BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0392 (PAB0392) DE:transcriptional regulatory protein, AsnC
family
(141 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75176 transcription regulatory protein, asnc Family PAB039... 277 5e-74
pir||H71037 probable transcription regulator - Pyrococcus horiko... 268 2e-71
pir||T46972 transcription regulator lrpA [validated] - Pyrococcu... 261 2e-69
sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN G... 192 1e-48
sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 170 5e-42
gi|11499312 transcriptional regulatory protein, AsnC family [Arc... 121 3e-27
sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 102 2e-21
pir||A75106 transcription regulatory protein, asnc family PAB193... 96 1e-19
gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (... 95 4e-19
pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro... 92 2e-18
pir||B71235 probable transcription regulator - Pyrococcus horiko... 91 4e-18
pir||E71028 probable transcription regulator - Pyrococcus horiko... 91 4e-18
pir||E71176 probable transcription regulator - Pyrococcus horiko... 87 1e-16
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu... 87 1e-16
dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus h... 86 1e-16
sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G6... 84 8e-16
gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobac... 82 3e-15
pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC... 79 2e-14
dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus h... 79 2e-14
sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQEC... 78 6e-14
gi|11498192 transcriptional regulatory protein, AsnC family [Arc... 78 6e-14
pir||G82367 transcription regulator AsnC VC0071 [imported] - Vib... 77 1e-13
sp|Q52710|PUTR_RHOCA PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIV... 73 2e-12
gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus] 72 2e-12
gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC famil... 71 4e-12
pir||S74043 transcription regulator homolog c0107 - Sulfolobus s... 71 4e-12
gb|AAG19512.1| (AE005042) transcription regulator; Trh7 [Halobac... 71 6e-12
sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|... 71 7e-12
pir||B71206 probable leucine-responsive regulatory protein - Pyr... 70 1e-11
pir||C83323 probable transcriptional regulator PA2577 [imported]... 70 1e-11
pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi ... 69 3e-11
pir||D70981 hypothetical protein Rv3291c - Mycobacterium tubercu... 67 8e-11
>pir||E75176 transcription regulatory protein, asnc Family PAB0392 - Pyrococcus
abyssi (strain Orsay) >gi|5458002|emb|CAB49492.1|
(AJ248284) transcriptional regulatory protein, AsnC f
amily [Pyrococcus abyssi]
Length = 141
Score = 277 bits (700), Expect = 5e-74
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL
Sbjct: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN
Sbjct: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
Query: 121 KIGKIDGVTKVCPAIILERLK 141
KIGKIDGVTKVCPAIILERLK
Sbjct: 121 KIGKIDGVTKVCPAIILERLK 141
>pir||H71037 probable transcription regulator - Pyrococcus horikoshii
>gi|3258021|dbj|BAA30704.1| (AP000006) 141aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 141
Score = 268 bits (679), Expect = 2e-71
Identities = 135/141 (95%), Positives = 140/141 (98%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M+DERDKIIL+ILSKDARTPFTEIAK LGISETAVRKRVKALEEKGIIEGYTI+INPKKL
Sbjct: 1 MIDERDKIILEILSKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIRINPKKL 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWA+DGEDLADIISN
