BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0387 (PAB0387) DE:Hypothetical protein
         (130 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75175 hypothetical protein PAB0387 - Pyrococcus abyssi (st...   277  4e-74
pir||G71038 hypothetical protein PH1599 - Pyrococcus horikoshii ...   248  2e-65

>pir||G75175 hypothetical protein PAB0387 - Pyrococcus abyssi (strain Orsay)
           >gi|5457996|emb|CAB49486.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 130
           
 Score =  277 bits (701), Expect = 4e-74
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MNERKKKPIDEFPWQEYDLDEFRKKFPALAKELEEKSGIEIGGIRLDEYQVLEEEEEDKI 60
           MNERKKKPIDEFPWQEYDLDEFRKKFPALAKELEEKSGIEIGGIRLDEYQVLEEEEEDKI
Sbjct: 1   MNERKKKPIDEFPWQEYDLDEFRKKFPALAKELEEKSGIEIGGIRLDEYQVLEEEEEDKI 60

Query: 61  DFSGYNPTVIDFLRRCETEEEALEIINWMEKQGEITPEMAKALRVTLVHKGVRAFGPKKE 120
           DFSGYNPTVIDFLRRCETEEEALEIINWMEKQGEITPEMAKALRVTLVHKGVRAFGPKKE
Sbjct: 61  DFSGYNPTVIDFLRRCETEEEALEIINWMEKQGEITPEMAKALRVTLVHKGVRAFGPKKE 120

Query: 121 WGWYERHGKH 130
           WGWYERHGKH
Sbjct: 121 WGWYERHGKH 130


>pir||G71038 hypothetical protein PH1599 - Pyrococcus horikoshii
           >gi|3258028|dbj|BAA30711.1| (AP000006) 194aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 194
           
 Score =  248 bits (626), Expect = 2e-65
 Identities = 115/131 (87%), Positives = 125/131 (94%), Gaps = 1/131 (0%)

Query: 1   MNERKKKPIDEFPWQEYDLDEFRKKFPALAKELEEKSG-IEIGGIRLDEYQVLEEEEEDK 59
           M ++KKKPIDE PWQEYD++EF++KFPALAKELEE  G +EI GIRLDEYQVLEEEEE+K
Sbjct: 64  MTKKKKKPIDELPWQEYDIEEFKEKFPALAKELEENFGDLEITGIRLDEYQVLEEEEEEK 123

Query: 60  IDFSGYNPTVIDFLRRCETEEEALEIINWMEKQGEITPEMAKALRVTLVHKGVRAFGPKK 119
           IDFSGYNPTVIDFLRRC+TEEEALEIINW+EKQGEITPEMAKALRVTLVHKGVRAFGPKK
Sbjct: 124 IDFSGYNPTVIDFLRRCDTEEEALEIINWLEKQGEITPEMAKALRVTLVHKGVRAFGPKK 183

Query: 120 EWGWYERHGKH 130
           EWGWYERHGKH
Sbjct: 184 EWGWYERHGKH 194


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.138    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54133468
Number of Sequences: 2977
Number of extensions: 2287706
Number of successful extensions: 5840
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5837
Number of HSP's gapped (non-prelim): 2
length of query: 130
length of database: 189,106,746
effective HSP length: 51
effective length of query: 79
effective length of database: 158,583,909
effective search space: 12528128811
effective search space used: 12528128811
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 161 (67.1 bits)