVNRQIAIYRIRSVFEKHFGVTPR-----LIYSLAHNIAKEENH 325
Query: 773 EVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKE 832
VDG+ +KVIVHRKGATRAFP G + P + D G PVLIPGSMGTASYVL G + +
Sbjct: 326 VVDGESMKVIVHRKGATRAFPAGKASSP--FEDTGHPVLIPGSMGTASYVLVGLRDNLDK 383
Query: 833 TFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
+FG+TCHG+GRVLSR A ++Y G + +EL + +Y R A+ +V+ EEAP +YKNVD V
Sbjct: 384 SFGTTCHGSGRVLSRNQAVKKYAG-LVEKELQEKNVYARPATKQVLYEEAPESYKNVDEV 442
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
V V A +AK V +M P+ V KG
Sbjct: 443 VDAVYGASLAKPVVKMIPVSVVKG 466
Score = 110 bits (273), Expect = 6e-23
Identities = 73/198 (36%), Positives = 106/198 (52%), Gaps = 13/198 (6%)
Query: 5 LKRIDKIRWEIPKFDKRMRVPGRVYADDVLLEKMKSDRTLEQAANVAMLPGIYKYSIVMP 64
++RID + I K + M VPG VY+ + L +K + +L+Q NVA LPGI K S MP
Sbjct: 3 VRRIDDYTYMIDK-ENGMNVPGIVYSSEELFKKSVDEGSLKQVMNVAKLPGIIKASYAMP 61
Query: 65 DGHQGYGFPIGGVAAFDVNEGVISPGGIGYDINC-LAPGSKVLTEHGYWLKVEELPEKFK 123
D H GYGFPIGGVAAFD G+ISPGG+GYDINC +A S ++ + K++E+ +
Sbjct: 62 DIHLGYGFPIGGVAAFDAETGIISPGGVGYDINCGVALVSTGISFDEFMPKIKEVTDDLF 121
Query: 124 LQ---------GVKVYNLDEGHNDTSNVAFVAEREVETGEMAVRVTTESGRIIEGSED-H 173
++ G+KV + D S + + E ++ T + + T + G I E+
Sbjct: 122 IEIPSGLTSRKGLKVSSSDLNEILRSGLKWAYEHDLATRD-DMDHTEDHGSIENSGENVS 180
Query: 174 PVLTPEGYVYLGNLKEGN 191
G +G L GN
Sbjct: 181 KAAQQRGMSQIGTLGAGN 198
>pir||T46344 hypothetical protein DKFZp434I1614.1 - human (fragment)
>gi|6807709|emb|CAB70670.1| (AL137272) hypothetical
protein [Homo sapiens]
Length = 197
Score = 214 bits (540), Expect = 3e-54
Identities = 104/196 (53%), Positives = 135/196 (68%)
Query: 721 MKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVK 780
M AA N+AW NR +T R++F +VF P+DL + ++YDV+HNI KVE+H VDGK+
Sbjct: 2 MAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERT 61
Query: 781 VIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCHG 840
++VHRKG+TRAFPP H I Y+ GQPVLI G+MGT SYVL GTE M ETFG+TCHG
Sbjct: 62 LLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHG 121
Query: 841 AGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAG 900
AGR LSR + R + +L + GI +R AS ++V EEAP +YKNV +VV +AG
Sbjct: 122 AGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAG 181
Query: 901 IAKLVARMRPIGVAKG 916
I+K ++RPI V KG
Sbjct: 182 ISKKAIKLRPIAVIKG 197
>sp|P71930|YQ31_MYCTU HYPOTHETICAL 27.9 KDA PROTEIN RV2631 >gi|7477292|pir||C70963
hypothetical protein Rv2631 - Mycobacterium tuberculosis
(strain H37RV) >gi|3242266|emb|CAB02365.1| (Z80225)
hypothetical protein Rv2631 [Mycobacterium tuberculosis]
Length = 265
Score = 204 bits (513), Expect = 4e-51
Identities = 105/203 (51%), Positives = 141/203 (68%), Gaps = 2/203 (0%)
Query: 533 NCGVRL-IRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRL-HWTQIDDVLVDGAKW 590