Sbjct: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWARDGEDLADIISN 120
Query: 121 KIGKIDGVTKVCPAIILERLK 141
KIGKIDGVTKVCPAIILE+LK
Sbjct: 121 KIGKIDGVTKVCPAIILEKLK 141
>pir||T46972 transcription regulator lrpA [validated] - Pyrococcus furiosus
>gi|4416541|gb|AAD20389.1| (M97860) transcriptional
regulator LrpA [Pyrococcus furiosus]
Length = 141
Score = 261 bits (661), Expect = 2e-69
Identities = 130/141 (92%), Positives = 139/141 (98%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M+DERDKIIL+IL KDARTPFTEIAK LGISETAVRKRVKALEEKGIIEGYTIKINPKKL
Sbjct: 1 MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
GYSLVTITGVDT+PEKLFEVAEKLKE++FV+ELYLSSGDHMIMAVIWAKDGEDLA+IISN
Sbjct: 61 GYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISN 120
Query: 121 KIGKIDGVTKVCPAIILERLK 141
KIGKI+GVTKVCPAIILE+LK
Sbjct: 121 KIGKIEGVTKVCPAIILEKLK 141
>sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GDH 3'REGION
Length = 120
Score = 192 bits (484), Expect = 1e-48
Identities = 96/104 (92%), Positives = 102/104 (97%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M+DERDKIIL+IL KDARTPFTEIAK LGISETAVRKRVKALEEKGIIEGYTIKINPKKL
Sbjct: 1 MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMA 104
GYSLVTITGVDT+PEKLFEVAEKLKE++FV+ELYLSSGDHMIMA
Sbjct: 61 GYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMA 104
>sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0723
>gi|2129220|pir||C64390 probable transcription regulator
- Methanococcus jannaschii >gi|1591440|gb|AAB98719.1|
(U67519) transcriptional regulatory protein, AsnC family
[Methanococcus jannaschii]
Length = 156
Score = 170 bits (427), Expect = 5e-42
Identities = 76/141 (53%), Positives = 114/141 (79%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
++DE+D I++IL +D R +T+IA+ LG SE+++RKRVK LEE+G+I+GYT I+P K+
Sbjct: 16 IMDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKI 75
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
GY++V +TG DT P+K VA++L +F V++++ S+GDHMIM IWAKDG++ +D+I N
Sbjct: 76 GYNVVALTGFDTEPDKFLNVAKELCKFPEVKKVFTSTGDHMIMTEIWAKDGKEFSDLIFN 135
Query: 121 KIGKIDGVTKVCPAIILERLK 141
KIGKI+G+ K+CPAIILE++K
Sbjct: 136 KIGKIEGIKKICPAIILEQMK 156
>gi|11499312 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444087|pir||B69465 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2648831|gb|AAB89528.1| (AE000984) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 138
Score = 121 bits (301), Expect = 3e-27
Identities = 66/140 (47%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE+D I+++L +AR P T IAK L ++E AVRKR+ LE + I GY IN KK+G
Sbjct: 1 MDEKDLKIIELLVSNARIPKTRIAKELNVTEAAVRKRIANLERREEILGYKAIINYKKVG 60
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
S ++TGVD P+KL++V E+LK+ E V+ L+L++GDH IMA I AK ++L++ I K
Sbjct: 61 LS-ASLTGVDVDPDKLWKVVEELKDLESVKSLWLTTGDHTIMAEIIAKSVQELSE-IHQK 118
Query: 122 IGKIDGVTKVCPAIILERLK 141
I +++GV +VCP+II + +K
Sbjct: 119 IAEMEGVKRVCPSIITDIVK 138
>sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0151
>gi|2129315|pir||H64318 transcription regulator homolog
- Methanococcus jannaschii >gi|1498922|gb|AAB98133.1|
(U67472) transcriptional regulator, putative
[Methanococcus jannaschii]
Length = 148
Score = 102 bits (251), Expect = 2e-21
Identities = 58/141 (41%), Positives = 81/141 (57%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M+D D IL IL+ +AR F EI + LGISE VR RVK L EKGII G+ INPK L
Sbjct: 1 MLDRIDLKILRILNGNARKSFREIGRELGISEGTVRNRVKRLTEKGIITGFHASINPKNL 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
G+ +V I G+ +P K+ E KLKE + + ELY ++G++ + + KD E L ++
Sbjct: 61 GFEVVAILGLYIKPSKVEETLNKLKELDEIVELYQTTGEYDAVCIAILKDIESLGKFLAE 120
