BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0400 (mrp-like) DE:MRP PROTEIN HOMOLOG
(242 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75178 mrp protein homolog PAB0400 - Pyrococcus abyssi (str... 479 e-134
pir||D71036 probable ATP-binding protein - Pyrococcus horikoshii... 414 e-115
sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3'REGI... 142 4e-33
pir||B83210 conserved hypothetical protein PA3481 [imported] - P... 138 6e-32
gb|AAF51623.1| (AE003591) CG4858 gene product [Drosophila melano... 136 2e-31
gi|11499850 nucleotide-binding protein [Archaeoglobus fulgidus] ... 135 4e-31
gb|AAK40784.1| MRP protein homolog, conserved ATPase (mrp) [Sulf... 132 5e-30
sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 ... 130 2e-29
gi|11499959 nucleotide-binding protein [Archaeoglobus fulgidus] ... 128 5e-29
sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A64114 ... 126 3e-28
gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacteriu... 125 6e-28
pir||S11948 mrp protein - Escherichia coli >gi|42017|emb|CAA3931... 123 2e-27
sp|P21590|MRP_ECOLI MRP PROTEIN >gi|7446818|pir||H64978 probable... 123 2e-27
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199... 123 2e-27
pir||E82249 mrp protein VC1037 [imported] - Vibrio cholerae (gro... 122 3e-27
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 ... 122 4e-27
pir||E72780 probable nucleotide-binding protein APE0230 - Aeropy... 122 4e-27
pir||F81036 Mrp/NBP35 family protein NMB1846 [imported] - Neisse... 120 2e-26
pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria ... 120 2e-26
sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir... 118 5e-26
pir||B82576 polysaccharide export protein XF2301 [imported] - Xy... 118 8e-26
emb|CAC01353.1| (AL390975) putative ATP-binding protein [Strepto... 117 1e-25
sp|Q9ZE27|MRP_RICPR MRP PROTEIN HOMOLOG >gi|7467663|pir||G71721 ... 116 3e-25
pir||D75131 mrp-family probable nucleotide-binding protein PAB17... 114 9e-25
pir||E72233 conserved hypothetical protein - Thermotoga maritima... 114 1e-24
emb|CAC12597.1| (AL445067) probable nucleotide-binding protein [... 114 1e-24
dbj|BAB03959.1| (AP001507) ATP-binding Mrp protein (Mrp/Nbp35 fa... 113 2e-24
pir||F75448 mrp protein - Deinococcus radiodurans (strain R1) >g... 113 3e-24
pir||T06147 hypothetical protein F24J7.100 - Arabidopsis thalian... 112 3e-24
sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir... 112 3e-24
sp|P50863|MRP_BACSU MRP PROTEIN HOMOLOG >gi|7446824|pir||A69743 ... 111 8e-24
sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 ... 111 8e-24
pir||G69023 nucleotide-binding protein, probable ATPase - Methan... 110 2e-23
dbj|BAB08742.1| (AB017063) nucleotide-binding protein [Arabidops... 109 3e-23
gi|6322188 Yil003wp [Saccharomyces cerevisiae] >gi|731773|sp|P40... 109 4e-23
pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (... 107 2e-22
sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ... 104 8e-22
dbj|BAB14203.1| (AK022722) unnamed protein product [Homo sapiens] 104 1e-21
gi|6754908 nucleotide binding protein 2 [Mus musculus] >gi|60181... 103 2e-21
emb|CAB71141.1| (AJ271724) hypothetical protein OrfA [Eubacteriu... 103 2e-21
pir||T39000 probable nucleotide binding protein - fission yeast ... 102 4e-21
pir||D81256 probable ATP/GTP-binding protein (mrp protein homolo... 102 5e-21
gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo... 101 1e-20
dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens] 101 1e-20
emb|CAC04440.1| (AL391572) related to nucleotide-binding protein... 101 1e-20
gb|AAF57258.1| (AE003783) CG3262 gene product [Drosophila melano... 99 4e-20
gi|4505337 nucleotide binding protein 1 (E.coli MinD like); nucl... 98 1e-19
gi|6754906 nucleotide binding protein 1 [Mus musculus] >gi|60181... 97 2e-19
gi|11431846 nucleotide binding protein 1 (E.coli MinD like) [Hom... 96 3e-19
gi|6321347 35 kDa nucleotide binding protein; Nbp35p [Saccharomy... 92 4e-18
pir||T39094 WD domain, G-beta repeat protein - fission yeast (S... 92 7e-18
emb|CAC14524.1| (AL446004) MRP-family nucleotide-binding protein... 91 1e-17
pir||JC5219 nuclear binding protein 35 - yeast (Saccharomyces ce... 91 1e-17
gb|AAF53559.1| (AE003652) CG17904 gene product [Drosophila melan... 82 5e-15
emb|CAA86248.1| (Z38113) incomplete orf, len: 160, CAI: 0.09 sim... 82 8e-15
sp|Q93459|MRPL_CAEEL MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING PROT... 80 2e-14
sp|P53381|MRP_CLOPE MRP PROTEIN HOMOLOG >gi|1149678|emb|CAA60227... 75 8e-13
pir||A72319 conserved hypothetical protein - Thermotoga maritima... 68 8e-11
>pir||A75178 mrp protein homolog PAB0400 - Pyrococcus abyssi (strain Orsay)
>gi|5458014|emb|CAB49504.1| (AJ248284) MRP PROTEIN
HOMOLOG [Pyrococcus abyssi]
Length = 242
Score = 479 bits (1219), Expect = e-134
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MIDPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGAS 60
MIDPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGAS
Sbjct: 1 MIDPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGAS 60
Query: 61 DHVILGFEPKEFPEEDRGVVPPIVHGVKFMTIAYYTENRPTPLRGKEISDALIELLTITR 120
DHVILGFEPKEFPEEDRGVVPPIVHGVKFMTIAYYTENRPTPLRGKEISDALIELLTITR
Sbjct: 61 DHVILGFEPKEFPEEDRGVVPPIVHGVKFMTIAYYTENRPTPLRGKEISDALIELLTITR 120
Query: 121 WDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREIL 180
WDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREIL
Sbjct: 121 WDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREIL 180
Query: 181 GIIENMKLDEEEDVKRIAEKYGVKYLTGIKFYPGLESKIGNVDELLRSEFAEKIREVANT 240
GIIENMKLDEEEDVKRIAEKYGVKYLTGIKFYPGLESKIGNVDELLRSEFAEKIREVANT
Sbjct: 181 GIIENMKLDEEEDVKRIAEKYGVKYLTGIKFYPGLESKIGNVDELLRSEFAEKIREVANT 240
Query: 241 LV 242
LV
Sbjct: 241 LV 242
>pir||D71036 probable ATP-binding protein - Pyrococcus horikoshii
>gi|3258009|dbj|BAA30692.1| (AP000006) 242aa long