+CGVRL + L ++++PR+ ++D L + +P GVG+ G RL + +VL GA++
Sbjct: 62 SCGVRLLVGEGLDREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARF 121
Query: 591 AVDNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIF 650
AV+ G+G DLER E+GG M GAD +S RA QRG Q+GSLGSGNHFLEVQ VD+++
Sbjct: 122 AVEQGHGVALDLERCEDGGVMTGADAAKISDRALQRGLGQIGSLGSGNHFLEVQAVDRVY 181
Query: 651 DPEVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQ 710
DP A GL EG V VM+HTGSRGLGHQ+ +D++R ME+A+ +Y I PDR+L VP
Sbjct: 182 DPVAAAPMGLAEGTVCVMIHTGSRGLGHQICTDHVRQMEQAMGRYGIAVPDRQLACVPVH 241
Query: 711 SEEGQRYFSAMKAAANFAWANRQ 733
S +GQ Y +AM AAAN+ ANRQ
Sbjct: 242 SPDGQAYLAAMAAAANYGRANRQ 264
Score = 81.9 bits (199), Expect = 3e-14
Identities = 46/81 (56%), Positives = 55/81 (67%), Gaps = 6/81 (7%)
Query: 39 KSDRTLEQAANVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDV-NEGVISPGGIGYDIN 97
K+ L Q NVA LPGI + S MPD H GYGFPIGGVAA DV N+GV+SPGG+G+DI+
Sbjct: 3 KATWPLMQVVNVATLPGIVRASYAMPDVHWGYGFPIGGVAATDVDNDGVVSPGGVGFDIS 62
Query: 98 CLAPGSKVLTEHGYWLKVEEL 118
C G ++L G L EEL
Sbjct: 63 C---GVRLLVGEG--LDREEL 78
>pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) subunit A'
(intein-containing) - Methanococcus jannaschii
Length = 1345
Score = 199 bits (502), Expect = 9e-50
Identities = 142/466 (30%), Positives = 238/466 (50%), Gaps = 42/466 (9%)
Query: 98 CLAPGSKVLTEHGYWLKVEELPEKFKLQGVKVYNLDEGHNDTSNVAFVAEREV-ETGEMA 156
C+ + VL + G +K+++L +K+K VKV D+ + ++++ + E G+
Sbjct: 464 CVDGDTTVLLD-GKLIKIKDLEDKWK--DVKVLTSDDLNPKLTSLSKYWKLNADEYGKKI 520
Query: 157 VRVTTESGRIIEGSEDHPVLTPEGYVYLGNLKEGNLVIVYPFEGVEYEERKGVILDEDAF 216
++ TE GR I +EDHP T G G LK G+ VI+YP + +E+ VI+DE+
Sbjct: 521 YKIKTELGREIIATEDHPFYTTNGRKRCGELKVGDEVIIYPNDFPMFEDDNRVIVDEEKI 580
Query: 217 K--------DEDPQVLSFLREKGLVPLRWDDPRIGTIARILGFAFGDGYLGEMGGRLTLT 268
K ++++ L+++ L+PL ++D + +ARI+G GDG L +
Sbjct: 581 KKVINNIGGTYKNKIINELKDRKLIPLTYNDQKASILARIVGHVMGDGSLIINNKNSRVV 640
Query: 269 FYGKEETLRELKKDLERLGISANLYVRESIETTSGHSE------------GKSLSIELRV 316
F G E L+ +K+DL+ LG Y E I+ G +E GK S E+R
Sbjct: 641 FRGDIEDLKTIKEDLKELG-----YDGEEIKLHEGETEITDYNGKKRIIKGKGYSFEVR- 694
Query: 317 TSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVKRNFLAGLFAADGSIVEFK--GN 374
+S + L+ LG G KT+K Y +P WI AP ++K+ FL+ F ++ + + + G
Sbjct: 695 -KKSLCILLKALGCVGGDKTKKMYGIPNWIKTAPKYIKKEFLSAYFGSELTTPKIRNHGT 753
Query: 375 TPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLYEVKS---KKGVTYRLSIVGE 431
+ ++ +K +E+ + F+ D+ ++L EFGIE + + K G ++ +
Sbjct: 754 SFKELSFKIAKIEEIFDE-DRFIKDIKEMLKEFGIELKVRVEEGNLRKDGYKTKVYVASI 812
Query: 432 DSIRTFVERINYEYDPEKKVKGLIAAAYLKLKERIVKEAHEAVKDD---FPTFEEFAKER 488
+ + F RI Y Y +K+ A YL KE+ +K+ + ++ F TF++F KE+
