BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0394 (Hypoth) DE:conserved hypothetical protein
(264 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75176 conserved hypothetical protein PAB0394 - Pyrococcus ... 537 e-152
sp|O59258|UPPS_PYRHO PROBABLE UNDECAPRENYL PYROPHOSPHATE SYNTHET... 511 e-144
sp|Q58767|UPPS_METJA PROBABLE UNDECAPRENYL PYROPHOSPHATE SYNTHET... 292 3e-78
emb|CAC11686.1| (AL445064) conserved hypothetical protein [Therm... 277 8e-74
gi|11498818 conserved hypothetical protein [Archaeoglobus fulgid... 269 2e-71
sp|O26334|UPPS_METTH PROBABLE UNDECAPRENYL PYROPHOSPHATE SYNTHET... 265 4e-70
pir||T51169 hypothetical protein [imported] - Thermus aquaticus ... 252 2e-66
dbj|BAB12723.1| (AB048249) cis-polyprenyl diphosphate synthase [... 234 1e-60
pir||G72259 probable di-trans,poly-cis-decaprenylcistransferase ... 230 2e-59
gb|AAK40508.1| Undecaprenyl diphosphate synthase [Sulfolobus sol... 229 2e-59
sp|O31751|UPPS_BACSU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 223 2e-57
pir||C75273 undecaprenyl diphosphate synthase - Deinococcus radi... 217 9e-56
dbj|BAA97345.1| (AB020755) contains similarity to unknown protei... 212 3e-54
sp|O67291|UPPS_AQUAE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 210 1e-53
dbj|BAB14439.1| (AK023164) unnamed protein product [Homo sapiens] 205 4e-52
sp|O84456|UPPS_CHLTR UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 203 1e-51
pir||G83188 undecaprenyl pyrophosphate synthetase PA3652 [import... 203 2e-51
pir||T01130 hypothetical protein F26B6.6 - Arabidopsis thaliana ... 202 3e-51
gb|AAF22257.1|AF162441_1 (AF162441) cis-prenyltransferase homolo... 202 3e-51
pir||H81999 probable di-trans,poly-cis-decaprenylcistransferase ... 201 7e-51
pir||C81229 undecaprenyl pyrophosphate synthetase NMB0186 [impor... 199 2e-50
sp|Q55482|UPPS_SYNY3 UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 199 3e-50
gb|AAG20002.1| (AE005081) Vng1779c [Halobacterium sp. NRC-1] 199 3e-50
pir||C81670 undecaprenyl pyrophosphate synthetase TC0735 [import... 197 1e-49
dbj|BAA97348.1| (AB020755) cis-prenyltransferase homolog-like; u... 195 4e-49
pir||B82729 undecaprenyl pyrophosphate synthetase XF1050 [import... 193 2e-48
sp|P44938|UPPS_HAEIN UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 191 6e-48
emb|CAB69730.1| (AL137166) undecaprenyl phosphate synthetase [St... 191 6e-48
pir||F82099 undecaprenyl diphosphate synthase VC2256 [imported] ... 190 1e-47
sp|P20182|YT14_STRFR HYPOTHETICAL 29.1 KD PROTEIN IN TRANSPOSON ... 189 3e-47
sp|O82827|UPPS_MICLU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 189 3e-47
dbj|BAB06142.1| (AP001515) undecaprenyl pyrophosphate synthetase... 187 9e-47
gb|AAB08603.1| (U70214) hypothetical protein [Escherichia coli] 187 1e-46
sp|Q47675|UPPS_ECOLI UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 187 1e-46
dbj|BAA77849.1| (D83536) Hypothetical protein HI0920. [Escherich... 187 1e-46
pir||G72062 yaes family hypothetical protein - Chlamydophila pne... 186 2e-46
pir||H81604 undecaprenyl pyrophosphate synthetase CP0183 [import... 186 2e-46
sp|O53434|YA86_MYCTU HYPOTHETICAL 29.4 KD PROTEIN RV1086 >gi|744... 183 1e-45
sp|Q9ZEJ7|UPPS_ANAVA UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 181 7e-45
dbj|BAA97346.1| (AB020755) undecaprenyl pyrophosphate synthetase... 176 2e-43
sp|P57330|UPPS_BUCAI UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 175 4e-43
dbj|BAA97347.1| (AB020755) undecaprenyl pyrophosphate synthetase... 173 3e-42
sp|O51146|UPPS_BORBU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 172 5e-42
sp|O05837|UPPS_MYCTU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 171 6e-42
sp|Q9ZDA7|UPPS_RICPR UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 171 8e-42
gb|AAF46296.1| (AE003442) CG10778 gene product [Drosophila melan... 170 2e-41
sp|Q9ZK05|UPPS_HELPJ UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 168 9e-41
sp|P38119|UPPS_MYCLE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 167 2e-40
sp|P55984|UPPS_HELPY UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 166 3e-40
dbj|BAA78751.1| (AB023482) ESTs C72761(E2193),AU056875(S20945), ... 165 4e-40
sp|O14171|YE54_SCHPO HYPOTHETICAL 30.5 KDA PROTEIN C4D7.04C IN C... 164 1e-39
pir||T22661 hypothetical protein T01G1.1 - Caenorhabditis elegan... 163 2e-39
gb|AAD32914.1|AC007584_12 (AC007584) hypothetical protein [Arabi... 156 2e-37
pir||T36727 hypothetical protein SCH69.28c - Streptomyces coelic... 155 7e-37
sp|O83612|UPPS_TREPA UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP ... 154 9e-37
pir||H81354 probable undecaprenyl diphosphate synthase Cj0824 [i... 154 9e-37
gi|6319474 cis-prenyltransferase; Rer2p [Saccharomyces cerevisia... 151 1e-35
gb|AAD29658.1|AF124757_18 (AF124757) unknown [Zymomonas mobilis] 148 8e-35
sp|P38118|YARF_CORGL HYPOTHETICAL 26.1 KD PROTEIN IN AROF 3'REGION 130 2e-29
gi|6323748 cis-prenyltransferase homologue; Srt1p [Saccharomyces... 129 3e-29
dbj|BAB08234.1| (AB011483) undecaprenyl pyrophosphate synthetase... 126 3e-28
dbj|BAB08233.1| (AB011483) undecaprenyl pyrophosphate synthetase... 122 6e-27
gb|AAA96784.1| (U51683) ORF1; open reading frame in cdsA 5' regi... 109 3e-23
gb|AAB61966.1| (U60831) ORF1 [Haemophilus influenzae] 99 5e-20
gb|AAG20003.1| (AE005081) Vng1781c [Halobacterium sp. NRC-1] 94 2e-18
gi|11498314 conserved hypothetical protein [Archaeoglobus fulgid... 91 1e-17
pir||JQ0426 hypothetical 14.2K protein - Streptomyces fradiae tr... 88 1e-16
pir||H72615 hypothetical protein APE1385 - Aeropyrum pernix (str... 81 1e-14
gb|AAD09946.1| (AF064963) unknown [Coxiella burnetii] 69 5e-11
>pir||G75176 conserved hypothetical protein PAB0394 - Pyrococcus abyssi (strain
Orsay) >gi|5458004|emb|CAB49494.1| (AJ248284) conserved
hypothetical protein [Pyrococcus abyssi]
Length = 264
Score = 537 bits (1369), Expect = e-152
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MIYGILSHVPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGH 60
MIYGILSHVPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGH
Sbjct: 1 MIYGILSHVPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGH 60
Query: 61 LFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVH 120
LFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVH
Sbjct: 61 LFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVH 120
Query: 121 EYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRD 180
EYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRD
Sbjct: 121 EYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRD 180
Query: 181 VMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYF 240
VMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYF
Sbjct: 181 VMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYF 240
Query: 241 PEFRKIDFLRIIREFQKRERRFGR 264
PEFRKIDFLRIIREFQKRERRFGR
Sbjct: 241 PEFRKIDFLRIIREFQKRERRFGR 264
>sp|O59258|UPPS_PYRHO PROBABLE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447504|pir||F71037 hypothetical protein PH1590 -
Pyrococcus horikoshii >gi|3258019|dbj|BAA30702.1|
(AP000006) 264aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 264
Score = 511 bits (1303), Expect = e-144
Identities = 244/264 (92%), Positives = 259/264 (97%)
Query: 1 MIYGILSHVPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGH 60
MIY I+SH+PKIFFKPAYDLYERYL+EKVK+GVLPKHVAIIMDGNRRWA+K EKPPWYGH
Sbjct: 1 MIYRIISHIPKIFFKPAYDLYERYLIEKVKSGVLPKHVAIIMDGNRRWARKHEKPPWYGH 60
Query: 61 LFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVH 120
LFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEV+RLM+LFE+KFRELVTDKRVH
Sbjct: 61 LFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVDRLMKLFEEKFRELVTDKRVH 120
Query: 121 EYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRD 180
EYGVRVNVIGRKELLPKSVRDA EEAERATRKYNNY+LNVA+AYGGRSEIVDAVKDI RD
Sbjct: 121 EYGVRVNVIGRKELLPKSVRDAVEEAERATRKYNNYILNVALAYGGRSEIVDAVKDIARD 180
Query: 181 VMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYF 240
V+ GKLR+E+IDEELL++YLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYF
Sbjct: 181 VISGKLRIEEIDEELLRRYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYF 240
Query: 241 PEFRKIDFLRIIREFQKRERRFGR 264
PEFRKIDFLRIIREFQKRERRFGR
Sbjct: 241 PEFRKIDFLRIIREFQKRERRFGR 264
>sp|Q58767|UPPS_METJA PROBABLE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|2127987|pir||C64471 hypothetical protein HI0920
homolog - Methanococcus jannaschii
>gi|1592017|gb|AAB99380.1| (U67577) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 280
Score = 292 bits (740), Expect = 3e-78
Identities = 135/247 (54%), Positives = 188/247 (75%), Gaps = 2/247 (0%)
Query: 20 LYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGI 79
+YE+ L E + LPKHVAIIMDGNRR A+ K +YGH G++K+ E+L W +LGI
Sbjct: 34 IYEKILEEAIDKDNLPKHVAIIMDGNRRAAEIYGKDRYYGHYLGAEKVREVLRWARDLGI 93
Query: 80 RILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSV 139
++T+YAFSTENF+R KEEV++LM+LFE+KF E+ D+ +H Y VRV IGR LLPK+V
Sbjct: 94 NVVTLYAFSTENFRRPKEEVDKLMELFEKKFYEIADDEEIHRYEVRVRAIGRINLLPKNV 153
Query: 140 RDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKY 199
+ A + AE T+ YN + +N+AIAYGG+ EI+DAVK I V G++ EDID+EL+ K+
Sbjct: 154 QKAIKYAEERTKNYNKFFVNIAIAYGGQQEIIDAVKKIAEKVKRGEIEPEDIDKELIDKH 213
Query: 200 LYVPNM--PDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQK 257
LY N+ P+PD++IRT GE RISNFL++Q +YSEL+F D+Y+P FR++DFLR +R++Q+
Sbjct: 214 LYTANLPFPNPDLIIRTSGEERISNFLIWQSSYSELYFCDIYWPLFRRVDFLRAVRDYQR 273
Query: 258 RERRFGR 264
R+RRFG+
Sbjct: 274 RQRRFGK 280
>emb|CAC11686.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 258
Score = 277 bits (702), Expect = 8e-74
Identities = 132/248 (53%), Positives = 177/248 (71%)
Query: 17 AYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHE 76
A +YE LLE+VK P+H+ II DGNRR+A+ GH+ G +K+EE+++WC E
Sbjct: 11 ASKVYENVLLEEVKKYPRPRHIGIITDGNRRYARNVGISENEGHVKGKEKVEEVVDWCME 70
Query: 77 LGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLP 136
L IRI+T YAFSTENF+RS EEV+ L L + F+ L+ D+RV++ + V VIG +LP
Sbjct: 71 LDIRIVTFYAFSTENFRRSPEEVDFLFHLIDNAFKSLLKDERVYKNRINVKVIGNLSILP 130
Query: 137 KSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELL 196