hypothetical ATP-binding protein [Pyrococcus horikoshii]
Length = 242
Score = 414 bits (1054), Expect = e-115
Identities = 203/242 (83%), Positives = 225/242 (92%)
Query: 1 MIDPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGAS 60
MIDPR+IAIS+RLEKVRNVIPV SGKGGVGKSLISTTLAL+L E+G+KVGLLDLDFHGAS
Sbjct: 1 MIDPREIAISSRLEKVRNVIPVVSGKGGVGKSLISTTLALLLREKGYKVGLLDLDFHGAS 60
Query: 61 DHVILGFEPKEFPEEDRGVVPPIVHGVKFMTIAYYTENRPTPLRGKEISDALIELLTITR 120
DHVILGFEPKEFPEED+GVVPP V+GVKFMTI YYTEN+PTPLRGKE+SDALIELLTITR
Sbjct: 61 DHVILGFEPKEFPEEDKGVVPPEVNGVKFMTIVYYTENKPTPLRGKEVSDALIELLTITR 120
Query: 121 WDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREIL 180
WDELDYL+IDMPPGLGDPFLDVLRFL RGKFIVVATPSKLALNVVEKLIQLLK+ENREIL
Sbjct: 121 WDELDYLVIDMPPGLGDPFLDVLRFLKRGKFIVVATPSKLALNVVEKLIQLLKEENREIL 180
Query: 181 GIIENMKLDEEEDVKRIAEKYGVKYLTGIKFYPGLESKIGNVDELLRSEFAEKIREVANT 240
GIIENMKLDEEEDVK +A+++G+ YL G+ FY LE KIG V+ELL++ FA+K+REV
Sbjct: 181 GIIENMKLDEEEDVKNLAKRHGINYLLGVPFYRDLEEKIGKVEELLKTPFADKLREVIKV 240
Query: 241 LV 242
LV
Sbjct: 241 LV 242
>sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3'REGION
>gi|1513082|gb|AAC45998.1| (U62986) ATPase [Pseudomonas
fragi]
Length = 287
Score = 142 bits (354), Expect = 4e-33
Identities = 81/212 (38%), Positives = 123/212 (57%), Gaps = 15/212 (7%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
L V+N++ V+SGKGGVGKS + LAL LA G +VG+LD D +G S V+ G
Sbjct: 35 LANVKNIVAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGVMFGIAEGTR 94
Query: 73 PE--EDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLII 129
P+ + + VP HGV+ M++A+ T+ N P RG +S AL++L+T T W++LDYL+I
Sbjct: 95 PKIRDQKWFVPIEAHGVEVMSMAFLTDDNTPMVWRGPMVSGALLQLVTQTAWNDLDYLVI 154
Query: 130 DMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM--- 186
DMPPG GD L + + + ++V TP LAL K +++ + N +LG++ENM
Sbjct: 155 DMPPGTGDIQLTLAQKVPVAGSVIVTTPQDLALLDARKGVEMFRKVNIPVLGVVENMAVH 214
Query: 187 ---------KLDEEEDVKRIAEKYGVKYLTGI 209
L E +++A +YGV+ L +
Sbjct: 215 ICSNCGHAEHLFGEGGGEKLATQYGVEVLASL 246
>pir||B83210 conserved hypothetical protein PA3481 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949626|gb|AAG06869.1|AE004769_2 (AE004769)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 364
Score = 138 bits (344), Expect = 6e-32
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 15/209 (7%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPE- 74
V+N++ V+SGKGGVGKS + LAL LA G +VG+LD D +G S ++ G P+
Sbjct: 98 VKNIVAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGIMFGLPEGTRPKV 157
Query: 75 -EDRGVVPPIVHGVKFMTIAYYTENR-PTPLRGKEISDALIELLTITRWDELDYLIIDMP 132
E + P HGV+ M++A+ T++ P RG +S ALI+L+T T WD LDYL++DMP
Sbjct: 158 REQKWFEPLEAHGVQVMSMAFLTDDSTPVVWRGPMVSGALIQLITQTAWDNLDYLVVDMP 217
Query: 133 PGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM------ 186
PG GD L + + + ++V TP LAL +K +++ + N +LG++ENM
Sbjct: 218 PGTGDIQLTLAQKVPVAGAVIVTTPQDLALLDAKKGVEMFRKVNIPVLGVVENMAVHICS 277
Query: 187 ------KLDEEEDVKRIAEKYGVKYLTGI 209
L E +++A ++GV+ L +
Sbjct: 278 NCGHAEHLFGEGGGEKLAAQFGVELLASM 306
>gb|AAF51623.1| (AE003591) CG4858 gene product [Drosophila melanogaster]
Length = 260
Score = 136 bits (340), Expect = 2e-31
Identities = 83/182 (45%), Positives = 110/182 (59%), Gaps = 8/182 (4%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
L+KV+NVI V SGKGGVGKS +ST L+L L + GFKVGLLD+D G S +LG E ++
Sbjct: 2 LDKVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDI 61
Query: 73 PEEDRGVVPPIV---HGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDELDYL 127
+ D G VP + M+I + +NR P+ RG + + + + LT RWDELDYL
Sbjct: 62 FQCDDGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYL 121
Query: 128 IIDMPPGLGDPFLDV---LRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
IID PPG D + V L+ +G I+V TP ++AL+ V K I K ILGI+E
Sbjct: 122 IIDTPPGTSDEHITVMECLKEVGCHGAIIVTTPQEVALDDVRKEITFCKKTGINILGIVE 181
Query: 185 NM 186
NM
Sbjct: 182 NM 183
>gi|11499850 nucleotide-binding protein [Archaeoglobus fulgidus]
>gi|7446826|pir||E69533 nucleotide-binding protein
homolog - Archaeoglobus fulgidus
>gi|2648251|gb|AAB88984.1| (AE000948) nucleotide-binding
protein [Archaeoglobus fulgidus]
Length = 254
Score = 135 bits (337), Expect = 4e-31
Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 18/234 (7%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFE 68
I RL+K+ I V SGKGGVGKS ++ LA+ A++G KVG+LD DF G S + G E
Sbjct: 10 IKERLDKIGFRIAVMSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPSIPHLFGLE 69
Query: 69 PKEFPEEDRGVVPPIVH--GVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDEL 124
+ D G+ P + G+K M+I + R TP+ RG I+ + E L W EL
Sbjct: 70 KGKVAVSDEGLEPVLTQRLGIKVMSIQFLLPKRETPVIWRGPLIAGMIREFLGRVAWGEL 129
Query: 125 DYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
DYL+ID+PPG GD L V++ ++V+TP +L VVEK I + + +LGI+E
Sbjct: 130 DYLLIDLPPGTGDAPLTVMQDAKPNGAVIVSTPQELTAAVVEKAITMAEQTKTAVLGIVE 189
Query: 185 NMKLDE------------EEDVKRIAEKYGVKYLTGIKFYPGL--ESKIGNVDE 224
NM E E +A KY ++++T I L S +G V+E
Sbjct: 190 NMAYFECPNCGERTYLFGEGKASELARKYKIEFITEIPIDSDLLKLSDLGRVEE 243
>gb|AAK40784.1| MRP protein homolog, conserved ATPase (mrp) [Sulfolobus
solfataricus]
Length = 296
Score = 132 bits (328), Expect = 5e-30
Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 16/225 (7%)
Query: 7 IAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILG 66
+ + +++ ++ I V SGKGGVGKS +S+ LA+ +A G KVG++D+DFHG S +LG
Sbjct: 34 LKVQMKMKNIKYKIGVVSGKGGVGKSFVSSNLAMAIAASGRKVGIVDVDFHGPSVPKMLG 93
Query: 67 FEPKEFPEEDRGVVPPI-VHGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDE 123
+ +D+G+ P I G+K ++I + TP+ RG A+ + L W E
Sbjct: 94 VRGQMLTADDKGINPVIGPFGIKVVSIDFLLPRDDTPVVWRGAIKHSAIKQFLGDVNWGE 153
Query: 124 LDYLIIDMPPGLGDPFLDVLRFL-GRGKFIVVATPSKLALNVVEKLIQLLKDENREILGI 182
LDYLIIDMPPG GD L + + + G F++V PS+++ V+K I + N +ILG+
Sbjct: 154 LDYLIIDMPPGTGDEALSIAQLVPGITGFVIVTIPSEVSTLAVKKSINFARTVNTKILGV 213
Query: 183 IENMK------------LDEEEDVKRIAEKYGVKYLTGIKFYPGL 215
