BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0388 539128 539487 120 !not a gene!
         (120 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71038 hypothetical protein PH1597 - Pyrococcus horikoshii ...   115  2e-25

>pir||E71038 hypothetical protein PH1597 - Pyrococcus horikoshii
           >gi|3258026|dbj|BAA30709.1| (AP000006) 100aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 100
           
 Score =  115 bits (285), Expect = 2e-25
 Identities = 64/99 (64%), Positives = 71/99 (71%)

Query: 22  GTSTIRAPFFATFMRTSVSTSYLSLSISGRNSLLIALNPLCVSSTFCFIFALIKVVVMKL 81
           GTS I APFF  FMRTSVSTSYLSLSI+G NSLLIAL PL VS  F  + ++I +VVMKL
Sbjct: 2   GTSKILAPFFIAFMRTSVSTSYLSLSITGTNSLLIALKPLWVSRIFFLVLSVINLVVMKL 61

Query: 82  LSFLTKGLFPAFITLLPITKSASPLIIGAMILGISFGSC 120
           L FL  GLFP  I LLP+TKSA P  +G   L IS G C
Sbjct: 62  LIFLDIGLFPLVIILLPMTKSALPSTMGFTNLYISLGLC 100


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.140    0.404 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35445389
Number of Sequences: 2977
Number of extensions: 1145350
Number of successful extensions: 5235
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5234
Number of HSP's gapped (non-prelim): 1
length of query: 120
length of database: 189,106,746
effective HSP length: 52
effective length of query: 68
effective length of database: 157,985,422
effective search space: 10743008696
effective search space used: 10743008696
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 160 (66.7 bits)