+R E T+ +NNY LN+AI YGGR EI+DA+K I RD MDGKL ++++DEE
Sbjct: 131 AYLRQTIHIVEETTKNFNNYQLNLAIGYGGREEILDAIKRITRDAMDGKLNIDELDEEKF 190
Query: 197 KKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQ 256
+ YLY +PDPD+++RT GE RISNFLL+Q AYSEL+F DVY+PEF K+DFLR I +Q
Sbjct: 191 RMYLYDGRIPDPDLILRTSGEERISNFLLWQSAYSELYFSDVYWPEFSKLDFLRAIYSYQ 250
Query: 257 KRERRFGR 264
+R+RRFGR
Sbjct: 251 RRQRRFGR 258
>gi|11498818 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136142|sp|O29049|UPPS_ARCFU PROBABLE UNDECAPRENYL
PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447511|pir||B69402 conserved hypothetical protein
AF1219 - Archaeoglobus fulgidus
>gi|2649365|gb|AAB90027.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 251
Score = 269 bits (681), Expect = 2e-71
Identities = 127/243 (52%), Positives = 182/243 (74%), Gaps = 1/243 (0%)
Query: 18 YDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHEL 77
+ +YE LL V+ G +P H+AIIMDGNRR+A+K+ P GH FGSKK EE+LEWC +L
Sbjct: 4 HKIYENKLLRSVRKGAIPHHIAIIMDGNRRFARKKGLEPHEGHFFGSKKAEEVLEWCWDL 63
Query: 78 GIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPK 137
G+++LT+YAFSTENF+RS++E + + QL E + R L+ D+R +E +RV V+G++ELLP+
Sbjct: 64 GVKMLTLYAFSTENFRRSEKEKKNIFQLLESELRRLLKDRRTYERELRVKVVGKRELLPE 123
Query: 138 SVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLK 197
++R+ +E E T+K+ + LNVA+AYGGR EI+DAV+ I+R V G++R E+IDE++L+
Sbjct: 124 NLRETIKEVEERTKKHRRHYLNVAVAYGGRQEIIDAVRAILRKVRKGEVRPEEIDEKMLE 183
Query: 198 KYLY-VPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQ 256
++LY D++IRTGGE R+SNFL +Q A S +F DVY+PEFRKID LR IR +Q
Sbjct: 184 EHLYGEGRYSKVDLIIRTGGEQRLSNFLPWQAANSVAYFCDVYWPEFRKIDLLRAIRAWQ 243
Query: 257 KRE 259
R+
Sbjct: 244 YRK 246
>sp|O26334|UPPS_METTH PROBABLE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447505|pir||H69128 conserved hypothetical protein
MTH232 - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621280|gb|AAB84738.1| (AE000810) conserved
protein [Methanobacterium thermoautotrophicum]
Length = 255
Score = 265 bits (670), Expect = 4e-70
Identities = 126/250 (50%), Positives = 180/250 (71%), Gaps = 1/250 (0%)
Query: 15 KPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKR-EKPPWYGHLFGSKKLEEILEW 73
KP Y LYE Y+ ++ +P+HVAIIMDGNRR++K + P GH G + LE++L+W
Sbjct: 5 KPLYKLYEWYISRNLRRDRMPRHVAIIMDGNRRYSKLQGSMNPIEGHKKGIETLEKVLDW 64
Query: 74 CHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKE 133
C +LGI I+T YAFSTENFKR ++EV+ LM+LF + F + +++++H+ VRV +G+ E
Sbjct: 65 CVDLGIEIVTAYAFSTENFKRPEKEVKGLMKLFRENFEAIASNEKIHKNRVRVRAVGKLE 124
Query: 134 LLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDE 193
LLP+ VR A E AE++T +Y++ ++N+AI Y GR EIVDA + I DV G + EDIDE
Sbjct: 125 LLPEDVRRAIEIAEKSTEQYSDRLVNIAIGYDGRQEIVDATRKIAEDVKAGLIDPEDIDE 184
Query: 194 ELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIR 253
+++ + LY + DP ++IRT GE R+S FLL+Q +YSEL+F D +PE RK+DFLR IR
Sbjct: 185 DMINRNLYTAGLEDPHLIIRTSGEERLSGFLLWQSSYSELYFCDSLWPELRKVDFLRAIR 244
Query: 254 EFQKRERRFG 263
+Q+RERRFG
Sbjct: 245 SYQQRERRFG 254
>pir||T51169 hypothetical protein [imported] - Thermus aquaticus
>gi|3724366|dbj|BAA33784.1| (AB018379) unknown ORF
[Thermus thermophilus]
Length = 263
Score = 252 bits (638), Expect = 2e-66
Identities = 126/254 (49%), Positives = 169/254 (65%), Gaps = 4/254 (1%)
Query: 15 KPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWC 74
+P Y LYE+ LL +VK G +P+H+ +I+DGNRR+A+ P GH FG +K E+LEWC
Sbjct: 10 RPLYWLYEQRLLREVKRGPMPRHLGLILDGNRRYARALGLSPTKGHEFGVQKAYEVLEWC 69
Query: 75 HELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKEL 134
E+GI+ +TV+ FST+NFKR EEVE LM LF ++ + D R+ E+ VRV IGR+E
Sbjct: 70 LEMGIKTVTVWVFSTDNFKRPPEEVETLMNLFLREAERMAEDHRILEHQVRVRFIGRREG 129
Query: 135 LPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDV----MDGKLRVED 190
V A E ER T + LN+A+ YGGR EIVDAVK ++ + + K E
Sbjct: 130 FSPEVVRAIERLERRTEGHRGMFLNIALGYGGREEIVDAVKRLLLEAEARGLSPKEVAEG 189
Query: 191 IDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLR 250
+ E + ++LY +PDPD +IRT GE+R+S FLL+Q AYSE +F DV +PEFRKIDFLR
Sbjct: 190 LTPEDIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEFRKIDFLR 249
Query: 251 IIREFQKRERRFGR 264
+R +Q RERRFGR
Sbjct: 250 ALRSYQARERRFGR 263
>dbj|BAB12723.1| (AB048249) cis-polyprenyl diphosphate synthase [Sulfolobus
acidocaldarius]
Length = 262
Score = 234 bits (590), Expect = 1e-60
Identities = 117/256 (45%), Positives = 163/256 (62%), Gaps = 1/256 (0%)
Query: 9 VPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLE 68
+ + +P Y +YE+ L ++K G P HV II DGNRRWA+ P G+ G KL
Sbjct: 6 ITRALLRPIYKIYEKILWSQIKDGPFPFHVGIIPDGNRRWARNNRLPLDQGYYTGYVKLR 65
Query: 69 EILEWCHELGIRILTVYAFSTENF-KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVN 127
++L W E+GI +TV+A S EN KR+++E+ + + + EL+T VH+Y VRV
Sbjct: 66 DVLTWILEIGISTVTVFALSAENCEKRTQQELSMIFKYLKIGLDELLTSDLVHKYQVRVK 125
Query: 128 VIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLR 187
IG + LP+ ++ + E T KYN L +AI YGGR EI+DA++ I+ D G +
Sbjct: 126 AIGMLDKLPEDLKKLVVDLESTTEKYNKKKLILAICYGGRQEILDAIRKIMNDYKLGIID 185
Query: 188 VEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKID 247
+ IDE +KYLY + D D++IR+ GE+RISNFLL+ +AYSELFFVDVY+P+FRKID
Sbjct: 186 SKSIDESTFRKYLYDQELSDIDLLIRSSGEIRISNFLLWHLAYSELFFVDVYWPDFRKID 245
Query: 248 FLRIIREFQKRERRFG 263
R IR FQKR+R FG
Sbjct: 246 LWRAIRSFQKRKRNFG 261
>pir||G72259 probable di-trans,poly-cis-decaprenylcistransferase (EC 2.5.1.31) -
Thermotoga maritima (strain MSB8)
>gi|4981961|gb|AAD36469.1|AE001792_9 (AE001792)
conserved hypothetical protein [Thermotoga maritima]
Length = 233
Score = 230 bits (580), Expect = 2e-59
Identities = 121/231 (52%), Positives = 163/231 (70%), Gaps = 6/231 (2%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+P+HVAIIMDGN RWAKKR P GH G++ L ++W ELGI+ LT ++FSTEN+K
Sbjct: 3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWK 62
Query: 94 RSKEEVERLMQLFEQKF-RELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
R KEEVE LM LF Q RE+ +R VRV ++GRKE LP+ V +E E T++
Sbjct: 63 RPKEEVEFLMDLFVQMIDREMELLRRER---VRVRILGRKEGLPEKVLKKWQEVEEKTKE 119
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVI 212
++ L +A YGGR EI+DAV+ I++DV GK ++E + EE ++YLY+P++PDPD++I
Sbjct: 120 FDRMTLIIAFNYGGRREILDAVEFILKDVSHGK-KIE-LTEETFRQYLYLPDVPDPDLII 177
Query: 213 RTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
RT GE+R+SNFLL+Q AYSEL+F +P+F K DFLR I + KRERRFG
Sbjct: 178 RTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFG 228
>gb|AAK40508.1| Undecaprenyl diphosphate synthase [Sulfolobus solfataricus]
Length = 262
Score = 229 bits (579), Expect = 2e-59
Identities = 118/253 (46%), Positives = 161/253 (62%), Gaps = 1/253 (0%)
Query: 12 IFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEIL 71
+ FKP Y LYE L +++ G LP HV II DGNRRWA+ + +G KKL+E+L
Sbjct: 9 LLFKPIYKLYELVLWNQIRNGPLPDHVGIIPDGNRRWARDNNLSLNDAYFYGYKKLKEVL 68
Query: 72 EWCHELGIRILTVYAFSTENF-KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIG 130
W ELGI+ +TV+ STEN KR + E+ + ++ ++L+ D V +Y V+V+ IG
Sbjct: 69 IWLLELGIKNITVFVLSTENCDKRKQNELSIITTYIKRGIQDLLEDPIVDKYEVKVSAIG 128
Query: 131 RKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVED 190
+ + LPK + D T Y+ L +AI YGGR EI+DAV ++ D +GK+ +
Sbjct: 129 KLDKLPKDLIDYLNRVVEKTSNYDKRKLTLAICYGGRQEILDAVVRLLDDYRNGKIVKSE 188
Query: 191 IDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLR 250
I+EE +KY Y + D D+VIRT GEVRISNFLL+ +AYSELFF + Y+PEFRKID R
Sbjct: 189 INEETFRKYFYDSELQDIDLVIRTSGEVRISNFLLWHVAYSELFFCEAYWPEFRKIDLWR 248
Query: 251 IIREFQKRERRFG 263
IR FQKR+R FG
Sbjct: 249 AIRSFQKRKRNFG 261
>sp|O31751|UPPS_BACSU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447510|pir||A69881 conserved hypothetical protein
yluA - Bacillus subtilis >gi|2634025|emb|CAB13526.1|
(Z99112) similar to hypothetical proteins [Bacillus
subtilis]
Length = 260
Score = 223 bits (563), Expect = 2e-57
Identities = 112/242 (46%), Positives = 161/242 (66%), Gaps = 2/242 (0%)
Query: 22 ERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRI 81
ERY E + G +P+H+AIIMDGN RWAKKR P GH G K ++ + +ELG+++
Sbjct: 19 ERYTKEDILKGEIPEHIAIIMDGNGRWAKKRSLPRIAGHHEGMKVVKRTTKLANELGVKV 78
Query: 82 LTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRD 141
LT+YAFSTEN+KR K EV+ LM+L E+ + + + E V+V +IG + LP
Sbjct: 79 LTLYAFSTENWKRPKMEVDFLMKLPEEFLNTYLPE--LVEENVQVRIIGDETALPAHTLR 136
Query: 142 AAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLY 201
A E+A + T + + +LN A+ YGGR+EIV A K + V +G L +EDIDE L YL
Sbjct: 137 AIEKAVQDTAQNDGMILNFALNYGGRTEIVSAAKSLAEKVKEGSLNIEDIDESLFSTYLM 196
Query: 202 VPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERR 261
++ DP+++IRT GE+R+SNF+L+Q+AYSE F DV +P+F++ FL+ + EFQ+R RR
Sbjct: 197 TESLQDPELLIRTSGEIRLSNFMLWQVAYSEFVFTDVLWPDFKEDHFLQALGEFQQRGRR 256
Query: 262 FG 263
FG
Sbjct: 257 FG 258
>pir||C75273 undecaprenyl diphosphate synthase - Deinococcus radiodurans
(strain R1) >gi|6460263|gb|AAF11988.1|AE002074_6
(AE002074) undecaprenyl diphosphate synthase
[Deinococcus radiodurans]
Length = 339
Score = 217 bits (548), Expect = 9e-56
Identities = 109/249 (43%), Positives = 154/249 (61%), Gaps = 5/249 (2%)
Query: 21 YERYLLEKVKA-GVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGI 79
YE+ L +VKA G LP+H+ +I+DGNRR+A+ GH FG+ K E+L+WC ELGI
Sbjct: 91 YEQKLAREVKANGKLPRHLGLILDGNRRFARAAGLQREMGHSFGADKAHEVLQWCLELGI 150
Query: 80 RILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSV 139
T++ ST+N R E+ ++ L E++ R+L D R+H VRV IG+ + P V
Sbjct: 151 PSATIWVLSTDNGSREPAELAHILSLLEREARQLAVDPRIHANRVRVRAIGQHDNFPPQV 210
Query: 140 RDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEEL---- 195
A E +T Y LN+A+ YGGR EIVDAV+ +R +E E L
Sbjct: 211 LAALNNLEESTAGYEGMRLNIAVGYGGREEIVDAVQSYLRTQAAQGATLEQAAENLTPDA 270
Query: 196 LKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREF 255
+ +LY + PDPD +IRT GE+R+S F+L+Q YSE +F DVY+P FR++DFLR +R+F
Sbjct: 271 IGAHLYAADQPDPDFIIRTSGEIRLSGFMLWQSVYSEYYFCDVYWPGFRRVDFLRALRDF 330
Query: 256 QKRERRFGR 264
Q R+RRFG+
Sbjct: 331 QGRDRRFGK 339
>dbj|BAA97345.1| (AB020755) contains similarity to unknown
protein~gb|AAF22257.1~gene_id:MZN1.21 [Arabidopsis
thaliana]
Length = 310