+ENM + E K++AE+ GV L + P +
Sbjct: 214 VENMSHFVCPSDGKVYYIFGEGKGKKMAEEMGVDLLGQVPLDPSI 258
>sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 conserved hypothetical
protein aq_737 - Aquifex aeolicus
>gi|2983325|gb|AAC06915.1| (AE000705) hypothetical
protein [Aquifex aeolicus]
Length = 364
Score = 130 bits (323), Expect = 2e-29
Identities = 79/245 (32%), Positives = 133/245 (54%), Gaps = 19/245 (7%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFP-E 74
V+++I V SGKGGVGKS ++ LA+ L++ G+KVGLLD D +G S + G + + +
Sbjct: 111 VKHIIAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPSVPTLFGLKGERVTVD 170
Query: 75 EDRGVVPPIVHGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDELDYLIIDMP 132
+ + ++P +G+K ++I + + TP+ RG + AL E L T+W LD+L++D+P
Sbjct: 171 QFQRIIPVEKYGLKILSIGFMLPSEDTPIIWRGPMLMKALTEFLFSTKWGNLDFLVMDLP 230
Query: 133 PGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL---- 188
PG GD + + + + +VV TP +AL V+K + + ++ N +LG+IENM
Sbjct: 231 PGTGDVQITLAQNVELTGAVVVTTPQDVALADVKKAVSMFREVNIPVLGVIENMAYFICP 290
Query: 189 -DEEE-------DVKRIAEKYGVKYLTGIKFYPGLESKIGNVDELL----RSEFAEKIRE 236
D+++ V A YG+K L I P + K + ++ SE A+
Sbjct: 291 SDKQKYYIFGKGKVAEFANAYGLKILGSIPIDPEVAEKSDKGEPIVISHPDSEVAKAFLS 350
Query: 237 VANTL 241
+A L
Sbjct: 351 IAKVL 355
>gi|11499959 nucleotide-binding protein [Archaeoglobus fulgidus]
>gi|7446827|pir||F69547 nucleotide-binding protein
homolog - Archaeoglobus fulgidus
>gi|2650714|gb|AAB91283.1| (AE001112) nucleotide-binding
protein [Archaeoglobus fulgidus]
Length = 254
Score = 128 bits (319), Expect = 5e-29
Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFE 68
I RL K+++ I V SGKGGVGKS ++ LA+ A +G KVG+LD DF G S ++ G
Sbjct: 10 IKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLR 69
Query: 69 PKEFPEEDRGVVPPIV--HGVKFMTIAYYT--ENRPTPLRGKEISDALIELLTITRWDEL 124
G+ P + +G+K M++ + EN P RG I+ + E L W EL
Sbjct: 70 NARIAVSAEGLEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGEL 129
Query: 125 DYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
D+L+ID+PPG GD L V++ +VV+TP +L +VEK I + ++ N +LG++E
Sbjct: 130 DHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVE 189
Query: 185 NMK------------LDEEEDVKRIAEKYGVKYLTGI 209
NM + E + +A+KY + + T I
Sbjct: 190 NMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSI 226
>sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A64114 probable ATPase mrp -
Haemophilus influenzae (strain Rd KW20)
>gi|1574732|gb|AAC22925.1| (U32807) ATP-binding protein
(mrp) [Haemophilus influenzae Rd]
Length = 386
Score = 126 bits (313), Expect = 3e-28
Identities = 81/211 (38%), Positives = 114/211 (53%), Gaps = 14/211 (6%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEE 75
V+N+I VSSGKGGVGKS +S LAL L +G +VG+LD D +G S +LG +
Sbjct: 122 VKNIIAVSSGKGGVGKSSVSVNLALALQAQGARVGILDADIYGPSIPHMLGAADQRPTSP 181
Query: 76 DRGVVPPI-VHGVKFMTIAYY-TENRPTPLRGKEISDALIELLTITRWDELDYLIIDMPP 133
D + PI HG+ +I + E+ T RG S AL +LL T WD LDYL+IDMPP
Sbjct: 182 DNQHITPIKAHGLSANSIGFLMNEDSATIWRGPMASSALSQLLNETLWDSLDYLVIDMPP 241
Query: 134 GLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKLDEEED 193
G GD L + + + +VV TP +AL K I + + + +LGI+ENM + +
Sbjct: 242 GTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAVKGISMFERVSVPVLGIVENMSMHICSE 301
Query: 194 ------------VKRIAEKYGVKYLTGIKFY 212
+++AEKY VK L + +
Sbjct: 302 CGHHEAIFGTGGAEKMAEKYNVKVLAQLPLH 332
>gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacterium sp. NRC-1]
Length = 343
Score = 125 bits (310), Expect = 6e-28
Identities = 65/175 (37%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
L V+NV+ V+SGKGGVGKS ++ LA L++RG +VGL D D +G + ++ +
Sbjct: 85 LPGVKNVVAVASGKGGVGKSTVAVNLAAALSDRGARVGLFDADIYGPNVPRMVDADDHPQ 144
Query: 73 PEEDRGVVPPIVHGVKFMTIAYYT-ENRPTPLRGKEISDALIELLTITRWDELDYLIIDM 131
E +VPP HG+K M++A+ E+ P RG + L +L+ W LDYL++D+
Sbjct: 145 ATETETIVPPEKHGMKLMSMAFMVGEDDPVIWRGPMVHKVLTQLIEDVEWGYLDYLVVDL 204
Query: 132 PPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
PPG GD L +L+ L +VV TP +A++ K +++ + +LG++ENM
Sbjct: 205 PPGTGDTQLTLLQTLPLTGSVVVTTPEDVAVDDARKGLRMFGRHDTTVLGVVENM 259
>pir||S11948 mrp protein - Escherichia coli >gi|42017|emb|CAA39316.1| (X55791)
put. ATPase [Escherichia coli]
Length = 369
Score = 123 bits (306), Expect = 2e-27
Identities = 86/242 (35%), Positives = 127/242 (51%), Gaps = 18/242 (7%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEE 75
V+N+I VSSGKGGVGKS + LAL LA G KVG+LD D +G S +LG E +
Sbjct: 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSP 165
Query: 76 DRGVVPPIV-HGVKFMTIAYY-TENRPTPLRGKEISDALIELLTITRWDELDYLIIDMPP 133
D + PI+ HG+ +I Y T++ RG S AL+++L T W +LDYL++DMPP
Sbjct: 166 DGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPP 225
Query: 134 GLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL----- 188
G GD L + + + +VV TP +AL +K I + + +LGI+ENM +
Sbjct: 226 GTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSVHICSN 285
Query: 189 -DEEEDV------KRIAEKYGVKYLTGIKFYPGLESKIG----NVDELLRSEFAEKIREV 237
E + +++AEKY + L + + L + V SEF R++
Sbjct: 286 CGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFTAIYRQL 345
Query: 238 AN 239
A+
Sbjct: 346 AD 347
>sp|P21590|MRP_ECOLI MRP PROTEIN >gi|7446818|pir||H64978 probable ATPase mrp -
Escherichia coli >gi|405896|gb|AAA60527.1| (U00007) mrp
[Escherichia coli] >gi|1788431|gb|AAC75174.1| (AE000300)
putative ATPase [Escherichia coli K12]
>gi|744212|prf||2014253F ATPase [Escherichia coli]
Length = 379
Score = 123 bits (306), Expect = 2e-27
Identities = 86/242 (35%), Positives = 127/242 (51%), Gaps = 18/242 (7%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEE 75
V+N+I VSSGKGGVGKS + LAL LA G KVG+LD D +G S +LG E +
Sbjct: 116 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSP 175
Query: 76 DRGVVPPIV-HGVKFMTIAYY-TENRPTPLRGKEISDALIELLTITRWDELDYLIIDMPP 133
D + PI+ HG+ +I Y T++ RG S AL+++L T W +LDYL++DMPP