Query: 121 KIGKIDGVTKVCPAIILERLK 141
KI + V ++L K
Sbjct: 121 KIYPLVNVNGCKVTLVLRTFK 141
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 96.3 bits (236), Expect = 1e-19
Identities = 50/140 (35%), Positives = 84/140 (59%), Gaps = 1/140 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE D+ I+ IL KD + P EI+KI G++E+ + +R+K L E G+I +T +NP+ LG
Sbjct: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
YS++ + + K EVA L ++E + E+Y ++GD+ ++ I K+ E+L + +
Sbjct: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-DV 123
Query: 122 IGKIDGVTKVCPAIILERLK 141
IG I GV I+L+ K
Sbjct: 124 IGSIPGVEGTHTMIVLKTHK 143
>gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (asnC) [Sulfolobus
solfataricus]
Length = 153
Score = 94.8 bits (232), Expect = 4e-19
Identities = 48/140 (34%), Positives = 87/140 (61%), Gaps = 1/140 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D+ DK IL+IL +D+R PF+ +AK+L +SE + R+K L+E G+I+G+ +I+ K+G
Sbjct: 8 LDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIG 67
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
S+V + P+K + ++L E + + E+Y +G++ + + EDLA ++ +K
Sbjct: 68 LSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVL-DK 126
Query: 122 IGKIDGVTKVCPAIILERLK 141
IG +DGVT ++L +K
Sbjct: 127 IGNMDGVTSTYTMLVLRSIK 146
>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
(strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
abyssi]
Length = 147
Score = 92.4 bits (226), Expect = 2e-18
Identities = 49/141 (34%), Positives = 85/141 (59%), Gaps = 1/141 (0%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M+DE DK I+ IL KD+R + EIAK L ++ + R+K LEE G+I+G+T+K+N + +
Sbjct: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
GY L I G+ + +K+ E+ + + + V +Y +G++ I+ + K+ ED+ +
Sbjct: 61 GYDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKG 120
Query: 121 KIGKIDGVTKVCPAIILERLK 141
+ IDGV K ++LE +K
Sbjct: 121 VL-SIDGVEKTNTHVVLEVVK 140
>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
>gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 158
Score = 91.3 bits (223), Expect = 4e-18
Identities = 48/135 (35%), Positives = 77/135 (56%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE D+ IL +L +D R ++EI++ + + E+ VR RV L ++G+I + INP K G
Sbjct: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKAG 71
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
Y +V VD P K+ +V E+L +F V L + +G H I + KD ++L I K
Sbjct: 72 YEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFILEK 131
Query: 122 IGKIDGVTKVCPAII 136
+ KIDG+ +I+
Sbjct: 132 MAKIDGIKSTETSIL 146
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 91.3 bits (223), Expect = 4e-18
Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE DK I+ IL D + P EI+KI G++E+ + +R++ L E G+I+ +T I+P+ LG
Sbjct: 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
YS++ V + K EVA L ++ + E+Y ++GD+ ++ I K+ E+L + + +
Sbjct: 65 YSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFL-DL 123
Query: 122 IGKIDGVTKVCPAIILERLK 141
IG I GV I+L+ K
Sbjct: 124 IGSIPGVEGTHTMIVLKTHK 143
>pir||E71176 probable transcription regulator - Pyrococcus horikoshii
>gi|3258121|dbj|BAA30804.1| (AP000007) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 86.6 bits (211), Expect = 1e-16
Identities = 45/140 (32%), Positives = 84/140 (59%), Gaps = 1/140 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D D+ IL+IL KD+RT + EIAK L ++ + R+K LE+ G+I+ +T+K+N + +G
Sbjct: 6 LDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYESIG 65
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
Y L I G+ + +K+ E+ + + + V +Y +G++ I+ + ++ ED+ +