Score = 212 bits (535), Expect = 3e-54
Identities = 113/264 (42%), Positives = 168/264 (62%), Gaps = 8/264 (3%)
Query: 3 YGILSHVPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLF 62
+G+ S + F A + E L E++ A ++PKHVAIIMDGN RWAK R PW GH
Sbjct: 48 FGVKSSKSDVSFTAAEE--EETLPEELHAELMPKHVAIIMDGNGRWAKNRGLQPWDGHRA 105
Query: 63 GSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTD-KRVHE 121
G + L+EI+E C + GI++LTV+AFST+N+ R + E++ L LFE R L T+ + + +
Sbjct: 106 GVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFE---RSLKTEFQNLAK 162
Query: 122 YGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDV 181
VR+++IG LPKS+ E E T+ L VA+ Y G+ +++ A + I R V
Sbjct: 163 NNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRV 222
Query: 182 MDGKLRVEDIDEELLKKYLYV--PNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVY 239
DG++ VE+IDE L+++ L P PD++IRT GE+R+SNFLL+Q+AY+ELFF
Sbjct: 223 KDGEIEVEEIDERLIEEELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQEL 282
Query: 240 FPEFRKIDFLRIIREFQKRERRFG 263
+P+F + F+ + FQ+R+RRFG
Sbjct: 283 WPDFGRSGFIEALMSFQQRQRRFG 306
>sp|O67291|UPPS_AQUAE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447513|pir||H70407 probable
di-trans,poly-cis-decaprenylcistransferase (EC 2.5.1.31)
aq_1248 - Aquifex aeolicus >gi|2983689|gb|AAC07254.1|
(AE000730) hypothetical protein [Aquifex aeolicus]
Length = 231
Score = 210 bits (529), Expect = 1e-53
Identities = 107/231 (46%), Positives = 159/231 (68%), Gaps = 8/231 (3%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
LP+HVAIIMDGN RWA++R P GH G++ E+I+E+C ELGI+ LT++AFSTEN+
Sbjct: 5 LPEHVAIIMDGNGRWARQRGLPRVAGHYRGAEVAEDIIEYCIELGIKHLTLFAFSTENWN 64
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R KEEV+ L +L E R ++++ GVRV +IGR++ L + + + EE E ++ +
Sbjct: 65 RPKEEVKALFELMENYIRS--KREKLYSLGVRVRLIGRRDRLSRGLVNLMEELESDSKDF 122
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
N LNVAI YGGR +I+ AVK I+ +V KL DEE ++L + PDPD++IR
Sbjct: 123 KNLFLNVAIDYGGRDDILRAVKKIM-EVQPSKL-----DEETFSQFLDLSCSPDPDLLIR 176
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
T GE RISNFLL+ +AY+EL+F D +P+F + +F++ + ++ +R+R+FGR
Sbjct: 177 TAGEKRISNFLLWNLAYTELYFTDTLWPDFTREEFMKALEDYSRRKRKFGR 227
>dbj|BAB14439.1| (AK023164) unnamed protein product [Homo sapiens]
Length = 334
Score = 205 bits (517), Expect = 4e-52
Identities = 112/238 (47%), Positives = 149/238 (62%), Gaps = 1/238 (0%)
Query: 20 LYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGI 79
L+ER+ +KAG +PKH+A IMDGNRR+AKK + GH G KL E L WC LGI
Sbjct: 11 LWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAETLRWCLNLGI 70
Query: 80 RILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDK-RVHEYGVRVNVIGRKELLPKS 138
+TVYAFS ENFKRSK EV+ LM L QKF L+ +K ++ ++GV + V+G LLP
Sbjct: 71 LEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRVLGDLHLLPLD 130
Query: 139 VRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKK 198
+++ +A +AT+ YN L V AY R EI +AV+++ V G L DI E LL K
Sbjct: 131 LQELIAQAVQATKNYNKCFLYVCFAYTSRHEISNAVREMAWGVEQGLLDPSDISESLLDK 190
Query: 199 YLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQ 256
LY P PDI+IRT GEVR+S+FLL+Q ++S L F V +PE+ + I +FQ
Sbjct: 191 CLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLFEAILQFQ 248
>sp|O84456|UPPS_CHLTR UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447519|pir||E71512 hypothetical protein CT450 -
Chlamydia trachomatis (serotype D, strain UW3/Cx)
>gi|3328883|gb|AAC68050.1| (AE001319) YaeS family
[Chlamydia trachomatis]
Length = 253
Score = 203 bits (512), Expect = 1e-51
Identities = 104/235 (44%), Positives = 150/235 (63%), Gaps = 6/235 (2%)
Query: 34 LPKHVAIIMDGNRRWAKKRE----KPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFST 89
LP+H+AIIMDGNRRW +K E K GH G+ + +I++ LG+ LT++AFST
Sbjct: 21 LPRHIAIIMDGNRRWQRKHEQFCQKRAISGHRQGADSIPQIVDTALHLGVEALTLFAFST 80
Query: 90 ENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERA 149
ENF RSK EV L LF + R ++ +H+ +R+ IG LP+ +++ E+A A
Sbjct: 81 ENFSRSKSEVAELFSLFNSQLRSKLSF--LHDREIRLRCIGDLSKLPQELQNNIEQASSA 138
Query: 150 TRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPD 209
T Y+ L AI YG + E+V A K++ +D+ K+ V DI EEL+ YL +PDPD
Sbjct: 139 TAHYSRMELIFAINYGSKDELVRAFKELHQDLASKKISVNDISEELISSYLDTSGLPDPD 198
Query: 210 IVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
++IRTGGE+R+SNFLL+QIAY+EL+ DV +P+F D L I+ +Q+R RR G+
Sbjct: 199 LLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTANDLLEAIKTYQQRSRRGGK 253
>pir||G83188 undecaprenyl pyrophosphate synthetase PA3652 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9949813|gb|AAG07040.1|AE004785_4 (AE004785)
undecaprenyl pyrophosphate synthetase [Pseudomonas
aeruginosa]
Length = 251
Score = 203 bits (510), Expect = 2e-51
Identities = 105/240 (43%), Positives = 154/240 (63%), Gaps = 3/240 (1%)
Query: 26 LEKVKAGV-LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTV 84
+EK + V +P+HVAIIMDGN RWAKKR P GH G + ++E C E G+ +LT+
Sbjct: 1 MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTL 60
Query: 85 YAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAE 144
+AFS+EN++R +EV LM+LF R V +++ E G+R+ +IG + ++ A
Sbjct: 61 FAFSSENWQRPADEVSALMELFLVALRREV--RKLDENGIRLRIIGDRTRFHPELQAAMR 118
Query: 145 EAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPN 204
EAE AT ++L VA YGG+ +IV A + + R+V G L +DI ELL+ L +
Sbjct: 119 EAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGD 178
Query: 205 MPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
P PD+ IRTGGE RISNFLL+Q+AY+EL+F D+++P+F+ + +F KR+RRFG+
Sbjct: 179 QPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGK 238
>pir||T01130 hypothetical protein F26B6.6 - Arabidopsis thaliana
>gi|3242704|gb|AAC23756.1| (AC003040) hypothetical
protein [Arabidopsis thaliana]
Length = 290
Score = 202 bits (509), Expect = 3e-51
Identities = 105/233 (45%), Positives = 149/233 (63%), Gaps = 3/233 (1%)
Query: 33 VLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENF 92
++P+HVA I+DGNRRWAK+ GH G+K+L +I E C ELG+ ++ +AFSTEN+
Sbjct: 56 LMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFSTENW 115
Query: 93 KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
R K E++ LM L Q +R K H VRV+VIG K +P+S+ E E AT+
Sbjct: 116 GRDKIEIDNLMSLI-QHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEATKG 174
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYV--PNMPDPDI 210
Y N L +A+ Y G+ +I+ A K +V+ G +R ED+DE L+++ L + P PD+
Sbjct: 175 YKNKHLIMAVDYSGKFDIMHACKSLVKKSEKGLIREEDVDEALIERELLTNCSDFPSPDL 234
Query: 211 VIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
+IRT GE RISNF L+Q+AYSELFF V++P+F K L + +Q+RERRFG
Sbjct: 235 MIRTSGEQRISNFFLWQLAYSELFFSPVFWPDFDKDKLLEALASYQRRERRFG 287
>gb|AAF22257.1|AF162441_1 (AF162441) cis-prenyltransferase homolog [Arabidopsis thaliana]
>gi|7960765|emb|CAB91841.1| (AJ277136) dehydrodolichyl
diphosphate synthase [Arabidopsis thaliana]
Length = 303
Score = 202 bits (509), Expect = 3e-51
Identities = 105/233 (45%), Positives = 149/233 (63%), Gaps = 3/233 (1%)
Query: 33 VLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENF 92
++P+HVA I+DGNRRWAK+ GH G+K+L +I E C ELG+ ++ +AFSTEN+
Sbjct: 69 LMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFSTENW 128
Query: 93 KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
R K E++ LM L Q +R K H VRV+VIG K +P+S+ E E AT+
Sbjct: 129 GRDKIEIDNLMSLI-QHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEATKG 187
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYV--PNMPDPDI 210
Y N L +A+ Y G+ +I+ A K +V+ G +R ED+DE L+++ L + P PD+
Sbjct: 188 YKNKHLIMAVDYSGKFDIMHACKSLVKKSEKGLIREEDVDEALIERELLTNCSDFPSPDL 247
Query: 211 VIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
+IRT GE RISNF L+Q+AYSELFF V++P+F K L + +Q+RERRFG
Sbjct: 248 MIRTSGEQRISNFFLWQLAYSELFFSPVFWPDFDKDKLLEALASYQRRERRFG 300
>pir||H81999 probable di-trans,poly-cis-decaprenylcistransferase (EC 2.5.1.31)
NMA0081 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7378854|emb|CAB83397.1| (AL162752)
putative undecaprenyl diphosphate synthase [Neisseria
meningitidis Z2491]
Length = 248
Score = 201 bits (506), Expect = 7e-51
Identities = 103/231 (44%), Positives = 149/231 (63%), Gaps = 8/231 (3%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+PKH+A+IMDGN RWAKKR P GH G LE +++ C +LG++ LTV+AFSTEN++
Sbjct: 14 IPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWR 73
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R ++EV LM LF Q ++ V +R+HE +R+ ++G +E + + EEAE T
Sbjct: 74 RPEDEVSFLMGLFLQALQKQV--RRLHENNMRLKILGSRERFNRQILKGIEEAEALTANN 131
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
L++A YGGR +I+ A ++ + V +I E+ L KYL + + P+PD+ IR
Sbjct: 132 TGLTLSIAADYGGRWDILQAANKLIAE------GVSEITEDTLAKYLMLGDAPEPDLFIR 185
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
TGGE RISNFLL+Q+AY+EL+F D+ +P+F + FQKRERRFGR
Sbjct: 186 TGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGR 236
>pir||C81229 undecaprenyl pyrophosphate synthetase NMB0186 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7225405|gb|AAF40643.1| (AE002375) undecaprenyl
pyrophosphate synthetase [Neisseria meningitidis MC58]
Length = 248
Score = 199 bits (502), Expect = 2e-50
Identities = 102/231 (44%), Positives = 149/231 (64%), Gaps = 8/231 (3%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+PKH+A+IMDGN RWAKKR P GH G LE +++ C +LG++ LTV+AFSTEN++
Sbjct: 14 IPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWR 73
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R ++EV LM LF Q ++ V +R+HE +R+ ++G +E + + EEAE T
Sbjct: 74 RPEDEVSFLMGLFLQALQKQV--RRLHENNMRLKILGSRERFNRQILQGIEEAEALTANN 131
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
L++A YGGR +I+ A ++ + V +I E+ L K+L + + P+PD+ IR
Sbjct: 132 TGLTLSIAADYGGRWDILQAANKLIAE------GVSEITEDTLAKHLMLGDAPEPDLFIR 185
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
TGGE RISNFLL+Q+AY+EL+F D+ +P+F + FQKRERRFGR
Sbjct: 186 TGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGR 236
>sp|Q55482|UPPS_SYNY3 UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447507|pir||S75982 hypothetical protein sll0506 -
Synechocystis sp. (strain PCC 6803)
>gi|1001342|dbj|BAA10829.1| (D64006) hypothetical
protein [Synechocystis sp.]