Sbjct: 176 DGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPP 235
Query: 134 GLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL----- 188
G GD L + + + +VV TP +AL +K I + + +LGI+ENM +
Sbjct: 236 GTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSVHICSN 295
Query: 189 -DEEEDV------KRIAEKYGVKYLTGIKFYPGLESKIG----NVDELLRSEFAEKIREV 237
E + +++AEKY + L + + L + V SEF R++
Sbjct: 296 CGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFTAIYRQL 355
Query: 238 AN 239
A+
Sbjct: 356 AD 357
>sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199 probable mrp protein
[imported] - Mycobacterium leprae
>gi|699143|gb|AAA62909.1| (U15180) MRP protein
[Mycobacterium leprae]
Length = 435
Score = 123 bits (305), Expect = 2e-27
Identities = 67/177 (37%), Positives = 100/177 (55%), Gaps = 2/177 (1%)
Query: 11 ARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPK 70
A+ + V V+SGKGGVGKS ++ LA +A RG VG+LD D HG S ++G +
Sbjct: 165 AQPNSLTRVYTVASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQR 224
Query: 71 EFPEEDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLII 129
E ++PPIVH VK ++I +TE N P RG + AL + L+ W +LD L++
Sbjct: 225 PIQLESM-ILPPIVHEVKVISIGQFTEGNTPVIWRGPMLHRALQQFLSDVYWGDLDVLML 283
Query: 130 DMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
D+PPG GD + V + + + +VV TP A V E+ + + I+G++ENM
Sbjct: 284 DLPPGTGDIAISVAQLIPNAEILVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENM 340
>pir||E82249 mrp protein VC1037 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9655501|gb|AAF94196.1| (AE004185) mrp
protein [Vibrio cholerae]
Length = 382
Score = 122 bits (304), Expect = 3e-27
Identities = 70/180 (38%), Positives = 105/180 (57%), Gaps = 2/180 (1%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILG-F 67
+SA ++ V+N+I V+SGKGGVGKS + LAL +A+ G KVGLLD D +G S ++LG
Sbjct: 111 VSAAVKGVKNIIAVTSGKGGVGKSTTAVNLALAIAKSGGKVGLLDADIYGPSVPLMLGKT 170
Query: 68 EPKEFPEEDRGVVPPIVHGVKFMTIAYYTENRPTPL-RGKEISDALIELLTITRWDELDY 126
+ K +++ + P HG+ +I Y + + RG S AL +LL T W +LDY
Sbjct: 171 KAKPVVRDNKWMQPIEAHGIATHSIGYLVDEADAAIWRGPMASKALAQLLNETEWPDLDY 230
Query: 127 LIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
L+IDMPPG GD L + + + ++V TP LAL K + + ++G++ENM
Sbjct: 231 LVIDMPPGTGDIQLTLAQQIPVTGAVIVTTPQDLALADARKGAAMFAKVDVPVIGLVENM 290
>sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 probable mrp protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|3261828|emb|CAB10925.1| (Z98260) mrp [Mycobacterium
tuberculosis]
Length = 390
Score = 122 bits (303), Expect = 4e-27
Identities = 65/177 (36%), Positives = 100/177 (55%), Gaps = 2/177 (1%)
Query: 11 ARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPK 70
A+ + + V V+SGKGGVGKS ++ LA +A RG +G+LD D HG S ++G +
Sbjct: 120 AQPDSLTRVYAVASGKGGVGKSTVTVNLAAAMAVRGLSIGVLDADIHGHSIPRMMGTTDR 179
Query: 71 EFPEEDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLII 129
E ++PPI H VK ++IA +T+ N P RG + AL + L W +LD L++
Sbjct: 180 PTQVESM-ILPPIAHQVKVISIAQFTQGNTPVVWRGPMLHRALQQFLADVYWGDLDVLLL 238
Query: 130 DMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
D+PPG GD + V + + + +VV TP A V E+ + + I+G++ENM
Sbjct: 239 DLPPGTGDVAISVAQLIPNAELLVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENM 295
>pir||E72780 probable nucleotide-binding protein APE0230 - Aeropyrum pernix
(strain K1) >gi|5103622|dbj|BAA79143.1| (AP000058) 283aa
long hypothetical nucleotide-binding protein [Aeropyrum
pernix]
Length = 283
Score = 122 bits (303), Expect = 4e-27
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 2 IDPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASD 61
I +Q+ I + ++R I V S KGGVGKS ++ +LA LA G +VG+ D D G S
Sbjct: 4 IQEQQMKIVRNMRRIRYKIAVISTKGGVGKSFVTASLAAALAAEGRRVGVFDADISGPSV 63
Query: 62 HVILGFEP-KEFPEEDRGVVPP--IVHGVKFMTIAYYTENRPTPL--RGKEISDALIELL 116
H +LG + P + G V P + G+K +I PL RG + A+ ELL
Sbjct: 64 HKMLGLQTGMGMPSQLDGTVKPVEVPPGIKVASIGLLLPMDEVPLIWRGAIKTSAIRELL 123
Query: 117 TITRWDELDYLIIDMPPGLGDPFLDVLRFLGR-GKFIVVATPSKLALNVVEKLIQLLKDE 175
W ELDYL+ID+PPG GD L + + + F+VV PS++A +VV+K + K
Sbjct: 124 AYVDWGELDYLLIDLPPGTGDEVLTITQIIPNITGFLVVTIPSEIAKSVVKKAVSFAKRI 183
Query: 176 NREILGIIENMKLDEEED-----------VKRIAEKYGVKYLTGIKFYPGL 215
++GI+ENM D + IA +YG++ L I P +
Sbjct: 184 EAPVIGIVENMSYFRCSDGSIHYIFGRGAAEEIASQYGIELLGKIPIDPAI 234
>pir||F81036 Mrp/NBP35 family protein NMB1846 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227102|gb|AAF42181.1| (AE002534) Mrp/NBP35 family
protein [Neisseria meningitidis MC58]
Length = 359
Score = 120 bits (298), Expect = 2e-26
Identities = 63/178 (35%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
++ V+N+I V+SGKGGVGKS + LA +A G +VG+LD D +G S +LG + ++
Sbjct: 92 IKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKP 151
Query: 73 PEEDRGVVP-PIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLIID 130
++++ ++P G++ M+I + + ++ RG +S AL +L+ + WDE+DYL ID
Sbjct: 152 DQKNQKLIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFID 211
Query: 131 MPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL 188
+PPG GD L + + + ++V TP +AL K + + + N ILG++ENM +
Sbjct: 212 LPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSV 269
>pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379346|emb|CAB83901.1|
(AL162753) hypothetical protein NMA0611 [Neisseria
meningitidis Z2491]
Length = 375
Score = 120 bits (298), Expect = 2e-26
Identities = 63/178 (35%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
++ V+N+I V+SGKGGVGKS + LA +A G +VG+LD D +G S +LG + ++
Sbjct: 108 IKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKP 167
Query: 73 PEEDRGVVP-PIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLIID 130
++++ ++P G++ M+I + + ++ RG +S AL +L+ + WDE+DYL ID
Sbjct: 168 DQKNQKLIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFID 227
Query: 131 MPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL 188
+PPG GD L + + + ++V TP +AL K + + + N ILG++ENM +