Sbjct: 813 YNHKEFFGRIGYTYANKKETLARYAYEYLLTKEKYLKDRNIKKLENNTKFITFDKFIKEK 872
Query: 489 GYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNC 534
+ GFV EK+V +E K +Y YDI E HNFIANG + NC
Sbjct: 873 CLKNGFVKEKIVSIEETKVDYV--YDITTISETHNFIANGFLTGNC 916
>sp|Q58445|RPA1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT A' >gi|2826359|gb|AAB99046.1|
(U67547) DNA-directed RNA polymerase, subunit A' (rpoA1)
[Methanococcus jannaschii]
Length = 1341
Score = 199 bits (502), Expect = 9e-50
Identities = 142/466 (30%), Positives = 238/466 (50%), Gaps = 42/466 (9%)
Query: 98 CLAPGSKVLTEHGYWLKVEELPEKFKLQGVKVYNLDEGHNDTSNVAFVAEREV-ETGEMA 156
C+ + VL + G +K+++L +K+K VKV D+ + ++++ + E G+
Sbjct: 460 CVDGDTTVLLD-GKLIKIKDLEDKWK--DVKVLTSDDLNPKLTSLSKYWKLNADEYGKKI 516
Query: 157 VRVTTESGRIIEGSEDHPVLTPEGYVYLGNLKEGNLVIVYPFEGVEYEERKGVILDEDAF 216
++ TE GR I +EDHP T G G LK G+ VI+YP + +E+ VI+DE+
Sbjct: 517 YKIKTELGREIIATEDHPFYTTNGRKRCGELKVGDEVIIYPNDFPMFEDDNRVIVDEEKI 576
Query: 217 K--------DEDPQVLSFLREKGLVPLRWDDPRIGTIARILGFAFGDGYLGEMGGRLTLT 268
K ++++ L+++ L+PL ++D + +ARI+G GDG L +
Sbjct: 577 KKVINNIGGTYKNKIINELKDRKLIPLTYNDQKASILARIVGHVMGDGSLIINNKNSRVV 636
Query: 269 FYGKEETLRELKKDLERLGISANLYVRESIETTSGHSE------------GKSLSIELRV 316
F G E L+ +K+DL+ LG Y E I+ G +E GK S E+R
Sbjct: 637 FRGDIEDLKTIKEDLKELG-----YDGEEIKLHEGETEITDYNGKKRIIKGKGYSFEVR- 690
Query: 317 TSRSFALFLEKLGMPRGKKTEKAYRVPGWILEAPLWVKRNFLAGLFAADGSIVEFK--GN 374
+S + L+ LG G KT+K Y +P WI AP ++K+ FL+ F ++ + + + G
Sbjct: 691 -KKSLCILLKALGCVGGDKTKKMYGIPNWIKTAPKYIKKEFLSAYFGSELTTPKIRNHGT 749
Query: 375 TPLPINLTQSKSDELAENLVEFLGDVAKLLAEFGIETTLYEVKS---KKGVTYRLSIVGE 431
+ ++ +K +E+ + F+ D+ ++L EFGIE + + K G ++ +
Sbjct: 750 SFKELSFKIAKIEEIFDE-DRFIKDIKEMLKEFGIELKVRVEEGNLRKDGYKTKVYVASI 808
Query: 432 DSIRTFVERINYEYDPEKKVKGLIAAAYLKLKERIVKEAHEAVKDD---FPTFEEFAKER 488
+ + F RI Y Y +K+ A YL KE+ +K+ + ++ F TF++F KE+
Sbjct: 809 YNHKEFFGRIGYTYANKKETLARYAYEYLLTKEKYLKDRNIKKLENNTKFITFDKFIKEK 868
Query: 489 GYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNC 534
+ GFV EK+V +E K +Y YDI E HNFIANG + NC
Sbjct: 869 CLKNGFVKEKIVSIEETKVDYV--YDITTISETHNFIANGFLTGNC 912
>pir||C75198 activator 1, replication factor c, small chain PAB0068 - Pyrococcus
abyssi (strain Orsay) >gi|5457543|emb|CAB49034.1|
(AJ248283) activator 1, replication factor C, small
subunit [Pyrococcus abyssi]
Length = 1437
Score = 145 bits (362), Expect = 2e-33
Identities = 111/352 (31%), Positives = 162/352 (45%), Gaps = 50/352 (14%)
Query: 222 QVLSFLREKGLVPLRWDDPRIGTIARILGFAFGDGYLGEMGGRLTLTFYGKEETLRELKK 281
++L ++EK LV R+DD + G +AR++GF GDG+L G + F +E L L
Sbjct: 916 RILKEVKEKWLV--RYDDEKAGILARVVGFILGDGHLARNG---RIWFNSSKEELEMLAN 970
Query: 282 DLERLGISANLYVRESIETTSGHSEGKSLSIELRVTSRSFALFLEKLGMPRGKKTEKAYR 341