Length = 249
Score = 199 bits (501), Expect = 3e-50
Identities = 104/231 (45%), Positives = 143/231 (61%), Gaps = 2/231 (0%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
LP+HVA+IMDGN RWAK+R P GH G L+ +L C + GI LT YAFSTEN+
Sbjct: 20 LPQHVAVIMDGNGRWAKQRGMPRIMGHQRGVDSLKNLLRCCDDWGIAALTAYAFSTENWG 79
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R EEVE LM LFE+ R + K + VR+ +G LP+S++D + T+
Sbjct: 80 RPLEEVEFLMTLFERVLRREL--KEMMAENVRIRFVGNLTSLPRSLQDEIARSMEDTKNN 137
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
VA YGGR EIV + I R+V GKL E IDE +++KYLY + PD++IR
Sbjct: 138 TGIRFTVATNYGGRQEIVHVCQAIAREVQSGKLDPETIDEGVVEKYLYTEGLSHPDLLIR 197
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
T GE+RISNFLL+Q+AY+E++ +P+F + F +R++Q+R RRFG+
Sbjct: 198 TSGELRISNFLLWQMAYAEIYVTSTLWPDFDRQAFHLALRDYQQRHRRFGK 248
>gb|AAG20002.1| (AE005081) Vng1779c [Halobacterium sp. NRC-1]
Length = 302
Score = 199 bits (501), Expect = 3e-50
Identities = 104/241 (43%), Positives = 145/241 (60%), Gaps = 4/241 (1%)
Query: 20 LYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGI 79
+YER L ++ P HVA+I DGNRR+A++ P G+ G++ E +LEWC +LG+
Sbjct: 12 VYERLLTREIDGA--PAHVAVIQDGNRRYAREHGDDPTDGYQSGARTTERVLEWCSDLGV 69
Query: 80 RILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSV 139
LT+YAFSTENF+R ++ + L L E K RE RVH VR+ IG LP+ V
Sbjct: 70 EELTLYAFSTENFERPPDQQQHLFDLLESKLREFADADRVHADRVRIRAIGDTGRLPQRV 129
Query: 140 RDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKY 199
RDA AE T Y+ + LNVA+AYGGR E++ A + + V G L DID + ++
Sbjct: 130 RDAITYAESRTAGYDGFTLNVALAYGGRDELLTAARGVADAVAAGDLDPADIDAQAIESR 189
Query: 200 LYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSE--LFFVDVYFPEFRKIDFLRIIREFQK 257
L+ + D D++IRTGG+ R SNFL + SE +FF Y+PEF K+D LR IR ++
Sbjct: 190 LHTSPVRDVDLIIRTGGDERTSNFLPWHANGSEAAVFFCTPYWPEFSKVDLLRAIRTYES 249
Query: 258 R 258
R
Sbjct: 250 R 250
>pir||C81670 undecaprenyl pyrophosphate synthetase TC0735 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190765|gb|AAF39545.1|
(AE002342) undecaprenyl pyrophosphate synthetase
[Chlamydia muridarum]
Length = 253
Score = 197 bits (495), Expect = 1e-49
Identities = 101/235 (42%), Positives = 151/235 (63%), Gaps = 6/235 (2%)
Query: 34 LPKHVAIIMDGNRRWAKKREK----PPWYGHLFGSKKLEEILEWCHELGIRILTVYAFST 89
LPKH+AIIMDGNRRW KK E+ GH G+ + +I++ LG+ LT++AFST
Sbjct: 21 LPKHIAIIMDGNRRWQKKHEQFCKSNAISGHRRGADSIPQIVDTAALLGVEALTLFAFST 80
Query: 90 ENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERA 149
ENF RSK EV L LF + ++ +H+ +R+ IG LP+ +++ +A A
Sbjct: 81 ENFSRSKTEVAELFSLFNSQLHSKLSF--LHDREIRLRCIGDLSKLPQELQNNIAKAVSA 138
Query: 150 TRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPD 209
T Y++ L AI YG ++E+V A K++ +D+ + K+ + +I EEL+ YL +PDPD
Sbjct: 139 TTHYSHMELIFAINYGSKNELVRAFKELHQDLTNKKISINEISEELISSYLDTSGLPDPD 198
Query: 210 IVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
++IRTGGE+R+SNFLL+QIAY+EL+ DV +P+F D L I+ +Q+R RR G+
Sbjct: 199 LLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTAHDLLEAIKTYQQRSRRGGK 253
>dbj|BAA97348.1| (AB020755) cis-prenyltransferase homolog-like; undecaprenyl
phosphate synthetase-like [Arabidopsis thaliana]
Length = 302
Score = 195 bits (491), Expect = 4e-49
Identities = 105/246 (42%), Positives = 159/246 (63%), Gaps = 14/246 (5%)
Query: 27 EKVKAG--VLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTV 84
EK K G ++PKHVA+I+DGNRRWA+KR GH G+++L E + C +G +++
Sbjct: 61 EKQKRGRNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISL 120
Query: 85 YAFSTENFKRSKEEVERLMQLFEQKFRE----LVTDKRVHEYGVRVNVIGRKELLPKSVR 140
+AFSTEN++R ++EV+ LM LFE+ L +DK ++++VIG + LP+S+
Sbjct: 121 FAFSTENWERPEDEVKCLMALFEKYLASDMPYLRSDK------IKISVIGNRTKLPESLL 174
Query: 141 DAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYL 200
EE E AT+ Y L +AI Y GR +I+ A K + V DG ++VEDI+E+ ++K L
Sbjct: 175 GLIEEVEEATKSYEGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQVEDINEKAMEKEL 234
Query: 201 YV--PNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKR 258
P+PD++IRT GE RISNF L+Q AY+EL+F V +P+F + ++L + +Q+R
Sbjct: 235 LTKCSEFPNPDLLIRTSGEQRISNFFLWQSAYTELYFPTVLWPDFGEAEYLEALTWYQQR 294
Query: 259 ERRFGR 264
+RRFGR
Sbjct: 295 QRRFGR 300
>pir||B82729 undecaprenyl pyrophosphate synthetase XF1050 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105994|gb|AAF83860.1|AE003942_4 (AE003942)
undecaprenyl pyrophosphate synthetase [Xylella
fastidiosa]
Length = 255
Score = 193 bits (486), Expect = 2e-48
Identities = 95/230 (41%), Positives = 151/230 (65%), Gaps = 2/230 (0%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
LP+H+AIIMDGN RWA++R +P GH G K +++C E GI++LT++AFS+EN+
Sbjct: 12 LPRHIAIIMDGNGRWAERRSRPRTTGHRAGVKAAMRTVDFCLEKGIKMLTLFAFSSENWN 71
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R +EV LM++ + F + + +H GV+V IG ++ ++ + +AE T
Sbjct: 72 RPADEVNFLMEMSIKLFGRGIEE--LHRRGVQVRFIGERKRFDIALVEHMTKAEHLTANN 129
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
+L++A++YGGR +I A + + +DV G+L+ E IDE+LL +++ + ++P PD+ IR
Sbjct: 130 QRLILSLAVSYGGRQDITMAARALAQDVAAGRLKPEQIDEDLLGQHMALADLPPPDMFIR 189
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
T G +RISNFLL+QIAY+EL+F DV +PEF + + ++ RERRFG
Sbjct: 190 TSGVIRISNFLLWQIAYTELWFTDVMWPEFNSTVLQQALDDYASRERRFG 239
>sp|P44938|UPPS_HAEIN UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
>gi|1074561|pir||E64161 conserved hypothetical protein
HI0920 - Haemophilus influenzae (strain Rd KW20)
>gi|1573941|gb|AAC22578.1| (U32773) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 239
Score = 191 bits (481), Expect = 6e-48
Identities = 94/230 (40%), Positives = 145/230 (62%), Gaps = 2/230 (0%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+PKHVAIIMDGN RWAK++ K +GH G + + + + ++G+ +LT+YAFS+EN+
Sbjct: 9 IPKHVAIIMDGNGRWAKQKNKMRIFGHTNGVTAVRKAVAYARQIGVEVLTLYAFSSENWS 68
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R ++E+ LM LF Q V K++H+ + + +IG +++++ ++AE T K
Sbjct: 69 RPEQEISALMSLFMQALDREV--KKLHKNNICLKIIGDVSRFSETLQEKIKKAENLTEKN 126
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
LN+A YGG +I+ A K I V ++ V DI+ + +L N P D++IR
Sbjct: 127 TALTLNIAANYGGCWDIIQAAKQIAEKVKKEEMSVSDINNSTFQHHLATQNAPPVDLLIR 186
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
T GE RISNFLL+QIAY+EL+F DV +P+F +++F R I +Q+R RRFG
Sbjct: 187 TSGEQRISNFLLWQIAYAELYFSDVLWPDFNQLEFNRAIASYQQRHRRFG 236
>emb|CAB69730.1| (AL137166) undecaprenyl phosphate synthetase [Streptomyces
coelicolor A3(2)]
Length = 277
Score = 191 bits (481), Expect = 6e-48
Identities = 103/231 (44%), Positives = 145/231 (62%), Gaps = 2/231 (0%)
Query: 33 VLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENF 92
++P+HVAI+MDGN RWAK+R P GH G++++ ++L+ E+G+ +++YAFSTEN+
Sbjct: 32 LVPEHVAIVMDGNGRWAKERGLPRTEGHKVGAEQVMDVLQGAIEMGVGNISLYAFSTENW 91
Query: 93 KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
KRS EEV LM F + F D + E GVRV GR L KSV + A+ T+
Sbjct: 92 KRSPEEVRFLMN-FNRDFIRKSRDT-LDELGVRVRWAGRMPRLWKSVAKELQVAQEQTKD 149
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVI 212
+ L + YGGR+EI DA + + DV GKL ++E+ L KYLY P+MPD D+ +
Sbjct: 150 NDRLTLYFCMNYGGRAEIADAAQALAEDVRAGKLDPAKVNEKTLAKYLYYPDMPDVDLFL 209
Query: 213 RTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
R GE R SN+LL+Q AY+E+ F DV +P+F + D R EF R+RRFG
Sbjct: 210 RPSGEQRTSNYLLWQSAYAEMVFQDVLWPDFDRRDLWRACLEFASRDRRFG 260
>pir||F82099 undecaprenyl diphosphate synthase VC2256 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656817|gb|AAF95400.1| (AE004297) undecaprenyl
diphosphate synthase [Vibrio cholerae]
Length = 256
Score = 190 bits (479), Expect = 1e-47
Identities = 94/231 (40%), Positives = 150/231 (64%), Gaps = 2/231 (0%)
Query: 33 VLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENF 92
VLPKH+A+IMDGN RWAK + KP +GH G + + + LGI+ +T++AFS+EN+
Sbjct: 16 VLPKHIAVIMDGNGRWAKAQGKPRVFGHKNGVAAVRKTISTSARLGIKAVTLFAFSSENW 75
Query: 93 KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
+R +EEV LM+LF + K++H+ +R+ VIG K + ++ +AE+ T
Sbjct: 76 RRPEEEVGVLMELFMTVLSTEI--KKLHKNNLRLRVIGDKSRFSERLQTKIAQAEQLTAS 133
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVI 212
V+N+A YGG+ +I+ A + + V G+L+ DIDE++ K++L + ++PD D++I
Sbjct: 134 NTGMVVNIAANYGGQWDILQATQALAEKVTQGELQPSDIDEDVFKQHLTMADLPDVDLLI 193
Query: 213 RTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
RT GE RISNF+L+Q+AY+E++F V++PEF + + + F RERRFG
Sbjct: 194 RTSGECRISNFMLWQLAYAEMYFTPVFWPEFDENCLIEAVTWFVNRERRFG 244
>sp|P20182|YT14_STRFR HYPOTHETICAL 29.1 KD PROTEIN IN TRANSPOSON TN4556
Length = 259
Score = 189 bits (475), Expect = 3e-47
Identities = 105/254 (41%), Positives = 153/254 (59%), Gaps = 11/254 (4%)
Query: 18 YDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKP-PWYGHLFGSKKLEEILEWCHE 76
Y LY R L + AG LPKH+ +IMDGNRRWA++ P GH +G++ +E +L WC
Sbjct: 8 YALYARRLRRQTAAGPLPKHIGLIMDGNRRWARQMGMANPSIGHRYGAEHVESVLSWCET 67
Query: 77 LGIRILTVYAFSTENFKRSKE-EVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKEL- 134
GI+ +TV+ STEN +R + EV LMQ+ EQ + + +V + G +
Sbjct: 68 AGIKHVTVFVCSTENLQRRGDTEVSFLMQVIEQV---VAVHLARPDARWQVRIAGTLDXP 124
Query: 135 LPKSVRDAAEEAERATRKYNN-YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDE 193
S A +EA ATR+ + +AI YGGR E++DAV++++ + +ED+
Sbjct: 125 CADSTAHALKEAVEATRRCTTGSQVTLAIGYGGRQEVIDAVRELLHEQAAAGTTLEDLAA 184
Query: 194 EL----LKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFL 249
L + ++LY PDPD+VIRT GE R+SNFLL+Q AYSEL+F + Y+P FR+IDFL
Sbjct: 185 SLTMDDITRHLYTAGQPDPDLVIRTSGEQRMSNFLLWQSAYSELYFCEAYWPAFREIDFL 244
Query: 250 RIIREFQKRERRFG 263
R +R + R+RR+G
Sbjct: 245 RALRSYAARQRRYG 258
>sp|O82827|UPPS_MICLU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|11279223|pir||T48857
di-trans,poly-cis-decaprenylcistransferase (EC 2.5.1.31)
[validated] - Micrococcus luteus
>gi|3358087|dbj|BAA31993.1| (AB004319) undecaprenyl
diphosphate synthase [Micrococcus luteus]
Length = 249
Score = 189 bits (475), Expect = 3e-47
Identities = 95/235 (40%), Positives = 145/235 (61%), Gaps = 2/235 (0%)
Query: 29 VKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFS 88
+ A +PKH+AIIMDGN RWAK+++ P GH G + +++I + +LG++ LT+YAFS
Sbjct: 15 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVKKITRYASDLGVKYLTLYAFS 74
Query: 89 TENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAER 148
TEN+ R K+EV LM+L + + + E V+V IG + LP + A EA+