Sbjct: 228 LPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSV 285
>sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir||D64335
nucleotide-binding protein - Methanococcus jannaschii
>gi|1591007|gb|AAB98271.1| (U67483) nucleotide-binding
protein [Methanococcus jannaschii]
Length = 290
Score = 118 bits (294), Expect = 5e-26
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 4/182 (2%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFE 68
I + K+++ I + SGKGGVGKS ++ LA L G KVG+LD D HG + +LG E
Sbjct: 31 IRENMSKIKHKIVILSGKGGVGKSTVTVNLAAALNLMGKKVGVLDADIHGPNIPKMLGVE 90
Query: 69 PKEFPEEDRGVVPPIV-HGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDELD 125
+ G+ P + G+K M+I Y + TP+ RG ++S A+ + L+ W ELD
Sbjct: 91 NTQPMAGPAGIFPIVTKDGIKTMSIGYLLPDDKTPVIWRGPKVSGAIRQFLSDVVWGELD 150
Query: 126 YLIIDMPPGLGDPFLDVLRFL-GRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
YL+ID PPG GD L +++ + I+V TP ++++ V+K I + K N I+GIIE
Sbjct: 151 YLLIDTPPGTGDEQLTIMQSIPDIDGAIIVTTPEEVSVLDVKKSIMMAKMLNIPIIGIIE 210
Query: 185 NM 186
NM
Sbjct: 211 NM 212
>pir||B82576 polysaccharide export protein XF2301 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107465|gb|AAF85100.1|AE004041_12 (AE004041)
polysaccharide export protein [Xylella fastidiosa]
Length = 303
Score = 118 bits (292), Expect = 8e-26
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 1/175 (0%)
Query: 15 KVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPE 74
+VRNVI V SGKGGVGKS I+ LA+ L G +VG+LD D +G S +LG +
Sbjct: 41 RVRNVIAVGSGKGGVGKSTIAVNLAVALQRTGARVGVLDADIYGPSVPAMLGLSGRPESP 100
Query: 75 EDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLIIDMPP 133
+++ + P G++ M+I + + P RG + AL +L T W +LDYL+ID+PP
Sbjct: 101 DNKLIEPLRAFGIEAMSIGLLIDVDTPMIWRGPMATSALTQLFNDTLWGDLDYLLIDLPP 160
Query: 134 GLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL 188
G GD L + + + ++V TP +A K +++ + N +LGI+ENM +
Sbjct: 161 GTGDIQLTLSQKIPVAGAVIVTTPQDIATLDARKALKMFEKVNVPVLGIVENMAM 215
>emb|CAC01353.1| (AL390975) putative ATP-binding protein [Streptomyces coelicolor
A3(2)]
Length = 377
Score = 117 bits (290), Expect = 1e-25
Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Query: 11 ARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPK 70
A+ + V V+SGKGGVGKS ++ LA +A G KVG++D D +G S +LG + +
Sbjct: 105 AKPGSLTRVYAVASGKGGVGKSSVTVNLAASMAADGLKVGVVDADIYGHSVPRMLGADGR 164
Query: 71 EFPEEDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLII 129
E+ ++PP HGVK ++I +T N P RG + AL + L W +LD L++
Sbjct: 165 PTQVENM-IMPPSAHGVKVISIGMFTPGNAPVVWRGPMLHRALQQFLADVYWGDLDVLLL 223
Query: 130 DMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
D+PPG GD + V + + + +VV TP + A V E+ + +++I+G++ENM
Sbjct: 224 DLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGAIAVQTHQKIVGVVENM 280
>sp|Q9ZE27|MRP_RICPR MRP PROTEIN HOMOLOG >gi|7467663|pir||G71721 hypothetical protein
RP121 - Rickettsia prowazekii
>gi|3860689|emb|CAA14590.1| (AJ235270) unknown
[Rickettsia prowazekii]
Length = 318
Score = 116 bits (287), Expect = 3e-25
Identities = 73/203 (35%), Positives = 111/203 (53%), Gaps = 3/203 (1%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
+E V+ +I V+SGKGGVGKS IS +A L+ ++VG++D D +G S I G
Sbjct: 93 VENVKKIILVASGKGGVGKSTISALIAQQLSLENYRVGIVDADIYGPSIPHIFGINGIPK 152
Query: 73 PEEDRGVVPPIVHGVKFMTIAYYTENRPTPL-RGKEISDALIELLTITRWDELDYLIIDM 131
E R +VP + ++ ++I ++ + + RG S + +LL+ TRW+ LDYLIIDM
Sbjct: 153 TVEGR-IVPILAQNIQIISIGFFVKAHSAIIYRGPMASKIIYQLLSNTRWNNLDYLIIDM 211
Query: 132 PPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM-KLDE 190
PPG GD L ++ IVV T K++ V + I L + ILGIIENM + E
Sbjct: 212 PPGTGDIHLSIIENYHLDGVIVVTTQQKISEIDVIRSIDLYRKLGLPILGIIENMIYMLE 271
Query: 191 EEDVKRIAEKYGVKYLTGIKFYP 213
+ +++KY + + I P
Sbjct: 272 SDHCGYLSKKYHIPLIAQIPIMP 294
>pir||D75131 mrp-family probable nucleotide-binding protein PAB1795 - Pyrococcus
abyssi (strain Orsay) >gi|5458276|emb|CAB49765.1|
(AJ248285) MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 295
Score = 114 bits (283), Expect = 9e-25
Identities = 77/228 (33%), Positives = 121/228 (52%), Gaps = 24/228 (10%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDH 62
DP I + +K + + V SGKGGVGKS ++ L LA+ G+ VG+LD D HG +
Sbjct: 16 DPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVA 75
Query: 63 VILGFEPKEFPEE--DRG---VVPPI------VHGVKFMTIAYYT-ENRPTPLRGKEISD 110
+LG E +E E D G ++PP+ V +K M++ E++P RG ++
Sbjct: 76 KMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTK 135
Query: 111 ALIELLTITRWDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQ 170
A+ +LL +W LD++IID PPG GD L V++ + I+V TP ++AL K +
Sbjct: 136 AIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVN 195
Query: 171 LLKDENREILGIIENM----------KLD--EEEDVKRIAEKYGVKYL 206
++K + ++ENM K+D E +++AEK GV +L
Sbjct: 196 MMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFL 243
>pir||E72233 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982164|gb|AAD36660.1|AE001804_4 (AE001804)
conserved hypothetical protein [Thermotoga maritima]
Length = 247
Score = 114 bits (282), Expect = 1e-24
Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 17/219 (7%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
+EK + I V SGKGGVGK+ ++ LA+ LA G++VGLLDLD HG + +LG
Sbjct: 1 MEKTKK-IAVMSGKGGVGKTTVAVNLAVALAAEGYQVGLLDLDLHGPNVQRMLGVSLP-- 57
Query: 73 PEEDRGVVPPIV-HGVKFMTIAYYT-ENRPTPLRGKEISDALIELLTITRWDELDYLIID 130
P E +VP +K ++A E P RG A+ +L W +LDYLI D
Sbjct: 58 PSEGEKIVPAKYGDSLKVFSLAMILQEGAPVIWRGPLKHKAIEQLTRDVEWGDLDYLICD 117
Query: 131 MPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMK--- 187
+PPG GD L + + IVV+TP K+A + V + I +K + +ILG++ENM
Sbjct: 118 LPPGTGDEALSTFQIIKPDAVIVVSTPQKVAGDDVRRAINFVKRLSGKILGLVENMSYLV 177
Query: 188 ---------LDEEEDVKRIAEKYGVKYLTGIKFYPGLES 217
+ + + +++AE++G+ + I P + S
Sbjct: 178 CPNCGEKIYVFGKGETEKLAEEFGIPLIARIPMDPEVVS 216
>emb|CAC12597.1| (AL445067) probable nucleotide-binding protein [Thermoplasma
