BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0385 (PAB0385) DE:Hypothetical protein
(117 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75175 hypothetical protein PAB0385 - Pyrococcus abyssi (st... 244 2e-64
pir||A71039 hypothetical protein PH1601 - Pyrococcus horikoshii ... 210 4e-54
sp|Q58372|Y962_METJA HYPOTHETICAL PROTEIN MJ0962 >gi|2128602|pir... 123 7e-28
pir||B69083 conserved hypothetical protein MTH1618 - Methanobact... 108 3e-23
gb|AAG19111.1| (AE005009) Vng0599c [Halobacterium sp. NRC-1] 75 2e-13
gi|11497729 conserved hypothetical protein [Archaeoglobus fulgid... 71 3e-12
>pir||E75175 hypothetical protein PAB0385 - Pyrococcus abyssi (strain Orsay)
>gi|5457994|emb|CAB49484.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 117
Score = 244 bits (617), Expect = 2e-64
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK 60
MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK
Sbjct: 1 MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK 60
Query: 61 RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKKD 117
RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKKD
Sbjct: 61 RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKKD 117
>pir||A71039 hypothetical protein PH1601 - Pyrococcus horikoshii
>gi|3258030|dbj|BAA30713.1| (AP000006) 120aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 120
Score = 210 bits (530), Expect = 4e-54
Identities = 95/114 (83%), Positives = 108/114 (94%)
Query: 1 MKKVSWEKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWK 60
+K+ WEK+EKKK+AIERIDTLFTLAE+V +YSPDLA+RYVELALEIQKK+KVK+PRKWK
Sbjct: 5 VKRRDWEKKEKKKIAIERIDTLFTLAERVARYSPDLAKRYVELALEIQKKAKVKIPRKWK 64
Query: 61 RRYCKRCHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKR 114
RRYCKRCH FL+PG NARVRLRT RMPHVVITCLECG+IMRYPYLREVK+KRK+
Sbjct: 65 RRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYLREVKQKRKK 118
>sp|Q58372|Y962_METJA HYPOTHETICAL PROTEIN MJ0962 >gi|2128602|pir||B64420 conserved
hypothetical protein MJ0962 - Methanococcus jannaschii
>gi|1591626|gb|AAB98964.1| (U67539) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 128
Score = 123 bits (306), Expect = 7e-28
Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 8 KREKKKVAIERIDTLFTLAEKVVKYSP-DLARRYVELALEIQKKSKVKLPRKWKRRYCKR 66
+++ KK+A ERID L +LAE+ K D A+RYV LA I K +++ P+KWKRR CK+
Sbjct: 6 EKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKRRICKK 65
Query: 67 CHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRK 115
C FL+ G NARVR+++ R PHVVITCLECG I R P +RE KEKR++K
Sbjct: 66 CGTFLLYGRNARVRIKSKRYPHVVITCLECGAIYRIPMIREKKEKRRKK 114
>pir||B69083 conserved hypothetical protein MTH1618 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622743|gb|AAB86091.1| (AE000920) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 140
Score = 108 bits (266), Expect = 3e-23
Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 13 KVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWKRRYCKRCHAFLV 72
K+A ERID LF +A++ +P + RY ELA I K +V++PR+W+RR+C++C++FL
Sbjct: 12 KIAEERIDILFRMADREFSANPHRSHRYTELARNIAMKYRVRIPREWRRRFCRKCYSFLK 71
Query: 73 PGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRK 115
PG N VR+ + V C ECGHIMR+PY+RE K++R+ K
Sbjct: 72 PGANCTVRIADGK---VNFRCHECGHIMRFPYIREKKDRRRNK 111
>gb|AAG19111.1| (AE005009) Vng0599c [Halobacterium sp. NRC-1]
Length = 93
Score = 75.3 bits (182), Expect = 2e-13
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 14 VAIERIDTLFTLAEKVVKYSPD-LARRYVELALEIQKKSKVKLPRKWKRRYCKRCHAFLV 72
+A ERID L TLA + D AR YV LA + +++++ LP ++R C C A LV
Sbjct: 4 IAAERIDRLHTLARAAARTGDDDRAREYVRLARRLAERNRLTLPPAFRRFTCDDCDAVLV 63
Query: 73 PGFNARVRLRTDRMPHVVITCLECGHIMRYPY 104
PG NARVR R+ HVV+TC +CG RYPY
Sbjct: 64 PGRNARVRTRSG---HVVVTC-DCGTHARYPY 91
>gi|11497729 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429711|pir||E69263 conserved hypothetical protein
AF0109 - Archaeoglobus fulgidus
>gi|2650539|gb|AAB91122.1| (AE001099) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 107
Score = 71.4 bits (172), Expect = 3e-12
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Query: 7 EKREKKKVAIERIDTLFTLAEKVVKYSPDLARRYVELALEIQKKSKVKLPRKWKRRYCKR 66
+K+ + ++A ER+ L AE+ +LARRYVELA +I + +V++PR+ K YCK+
Sbjct: 5 DKKRESRIARERVFYLIKRAEEWKNIDYELARRYVELARKIAMRYRVRIPRELKATYCKK 64
Query: 67 CHAFLVPGFNARVRLRTDRMPHVVITCLECGHIMRYPYLREVKEKRKRKK 116
C L P + R+R R V+ITCL CG R P ++ KR +K
Sbjct: 65 C---LYPYKAGKFRVRV-RKSRVIITCLNCGFERRIP----IRPKRVNRK 106
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.138 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42001331
Number of Sequences: 2977
Number of extensions: 1425081
Number of successful extensions: 4457
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4448
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 189,106,746
effective HSP length: 50
effective length of query: 67
effective length of database: 159,182,396
effective search space: 10665220532
effective search space used: 10665220532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)