Sbjct: 75 TENWSRPKDEVNYLMKLPGDFLNTFLPE--LIEKNVKVETIGFIDDLPDHTKKAVLEAKE 132
Query: 149 ATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDP 208
T+ L A+ YGGR EI+ AV+ I G++ +++I E +YL+ NMPDP
Sbjct: 133 KTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDP 192
Query: 209 DIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
+++IRT GE R+SNFL++Q +YSE F+D ++P+F + + I +Q R RRFG
Sbjct: 193 ELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFG 247
>dbj|BAB06142.1| (AP001515) undecaprenyl pyrophosphate synthetase [Bacillus
halodurans]
Length = 256
Score = 187 bits (471), Expect = 9e-47
Identities = 96/230 (41%), Positives = 149/230 (64%), Gaps = 2/230 (0%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+PKHVAIIMDGN RWAKK+ P GH G K + +I+ +L I +L++YAFSTEN+K
Sbjct: 27 IPKHVAIIMDGNGRWAKKKGLPRIAGHREGMKVINKIVRKAIDLKIEVLSLYAFSTENWK 86
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R + EV+ L++L E +F +L + E V+V ++G + LP+ A +A T+
Sbjct: 87 RPRTEVDYLLKLPE-RFLKLELPNLMEE-NVQVRIMGGLDTLPEHTAKAVTKAMEETKDN 144
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
+LN A+ YG R E+V+A+K + ++V G L + I E+++ ++L ++ DPD++IR
Sbjct: 145 TGLILNFALNYGSRYEMVEAMKQVAKEVETGTLSSDAITEDVISRHLMTADLRDPDLLIR 204
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
T GE+R+SNF+L+Q+AYSE +F DV +P+F + I +QKR RR+G
Sbjct: 205 TSGEIRLSNFMLWQLAYSEFWFTDVLWPDFTEHHLTEAIAVYQKRARRYG 254
>gb|AAB08603.1| (U70214) hypothetical protein [Escherichia coli]
Length = 252
Score = 187 bits (470), Expect = 1e-46
Identities = 98/228 (42%), Positives = 139/228 (59%), Gaps = 2/228 (0%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
+HVAIIMDGN RWAKK+ K +GH G+K + + + GI LT+YAFS+EN+ R
Sbjct: 18 RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 77
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
+EV LM+LF V K +H + VR+ +IG +++ ++E T
Sbjct: 78 AQEVSALMELFVWALDSEV--KSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 135
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
LN+A YGGR +IV V+ + V G L+ + IDEE+L +++ + + D+VIRTG
Sbjct: 136 LTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTG 195
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
GE RISNFLL+QIAY+EL+F DV +P+F + DF + F RERRFG
Sbjct: 196 GEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 243
>sp|Q47675|UPPS_ECOLI UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
>gi|7447503|pir||F64741 conserved hypothetical protein
b0174 - Escherichia coli >gi|1786371|gb|AAC73285.1|
(AE000127) orf, hypothetical protein [Escherichia coli
K12]
Length = 253
Score = 187 bits (470), Expect = 1e-46
Identities = 98/228 (42%), Positives = 139/228 (59%), Gaps = 2/228 (0%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
+HVAIIMDGN RWAKK+ K +GH G+K + + + GI LT+YAFS+EN+ R
Sbjct: 19 RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
+EV LM+LF V K +H + VR+ +IG +++ ++E T
Sbjct: 79 AQEVSALMELFVWALDSEV--KSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 136
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
LN+A YGGR +IV V+ + V G L+ + IDEE+L +++ + + D+VIRTG
Sbjct: 137 LTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTG 196
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
GE RISNFLL+QIAY+EL+F DV +P+F + DF + F RERRFG
Sbjct: 197 GEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 244
>dbj|BAA77849.1| (D83536) Hypothetical protein HI0920. [Escherichia coli]
Length = 241
Score = 187 bits (470), Expect = 1e-46
Identities = 98/228 (42%), Positives = 139/228 (59%), Gaps = 2/228 (0%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
+HVAIIMDGN RWAKK+ K +GH G+K + + + GI LT+YAFS+EN+ R
Sbjct: 7 RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 66
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
+EV LM+LF V K +H + VR+ +IG +++ ++E T
Sbjct: 67 AQEVSALMELFVWALDSEV--KSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 124
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
LN+A YGGR +IV V+ + V G L+ + IDEE+L +++ + + D+VIRTG
Sbjct: 125 LTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTG 184
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
GE RISNFLL+QIAY+EL+F DV +P+F + DF + F RERRFG
Sbjct: 185 GEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 232
>pir||G72062 yaes family hypothetical protein - Chlamydophila pneumoniae
(strain CWL029) >gi|4376859|gb|AAD18706.1| (AE001641)
YaeS family hypothetical protein [Chlamydophila
pneumoniae CWL029] >gi|8978937|dbj|BAA98772.1|
(AP002547) YaeS family hypothetical protein
[Chlamydophila pneumoniae J138]
Length = 250
Score = 186 bits (468), Expect = 2e-46
Identities = 96/235 (40%), Positives = 142/235 (59%), Gaps = 6/235 (2%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWY----GHLFGSKKLEEILEWCHELGIRILTVYAFST 89
LP HVAIIMDGNRRW KK + + GH +G+K L IL +LGI++LT+Y FST
Sbjct: 18 LPNHVAIIMDGNRRWYKKHREECGHTHTSGHYYGAKVLPNILNAVLDLGIKVLTLYTFST 77
Query: 90 ENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERA 149
ENF R KEE++ + +F + + + +E +R IG LPK ++ R
Sbjct: 78 ENFGRPKEEIQEIFNIFYTQLDKQLPYLMENEICLRC--IGDLSKLPKGIQTKINHVSRM 135
Query: 150 TRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPD 209
T ++ L +A+ YGG+ E+V A K + D+++ K+ +D+ E L+ YL + DPD
Sbjct: 136 TASFSRLELVLAVNYGGKDELVRAFKKLHVDILNKKISSDDLSESLISSYLDTSGLTDPD 195
Query: 210 IVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
++IRTGGE+R+SNFLL+QIAY+EL+ D +P+F D I +Q+R RR G+
Sbjct: 196 LLIRTGGEMRVSNFLLWQIAYTELYITDTLWPDFTPQDLFEAINVYQQRSRRGGK 250
>pir||H81604 undecaprenyl pyrophosphate synthetase CP0183 [imported] -
Chlamydophila pneumoniae (strain AR39)
>gi|7189113|gb|AAF38056.1| (AE002179) undecaprenyl
pyrophosphate synthetase [Chlamydophila pneumoniae AR39]
Length = 261
Score = 186 bits (468), Expect = 2e-46
Identities = 96/235 (40%), Positives = 142/235 (59%), Gaps = 6/235 (2%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWY----GHLFGSKKLEEILEWCHELGIRILTVYAFST 89
LP HVAIIMDGNRRW KK + + GH +G+K L IL +LGI++LT+Y FST
Sbjct: 29 LPNHVAIIMDGNRRWYKKHREECGHTHTSGHYYGAKVLPNILNAVLDLGIKVLTLYTFST 88
Query: 90 ENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERA 149
ENF R KEE++ + +F + + + +E +R IG LPK ++ R
Sbjct: 89 ENFGRPKEEIQEIFNIFYTQLDKQLPYLMENEICLRC--IGDLSKLPKGIQTKINHVSRM 146
Query: 150 TRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPD 209
T ++ L +A+ YGG+ E+V A K + D+++ K+ +D+ E L+ YL + DPD
Sbjct: 147 TASFSRLELVLAVNYGGKDELVRAFKKLHVDILNKKISSDDLSESLISSYLDTSGLTDPD 206
Query: 210 IVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
++IRTGGE+R+SNFLL+QIAY+EL+ D +P+F D I +Q+R RR G+
Sbjct: 207 LLIRTGGEMRVSNFLLWQIAYTELYITDTLWPDFTPQDLFEAINVYQQRSRRGGK 261
>sp|O53434|YA86_MYCTU HYPOTHETICAL 29.4 KD PROTEIN RV1086 >gi|7447520|pir||D70895
hypothetical protein Rv1086 - Mycobacterium tuberculosis
(strain H37RV) >gi|2896723|emb|CAA17202.1| (AL021897)
hypothetical protein Rv1086 [Mycobacterium tuberculosis]
Length = 262
Score = 183 bits (461), Expect = 1e-45
Identities = 100/263 (38%), Positives = 155/263 (58%), Gaps = 11/263 (4%)
Query: 9 VPKIFFKPAYDLYERYLLEKVKAGV--LPKHVAIIMDGNRRWAKKREKPPW-YGHLFGSK 65
+P +P Y LYE L + + A LP+H+A++ DGNRRWA+ YG+ G+
Sbjct: 4 IPPRLKEPLYRLYELRLRQGLAASKSDLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAA 63
Query: 66 KLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVR 125
K+ E+L WCHE GI + TVY STEN +R +E+ L+++ E+ + + VR
Sbjct: 64 KIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAP--ANHWSVR 121
Query: 126 VNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIV-RDVMDG 184
+G L+ + A +T + ++ +NVA+ YGGR EIVDAV+ ++ +++ +G
Sbjct: 122 T--VGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANG 179
Query: 185 KLRVEDIDE---ELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFP 241
E +D E + + LY PDPD+VIRT GE R+S FLL+Q AYSE++F + ++P
Sbjct: 180 ATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWP 239
Query: 242 EFRKIDFLRIIREFQKRERRFGR 264
FR +DFLR +R++ R R +GR
Sbjct: 240 AFRHVDFLRALRDYSARHRSYGR 262
>sp|Q9ZEJ7|UPPS_ANAVA UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|4218154|emb|CAA10743.1| (AJ132706) hypothetical
protein [Anabaena variabilis]
Length = 251
Score = 181 bits (455), Expect = 7e-45
Identities = 93/231 (40%), Positives = 145/231 (62%), Gaps = 3/231 (1%)
Query: 35 PKHVAIIMDGNRR-WAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
P + +IMDGN R + P GH G L+++L C + GI+ LT YAFSTEN+K
Sbjct: 22 PNTLTVIMDGNGRDGLNVQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFSTENWK 81
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKY 153
R +EEVE LM LF++ R+ + + + E V++ +G LP+S++ + AT+
Sbjct: 82 RPQEEVEFLMTLFQRVLRQEL--REMVEENVQIQFVGNLAALPRSLQAEISRSMEATKNN 139
Query: 154 NNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
+VA YGGR EI+ A + I + V G L+ ++IDEE+ +++LY + DPD++IR
Sbjct: 140 RGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEIDEEVFERHLYTAGIADPDLLIR 199
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
T GE+R+SNFLL+Q+AY E++ D +P+F + +F R + +Q+RERRFG+
Sbjct: 200 TSGEMRLSNFLLWQMAYGEIYITDTLWPDFDRTEFHRALCAYQQRERRFGK 250
>dbj|BAA97346.1| (AB020755) undecaprenyl pyrophosphate synthetase-like [Arabidopsis
thaliana]
Length = 225
Score = 176 bits (443), Expect = 2e-43
Identities = 99/224 (44%), Positives = 136/224 (60%), Gaps = 4/224 (1%)
Query: 42 MDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVER 101
MDGNRRWAK+ GH G+K+L E E C +LGI ++ +AFSTEN+ R K EV+
Sbjct: 1 MDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFSTENWGRHKIEVKC 60
Query: 102 LMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVA 161
LM L + + + + E RV+VIG +P+S+ +E E ATR Y L +A
Sbjct: 61 LMSLIQHYLKSKIQYFQREE--TRVSVIGNLTKIPESLLRTVQEIEEATRSYKKKHLILA 118
Query: 162 IAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYV--PNMPDPDIVIRTGGEVR 219
I Y GR +I+ A K IV+ G +R ED+DE L+++ L P PD++IRT GE R
Sbjct: 119 IDYSGRLDILRACKSIVKKSEKGLIREEDVDEALIERELLTNCTEFPSPDLLIRTSGEQR 178
Query: 220 ISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
ISNF L+Q+AY+ELFF V +P+F K L + +Q+RERRFG
Sbjct: 179 ISNFFLWQLAYTELFFSPVLWPDFDKDKLLEALVSYQRRERRFG 222
>sp|P57330|UPPS_BUCAI UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|10038916|dbj|BAB12951.1| (AP001118) undecaprenyl
pyrophosphate synthetase [Buchnera sp. APS]
Length = 251
Score = 175 bits (440), Expect = 4e-43
Identities = 103/243 (42%), Positives = 144/243 (58%), Gaps = 4/243 (1%)