acidophilum]
Length = 255
Score = 114 bits (282), Expect = 1e-24
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 4/175 (2%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEE 75
++ I V SGKGGVGKS ++ LA+ LA +G KVGL+D D +G D +LG + +
Sbjct: 1 MKYTITVMSGKGGVGKSTVAVNLAVSLARKGLKVGLIDADINGPDDPKLLGVSDLKLYAD 60
Query: 76 DRGVVPPIV-HGVKFMTIAYY--TENRPTPLRGKEISDALIELLTITRWDELDYLIIDMP 132
+ G++P +GV+ +++ + TE+ P RG + A+ + L W + D +++DMP
Sbjct: 61 EEGIIPAETRYGVRVVSMGFLIPTEDTPIIWRGSLMHKAIQQFLEDVNWKDTDVVVLDMP 120
Query: 133 PGLGDPFLDVLRFLGRGK-FIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
PG GD L V + + ++V TP +AL +K I K +LGIIENM
Sbjct: 121 PGTGDVALSVAQLIPESNGVVIVVTPQDVALLDAKKAINFAKQLKLPVLGIIENM 175
>dbj|BAB03959.1| (AP001507) ATP-binding Mrp protein (Mrp/Nbp35 family) [Bacillus
halodurans]
Length = 350
Score = 113 bits (280), Expect = 2e-24
Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 20 IPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFE--PKEFPEEDR 77
I V+SGKGGVGKS +S LA LA G KVG++D D +G S ++G E PK E+
Sbjct: 110 IAVTSGKGGVGKSTVSVNLATTLARLGKKVGIIDADIYGFSVPDMMGIEERPKVVGEQ-- 167
Query: 78 GVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLIIDMPPGLG 136
+ P GVK +++ ++ E N P RG + L W +LDYLI+D+PPG G
Sbjct: 168 -IFPVERFGVKVISMGFFVEDNAPVIWRGPMLGKMLNNFFAEVEWGDLDYLILDLPPGTG 226
Query: 137 DPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKLDEEE 192
D LD+ L K I+V TP A V + + + EI+G++ENM E +
Sbjct: 227 DVALDIHTMLPHSKEILVTTPHATAAFVAARAGAMALKTHHEIIGVVENMAYFESK 282
>pir||F75448 mrp protein - Deinococcus radiodurans (strain R1)
>gi|6458727|gb|AAF10574.1|AE001952_2 (AE001952) mrp
protein [Deinococcus radiodurans]
Length = 350
Score = 113 bits (279), Expect = 3e-24
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 2/181 (1%)
Query: 8 AISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGF 67
A L V++V+ V SGKGGVGKS ++ LA LA G +VGLLD D +G S +LG
Sbjct: 82 ATQPALPGVKHVVLVGSGKGGVGKSSVAVNLAASLARDGARVGLLDADVYGPSVAHMLGQ 141
Query: 68 -EPKEFPEEDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELD 125
+ + EDR + P HGV+F+++A + + RG + A+ + L + W ELD
Sbjct: 142 GQARVTANEDRKMRPIEAHGVRFISMANLSPAGQALVWRGPMLHSAIQQFLKDSAWGELD 201
Query: 126 YLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIEN 185
YLI+D+PPG GD L + + + ++V TP +AL + I + + + +LG++EN
Sbjct: 202 YLIVDLPPGTGDVQLSLTQTVQVTGAVIVTTPQDVALIDAARAIDMFRKASVPVLGVVEN 261
Query: 186 M 186
M
Sbjct: 262 M 262
>pir||T06147 hypothetical protein F24J7.100 - Arabidopsis thaliana
>gi|2853081|emb|CAA16931.1| (AL021768) ATP binding
protein-like [Arabidopsis thaliana]
>gi|7268750|emb|CAB78956.1| (AL161551) ATP binding
protein-like [Arabidopsis thaliana]
Length = 313
Score = 112 bits (278), Expect = 3e-24
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 14/209 (6%)
Query: 12 RLEKVRNVIPVSSGKGGVGKSLISTTLALVLAER-GFKVGLLDLDFHGASDHVILGFEPK 70
RL V+++I V+SGKGGVGKS + LA+ LA + K+GLLD D +G S +++ K
Sbjct: 38 RLHGVKDIIAVASGKGGVGKSSTAVNLAVALANKCELKIGLLDADVYGPSVPIMMNINQK 97
Query: 71 EFPEEDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLII 129
+D ++P +GVK M++ E + P RG + AL ++ W +LD L++
Sbjct: 98 PQVNQDMKMIPVENYGVKCMSMGLLVEKDAPLVWRGPMVMSALAKMTKGVDWGDLDILVV 157
Query: 130 DMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMK-- 187
DMPPG GD + + + L ++V+TP +AL + I + ILG++ENM
Sbjct: 158 DMPPGTGDAQISISQNLKLSGAVIVSTPQDVALADANRGISMFDKVRVPILGLVENMSCF 217
Query: 188 ----------LDEEEDVKRIAEKYGVKYL 206
+ +E +R A K G+K +
Sbjct: 218 VCPHCNEPSFIFGKEGARRTAAKKGLKLI 246
>sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir||H71085 probable MRP
protein - Pyrococcus horikoshii
>gi|3257363|dbj|BAA30046.1| (AP000004) 295aa long
hypothetical MRP protein [Pyrococcus horikoshii]
Length = 295
Score = 112 bits (278), Expect = 3e-24
Identities = 76/228 (33%), Positives = 121/228 (52%), Gaps = 24/228 (10%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDH 62
DP + I + +K + I V SGKGGVGKS ++ L LA+ G+ VG+LD D HG +
Sbjct: 16 DPLEQRIKEKEKKWKYKIAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVA 75
Query: 63 VILGFEPKEFPEE--DRG---VVPPI------VHGVKFMTIAYYT-ENRPTPLRGKEISD 110
+LG + +E E D G ++PP V +K M++ E++P RG ++
Sbjct: 76 KMLGVDKEEVYAEKFDDGHFEMIPPTTDFMGQVTPIKVMSMGMMVPEDQPVIWRGPLVTK 135
Query: 111 ALIELLTITRWDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQ 170
A+ +LL +W LD++IID PPG GD L V++ + I+V TP ++AL K +
Sbjct: 136 AIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIKLDAAIIVTTPQEVALLDTGKAVN 195
Query: 171 LLKDENREILGIIENM----------KLD--EEEDVKRIAEKYGVKYL 206
++K + ++ENM K+D E +++A+K GV +L
Sbjct: 196 MMKKMEVPYVAVVENMSYLICPHCGNKIDIFGEGGGEKLAQKEGVDFL 243
>sp|P50863|MRP_BACSU MRP PROTEIN HOMOLOG >gi|7446824|pir||A69743 ATP-binding Mrp-like
protein homolog ybaL - Bacillus subtilis
>gi|1177249|emb|CAA52756.1| (X74737) rec233 [Bacillus
subtilis] >gi|1644213|dbj|BAA10994.1| (D64126) unknown
[Bacillus subtilis] >gi|2632421|emb|CAB11930.1| (Z99104)
alternate gene name: ybxI~similar to ATP-binding
Mrp-like protein [Bacillus subtilis]
Length = 352
Score = 111 bits (275), Expect = 8e-24
Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 20 IPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEEDRGV 79
+ V+SGKGGVGKS +S LA+ LA G KVGL+D D +G S ++G + E ++ +
Sbjct: 109 LAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRPTIEGEK-L 167
Query: 80 VPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLIIDMPPGLGDP 138
+P GVK M++ ++ E N P RG + L W E+DY+++D+PPG GD
Sbjct: 168 LPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIVLDLPPGTGDV 227
Query: 139 FLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
LDV L K I+V+TP A V + + + E++G+IENM
Sbjct: 228 ALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENM 275
>sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 probable ATPase -
Synechocystis sp. (strain PCC 6803)
>gi|1001155|dbj|BAA10297.1| (D64001) put. ATPase
[Synechocystis sp.]