DL +LG+ + + + + K L V + +F L + G KT+K Y
Sbjct: 971 DLRKLGLKPSEIIERDSSSEIQGRKVKGRIYMLYVDNAAFHALLRFWKVEVGNKTKKGYT 1030
Query: 342 VPGWILEAPLWVKRNFLAGLFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVA 401
VP WI + L+VKR FL GLF ADG+ K I L E E VEFL DVA
Sbjct: 1031 VPEWIKKGNLFVKREFLRGLFGADGTKPCGKRYNFNGIKLEIRAKKESLERTVEFLNDVA 1090
Query: 402 KLLAEFGIETTLYEVKSKKGVTYRLSIVGED-SIRTFVERINYEYDPEKKVKGLIAAAYL 460
LL EF +++ + +K+G RL + D + F+ R+ Y Y K + Y+
Sbjct: 1091 DLLREFDVDSKITVSPTKEGFIIRLIVTPNDANYLNFLTRVGYAY--AKDTYARLVGEYI 1148
Query: 461 KLK------------ERIV--------------------------KEAHEAVKDDFPTFE 482
++K E+ + K + DF TFE
Sbjct: 1149 RIKLAYKNIILPGIAEKAIELATVTNSTYAAKVLGVSRDFVVNRLKGTQIGITRDFMTFE 1208
Query: 483 EFAKERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNC 534
EF KER G+V EKV+K E++ Y YD+ + H+FI+NG+V HNC
Sbjct: 1209 EFMKER-VLNGYVIEKVIKKEKL--GYLDVYDVTCARD-HSFISNGLVSHNC 1256
>pir||E64477 replication factor C homolog - Methanococcus jannaschii
>gi|1592072|gb|AAB99433.1| (U67583) activator 1
(replication factor C), 35 KD subunit [Methanococcus
jannaschii]
Length = 1847
Score = 144 bits (360), Expect = 4e-33
Identities = 109/349 (31%), Positives = 168/349 (47%), Gaps = 48/349 (13%)
Query: 227 LREKGLVPLRWDDPRIGTIARILGFAFGDGYLGEMG-GRLTLTFYGKEETLRELKKDLER 285
++E G + +DD + G AR+LGF GDG+L + GR+ +T E L +KKDLE+
Sbjct: 1327 IKELGWDEITYDDEKAGIFARLLGFIIGDGHLSKSKEGRILITATINE--LEGIKKDLEK 1384
Query: 286 LGISANLYVRESIETTSGHSEGKSLSIELRVTSRSFALFLEKLGMPRGKKTEKAYRVPGW 345
LGI A+ + + IE E K + + + +++F L L G+ G KT Y +P W
Sbjct: 1385 LGIKASNIIEKDIEHKLDGREIKGKTSFIYINNKAFYLLLNFWGVEIGNKTINGYNIPKW 1444
Query: 346 ILEAPLWVKRNFLAGLFAADGSIVEFKGNTPLPINLTQSKSDELAENLVEFLGDVAKLLA 405
I +VKR FL GLF ADG+ K I L + + +EF +V K+L
Sbjct: 1445 IKYGNKFVKREFLRGLFGADGTKPYIKKYNINGIKLGIRVENISKDKTLEFFEEVKKMLE 1504
Query: 406 EFGIETTLYEVK-SKKGVTYRLSIVGEDSIRTFVERINYEYDPEKKVKGLIAAAYLKLKE 464
EF +E+ + K K +T + + ++ RI+Y Y+ + + + YL++KE
Sbjct: 1505 EFEVESYIKVSKIDNKNLTELIVKANNKNYLKYLSRISYAYEKDNFAR--LVGEYLRIKE 1562
Query: 465 R----IVKE-AHEAVKD----------------------------------DFPTFEEFA 485
I+KE A A+K+ +F TFEEF
Sbjct: 1563 AYKDIILKEIAENALKEADGEKSLRELARKYNVPVDFIINQLKGKDIGLPRNFMTFEEFL 1622
Query: 486 KERGYEGGFVAEKVVKVERVKPEYTKFYDIGVYHEAHNFIANGIVVHNC 534
KE+ +G +V+E+++K E + Y YDI H+ +FIANG V HNC
Sbjct: 1623 KEKVVDGKYVSERIIKKECI--GYRDVYDI-TCHKDPSFIANGFVSHNC 1668
>pir||T36119 hypothetical protein SCE15.16c - Streptomyces coelicolor
>gi|4678913|emb|CAB41285.1| (AL049707) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 397
Score = 117 bits (290), Expect = 6e-25
Identities = 106/383 (27%), Positives = 178/383 (45%), Gaps = 62/383 (16%)
Query: 534 CGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVD 593
CG+ ++T+LT D+ + +L + + +P G G D L G +
