BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0385 (PAB0385) DE:Hypothetical protein
         (117 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75175 hypothetical protein PAB0385 - Pyrococcus abyssi (st...   244  2e-64
pir||A71039 hypothetical protein PH1601 - Pyrococcus horikoshii ...   210  4e-54
sp|Q58372|Y962_METJA HYPOTHETICAL PROTEIN MJ0962 >gi|2128602|pir...   123  7e-28
pir||B69083 conserved hypothetical protein MTH1618 - Methanobact...   108  3e-23
gb|AAG19111.1| (AE005009) Vng0599c [Halobacterium sp. NRC-1]           75  2e-13
gi|11497729 conserved hypothetical protein [Archaeoglobus fulgid...    71  3e-12

>pir||E75175 hypothetical protein PAB0385 - Pyrococcus abyssi (strain Orsay)
           >gi|5457994|emb|CAB49484.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 117
           
 Score =  244 bits (617), Expect = 2e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK 60
           MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK
Sbjct: 1   MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK 60

Query: 61  RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKKD 117
           RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKKD
Sbjct: 61  RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKKD 117


>pir||A71039 hypothetical protein PH1601 - Pyrococcus horikoshii
           >gi|3258030|dbj|BAA30713.1| (AP000006) 120aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 120
           
 Score =  210 bits (530), Expect = 4e-54
 Identities = 95/114 (83%), Positives = 108/114 (94%)

Query: 1   MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK 60
           +K+  WEK+EKKK+AIERIDTLFTLAE+V +YSPDLA+RYVELALEIQKK+KVK+PRKWK
Sbjct: 5   VKRRDWEKKEKKKIAIERIDTLFTLAERVARYSPDLAKRYVELALEIQKKAKVKIPRKWK 64

Query: 61  RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKR 114
           RRYCKRCH FL+PG NARVRLRT RMPHVVITCLECG+IMRYPYLREVK+KRK+
Sbjct: 65  RRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYLREVKQKRKK 118


>sp|Q58372|Y962_METJA HYPOTHETICAL PROTEIN MJ0962 >gi|2128602|pir||B64420 conserved
           hypothetical protein MJ0962 - Methanococcus jannaschii
           >gi|1591626|gb|AAB98964.1| (U67539) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 128
           
 Score =  123 bits (306), Expect = 7e-28
 Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 8   KREKKKVAIERIDTLFTLAEKVVKYSP-DLARRYVELALEIQKKSKVKLPRKWKRRYCKR 66
           +++ KK+A ERID L +LAE+  K    D A+RYV LA  I  K +++ P+KWKRR CK+
Sbjct: 6   EKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKRRICKK 65

Query: 67  CHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRK 115
           C  FL+ G NARVR+++ R PHVVITCLECG I R P +RE KEKR++K
Sbjct: 66  CGTFLLYGRNARVRIKSKRYPHVVITCLECGAIYRIPMIREKKEKRRKK 114


>pir||B69083 conserved hypothetical protein MTH1618 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622743|gb|AAB86091.1| (AE000920) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 140
           
 Score =  108 bits (266), Expect = 3e-23
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 3/103 (2%)

Query: 13  KVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWKRRYCKRCHAFLV 72
           K+A ERID LF +A++    +P  + RY ELA  I  K +V++PR+W+RR+C++C++FL 
Sbjct: 12  KIAEERIDILFRMADREFSANPHRSHRYTELARNIAMKYRVRIPREWRRRFCRKCYSFLK 71

Query: 73  PGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRK 115
           PG N  VR+   +   V   C ECGHIMR+PY+RE K++R+ K
Sbjct: 72  PGANCTVRIADGK---VNFRCHECGHIMRFPYIREKKDRRRNK 111


>gb|AAG19111.1| (AE005009) Vng0599c [Halobacterium sp. NRC-1]
           Length = 93
           
 Score = 75.3 bits (182), Expect = 2e-13
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 14  VAIERIDTLFTLAEKVVKYSPD-LARRYVELALEIQKKSKVKLPRKWKRRYCKRCHAFLV 72
           +A ERID L TLA    +   D  AR YV LA  + +++++ LP  ++R  C  C A LV
Sbjct: 4   IAAERIDRLHTLARAAARTGDDDRAREYVRLARRLAERNRLTLPPAFRRFTCDDCDAVLV 63

Query: 73  PGFNARVRLRTDRMPHVVITCLECGHIMRYPY 104
           PG NARVR R+    HVV+TC +CG   RYPY
Sbjct: 64  PGRNARVRTRSG---HVVVTC-DCGTHARYPY 91


>gi|11497729 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429711|pir||E69263 conserved hypothetical protein
           AF0109 - Archaeoglobus fulgidus
           >gi|2650539|gb|AAB91122.1| (AE001099) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 107
           
 Score = 71.4 bits (172), Expect = 3e-12
 Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 8/110 (7%)

Query: 7   EKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWKRRYCKR 66
           +K+ + ++A ER+  L   AE+      +LARRYVELA +I  + +V++PR+ K  YCK+
Sbjct: 5   DKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKATYCKK 64

Query: 67  CHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKK 116
           C   L P    + R+R  R   V+ITCL CG   R P    ++ KR  +K
Sbjct: 65  C---LYPYKAGKFRVRV-RKSRVIITCLNCGFERRIP----IRPKRVNRK 106


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.138    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42001331
Number of Sequences: 2977
Number of extensions: 1425081
Number of successful extensions: 4457
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4448
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 189,106,746
effective HSP length: 50
effective length of query: 67
effective length of database: 159,182,396
effective search space: 10665220532
effective search space used: 10665220532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)