Sbjct: 66 YDLTAIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFVKGV 125
Query: 122 IGKIDGVTKVCPAIILERLK 141
+ IDGV K ++LE +K
Sbjct: 126 L-SIDGVEKTNTHVVLEIVK 144
>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
(strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
transcriptional regulatory protein [Pyrococcus abyssi]
Length = 158
Score = 86.6 bits (211), Expect = 1e-16
Identities = 45/135 (33%), Positives = 75/135 (55%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE D+ IL +L +D R ++EI++ + + E+ VR RV L +G+I + INP K G
Sbjct: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
Y +V +D P K+ +V E+L + V L + +G H I + +D ++L I K
Sbjct: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Query: 122 IGKIDGVTKVCPAII 136
+ KIDG+ +I+
Sbjct: 132 MAKIDGIRSTETSIL 146
>dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus halodurans]
Length = 149
Score = 86.2 bits (210), Expect = 1e-16
Identities = 46/140 (32%), Positives = 79/140 (55%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D D+ IL++L+++ R + +IAK LG+S A+R+R+ L+E G+IE +++ IN K+G
Sbjct: 3 IDATDQKILELLTENGRMSYVDIAKELGLSRVAIRERIHQLKEAGVIEKFSVVINSDKVG 62
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
+ VD P L +VAE L E V Y +G + + +D + L I+ +
Sbjct: 63 KKVSAFFEVDCEPTSLVKVAETLAENPKVASCYQMTGPSTLHMHVLVEDFDQLEYFINEE 122
Query: 122 IGKIDGVTKVCPAIILERLK 141
+ + G+T+V I+L R K
Sbjct: 123 LYALQGITRVESHILLRRFK 142
>sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G64077 regulatory protein
asnC - Haemophilus influenzae (strain Rd KW20)
>gi|1573550|gb|AAC22221.1| (U32738) transcriptional
regulatory protein (asnC) [Haemophilus influenzae Rd]
Length = 150
Score = 83.9 bits (204), Expect = 8e-16
Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D D+ IL +L+KDARTP+ E+AK G+S + RV+ + + GII+G + I+ +KLG
Sbjct: 4 IDSLDQKILRVLTKDARTPYAEMAKNFGVSPGTIHVRVEKMRQSGIIKGTKVIIDERKLG 63
Query: 62 YSLVTITGVDTRPEKLFE-VAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
Y + G+ + K +E V +KL+ F+ V E Y ++G++ I + +L +++
Sbjct: 64 YDVCCFIGIILKSAKDYEKVIKKLESFDEVVEAYYTTGNYSIFLKVMTHTIAELHSVLAT 123
Query: 121 KIGKIDGV 128
KI ID +
Sbjct: 124 KIQLIDEI 131
>gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobacterium sp. NRC-1]
Length = 149
Score = 81.9 bits (199), Expect = 3e-15
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
VD+ D+ IL L DAR PF+EIA+ + +S V RV LEE G+I GY ++PK +G
Sbjct: 3 VDDTDREILRALQADARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKAVG 62
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
G+ + E ++L E VRE+ L++G+ ++ + A+D + L ++ +
Sbjct: 63 LGTTAFVGLRVEQGREDETLDRLTGIEGVREVNLTTGEWDVILRLVAEDTDHLRALMFEE 122
Query: 122 IGKIDGVTKVCPAIIL 137
I +DG + ++L
Sbjct: 123 IADMDGFARSQTMVVL 138
>pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC - Bacillus
subtilis >gi|1929330|emb|CAB07798.1| (Z93767) similar to
leucine regulatory protein, Lrp and AsnC protein that
regulates expression of asnA gene which encodes
asparagine synthetase A [Bacillus subtilis]
>gi|2636136|emb|CAB15628.1| (Z99122) similar to
transcriptional regulator (Lrp/AsnC family) [Bacillus
subtilis]
Length = 158
Score = 79.2 bits (192), Expect = 2e-14
Identities = 47/142 (33%), Positives = 81/142 (56%), Gaps = 2/142 (1%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
++DE DK IL IL ++ R +T++ K + +S AV+ R+ L E G+IE +T INP K+
Sbjct: 11 VLDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFTAVINPAKI 70
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMI-MAVIWAKDGEDLADIIS 119
G + V+ P+ L EVA KL+E V LY +G + M I+ D +++ + ++
Sbjct: 71 GIHVSVFFNVEVEPQFLEEVALKLEEEPAVTSLYHMTGPSKLHMHGIFTND-QEMEEFLT 129