Sbjct: 77 CGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMH----------DSPLEPGRFHGLA 126
Query: 594 NGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPE 653
G GW++ GR +G +AV R +R Q+G+LG GNHF+EV
Sbjct: 127 TG-GWDDFW------GRFDGV-AEAVKFR-HERAGKQMGTLGGGNHFVEVCTDT------ 171
Query: 654 VAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEE 713
G V +M+H+GSR +G ++A ++ + ++ + DR+L + +
Sbjct: 172 --------TGSVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQGL--VDRDLAVFVADTPQ 221
Query: 714 GQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHE 773
Y + + A +A NR ++ +++ ++ F++ I HN V E
Sbjct: 222 MAAYRNDLFWAQEYAKYNRTLMMALLKDVVRKEFKKAKPIFEQEI--SAHHNY--VAEER 277
Query: 774 VDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKET 833
DG + ++V RKGA RA G +IPGSMGT SY++ G A ++
Sbjct: 278 YDG--MDLLVTRKGAIRA-------------GSGDFGIIPGSMGTGSYIVKGLGNA--KS 320
Query: 834 FGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVV 893
F S HGAGR +SR AA R++ + ++ RG+ R S V +E PGAYK +D V+
Sbjct: 321 FNSASHGAGRRMSRNAAKRRFSTKDLEEQ--TRGVECRKDS--GVVDEIPGAYKPIDQVI 376
Query: 894 KVVSEAGIAKLVARMRPIGVAKG 916
+ + ++VA+++ + KG
Sbjct: 377 D--QQRDLVEVVAKLKQVVCVKG 397
>pir||D75521 rtcB protein - Deinococcus radiodurans (strain R1)
>gi|6458110|gb|AAF10007.1|AE001902_7 (AE001902) rtcB
protein [Deinococcus radiodurans]
Length = 470
Score = 113 bits (281), Expect = 7e-24
Identities = 101/324 (31%), Positives = 154/324 (47%), Gaps = 53/324 (16%)
Query: 595 GYGWEEDLERLEEGGRMEGA-DPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKI-FDP 652
G G+E+ +RL+ E D + + + A Q+GS GSGNHF+E DP
Sbjct: 180 GVGFEKR-DRLDHPVLAEATWDEQPLLRHLFDKAAGQIGSSGSGNHFVEFGTFTLAQADP 238
Query: 653 EVAKVYGLFEGQ-VVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWP--DRE---LVS 706
++ GL G+ + V+ H+GSRG G QVA + + +R WP D+E L
Sbjct: 239 QLE---GLDPGEYLAVLSHSGSRGFGAQVAGHFTNLAQRL-------WPALDKEAQKLAW 288
Query: 707 VPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNI 766
+P SE GQ Y+ AM A +A AN + I + + E ++ +HN+
Sbjct: 289 LPLDSEAGQAYWQAMNLAGRYALANHEQIHARLARALGEKPLLRAQN---------SHNL 339
Query: 767 GKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGT 826
+ +V+G+++ IVHRKGAT A + GQ LIPGSM Y++ G
Sbjct: 340 AW--KQQVNGQEL--IVHRKGATPA-------------EAGQLGLIPGSMADPGYLVRGR 382
Query: 827 EGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAY 886
E S HGAGR L RKAA R ++ L +RG+ + + +EAP AY
Sbjct: 383 GNP--EALASASHGAGRQLGRKAAERSLAKKDVQAYLKDRGVTLIGGGI----DEAPQAY 436
Query: 887 KNVDNVVKVVSEAGIAKLVARMRP 910
K +++V + + + ++ RP
Sbjct: 437 KRIEDV--IARQRDLVDVLGEFRP 458
>pir||F82963 hypothetical protein PA5471 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951803|gb|AAG08856.1|AE004959_12
(AE004959) hypothetical protein [Pseudomonas aeruginosa]