Query: 23 RYLLEKVKAG--VLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIR 80
+YLLE K P HVAIIMDGN RWA ++ K GH G + ++E +++ ++
Sbjct: 4 KYLLEYNKKNHECNPCHVAIIMDGNGRWATRQGKIRIMGHKEGFRAVKEAIKFSIANNLK 63
Query: 81 ILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVR 140
ILT+YAFS+EN+ R E++ LM+LF F K + ++ +R VIG K ++
Sbjct: 64 ILTLYAFSSENWNRPLFEIKALMELF--LFALDTEIKNLKKHNIRFKVIGDITCFDKKLQ 121
Query: 141 DAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYL 200
++ AE+ T +LN+A YGGR +I+++VK I+ V G L V I E + +YL
Sbjct: 122 NSIHYAEQITFDNTGLILNIAANYGGRWDIIESVKKIINRVQRGILDVNKIHENTISQYL 181
Query: 201 YVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRER 260
+ D+VIRTGGE RISNFLL+QIAYSEL+F DV +P+F F I F RER
Sbjct: 182 STSELLPVDLVIRTGGEKRISNFLLWQIAYSELYFTDVLWPDFNCHIFQHAIDSFVSRER 241
Query: 261 RFG 263
RFG
Sbjct: 242 RFG 244
>dbj|BAA97347.1| (AB020755) undecaprenyl pyrophosphate synthetase-like [Arabidopsis
thaliana]
Length = 226
Score = 173 bits (433), Expect = 3e-42
Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 13/233 (5%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+P+HVA+IMDGNRRWAK+ G+ G+K+L E + C +LGI ++ +AFSTEN+
Sbjct: 1 MPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFAFSTENWG 60
Query: 94 RSKEEVERLMQLFEQKFRELVTDKRV-HEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
R K + VT+ V +RV+VIG +P+S+ E E AT+
Sbjct: 61 RHKSF----------SIAQFVTNNLVCFSKEIRVSVIGNLAKIPESLLRTVHELEEATKS 110
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYV--PNMPDPDI 210
Y L +AI Y GR +I+ A K+IV+ G +R ED+DE L ++ L P PD+
Sbjct: 111 YKKKHLILAIDYSGRFDILGACKNIVKKSEQGLIREEDVDETLFERELQTRCTEFPSPDL 170
Query: 211 VIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
+IRT GE RISNF L+Q+AY+E FF V +P+F K F+ + +Q+R+RRFG
Sbjct: 171 LIRTSGEQRISNFFLWQLAYTEFFFSPVLWPDFDKQKFIEALVSYQRRDRRFG 223
>sp|O51146|UPPS_BORBU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447512|pir||H70114 conserved hypothetical protein
BB0120 - Lyme disease spirochete
>gi|2688015|gb|AAC66517.1| (AE001124) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 230
Score = 172 bits (431), Expect = 5e-42
Identities = 94/233 (40%), Positives = 140/233 (59%), Gaps = 6/233 (2%)
Query: 32 GVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTEN 91
G LP HV IIMDGNRRWA + G+ G K+ +EI+++ +GI+ L+ Y FSTEN
Sbjct: 4 GSLPSHVGIIMDGNRRWALGKRLSSLEGYKEGLKRAKEIVKYSLRVGIKCLSFYVFSTEN 63
Query: 92 FKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATR 151
++R E+E LM L R + G+++ V G E L V+ + +++ ++
Sbjct: 64 WRRDDCEIENLMFLIANYLR--AEFDFYEKNGIKIIVSGDVESLSGEVKSSIKDSISFSK 121
Query: 152 KYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIV 211
+NN +LN+AI YGGR+EI+ AVK V D +E ++E + +L P +PD D++
Sbjct: 122 NFNNLILNLAINYGGRNEILRAVKKFVSSDFD----LESLNENIFSSFLDNPELPDLDLL 177
Query: 212 IRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
IRTGG +RISNF L++IAYSEL F +V +PE+ + + + FQ R R FGR
Sbjct: 178 IRTGGNIRISNFFLWRIAYSELIFSNVLWPEYYDTRYSKDLECFQFRRRNFGR 230
>sp|O05837|UPPS_MYCTU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447506|pir||H70585 hypothetical protein Rv2361c -
Mycobacterium tuberculosis (strain H37RV)
>gi|2078038|emb|CAB08462.1| (Z95208) hypothetical
protein Rv2361c [Mycobacterium tuberculosis]
Length = 296
Score = 171 bits (430), Expect = 6e-42
Identities = 96/238 (40%), Positives = 141/238 (58%), Gaps = 6/238 (2%)
Query: 28 KVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAF 87
++ A LP HVAI+MDGN RWA +R GH G + +I ELGI+ L++YAF
Sbjct: 61 RIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAF 120
Query: 88 STENFKRSKEEVERLMQLFEQKFRELVTDKR--VHEYGVRVNVIGRKELLPKSVRDAAEE 145
STEN+KRS EEV LM R++V +R + + GVR+ +G + L +SV +
Sbjct: 121 STENWKRSPEEVRFLMGFN----RDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAV 176
Query: 146 AERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNM 205
AE T+ + +N + YGGR+EI +A ++I R+V G+L E I E + ++L P++
Sbjct: 177 AEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDI 236
Query: 206 PDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
PD D+ +RT GE R SNF+L+Q AY+E F D +P++ + D E+ R RRFG
Sbjct: 237 PDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFG 294
>sp|Q9ZDA7|UPPS_RICPR UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447517|pir||H71700 hypothetical protein RP425 -
Rickettsia prowazekii >gi|3860982|emb|CAA14882.1|
(AJ235271) unknown [Rickettsia prowazekii]
Length = 226
Score = 171 bits (429), Expect = 8e-42
Identities = 96/229 (41%), Positives = 135/229 (58%), Gaps = 8/229 (3%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
KH+AIIMDGN RWA + GH G+ K+ E+L L I +T+Y FS EN++RS
Sbjct: 5 KHLAIIMDGNARWADRHNLTKSEGHKAGADKIRELLPEFINLNIPYITLYTFSFENWQRS 64
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
EV+ L++L + + +HE GV++ VIGR LL S++ A T+ N
Sbjct: 65 SSEVDFLIKLLSIYLKNELDS--LHENGVKIKVIGRLNLLRSSLQKQINNAIELTKNNNK 122
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
L +A +YG R EIVDA I+ GK +V + D ++ LY P MPD D++IR+G
Sbjct: 123 IKLCIAFSYGSRQEIVDACTKIIAH---GKKQVSEYD---IQHALYDPEMPDVDLLIRSG 176
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
G RISNFLL+Q AY+EL+F Y+P+F K D I ++ KR+R FG+
Sbjct: 177 GVYRISNFLLWQAAYAELYFSQKYWPDFNKDDIHEAINDYSKRKRTFGK 225
>gb|AAF46296.1| (AE003442) CG10778 gene product [Drosophila melanogaster]
Length = 240
Score = 170 bits (426), Expect = 2e-41
Identities = 92/212 (43%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
Query: 18 YDLYERYLLEKVKA-GVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHE 76
Y ER + ++A G +P HVA +MDGNRR+A+ ++ GH G +KL + L WC +
Sbjct: 9 YTWTERIAMRTLRACGYIPHHVAFVMDGNRRFARSQQIDKIEGHSRGFEKLADCLRWCLD 68
Query: 77 LGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTD-KRVHEYGVRVNVIGRKELL 135
+G+R +T +AFS ENFKRS EEVE L L +KF L+ + R+ E+G+R+ VIG ELL
Sbjct: 69 VGVREVTTFAFSIENFKRSNEEVEGLFNLAREKFARLLEETARLDEHGIRIRVIGNIELL 128
Query: 136 PKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEEL 195
P ++ A +T + + LNVA AY R EI AV+ I+R L EDI E L
Sbjct: 129 PHDLQKLVASAMLSTERNDKLFLNVAFAYTSRDEITQAVETILRHGSQ-DLAGEDISERL 187
Query: 196 LKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQ 227
L++ LY + P PD+V RT GE R+S+F+++Q
Sbjct: 188 LEECLYTRHSPPPDLVFRTSGETRLSDFMMWQ 219
>sp|Q9ZK05|UPPS_HELPJ UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447508|pir||H71842 hypothetical protein jhp1142 -
Helicobacter pylori (strain J99)
>gi|4155749|gb|AAD06728.1| (AE001542) putative
[Helicobacter pylori J99]
Length = 234
Score = 168 bits (420), Expect = 9e-41
Identities = 88/228 (38%), Positives = 138/228 (59%), Gaps = 3/228 (1%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
KH+AIIMDGN RWAK + K YGH G K L++I WC + LT+YAFSTEN+KR
Sbjct: 6 KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRP 65
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
K EV+ LM++ ++ ++ + +R IG E K +RD E TR + +
Sbjct: 66 KSEVDFLMKMLKKYLKD--ERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKD 123
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
+ +A+ YG ++E+ A K ++ + + +E ++ E+ + L ++P+ D+++RTG
Sbjct: 124 FTQVLALNYGSKNELSRAFKSLLENPPNHINNIESLENEISHR-LDTHDLPEVDLLLRTG 182
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
GE+R+SNFLL+Q +Y+ELFF + +P+F D II +F KR R+FG
Sbjct: 183 GEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG 230
>sp|P38119|UPPS_MYCLE UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|2145717|pir||S72601 hypothetical protein B1937_F2_65
- Mycobacterium leprae >gi|466983|gb|AAA17169.1|
(U00016) B1937_F2_65 [Mycobacterium leprae]
Length = 296
Score = 167 bits (418), Expect = 2e-40
Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 6/238 (2%)
Query: 28 KVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAF 87
++ A LP HVAI+MDGN RWA +R GH G + ++ ELGI+ L++YAF
Sbjct: 61 RLSAAQLPTHVAIVMDGNGRWANQRGLHRTEGHKMGEAVVIDVACGAIELGIKWLSLYAF 120
Query: 88 STENFKRSKEEVERLMQLFEQKFRELVTDKR--VHEYGVRVNVIGRKELLPKSVRDAAEE 145
STEN+KRS EEV LM R++V +R + E GVR+ +G + L +SV +
Sbjct: 121 STENWKRSVEEVRFLMGFN----RDVVRRRRENLKEMGVRIRWVGSRPRLWRSVINELAI 176
Query: 146 AERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNM 205
AE T + +N + YGGR+EI +A ++I R G+L E I E + ++L P++
Sbjct: 177 AEHMTAGNDVITINYCVNYGGRTEIAEATREIARLAAAGRLNPERITESTITRHLQRPDI 236
Query: 206 PDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
PD D+ +RT GE R SNF+L+Q AY+E F D +P++ + D E+ R RRFG
Sbjct: 237 PDVDLFVRTSGEQRSSNFMLWQAAYTEYIFQDKLWPDYDRRDLWAACEEYASRNRRFG 294
>sp|P55984|UPPS_HELPY UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
>gi|7447509|pir||E64672 conserved hypothetical protein
HP1221 - Helicobacter pylori (strain 26695)
>gi|2314380|gb|AAD08263.1| (AE000627) conserved
hypothetical protein [Helicobacter pylori 26695]
Length = 234
Score = 166 bits (416), Expect = 3e-40
Identities = 88/228 (38%), Positives = 136/228 (59%), Gaps = 3/228 (1%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
KH+AIIMDGN RWAK + K YGH G K L++I WC + LT+YAFSTEN+KR
Sbjct: 6 KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRP 65
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
K EV+ LM++ ++ ++ +R IG E K +RD + E TR + +
Sbjct: 66 KSEVDFLMKMLKKYLKD--ERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKD 123
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
+ +A+ YG ++E+ A K ++ +E ++ E+ + L ++P+ D+++RTG
Sbjct: 124 FTQVLALNYGSKNELSRAFKSLLESPPSHINLLESLENEISNR-LDTHDLPEVDLLLRTG 182
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
GE+R+SNFLL+Q +Y+ELFF + +P+F D II +F KR R+FG
Sbjct: 183 GEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG 230
>dbj|BAA78751.1| (AB023482) ESTs C72761(E2193),AU056875(S20945), AU056876(S20945)
correspond to a region of the predicted gene.; Similar
to Thermus thermophilus gene for homocitrate synthase,
homoaconitate hydratase, and ORF,complete and partial
cds.(AB018379) [Oryza s>
Length = 299
Score = 165 bits (414), Expect = 4e-40
Identities = 95/238 (39%), Positives = 136/238 (56%), Gaps = 12/238 (5%)
Query: 32 GVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTEN 91
G +PKH+A IMDGNRR+AK R GH G L L +C+E+G++ +TVYAFS +N
Sbjct: 46 GPMPKHIAFIMDGNRRYAKFRSIQEGSGHRVGFSALIASLLYCYEMGVKYITVYAFSIDN 105
Query: 92 FKRSKEEVERLMQLFEQKFRELVTDKRV-HEYGVRVNVIGRKELLPKSVRDAAEEAERAT 150
FKR EV+ LM+L E+K EL+ ++ V ++ ++N G ++L KSVR AAE+ T