Length = 353
Score = 111 bits (275), Expect = 8e-24
Identities = 63/190 (33%), Positives = 108/190 (56%), Gaps = 7/190 (3%)
Query: 4 PRQIAISAR--LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASD 61
P+Q ++ R + +V+N+I +SSGKGGVGKS ++ +A+ LA+ G VGLLD D +G +
Sbjct: 82 PQQKSLPDRQSVGQVKNIIAISSGKGGVGKSTVAVNVAVALAQTGAAVGLLDADIYGPNA 141
Query: 62 HVILGFEPK--EFPEEDRGVV--PPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELL 116
+LG + +G V P HG+K +++ + + ++P RG ++ + + L
Sbjct: 142 PTMLGLSGAAVQVQNSPQGEVLEPVFNHGIKMVSMGFLIDPDQPVIWRGPMLNGIIRQFL 201
Query: 117 TITRWDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDEN 176
W LDYLI+DMPPG GD L + + + ++V TP ++L + +++ +
Sbjct: 202 YQVNWGALDYLIVDMPPGTGDAQLTLTQSVPMAGAVIVTTPQTVSLLDARRGLKMFQQMG 261
Query: 177 REILGIIENM 186
+LGI+ENM
Sbjct: 262 VNVLGIVENM 271
>pir||G69023 nucleotide-binding protein, probable ATPase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622283|gb|AAB85665.1| (AE000886) nucleotide-binding
protein (putative ATPase) [Methanobacterium
thermoautotrophicum]
Length = 276
Score = 110 bits (272), Expect = 2e-23
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 16/227 (7%)
Query: 5 RQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVI 64
+ + I L K+++ I V SGKGGVGKS ++ LA + G+ V +LD D HG +
Sbjct: 17 QDVKIVRALSKIKHKIVVMSGKGGVGKSTVTVKLAEEFSRNGYSVCVLDADVHGPDIPKM 76
Query: 65 LGFEPKEFPEEDRGVVP-PIVHGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRW 121
+ E + P P G M+I ++ + TP+ RG + + A+ +LL W
Sbjct: 77 MRVREPEITLTGNLINPIPTPVGATVMSIEFFLPSEDTPVIWRGPKKTGAIRQLLADVNW 136
Query: 122 DELDYLIIDMPPGLGDPFLDVLRFL-GRGKFIVVATPSKLALNVVEKLIQLLKDENREIL 180
+ +D LI+D PPG GD L VL+ + G ++V TP +++++ VEK I ++ +L
Sbjct: 137 EGIDVLIVDNPPGTGDEPLTVLQSIPGIDGVVIVTTPQEVSIHDVEKCINMVNHLKIPVL 196
Query: 181 GIIENMK------------LDEEEDVKRIAEKYGVKYLTGIKFYPGL 215
GIIENM L ++ K +A+K+ +++L I F G+
Sbjct: 197 GIIENMSYLQCPECGKKVFLFGKDGGKYLADKFDLQFLGEIPFETGI 243
>dbj|BAB08742.1| (AB017063) nucleotide-binding protein [Arabidopsis thaliana]
Length = 317
Score = 109 bits (270), Expect = 3e-23
Identities = 66/190 (34%), Positives = 102/190 (52%), Gaps = 6/190 (3%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDH 62
DP +AI+ R+ V++ I V SGKGGVGKS S L+ LA +VGL+D+D G S
Sbjct: 45 DPDLVAIAERMSTVKHKILVLSGKGGVGKSTFSAQLSFALAGMDHQVGLMDIDICGPSIP 104
Query: 63 VILGFEPKEFPEEDRGVVPPIVH-GVKFMTIAYYTENRPTPL--RGKEISDALIELLTIT 119
+LG E +E + + G P V + M+I + N + RG + + + L
Sbjct: 105 KMLGLEGQEIHQSNLGWSPVYVEDNLGVMSIGFMLPNSDEAVIWRGPRKNGLIKQFLKDV 164
Query: 120 RWDELDYLIIDMPPGLGDPFLDVLRFL---GRGKFIVVATPSKLALNVVEKLIQLLKDEN 176
W E+DYL++D PPG D + ++++L G I+V TP +++L V K + K
Sbjct: 165 YWGEIDYLVVDAPPGTSDEHISIVQYLLPTGIDGAIIVTTPQEVSLIDVRKEVSFCKKVG 224
Query: 177 REILGIIENM 186
+LG++ENM
Sbjct: 225 VPVLGVVENM 234
>gi|6322188 Yil003wp [Saccharomyces cerevisiae] >gi|731773|sp|P40558|YIA3_YEAST
HYPOTHETICAL 31.9 KD PROTEIN IN BET1-PAN1 INTERGENIC
REGION >gi|1362387|pir||S58704 probable membrane protein
YIL003w - yeast (Saccharomyces cerevisiae)
Length = 293
Score = 109 bits (269), Expect = 4e-23
Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 22/234 (9%)
Query: 10 SARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEP 69
+A L ++++I + SGKGGVGKS ++T AL L GFKVG+LD+D G S + G E
Sbjct: 10 AASLAGIKHIILILSGKGGVGKSSVTTQTALTLCSMGFKVGVLDIDLTGPSLPRMFGLEN 69
Query: 70 KEFPEEDRGVVPPIVH-----GVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWD 122
+ + G P V + +++ + +R + RG + + + + ++ W
Sbjct: 70 ESIYQGPEGWQPVKVETNSTGSLSVISLGFLLGDRGNSVIWRGPKKTSMIKQFISDVAWG 129
Query: 123 ELDYLIIDMPPGLGDPFLDV---LRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREI 179
ELDYL+ID PPG D + + LR+ IVV TP +A V+K I K + +I
Sbjct: 130 ELDYLLIDTPPGTSDEHISIAEELRYSKPDGGIVVTTPQSVATADVKKEINFCKKVDLKI 189
Query: 180 LGIIENM------------KLDEEEDVKRIAEKYGVKYLTGIKFYPGLESKIGN 221
LGIIENM + KR++E++ V YL + P I N
Sbjct: 190 LGIIENMSGFVCPHCAECTNIFSSGGGKRLSEQFSVPYLGNVPIDPKFVEMIEN 243
>pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (strain J99)
>gi|4154712|gb|AAD05776.1| (AE001457) putative
[Helicobacter pylori J99]
Length = 368
Score = 107 bits (264), Expect = 2e-22
Identities = 64/199 (32%), Positives = 110/199 (55%), Gaps = 3/199 (1%)
Query: 14 EKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFP 73
+ +++V+ +SSGKGGVGKS S L++ LA KVGLLD D +G + ++G + +
Sbjct: 94 KNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVI 153
Query: 74 EEDRG--VVPPIVHGVKFMTIAY-YTENRPTPLRGKEISDALIELLTITRWDELDYLIID 130
+ G ++P GV M++ Y E + RG + A+ ++L+ W +LD L++D
Sbjct: 154 MDPSGKKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVVD 213
Query: 131 MPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKLDE 190
MPPG GD L + + + I V TP ++L+ ++ + + K + I GI+ENM
Sbjct: 214 MPPGTGDAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGIVENMGSFV 273
Query: 191 EEDVKRIAEKYGVKYLTGI 209
E K+ +E +G ++G+
Sbjct: 274 CEHCKKESEIFGSNSMSGL 292
>sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ATP-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313292|gb|AAD07271.1| (AE000540) ATP-binding
protein (mpr) [Helicobacter pylori 26695]
Length = 412
Score = 104 bits (258), Expect = 8e-22
Identities = 63/192 (32%), Positives = 106/192 (54%), Gaps = 3/192 (1%)
Query: 14 EKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFP 73
+ +++V+ +SSGKGGVGKS S L++ LA KVGLLD D +G + ++G + +
Sbjct: 138 KNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQSADVI 197
Query: 74 EEDRG--VVPPIVHGVKFMTIAY-YTENRPTPLRGKEISDALIELLTITRWDELDYLIID 130
+ G ++P GV M++ Y E + RG + A+ ++L+ W +LD L++D
Sbjct: 198 MDPSGKKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVVD 257
Query: 131 MPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKLDE 190
MPPG GD L + + + I V TP ++L+ ++ + + K + I GI+ENM
Sbjct: 258 MPPGTGDAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGIVENMGSFV 317
Query: 191 EEDVKRIAEKYG 202
E K+ +E +G
