BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0389 (PAB0389) DE:Hypothetical protein
         (174 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75176 hypothetical protein PAB0389 - Pyrococcus abyssi (st...   343  8e-94
pir||C71038 hypothetical protein PH1595 - Pyrococcus horikoshii ...   273  1e-72

>pir||B75176 hypothetical protein PAB0389 - Pyrococcus abyssi (strain Orsay)
           >gi|5457999|emb|CAB49489.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 174
           
 Score =  343 bits (870), Expect = 8e-94
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MDLERALNAFHSMKLKQITPPLSQMPIVEEDSPIVDALKILRTRHHVWVVNNKEDMRLVG 60
           MDLERALNAFHSMKLKQITPPLSQMPIVEEDSPIVDALKILRTRHHVWVVNNKEDMRLVG
Sbjct: 1   MDLERALNAFHSMKLKQITPPLSQMPIVEEDSPIVDALKILRTRHHVWVVNNKEDMRLVG 60

Query: 61  VIRYQDVMEILLPPRRARLGTISSLFKSILGGAQKAGEIMERNVLTIDENVTVLEALEKM 120
           VIRYQDVMEILLPPRRARLGTISSLFKSILGGAQKAGEIMERNVLTIDENVTVLEALEKM
Sbjct: 61  VIRYQDVMEILLPPRRARLGTISSLFKSILGGAQKAGEIMERNVLTIDENVTVLEALEKM 120

Query: 121 NRYRVPILALVDEDGRLKGEVSLRLLITEFLRLMRVGGEEWSRQHGSSSQSESP 174
           NRYRVPILALVDEDGRLKGEVSLRLLITEFLRLMRVGGEEWSRQHGSSSQSESP
Sbjct: 121 NRYRVPILALVDEDGRLKGEVSLRLLITEFLRLMRVGGEEWSRQHGSSSQSESP 174


>pir||C71038 hypothetical protein PH1595 - Pyrococcus horikoshii
           >gi|3258024|dbj|BAA30707.1| (AP000006) 172aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 172
           
 Score =  273 bits (690), Expect = 1e-72
 Identities = 135/170 (79%), Positives = 158/170 (92%), Gaps = 1/170 (0%)

Query: 1   MDLERALNAFHSMKLKQITPPLSQMPIVEEDSPIVDALKILRTRHHVWVVNNKEDMRLVG 60
           M+LERALNAFHSMKL QITPPL+QMPI+EE+S I++ALKILRTRHHVWVVN++++M+LVG
Sbjct: 4   MELERALNAFHSMKLTQITPPLTQMPILEENSSIINALKILRTRHHVWVVNDRKEMKLVG 63

Query: 61  VIRYQDVMEILLPPRRARLGTISSLFKSILGGAQKAGEIMERNVLTIDENVTVLEALEKM 120
           VIRY DV  IL+PP+RARLG+IS LFKSI GGA+K GEIMERNVLTI+E+ T+L+ALEKM
Sbjct: 64  VIRYFDVFYILMPPKRARLGSISPLFKSIFGGAEKVGEIMERNVLTIEEDATILDALEKM 123

Query: 121 NRYRVPILALVDEDGRLKGEVSLRLLITEFLRLMRVGGEEWSRQHGSSSQ 170
            RY+V ILA+VDE+GRLKGEVSLRLLITEFLRL+RVGGEEW RQHGSSSQ
Sbjct: 124 RRYKVGILAVVDEEGRLKGEVSLRLLITEFLRLLRVGGEEW-RQHGSSSQ 172


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.137    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59733565
Number of Sequences: 2977
Number of extensions: 2164033
Number of successful extensions: 5723
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5719
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 189,106,746
effective HSP length: 56
effective length of query: 118
effective length of database: 155,591,474
effective search space: 18359793932
effective search space used: 18359793932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)