BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0384 (PAB0384) DE:Hypothetical protein
         (491 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75175 hypothetical protein PAB0384 - Pyrococcus abyssi (st...   979  0.0

>pir||D75175 hypothetical protein PAB0384 - Pyrococcus abyssi (strain Orsay)
           >gi|5457993|emb|CAB49483.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 491
           
 Score =  979 bits (2503), Expect = 0.0
 Identities = 491/491 (100%), Positives = 491/491 (100%)

Query: 1   MPLLFKPLLRPEKRVKRFLEEIRSDYVKVRGFLLLRRPPCEVPWKYVEYLLSPLSPSELE 60
           MPLLFKPLLRPEKRVKRFLEEIRSDYVKVRGFLLLRRPPCEVPWKYVEYLLSPLSPSELE
Sbjct: 1   MPLLFKPLLRPEKRVKRFLEEIRSDYVKVRGFLLLRRPPCEVPWKYVEYLLSPLSPSELE 60

Query: 61  KTKLKAFAVVRITDSTEISGGIRSGGFVEVEGSVEPYPCGNMRVINARRISSVEYSKYWE 120
           KTKLKAFAVVRITDSTEISGGIRSGGFVEVEGSVEPYPCGNMRVINARRISSVEYSKYWE
Sbjct: 61  KTKLKAFAVVRITDSTEISGGIRSGGFVEVEGSVEPYPCGNMRVINARRISSVEYSKYWE 120

Query: 121 LKEYELSRREIKSILVSALSAPTEVQDSFLYSLFGSPKVLDNPLGWDEGYSLSIINGKLK 180
           LKEYELSRREIKSILVSALSAPTEVQDSFLYSLFGSPKVLDNPLGWDEGYSLSIINGKLK
Sbjct: 121 LKEYELSRREIKSILVSALSAPTEVQDSFLYSLFGSPKVLDNPLGWDEGYSLSIINGKLK 180

Query: 181 VVKSFAEFYRKFYEMLPRELRLEKETSWEFSDDFLGIDFKVFDPNGGLKYYAPSVKMIRR 240
           VVKSFAEFYRKFYEMLPRELRLEKETSWEFSDDFLGIDFKVFDPNGGLKYYAPSVKMIRR
Sbjct: 181 VVKSFAEFYRKFYEMLPRELRLEKETSWEFSDDFLGIDFKVFDPNGGLKYYAPSVKMIRR 240

Query: 241 SVPIPRWAFNSFKLKRAVYLVPKFSRPEVTDILPSLSETPFIISEPLGFELDEIEKHLSN 300
           SVPIPRWAFNSFKLKRAVYLVPKFSRPEVTDILPSLSETPFIISEPLGFELDEIEKHLSN
Sbjct: 241 SVPIPRWAFNSFKLKRAVYLVPKFSRPEVTDILPSLSETPFIISEPLGFELDEIEKHLSN 300

Query: 301 ILATVFVKRNDLPVLNPVSEEVQKLRLKFEAMLWKKRMEYGEDTIDALLSLDGVFHVEKR 360
           ILATVFVKRNDLPVLNPVSEEVQKLRLKFEAMLWKKRMEYGEDTIDALLSLDGVFHVEKR
Sbjct: 301 ILATVFVKRNDLPVLNPVSEEVQKLRLKFEAMLWKKRMEYGEDTIDALLSLDGVFHVEKR 360

Query: 361 YFLSVNLLGSMGRSTGRVTKSFIFEVVNIDEELIDMWLNEIGKKALQEYVERYKRLYITE 420
           YFLSVNLLGSMGRSTGRVTKSFIFEVVNIDEELIDMWLNEIGKKALQEYVERYKRLYITE
Sbjct: 361 YFLSVNLLGSMGRSTGRVTKSFIFEVVNIDEELIDMWLNEIGKKALQEYVERYKRLYITE 420

Query: 421 DSKVQRVFQLLLDLQSTSISGVISKEEIFEAGKEIGFSESTIAMAIEKLKARGDIYEPRI 480
           DSKVQRVFQLLLDLQSTSISGVISKEEIFEAGKEIGFSESTIAMAIEKLKARGDIYEPRI
Sbjct: 421 DSKVQRVFQLLLDLQSTSISGVISKEEIFEAGKEIGFSESTIAMAIEKLKARGDIYEPRI 480

Query: 481 GFYKVIKGEKS 491
           GFYKVIKGEKS
Sbjct: 481 GFYKVIKGEKS 491


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179998226
Number of Sequences: 2977
Number of extensions: 7792957
Number of successful extensions: 18578
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18577
Number of HSP's gapped (non-prelim): 1
length of query: 491
length of database: 189,106,746
effective HSP length: 57
effective length of query: 434
effective length of database: 154,992,987
effective search space: 67266956358
effective search space used: 67266956358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)