Query: 120 NKIGKIDGVTKVCPAIILERLK 141
++ + GV V ++++R K
Sbjct: 130 KRLYPLRGVVSVDCQMLIKRYK 151
>dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus halodurans]
Length = 152
Score = 79.2 bits (192), Expect = 2e-14
Identities = 43/140 (30%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D+ D IL +L + + +T+IAK + +SE VR R+ + ++ + E + I ++P K+G
Sbjct: 4 LDDVDMSILQLLQDNGKRSYTDIAKRINVSEGTVRTRINRMLKERVFE-FIIHMDPNKIG 62
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
++ I G+ T+ K +A KL E+ VR + SG H ++ + K+ EDL + ++ +
Sbjct: 63 LNVQAIIGIKTQLGKQETIATKLNEYPEVRFVGAFSGRHDLILQAYFKNNEDLVNFVNKE 122
Query: 122 IGKIDGVTKVCPAIILERLK 141
+ KIDG+ +I L++ K
Sbjct: 123 LSKIDGILAADVSIELKQYK 142
>sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQECE1 regulatory protein
asnC - Escherichia coli >gi|290592|gb|AAA62095.1|
(L10328) regulatory protein [Escherichia coli]
>gi|455179|gb|AAA24252.1| (K00826) 17K protein
[Escherichia coli] >gi|1790182|gb|AAC76766.1| (AE000451)
regulator for asnA, asnC and gidA [Escherichia coli K12]
>gi|223848|prf||1002215B protein 17KD [Escherichia coli]
Length = 152
Score = 77.6 bits (188), Expect = 6e-14
Identities = 43/139 (30%), Positives = 76/139 (53%), Gaps = 1/139 (0%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
++D D+ IL+ L +ART + E+AK G+S + RV+ +++ GII G I ++PK+L
Sbjct: 5 LIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQL 64
Query: 61 GYSLVTITGVDTRPEKLFEVA-EKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIIS 119
GY + G+ + K + A KL+ + V E Y ++G + I + + + L ++
Sbjct: 65 GYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLI 124
Query: 120 NKIGKIDGVTKVCPAIILE 138
NKI ID + I+L+
Sbjct: 125 NKIQTIDEIQSTETLIVLQ 143
>gi|11498192 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444088|pir||H69322 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2650037|gb|AAB90654.1| (AE001064) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 145
Score = 77.6 bits (188), Expect = 6e-14
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE+D +IL L KD+R +E+A++L +S +++ KRVK LE++G+IE YT INP
Sbjct: 1 MDEKDMLILSELVKDSRKTLSELAEMLDMSVSSIHKRVKKLEKEGVIERYTAVINPDVFD 60
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
+ PEK+F +K + V E+Y + G+ ++A + + D + + +I S K
Sbjct: 61 TVTAFLLISAENPEKVF---NNIKAMDNVVEVYKALGNFNMIAKVRSSDLDKIGEITS-K 116
Query: 122 IGKIDGVTKVCPAIILERLK 141
I ++GV V + +RLK
Sbjct: 117 ISAMEGVMMVECIVTTKRLK 136
>pir||G82367 transcription regulator AsnC VC0071 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654467|gb|AAF93249.1|
(AE004098) transcriptional regulator AsnC [Vibrio
cholerae]
Length = 153
Score = 76.9 bits (186), Expect = 1e-13
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE D+ IL IL DARTP+ E+AK +S + R++ ++ II+G + +N KKLG
Sbjct: 7 LDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRIEKMKAADIIQGTEVVVNTKKLG 66
Query: 62 YSLVTITGVDTRPEKLFEVA-EKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
Y + G++ + + A KL + V E Y ++G + I + + E+L ++ +
Sbjct: 67 YDVCCFIGINLNAARDYHSALAKLNALDEVVEAYYTTGAYNIFVKLMCRSIEELQHVLID 126
Query: 121 KIGKIDGVTKVCPAIILE 138
K+ ID V I L+
Sbjct: 127 KLQAIDEVQSTETLISLQ 144
>sp|Q52710|PUTR_RHOCA PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIVATOR
>gi|7469215|pir||T28434 transcription regulator homolog
putR - Rhodobacter capsulatus
>gi|1122428|emb|CAA55141.1| (X78346) proline
dehydrogenase transcriptional activator [Rhodobacter
capsulatus]
Length = 154
Score = 72.6 bits (175), Expect = 2e-12
Identities = 43/141 (30%), Positives = 74/141 (51%), Gaps = 3/141 (2%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