Length = 379
Score = 113 bits (279), Expect = 1e-23
Identities = 91/284 (32%), Positives = 136/284 (47%), Gaps = 47/284 (16%)
Query: 631 LGSLGSGNHFLEVQVVDKIFDPEVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMER 690
LG++G GNHF E+Q V+ +FD GL ++ ++VH+GSRGLG + +++ +
Sbjct: 129 LGTIGGGNHFAELQQVETVFDQAALHALGLDADRLQLLVHSGSRGLGQAILQEHVSLHGH 188
Query: 691 AIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQD 750
A + S E Y + A FA NRQ+I + E R D
Sbjct: 189 A--------------GLLDGSLEASAYLARHADALRFAEGNRQLIARRILER----LRCD 230
Query: 751 PEDLGMSIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPV 810
+L D+ HN+ V +VDG V +HRKGAT P + + +
Sbjct: 231 GLEL-----LDINHNL--VVPAQVDG--VDGWLHRKGAT----PADQGV----------L 267
Query: 811 LIPGSMGTASYVLAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNR---G 867
+IPGS G SY++ A ++ S HGAGR R R+ R + L R G
Sbjct: 268 VIPGSRGDYSYLVEPVPSA--QSLFSLAHGAGRKWQR-GECRERLAARFSVDQLGRTRLG 324
Query: 868 IYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPI 911
V +++ EEAP AYK +D+VV + EAG+ +LVAR++P+
Sbjct: 325 SRVICGDRQLIYEEAPEAYKGIDSVVGALLEAGLLRLVARLKPV 368
>pir||C83072 conserved hypothetical protein PA4583 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950831|gb|AAG07971.1|AE004872_2 (AE004872)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 404
Score = 112 bits (277), Expect = 2e-23
Identities = 105/384 (27%), Positives = 172/384 (44%), Gaps = 60/384 (15%)
Query: 534 CGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVD 593
CG+ RT+L D+ + L + + VP G R R W ++ + A D
Sbjct: 80 CGMIAARTSLVAADLPDNLHGLRSAIEQAVPHGKTFGRRDRGAWHEVPE--------AAD 131
Query: 594 NGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPE 653
W+ R + A D + K LG+LG+GNHF+EV + +
Sbjct: 132 QA--WKALAGRFK-------AITDKHPRLEKTNNRQHLGTLGTGNHFIEVCLDEA----- 177
Query: 654 VAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEE 713
+V M+H+GSRG+G+ + + ++ + + +R++ PD++L S
Sbjct: 178 ---------DRVWFMLHSGSRGVGNAIGNLFIELAKADMRQHIANLPDKDLAYFEEGSRN 228
Query: 714 GQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHE 773
Y A+ A +FA NR ++ H V E+ ++V R+ P + + V D HN + E H
Sbjct: 229 FDDYVEAVGWAQDFARQNRALMMHAVIEAARQVIRK-PFEANLEAV-DCHHNYVQKERHF 286
Query: 774 VDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMKET 833
+V+V RKGA A GQ +IPGSMG S+++ G +E
Sbjct: 287 GQ----EVLVTRKGAVSA-------------QKGQLGIIPGSMGAKSFIVRGL--GNQEA 327
Query: 834 FGSTCHGAGRVLSRKAATRQYR-GDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNV 892
F S HGAGR +SR A + + D+ R +V V +E P AYK++D V
Sbjct: 328 FCSCSHGAGRTMSRTKAKKVFSVADQARAT-----AHVECRKDADVIDEIPMAYKDIDRV 382
Query: 893 VKVVSEAGIAKLVARMRPIGVAKG 916
++ E + +++ +R + KG
Sbjct: 383 MEAQRE--LVEVLHTLRQVVCVKG 404