Sbjct: 106 FKRDPTEVKSLMELMEEKINELLENRNVINKVNCKINFWGNLDMLSKSVRVAAEKLMATT 165
Query: 151 RKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVE-----------DIDEELLKKY 199
+ V +V + Y SEIV+AV + + D R + DI L ++
Sbjct: 166 AENTGLVFSVCMPYNSTSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVADLDRH 225
Query: 200 LYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQK 257
+Y PDPDIVIRT GE R+SNFLL+Q +S L D +PEF + I ++Q+
Sbjct: 226 MYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
>sp|O14171|YE54_SCHPO HYPOTHETICAL 30.5 KDA PROTEIN C4D7.04C IN CHROMOSOME I
>gi|7490392|pir||T38795 conserved uncharacterized
protein domain-containing protein - fission yeast
(Schizosaccharomyces pombe) >gi|4038613|emb|CAB11276.1|
(Z98602) putative cis-prenyltransferase; possible
secretory pathway [Schizosaccharomyces pombe]
Length = 264
Score = 164 bits (411), Expect = 1e-39
Identities = 84/240 (35%), Positives = 141/240 (58%), Gaps = 2/240 (0%)
Query: 19 DLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELG 78
D E ++ +K G +P+H+A +MDGNRRWA++R GH G + L+ +L+ C +LG
Sbjct: 19 DQLETMMINTIKRGKVPQHIAFVMDGNRRWARQRRMETIEGHSSGFEALKSLLKVCLKLG 78
Query: 79 IRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVT-DKRVHEYGVRVNVIGRKELLPK 137
++ ++ + FS ENFKRSK EV+ LM++ + ++ V +YG+R+ ++G L
Sbjct: 79 VKEVSAFTFSIENFKRSKYEVDMLMEIAKNSLTQITAHGDLVDQYGIRIRIVGDLSRLQP 138
Query: 138 SVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLK 197
V + A +A T+ LNV Y R EI +V+ IV+ DG + EDIDE++ +
Sbjct: 139 DVLETALKAVEITKHNTKATLNVCFPYTSRHEIATSVQSIVKMAEDGTITPEDIDEDIFE 198
Query: 198 KYLYVPNMPDPDIVIRTGGEVRISNFLLYQI-AYSELFFVDVYFPEFRKIDFLRIIREFQ 256
K L + + D++IRT G R+S+F+L+Q +E+ F+D Y+P+F F ++ ++Q
Sbjct: 199 KNLLIKDSLPLDLLIRTSGVERLSDFMLWQCHKNTEIKFIDFYWPDFSIWKFFPMLIQYQ 258
>pir||T22661 hypothetical protein T01G1.1 - Caenorhabditis elegans
>gi|3877579|emb|CAB05214.1| (Z82271) Similarity to Mouse
kinensin-like protein KIF4 (SW:P33174), contains
similarity to Pfam domain: PF00225 (Kinesin motor
domain), Score=416.4, E-value=8.6e-122, N=2; PF00400 (WD
domain, G-beta repeat), Score=74.5, E-value=7.2e-19,
N=4; PF01255 (> >gi|3879321|emb|CAB07273.1| (Z92811)
Similarity to Mouse kinensin-like protein KIF4
(SW:P33174), contains similarity to Pfam domain: PF00225
(Kinesin motor domain), Score=416.4, E-value=8.6e-122,
N=2; PF00400 (WD domain, G-beta repeat), Score=74.5,
E-value=7.2e-19, N=4; PF01255 (>
Length = 1893
Score = 163 bits (408), Expect = 2e-39
Identities = 91/238 (38%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 23 RYLLEK-VKAGVLPKHVAIIMDGNRRWAKKREKPPWY-GHLFGSKKLEEILEWCHELGIR 80
++LL + + +G +P+HVA +MDGNRR+AK + GH G +L +IL+WC+ GIR
Sbjct: 24 QWLLRRFIASGPIPRHVAFVMDGNRRFAKTKHLGNVIKGHEKGFTQLAKILDWCNRFGIR 83
Query: 81 ILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTD-KRVHEYGVRVNVIGRKELLPKSV 139
+TVYAFS ENFKRS+EEV LM+L E+KF++L+ D +++ E + G + LL +
Sbjct: 84 EITVYAFSIENFKRSEEEVSGLMRLAEEKFQKLLNDSEKLDEKRICFRFYGNRSLLSSRL 143
Query: 140 RDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKY 199
+ + E T ++ LNV + Y R EI + + I + V DGK+ V++I+E ++
Sbjct: 144 QKLMSDIEHRTENFDGGRLNVCMPYTSRDEIARSFETIRKHVKDGKVNVDEINESMIDAC 203
Query: 200 LYVP-NMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQ 256
L PD+ IRT GE R+S+FL++Q + + ++F DV +PEF + + I +Q
Sbjct: 204 LDSGCGGTSPDLFIRTSGEHRLSDFLMWQASETHVYFDDVLWPEFGYFNLCKAILNYQ 261
>gb|AAD32914.1|AC007584_12 (AC007584) hypothetical protein [Arabidopsis thaliana]
Length = 260
Score = 156 bits (391), Expect = 2e-37
Identities = 95/247 (38%), Positives = 136/247 (54%), Gaps = 21/247 (8%)
Query: 32 GVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTEN 91
G +P H+A IMDGNRR+AKK GH G L +L++C+ELGI+ +T+YAFS +N
Sbjct: 2 GPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSALMSMLQYCYELGIKYVTIYAFSIDN 61
Query: 92 FKRSKEEVERLMQLFEQKFRELV-TDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERAT 150
F+R EEVE +M L +K + L+ + VH+YG+RV IG LL VR AAE+ +AT
Sbjct: 62 FRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIRVYFIGNLALLNDQVRAAAEKVMKAT 121
Query: 151 RKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMD----GKLRVEDIDEEL----------- 195
K + VL + IAY EIV AVK + D + ED D ++
Sbjct: 122 AKNSRVVLLICIAYNSTDEIVQAVKKSCINKSDNIEASNYKHEDSDSDIEGTDMENQEKK 181
Query: 196 -----LKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLR 250
+++ + + P+PDI+IR+ GE R+SNFLL+Q ++L +PE L
Sbjct: 182 IQLVDIEENMQMSVAPNPDILIRSSGETRLSNFLLWQTGNTQLCSPAALWPEIGLRHLLW 241
Query: 251 IIREFQK 257
I FQ+
Sbjct: 242 AILNFQR 248
>pir||T36727 hypothetical protein SCH69.28c - Streptomyces coelicolor
>gi|5102810|emb|CAB45225.1| (AL079308) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 258
Score = 155 bits (387), Expect = 7e-37
Identities = 89/254 (35%), Positives = 140/254 (55%), Gaps = 16/254 (6%)
Query: 20 LYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKRE-KPPWYGHLFGSKKLEEILEWCHELG 78
LY + L+ +++ P+H+ I++DGNRRWAK P G+ G K+ + L WC
Sbjct: 12 LYMKRLVRELEGRPRPQHIGIMLDGNRRWAKMSGIDDPREGYRAGGAKVLDFLRWCDSAQ 71
Query: 79 IRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKS 138
I +T++ S +N R +E++ L+ + + +L V +G +LLP
Sbjct: 72 IEHVTLFMLSDDNLARPEEQLNPLIDIIAEVVEQLAAPGNPWP----VEAVGALDLLPAE 127
Query: 139 VRDAAEEAERATR-KYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDE---- 193
+ A AT+ + ++VA+ YGGR EIVDAV+ + + + DIDE
Sbjct: 128 SASRLKTATAATQGRKGGTKVDVAVGYGGRREIVDAVRSALTEHSS---QGGDIDEFIET 184
Query: 194 ---ELLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLR 250
E + K+LY + D++IRT GE R+S FLL+Q AY+E+ F + Y+P+FR+IDFLR
Sbjct: 185 FTMEHISKHLYSKTRSESDLIIRTSGEQRLSGFLLWQSAYAEVHFCETYWPDFREIDFLR 244
Query: 251 IIREFQKRERRFGR 264
+R + RERR+GR
Sbjct: 245 ALRSYSLRERRYGR 258
>sp|O83612|UPPS_TREPA UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (UPP SYNTHETASE)
(DI-TRANS-POLY-CIS-DECAPRENYLCISTRANSFERASE)
(UNDECAPRENYL DIPHOSPHATE SYNTHASE) (UDS)
>gi|7447515|pir||E71304 conserved hypothetical protein
TP0603 - syphilis spirochete >gi|3322897|gb|AAC65576.1|
(AE001235) conserved hypothetical protein [Treponema
pallidum]
Length = 228
Score = 154 bits (386), Expect = 9e-37
Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 8/230 (3%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
+HVAIIMDGN RWA++R GH G + EI+ + + +T+Y FSTEN+KRS
Sbjct: 2 QHVAIIMDGNGRWAERRGLRRSAGHRRGLQTAREIVAALCAIRVPFVTLYVFSTENWKRS 61
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
EV LM L ++ ++ E+ +RV +G + LP VR E TR +
Sbjct: 62 AHEVHFLMNLIRWYLKKEMSF--YVEHAIRVVHLGCAQTLPPDVRSQIEYVVERTRSHRG 119
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVM--DGKLRVEDIDEELLKKYLYVPNMPDPDIVIR 213
+ +AI YGG+ EI+ AVK ++ DG+L + EE L P +P D +IR
Sbjct: 120 TTVALAINYGGKDEILRAVKKVLCSTSCPDGEL----LTEEAFGACLDAPQLPSVDFLIR 175
Query: 214 TGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
TGG+ R+SNFLL+Q AY+E +F D+ +P+FR D LR + E++ R R FG
Sbjct: 176 TGGQQRMSNFLLWQSAYAEFYFTDILWPDFRVEDMLRALDEYRLRTRTFG 225
>pir||H81354 probable undecaprenyl diphosphate synthase Cj0824 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968270|emb|CAB73089.1| (AL139076) putative
undecaprenyl diphosphate synthase [Campylobacter jejuni]
Length = 222
Score = 154 bits (386), Expect = 9e-37
Identities = 83/229 (36%), Positives = 139/229 (60%), Gaps = 11/229 (4%)
Query: 36 KHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRS 95
KH+A++MDGNRRWA+ + G+ G K +++++E C E I L+++AFSTEN+KR
Sbjct: 5 KHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRP 64
Query: 96 KEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNN 155
K+E++ + +L ++ E + ++ + VR+ IG L VR+ E T+ +
Sbjct: 65 KDEIDFIFELLDRCLDEAL--EKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDA 122
Query: 156 YVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTG 215
+N+AI+YG R EI+ A K ++ + +++EE L + L +P D D+++R G
Sbjct: 123 LCVNLAISYGARDEIIRAAKRVIEKKL-------ELNEENLTQNLDLP--LDVDLMLRVG 173
Query: 216 GEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
R+SNFLL+Q +Y+E++F + FP K +F RII+EF+ RER FG+
Sbjct: 174 NAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRERTFGK 222
>gi|6319474 cis-prenyltransferase; Rer2p [Saccharomyces cerevisiae]
>gi|465535|sp|P35196|RER2_YEAST DEHYDRODOLICHYL
DIPHOSPHATE SYNTHETASE (DEDOL-PP SYNTHASE)
>gi|626491|pir||S44561 hypothetical protein YBR002c -
yeast (Saccharomyces cerevisiae)
>gi|403317|emb|CAA81271.1| (Z26494) unknown
[Saccharomyces cerevisiae] >gi|536188|emb|CAA84938.1|
(Z35871) ORF YBR002c [Saccharomyces cerevisiae]
>gi|4126457|dbj|BAA36577.1| (AB013497)
cis-prenyltransferase [Saccharomyces cerevisiae]
>gi|1582565|prf||2118405F ORF YBR0107 [Saccharomyces
cerevisiae]
Length = 286
Score = 151 bits (377), Expect = 1e-35
Identities = 86/225 (38%), Positives = 126/225 (55%), Gaps = 7/225 (3%)
Query: 34 LPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFK 93
+P+HV IMDGNRR+A+K+E GH G + ILE C+E G+ TV+AFS ENFK
Sbjct: 31 VPRHVGFIMDGNRRFARKKEMDVKEGHEAGFVSMSRILELCYEAGVDTATVFAFSIENFK 90
Query: 94 RSKEEVERLMQLFEQKFRELV-TDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRK 152
RS EVE LM L ++ R++ + +YGVR+ +IG LL KS+ + A T+
Sbjct: 91 RSSREVESLMTLARERIRQITERGELACKYGVRIKIIGDLSLLDKSLLEDVRVAVETTKN 150
Query: 153 YNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVI 212
LN+ Y GR EI+ A+K+ + G IDE L+ +LY +P D++I
Sbjct: 151 NKRATLNICFPYTGREEILHAMKETIVQHKKGAA----IDESTLESHLYTAGVPPLDLLI 206
Query: 213 RTGGEVRISNFLLYQIAYS--ELFFVDVYFPEFRKIDFLRIIREF 255
RT G R+S+FL++Q + + +D +PEF I I+ +F
Sbjct: 207 RTSGVSRLSDFLIWQASSKGVRIELLDCLWPEFGPIRMAWILLKF 251
>gb|AAD29658.1|AF124757_18 (AF124757) unknown [Zymomonas mobilis]
Length = 222
Score = 148 bits (369), Expect = 8e-35
Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 2/222 (0%)
Query: 42 MDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVER 101
MDGN RWA R P GH G+ ++ + E+GI +LT+YAFS+EN++R EV
Sbjct: 1 MDGNGRWASARHLPRIAGHKKGADAVKTTVRAAAEMGIEVLTLYAFSSENWRRPASEVAD 60
Query: 102 LMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVA 161
LM L R+ + + + E G+ + VIG L + + +A T L A
Sbjct: 61 LMGLLRLCLRQEMHN--IKERGICLKVIGDYTRLDQDLVALLNQAIEITANNTRLTLVFA 118
Query: 162 IAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRIS 221
+ YG + E+V K I +G+L E+ID ++ LY ++P D+VIRT GE R+S
Sbjct: 119 LNYGAQDELVHVTKRIAEKAKEGQLDPENIDVGTIESLLYTHDLPPLDLVIRTSGEKRLS 178
Query: 222 NFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