++D D+ IL L +AR P TE+A+ +G+S+T V R++A+EE G+I GY ++P +L
Sbjct: 4 LIDATDRRILHELCANARIPVTELARKVGLSKTPVAARIRAMEEMGLITGYRAMLSPIRL 63
Query: 61 GYSLVTITGV---DTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADI 117
G VT V DTR + L + ++E V E Y+ +G + + + D + I
Sbjct: 64 GLIHVTYVEVRLNDTRQKALEQFNAAVREIPEVEECYMIAGGFDYLLKVRSHDIAEYRKI 123
Query: 118 ISNKIGKIDGVTKVCPAIILE 138
+ K+ + V + +E
Sbjct: 124 MGEKLSALPHVAATSSYVAME 144
>gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]
Length = 142
Score = 72.2 bits (174), Expect = 2e-12
Identities = 46/136 (33%), Positives = 78/136 (56%), Gaps = 3/136 (2%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+DE D IL+IL K+ARTP+T IAK L +SE A+RKR++ L +GII+ +TI+ +
Sbjct: 6 IDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIEYELENEI 65
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
++V + P E+++K+ + V +Y ++GD+ I+ ++ + + I ++
Sbjct: 66 RAIVMVQSTPQIPTP--EISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINRTI-DE 122
Query: 122 IGKIDGVTKVCPAIIL 137
I I GV IIL
Sbjct: 123 IRSIQGVVGTNSTIIL 138
>gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC family) [Sulfolobus
solfataricus]
Length = 155
Score = 71.4 bits (172), Expect = 4e-12
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D+ D+ IL+IL +A+ E++ LGI + VR R+K LE+ II GY I+ LG
Sbjct: 9 LDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLG 68
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEF-EFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
++ + ++T P + +VA+ L E E VR L +G + + +I+ KD I+N
Sbjct: 69 LNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIF-KDDASAHQFIAN 127
Query: 121 KIGKIDGVTKVCPAIILERLK 141
K+ I G+ V + I+ER K
Sbjct: 128 KLYNIKGIKTVSISRIIERYK 148
>pir||S74043 transcription regulator homolog c0107 - Sulfolobus solfataricus
>gi|1707737|emb|CAA69457.1| (Y08256) orf c01007
[Sulfolobus solfataricus]
Length = 155
Score = 71.4 bits (172), Expect = 4e-12
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D+ D+ IL+IL +A+ E++ LGI + VR R+K LE+ II GY I+ LG
Sbjct: 9 LDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLG 68
Query: 62 YSLVTITGVDTRPEKLFEVAEKLKEF-EFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
++ + ++T P + +VA+ L E E VR L +G + + +I+ KD I+N
Sbjct: 69 LNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIF-KDDASAHQFIAN 127
Query: 121 KIGKIDGVTKVCPAIILERLK 141
K+ I G+ V + I+ER K
Sbjct: 128 KLYNIKGIKTVSISRIIERYK 148
>gb|AAG19512.1| (AE005042) transcription regulator; Trh7 [Halobacterium sp. NRC-1]
Length = 75
Score = 71.0 bits (171), Expect = 6e-12
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 67 ITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNKIGKID 126
+ G+D E+ E L+E + V+ LY SSGDHM+MA + A DG+ L D+IS+++ ID
Sbjct: 1 MVGIDVASEQYVEATRTLQELDSVQALYSSSGDHMLMAEVRAADGDALGDVISDEVLAID 60
Query: 127 GVTKVCPAIILERLK 141
GVT P+ + ERLK
Sbjct: 61 GVTAAHPSFLQERLK 75
>sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|pir||F69592 azlBCD
operon transcription repressor azlB - Bacillus subtilis
>gi|1926280|emb|CAA71939.1| (Y11043) transcriptional
regulator [Bacillus subtilis] >gi|1934649|gb|AAB80900.1|
(U93876) regulatory protein YrdG [Bacillus subtilis]
>gi|2635117|emb|CAB14613.1| (Z99117) transcriptional
regulator (Lrp/AsnC family) [Bacillus subtilis]
Length = 157
Score = 70.6 bits (170), Expect = 7e-12
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M+DE DK IL L +DA ++K +G+S +A R K L E GII+ +T ++ KKL
Sbjct: 4 MLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKL 63
Query: 61 GYSLVTITGVDTRP---EKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADI 117