>dbj|BAB05508.1| (AP001513) unknown conserved protein in others [Bacillus
halodurans]
Length = 407
Score = 111 bits (276), Expect = 3e-23
Identities = 109/428 (25%), Positives = 185/428 (42%), Gaps = 105/428 (24%)
Query: 518 YHEAHNFIANGIVVHN-------------CGVRLIRTNLTEKDVRPRIKQLVDTLFKNVP 564
+H+ ++ G+VV+ CG + ++TN+ D++ ++ +++D L +++
Sbjct: 40 HHKGYSQPVGGVVVYRNQISPSGVGYDIACGNKAVKTNVKYVDIKDQLSKIMDELAQSIS 99
Query: 565 SGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEEDLERLEEGGRMEGADPDAVSQRAK 624
GVG R +++ L D + W+V G +E D + AK
Sbjct: 100 FGVGRSNR-----EKVEHDLFDDSDWSVYQEIGKQEH---------------DNLKTLAK 139
Query: 625 QRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGLFEGQVVVMVHTGSRGLGHQVASDY 684
+ QLG++GSGNHF+++ V + G V V H GSRG GH+ AS +
Sbjct: 140 K----QLGTVGSGNHFVDLFVEEA-------------TGDVWVANHFGSRGFGHKTASGF 182
Query: 685 LRIMERAIRKYRIPWPDRELVSVP----FQSEEGQRYFSAMKAAANFAWANRQMITHWVR 740
+ + + K+ + P SE G Y+ AM+ A +A+A R + V
Sbjct: 183 MNLAKGV--KFSDKVKGERMEDAPTLLDLDSEIGDMYYRAMQLAGKYAYAGRDYVIQKVL 240
Query: 741 ESFQEVFRQDPEDLGMSIVYDV--AHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEA 798
+ Q V+ V HN E H + + ++ RKGAT + P
Sbjct: 241 DILQ-----------AEAVFSVHNHHNFAWKETHNGE----EYVIVRKGATPSAP----- 280
Query: 799 IPKIYRDVGQPVLIPGSMGTASYVLAGTEG-AMKETFGSTCHGAGRVLSRKAA------- 850
Q I GSMG S ++ G + ++ F ST HGAGR++SR A
Sbjct: 281 --------NQWGFIGGSMGDISVIVRGVDSEENRDAFYSTVHGAGRIMSRTEAAGKMNWK 332
Query: 851 TRQYRG-----DRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLV 905
TR G D+++Q + G+ +R +E+P YKN+ +V++ + + V
Sbjct: 333 TRTRSGGKITPDQMKQAIKEYGVELRGGG----TDESPFVYKNLADVLEAHKQTLSIEHV 388
Query: 906 ARMRPIGV 913
++PIGV
Sbjct: 389 --LKPIGV 394
>sp|P46850|RTCB_ECOLI RTCB PROTEIN >gi|7466009|pir||H65137 hypothetical 45.1 kD protein
in malT-glpR intergenic region - Escherichia coli
(strain K-12) >gi|2367224|gb|AAC76446.1| (AE000418) orf,
hypothetical protein [Escherichia coli K12]
Length = 408
Score = 111 bits (274), Expect = 5e-23
Identities = 105/390 (26%), Positives = 177/390 (44%), Gaps = 66/390 (16%)
Query: 534 CGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSG--VGSQGRVRLHWTQIDDVLVDGAKWA 591
CG+ +RT LT +D+ + +L + VP G G R + W V VD AKWA
Sbjct: 78 CGMNALRTALTAEDLPENLAELRQAIETAVPHGRTTGRCKRDKGAWEN-PPVNVD-AKWA 135
Query: 592 -VDNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIF 650
++ GY W + LG+LG+GNHF+E+ + +
Sbjct: 136 ELEAGYQWLTQ----------------KYPRFLNTNNYKHLGTLGTGNHFIEICLDES-- 177
Query: 651 DPEVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQ 710
QV +M+H+GSRG+G+ + + ++ + ++ +++ P R+L
Sbjct: 178 ------------DQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEG 225
Query: 711 SEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFR---QDPEDLGMSIVYDVAHNIG 767