NFLL+Q AY+EL F+D +P+F + E+ +RERR+G
Sbjct: 179 NFLLWQAAYAELLFIDTLWPDFGSETLKAAVEEYARRERRYG 220
>sp|P38118|YARF_CORGL HYPOTHETICAL 26.1 KD PROTEIN IN AROF 3'REGION
Length = 234
Score = 130 bits (323), Expect = 2e-29
Identities = 80/210 (38%), Positives = 117/210 (55%), Gaps = 15/210 (7%)
Query: 43 DGNRRWAKKRE-KPPWYGHLFGSKKLEEILEWCHELGIRILT--VYAFSTENFKRSKEEV 99
DGNRRWA++ +GH G+K+ + WC + R + VY S EN RS EE+
Sbjct: 3 DGNRRWAREAGFTDVSHGHRVGAKRSRDG-RWCAGVMSRRQSRDVYLLSMENLGRSSEEL 61
Query: 100 ERLMQLFEQKFRELVTDKRVH-EYGVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVL 158
+ L + + V D+ E RV ++G +L+P V +AE AT +
Sbjct: 62 QLLFDIAD------VADELARPETKCRVRLVGHLDLVPDPVACRLRKAEEATVNNTGIAV 115
Query: 159 NVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEEL----LKKYLYVPNMPDPDIVIRT 214
N+A+ YGGR EIVDAV+ ++ D L V+++ E + + +LY PDPD+VIRT
Sbjct: 116 NMAVGYGGRQEIVDAVQKLLTIGKDEGLSVDELIESVKVDAISTHLYTSGQPDPDLVIRT 175
Query: 215 GGEVRISNFLLYQIAYSELFFVDVYFPEFR 244
GE R+S F+L+Q AYSE++F D Y+P FR
Sbjct: 176 SGEQRLSGFMLWQSAYSEIWFTDTYWPAFR 205
>gi|6323748 cis-prenyltransferase homologue; Srt1p [Saccharomyces cerevisiae]
>gi|2501565|sp|Q03175|SRT1_YEAST PUTATIVE
DEHYDRODOLICHYL DIPHOSPHATE SYNTHETASE (DEDOL-PP
SYNTHASE) >gi|1078518|pir||S55087 hypothetical protein
YMR101c - yeast (Saccharomyces cerevisiae)
>gi|854438|emb|CAA89902.1| (Z49807) unknown
[Saccharomyces cerevisiae] >gi|4126459|dbj|BAA36578.1|
(AB013498) cis-prenyltransferase homologue
[Saccharomyces cerevisiae]
Length = 343
Score = 129 bits (322), Expect = 3e-29
Identities = 73/226 (32%), Positives = 127/226 (55%), Gaps = 5/226 (2%)
Query: 22 ERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHELGIRI 81
+ L++ ++ G +P+HV+ IMDGNRR+AK R P GH G L +L C LG++
Sbjct: 54 QNILIKALRVGPVPEHVSFIMDGNRRYAKSRRLPVKKGHEAGGLTLLTLLYICKRLGVKC 113
Query: 82 LTVYAFSTENFKRSKEEVERLMQLFEQK---FRELVTDKRVHEYGVRVNVIGRKELLPKS 138
++ YAFS ENF R KEEV+ LM LF K F + D + YG ++ ++G + LL
Sbjct: 114 VSAYAFSIENFNRPKEEVDTLMNLFTVKLDEFAKRAKDYKDPLYGSKIRIVGDQSLLSPE 173
Query: 139 VRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKK 198
+R ++ E T+ +++ L + Y R++++ ++D V D ++ K +I + K
Sbjct: 174 MRKKIKKVEEITQDGDDFTLFICFPYTSRNDMLHTIRDSVEDHLENKSPRINIRKFTNKM 233
Query: 199 YLYVPNMPDPDIVIRTGGEVRISNFLLYQI-AYSELFFVDVYFPEF 243
Y+ + +++IRT G R+S+++L+Q+ + + F D +P F
Sbjct: 234 YMGF-HSNKCELLIRTSGHRRLSDYMLWQVHENATIEFSDTLWPNF 278
>dbj|BAB08234.1| (AB011483) undecaprenyl pyrophosphate synthetase-like protein
[Arabidopsis thaliana]
Length = 251
Score = 126 bits (313), Expect = 3e-28
Identities = 83/245 (33%), Positives = 135/245 (54%), Gaps = 14/245 (5%)
Query: 23 RYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPW-YGHLFGSKKLEEILEWCHELGIRI 81
+++ + ++ G +P +++ IMDGNRR+AKKR GH G ++ IL++C E+G+
Sbjct: 3 KFIFKVLRVGPIPTNISFIMDGNRRFAKKRNLEGLDAGHRAGFISVKYILQYCKEIGVPY 62
Query: 82 LTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRV--HEYGVRVNVIGRKELLPKSV 139
+T+YAF +NFKR EEV+ +M L +K EL D+ V + GVR+ G L +
Sbjct: 63 VTLYAFGMDNFKRGPEEVKCVMDLMLEKV-ELTIDQAVSGNMNGVRIIFAGDLNSLNERF 121
Query: 140 RDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKD-IVRDVMDG----KLRVEDIDEE 194
R A ++ T + + ++ V +AY EIV AV+D VR G L + DI+E
Sbjct: 122 RAATKKLMELTEENRDLIVVVCVAYSTSVEIVHAVRDSCVRKSKTGDGSSALELSDIEE- 180
Query: 195 LLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIRE 254
+Y +P PD+V+RTGG R+SNF+ +Q + + L + +PE + I +
Sbjct: 181 ----CMYTSVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHRTEALWPELGLWHLVWAILK 236
Query: 255 FQKRE 259
FQ+ +
Sbjct: 237 FQRMQ 241
>dbj|BAB08233.1| (AB011483) undecaprenyl pyrophosphate synthetase-like protein
[Arabidopsis thaliana]
Length = 251
Score = 122 bits (302), Expect = 6e-27
Identities = 83/245 (33%), Positives = 133/245 (53%), Gaps = 14/245 (5%)
Query: 23 RYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPW-YGHLFGSKKLEEILEWCHELGIRI 81
++L + G +P +++ IMDGNRR+AKK GH G ++ IL++C E+G+
Sbjct: 3 KFLFRVLCVGPIPTNISFIMDGNRRFAKKHNLIGLDAGHRAGFISVKYILQYCKEIGVPY 62
Query: 82 LTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKRV--HEYGVRVNVIGRKELLPKSV 139
+T++AF +NFKR EEV+ +M L +K EL D+ V + GVR+ G + L +
Sbjct: 63 VTLHAFGMDNFKRGPEEVKCVMDLMLEKV-ELAIDQAVSGNMNGVRIIFAGDLDSLNEHF 121
Query: 140 RDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAV-KDIVRDVMDGK----LRVEDIDEE 194
R A ++ T + + ++ V +AY EIV AV K VR +G L + D++E
Sbjct: 122 RAATKKLMELTEENRDLIVVVCVAYSTSLEIVHAVRKSCVRKCTNGDDLVLLELSDVEE- 180
Query: 195 LLKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIRE 254
+Y +P PD+VIRTGG R+SNF+ +Q + S L + +PE + I +
Sbjct: 181 ----CMYTSIVPVPDLVIRTGGGDRLSNFMTWQTSRSLLHRTEALWPELGLWHLVWAILK 236
Query: 255 FQKRE 259
FQ+ +
Sbjct: 237 FQRMQ 241
>gb|AAA96784.1| (U51683) ORF1; open reading frame in cdsA 5' region; hypothetical
protein [Brucella abortus]
Length = 153
Score = 109 bits (270), Expect = 3e-23
Identities = 56/126 (44%), Positives = 75/126 (59%)
Query: 138 SVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLK 197
++R EAE T + L +A YG R EIV AV+ + RDV G L I EL+
Sbjct: 4 NIRALLNEAESLTHRNTGLNLVIAFNYGSRDEIVRAVRSLARDVAAGLLDPSSISAELVS 63
Query: 198 KYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQK 257
L +PDPD++IRT GE+R+SNFLL+Q AYSE F+ ++P+FR D F++
Sbjct: 64 ANLDTAGIPDPDLIIRTSGEMRLSNFLLWQAAYSEFLFLPCHWPDFRPADLDAAYETFRQ 123
Query: 258 RERRFG 263
RERRFG
Sbjct: 124 RERRFG 129
>gb|AAB61966.1| (U60831) ORF1 [Haemophilus influenzae]
Length = 106
Score = 99.1 bits (243), Expect = 5e-20
Identities = 48/103 (46%), Positives = 67/103 (64%)
Query: 161 AIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRI 220
A YGG +I+ A K I V ++ V DI+ + +L N P D++IRT GE RI
Sbjct: 1 AANYGGCWDIIQAAKQIAEKVKKEEMSVSDINNSTFQHHLATQNAPPVDLLIRTSGEQRI 60
Query: 221 SNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFG 263
SNFLL+QIAY+EL+F DV +P+F +++F R I +Q+R RRFG
Sbjct: 61 SNFLLWQIAYAELYFSDVLWPDFNQLEFNRAIASYQQRHRRFG 103
>gb|AAG20003.1| (AE005081) Vng1781c [Halobacterium sp. NRC-1]
Length = 326
Score = 93.6 bits (229), Expect = 2e-18
Identities = 45/107 (42%), Positives = 73/107 (68%), Gaps = 3/107 (2%)
Query: 158 LNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGE 217
+ V++ +GG+ E AV+ + V G L + IDE++++ L P +PD+VI+TG E
Sbjct: 223 IQVSVGHGGKHEFATAVRSVADAVAAGDLDPDAIDEDVIESELVFP--AEPDLVIKTGAE 280
Query: 218 VRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
R+S+F+++Q YSEL+F DV + +FRK D+LR + ++Q R+RRFGR
Sbjct: 281 -RLSDFMIWQSVYSELYFTDVNWRDFRKRDYLRAVLDYQNRQRRFGR 326
>gi|11498314 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483044|pir||C69338 conserved hypothetical protein
AF0707 - Archaeoglobus fulgidus
>gi|2649909|gb|AAB90534.1| (AE001056) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 207
Score = 90.9 bits (222), Expect = 1e-17
Identities = 42/103 (40%), Positives = 72/103 (69%), Gaps = 4/103 (3%)
Query: 162 IAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPDIVIRTGGEVRIS 221
+ + GR EI++ V+ + + V G+L V+++DE L +K+L + + PD++I+ G + I
Sbjct: 109 LTFTGREEIINVVRKVAKMVERGELEVDEVDENLFEKFLTIKS--PPDMIIKAGND--IP 164
Query: 222 NFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
+FL++Q Y+EL+F D+ + R DFLRI+RE+Q+RERR+GR
Sbjct: 165 DFLIWQGIYAELYFADIDWQNLRYADFLRILREYQRRERRYGR 207
>pir||JQ0426 hypothetical 14.2K protein - Streptomyces fradiae transposon Tn4556
>gi|1196916|gb|AAA88567.1| (M29297) unknown protein
[Streptomyces fradiae]
Length = 125
Score = 88.2 bits (215), Expect = 1e-16
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 18 YDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKP-PWYGHLFGSKKLEEILEWCHE 76
Y LY R L + AG LPKH+ +IMDGNRRWA++ P GH +G++ +E +L WC
Sbjct: 8 YALYARRLRRQTAAGPLPKHIGLIMDGNRRWARQMGMANPSIGHRYGAEHVESVLSWCET 67
Query: 77 LGIRILTVYAFSTENF-KRSKEEVERLMQLFEQ 108
GI+ +TV+ STEN +R EV LMQ+ EQ
Sbjct: 68 AGIKHVTVFVCSTENLQRRGDTEVSFLMQVIEQ 100
>pir||H72615 hypothetical protein APE1385 - Aeropyrum pernix (strain K1)
>gi|5105068|dbj|BAA80382.1| (AP000061) 219aa long
hypothetical protein [Aeropyrum pernix]
Length = 219
Score = 81.1 bits (197), Expect = 1e-14
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 24/235 (10%)
Query: 35 PKHVAIIMDGNRRWAKKREKPPWYGHLFGSKKLEEILEWCHEL--GIRILTVYAFSTENF 92
P+ + II DGNRRWA R + + + G + ++ IL + + IR + +Y S +N
Sbjct: 4 PRAIGIIPDGNRRWASLRGENLYIAYYTGYRNVKRILTYIRDFYPAIRSVYLYVLSRDNC 63
Query: 93 -KRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIG--RKELLPKSVRDAAEEAERA 149
KRS+ E+ L ++ + + + + + G + ++G LP ++R++ A
Sbjct: 64 SKRSRAELSILYRIMRRSIERDIAE--IEKGGASLVIVGDINHPNLPDNIRESL-----A 116
Query: 150 TRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVMDGKLRVEDIDEELLKKYLYVPNMPDPD 209
++ Y+ ++ GR + D ++ E K L + + D
Sbjct: 117 PYHFDMYLKKGSLP-DGRRVVAGLCYDPFWEI-----------EHYTPKTLPSRLLDEID 164
Query: 210 IVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
+VIRTGGE R+S+F Y+EL+F+D +P+F + D R ++ F R R GR
Sbjct: 165 LVIRTGGEKRLSSFFPLLTRYAELYFIDKLWPDFTREDLDRAVQWFSTRRRPMGR 219
>gb|AAD09946.1| (AF064963) unknown [Coxiella burnetii]
Length = 157
Score = 69.1 bits (166), Expect = 5e-11
Identities = 43/136 (31%), Positives = 71/136 (51%), Gaps = 7/136 (5%)
Query: 35 PKHVAIIMDGNRRWA---KKREKPPWYGHLFGSKKLEEILEWCHELGIRILTVYAFSTEN 91
P+HVAI+M R+W+ +R P GH G+K + I+E+ E + +LT++AFS EN
Sbjct: 26 PRHVAIVM--GRQWSGGLTRRGLPRVAGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIEN 83
Query: 92 FKRSKEEVERLMQLFEQKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAAEEAERATR 151
R + EV LM LF ++ + +H+ V++ VIG K + + ++ T+
Sbjct: 84 RARPQSEVNFLMSLFLDSLKK--NTEELHKNNVQLRVIGDHREFDKKMLAQIQTSQDLTK 141
Query: 152 KYNNYVLNVAIAYGGR 167
L +A+ Y GR
Sbjct: 142 HNTGLKLIIALNYSGR 157
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.144 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98907575
Number of Sequences: 2977
Number of extensions: 4261814
Number of successful extensions: 12374
Number of sequences better than 1.0e-10: 69
Number of HSP's better than 0.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12203
Number of HSP's gapped (non-prelim): 70
length of query: 264
length of database: 189,106,746
effective HSP length: 52
effective length of query: 212
effective length of database: 157,985,422
effective search space: 33492909464
effective search space used: 33492909464
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)