G + + ++ P E + E + +F V+E Y +G H M I AKD E +
Sbjct: 64 GIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRNF 123
Query: 118 ISNKIGKIDGVTKVCPAIILERLK 141
I + + + ++ V +I++ K
Sbjct: 124 IIDSLMQNPAISGVDTSIVMSTEK 147
>pir||B71206 probable leucine-responsive regulatory protein - Pyrococcus
horikoshii >gi|3258358|dbj|BAA31041.1| (AP000007) 150aa
long hypothetical leucine-responsive regulatory protein
[Pyrococcus horikoshii]
Length = 150
Score = 70.2 bits (169), Expect = 1e-11
Identities = 43/131 (32%), Positives = 73/131 (54%), Gaps = 3/131 (2%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
++D+ D+ +L+ L +AR ++K LGI T V R+K L E+GIIE +TIK N KKL
Sbjct: 4 ILDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFTIKPNYKKL 63
Query: 61 GYSLVTITGVDTRPEKLF---EVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADI 117
+ P+ EVAE++ V E++L +G+ ++ + A + E++ I
Sbjct: 64 NLGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEIGRI 123
Query: 118 ISNKIGKIDGV 128
+ +K+ +I GV
Sbjct: 124 VIDKLREIRGV 134
>pir||C83323 probable transcriptional regulator PA2577 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948639|gb|AAG05965.1|AE004686_3 (AE004686) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 145
Score = 70.2 bits (169), Expect = 1e-11
Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
M D+ D+ +++ L D+R +A++ G+S +V +R++ LEE+G+I GYT+ ++P+
Sbjct: 1 MTDDIDQRLINALMADSRLSLKALAQVSGLSAPSVAERLRKLEERGVIRGYTLDVDPRCF 60
Query: 61 GYSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISN 120
GY I + P +L EV ++++ E +GD +A + + E L ++
Sbjct: 61 GYQFQAIVRIRPLPGRLHEVERQIQDIAEFTECDKVTGDDCFIARLQVRSMEQLDTLLD- 119
Query: 121 KIGKIDGVTKVCPAII 136
+I+G + AI+
Sbjct: 120 ---RINGYAETNTAIV 132
>pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi (strain Orsay)
>gi|5459110|emb|CAB50596.1| (AJ248288) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 150
Score = 68.7 bits (165), Expect = 3e-11
Identities = 42/144 (29%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
++D+ D+ +L+ L +AR ++K LGI T V R+K L E+GIIE +TIK N KKL
Sbjct: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
Query: 61 GYSLVTITGVDTRPEKLF---EVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADI 117
+ P+ +VAE++ + V E+++ +G+ ++ + A + E++ I
Sbjct: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
Query: 118 ISNKIGKIDGVTKVCPAIILERLK 141
+ +K+ +I GV + + + +K
Sbjct: 124 VIDKLREIRGVGQTVTMVSFDTVK 147
>pir||D70981 hypothetical protein Rv3291c - Mycobacterium tuberculosis (strain
H37RV) >gi|1877346|emb|CAB07073.1| (Z92771) hypothetical
protein Rv3291c [Mycobacterium tuberculosis]
Length = 150
Score = 67.1 bits (161), Expect = 8e-11
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
+D+ D+I++ L+ D R +E+A G+S +AV+ RV+ LE +G+++GY+ +INP+ +G
Sbjct: 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVG 64
Query: 62 YSL---VTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADII 118
+ L V IT +D P + + +L+ E V Y +G+ + ++ L D++
Sbjct: 65 HLLSAFVAITPLD--PSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLL 122
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48306157
Number of Sequences: 2977
Number of extensions: 1808707
Number of successful extensions: 5624
Number of sequences better than 1.0e-10: 32
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5596
Number of HSP's gapped (non-prelim): 32
length of query: 141
length of database: 189,106,746
effective HSP length: 55
effective length of query: 86
effective length of database: 156,189,961
effective search space: 13432336646
effective search space used: 13432336646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)