+E Y A+ A FA NR + V + Q + + + P+ L M + + HN
Sbjct: 226 TEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEI-NCHHNYV 284
Query: 768 KVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTE 827
+ E+H + ++ V RKGA A GQ +IPGSMG S+++ G
Sbjct: 285 QKEQHFGE----EIYVTRKGAVSA-------------RAGQYGIIPGSMGAKSFIVRGL- 326
Query: 828 GAMKETFGSTCHGAGRVLSRKAATRQYR-GDRIRQELLNRGIYVRAASMRVVAEEAPGAY 886
+E+F S HGAGRV+SR A + + D+IR +V V +E P AY
Sbjct: 327 -GNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRAT-----AHVECRKDAEVIDEIPMAY 380
Query: 887 KNVDNVVKVVSEAGIAKLVARMRPIGVAKG 916
K++D V + +++ + +++ +R + KG
Sbjct: 381 KDIDAV--MAAQSDLVEVIYTLRQVVCVKG 408
>gb|AAA58219.1| (U18997) ORF_f408 [Escherichia coli]
Length = 408
Score = 108 bits (267), Expect = 3e-22
Identities = 105/390 (26%), Positives = 180/390 (45%), Gaps = 66/390 (16%)
Query: 534 CGVRLIRTNLTEKDVRPRIKQLVDTLFKNVPSG--VGSQGRVRLHWTQIDDVLVDGAKWA 591
CG+ + T LT +D+ + +L + VP G G R + W V VD AKWA
Sbjct: 78 CGMNALGTALTAEDLPENLAELRQAIETAVPHGRTTGRCKRDKGAWEN-PPVNVD-AKWA 135
Query: 592 -VDNGYGWEEDLERLEEGGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIF 650
++ GY W + P ++ + LG+LG+GNHF+E+ + +
Sbjct: 136 ELEAGYQW------------LTXKYPRFLNTNNYKH----LGTLGTGNHFIEICLDES-- 177
Query: 651 DPEVAKVYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQ 710
QV +M+H+GSRG+G+ + + ++ + ++ +++ P R+L
Sbjct: 178 ------------DQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEG 225
Query: 711 SEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFR---QDPEDLGMSIVYDVAHNIG 767
+E Y A+ A FA NR + V + Q + + + P+ L M + + HN
Sbjct: 226 TEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEI-NCHHNYV 284
Query: 768 KVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTE 827
+ E+H + ++ V RKGA A GQ +IPGSMG S+++ G
Sbjct: 285 QKEQHFGE----EIYVTRKGAVSA-------------RAGQYGIIPGSMGAKSFIVRGL- 326
Query: 828 GAMKETFGSTCHGAGRVLSRKAATRQYR-GDRIRQELLNRGIYVRAASMRVVAEEAPGAY 886
+E+F S HGAGRV+SR A + + D+IR +V V +E P AY
Sbjct: 327 -GNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRAT-----AHVECRKDAEVIDEIPMAY 380
Query: 887 KNVDNVVKVVSEAGIAKLVARMRPIGVAKG 916
K++D V + +++ + +++ +R + KG
Sbjct: 381 KDIDAV--MAAQSDLVEVIYTLRQVVCVKG 408
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351491556
Number of Sequences: 2977
Number of extensions: 16036105
Number of successful extensions: 39082
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 38922
Number of HSP's gapped (non-prelim): 65
length of query: 916
length of database: 189,106,746
effective HSP length: 58
effective length of query: 858
effective length of database: 154,394,500
effective search space: 132470481000
effective search space used: 132470481000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 169 (70.2 bits)