Sbjct: 318 CEHCKKESEIFG 329
>dbj|BAB14203.1| (AK022722) unnamed protein product [Homo sapiens]
Length = 289
Score = 104 bits (256), Expect = 1e-21
Identities = 60/179 (33%), Positives = 101/179 (55%), Gaps = 3/179 (1%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLA--ERGFKVGLLDLDFHGASDHVILGFEPK 70
+E V+ VI V+SGKGGVGKS + LAL LA + +GLLD+D +G S ++ +
Sbjct: 33 IEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMNLKGN 92
Query: 71 EFPEEDRGVVPPIVHGVKFMTIAYYTE-NRPTPLRGKEISDALIELLTITRWDELDYLII 129
+ + P + +G+ M++ + E + P RG + A+ +LL W +LDYL++
Sbjct: 93 PELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLDYLVV 152
Query: 130 DMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMKL 188
DMPPG GD L V + + ++V+TP +AL K ++ + + +LG+++NM +
Sbjct: 153 DMPPGTGDVQLSVSQNIPITGAVIVSTPQDIALMDAHKGAEMFRRVHVPVLGLVQNMSV 211
>gi|6754908 nucleotide binding protein 2 [Mus musculus]
>gi|6018191|gb|AAF01785.1|AF114169_1 (AF114169)
nucleotide-binding protein short form [Mus musculus]
Length = 275
Score = 103 bits (255), Expect = 2e-21
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
L VR++I V SGKGGVGKS IST LAL L +G KVG+LD+D G S +L + K
Sbjct: 14 LAGVRHIILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGPSIPHMLRAQGKAV 73
Query: 73 PEEDRGVVPPIV---HGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDELDYL 127
+ D G VP V + M++ + EN + RG + + + ++ W +LDYL
Sbjct: 74 HQCDNGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQFVSDVAWGQLDYL 133
Query: 128 IIDMPPGLGDPFLDVLRFLGRGK---FIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
++D PPG D + + L + +VV TP +++ V + + K +++G+IE
Sbjct: 134 VVDTPPGTSDEHMATMEALRPYRPLGALVVTTPQAVSIGDVRRELTFCKKTGLQVIGVIE 193
Query: 185 NM 186
NM
Sbjct: 194 NM 195
>emb|CAB71141.1| (AJ271724) hypothetical protein OrfA [Eubacterium acidaminophilum]
Length = 274
Score = 103 bits (255), Expect = 2e-21
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 17/204 (8%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEE 75
++ VI + SGKGGVGKS +++ LA+ L ++GFKVG+LD D G S I G ++
Sbjct: 14 IKKVIAIMSGKGGVGKSSVTSLLAVSLIKKGFKVGILDGDMGGTSIPKIFGITGEKSNTS 73
Query: 76 DRGVVPPIV-HGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDELDYLIIDMP 132
+G+ P G+K M++++ E +P+ RG IS L + T W +LDYL+ID P
Sbjct: 74 SKGIEPVTTPSGIKVMSLSFLMEKEDSPVIWRGLLISKTLRQFYTDFLWGDLDYLLIDFP 133
Query: 133 PGLGDPFLDVLRFLGRGKFIVVATPSKL--------------ALNVVEKLIQLLKDENRE 178
PG D L ++ L G P++ + +V+K + K +
Sbjct: 134 PGTSDLPLTMIHSLPGGWHNNCFVPARSCKPGYRARIRNHGHSCMIVKKSADMAKRMDVP 193
Query: 179 ILGIIENMKLDEEEDVKRIAEKYG 202
ILGIIENM E D K+ +G
Sbjct: 194 ILGIIENMSYYECPDCKKRINIFG 217
>pir||T39000 probable nucleotide binding protein - fission yeast
(Schizosaccharomyces pombe) >gi|4056552|emb|CAA22587.1|
(AL034583) putative nucleotide binding protein
[Schizosaccharomyces pombe]
Length = 317
Score = 102 bits (252), Expect = 4e-21
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 7/191 (3%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLA-ERGFKVGLLDLDFHGASD 61
DP + RL+++++ I V SGKGGVGKS S+ LA L+ E ++GL+D+D G S
Sbjct: 46 DPDLPLVVERLKEIKHKILVLSGKGGVGKSTFSSQLAWGLSLEEDKQIGLMDVDICGPSI 105
Query: 62 HVILGFEPKEFPEEDRGVVPPIV-HGVKFMTIAYY--TENRPTPLRGKEISDALIELLTI 118
I+G E +E + +G P V + M+I + +E+ RG + + + + +
Sbjct: 106 PRIMGVEKEEAHQSSKGWSPIYVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKD 165
Query: 119 TRWDELDYLIIDMPPGLGDPFLDVLRFL---GRGKFIVVATPSKLALNVVEKLIQLLKDE 175
W+ LDYLI+D PPG D L +++F G +VV TP ++AL V K I +
Sbjct: 166 VNWENLDYLIVDTPPGTSDEHLSLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKA 225
Query: 176 NREILGIIENM 186
+ ILG++ENM
Sbjct: 226 SIPILGLVENM 236
>pir||D81256 probable ATP/GTP-binding protein (mrp protein homolog) Cj1606c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969023|emb|CAB73594.1| (AL139079) putative
ATP/GTP-binding protein (mrp protein homolog)
[Campylobacter jejuni]
Length = 368
Score = 102 bits (251), Expect = 5e-21
Identities = 64/174 (36%), Positives = 98/174 (55%), Gaps = 3/174 (1%)
Query: 15 KVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPE 74
+V+N I VSSGKGGVGKS + LA+ +A+ G +VG+LD D +G + +LG E K PE
Sbjct: 95 QVKNFIMVSSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLG-ETKTQPE 153
Query: 75 E-DRGVVPPIVHGVKFMTIAYYTENRPTPL-RGKEISDALIELLTITRWDELDYLIIDMP 132
+ + P + HGV M++ E + RG I A+ +LL W ELD L +DMP
Sbjct: 154 VVGQRLKPILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMP 213
Query: 133 PGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENM 186
PG GD + + + + V+TP ++L+ ++ + + + I G+IENM
Sbjct: 214 PGTGDAQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENM 267
>gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo sapiens]
>gi|11432473|ref|XP_008093.1| nucleotide binding protein
2 (E.coli MinD like) [Homo sapiens]
>gi|5565870|gb|AAD45242.1|AF118394_1 (AF118394) putative
nucleotide binding protein [Homo sapiens]
Length = 271
Score = 101 bits (248), Expect = 1e-20
Identities = 63/182 (34%), Positives = 97/182 (52%), Gaps = 8/182 (4%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
L VR++I V SGKGGVGKS IST LAL L G KVG+LD+D G S +LG + +
Sbjct: 10 LAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAV 69
Query: 73 PEEDRGVVPPIV---HGVKFMTIAYYTE--NRPTPLRGKEISDALIELLTITRWDELDYL 127
+ DRG P + + M++ + E + RG + + + + ++ W ELDYL
Sbjct: 70 HQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYL 129
Query: 128 IIDMPPGLGDPF---LDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
++D PPG D ++ LR +VV TP +++ V + + + ++GI+E
Sbjct: 130 VVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVE 189
Query: 185 NM 186
NM
Sbjct: 190 NM 191
>dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens]
Length = 271
Score = 101 bits (248), Expect = 1e-20
Identities = 63/182 (34%), Positives = 97/182 (52%), Gaps = 8/182 (4%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEF 72
L VR++I V SGKGGVGKS IST LAL L G KVG+LD+D G S +LG + +
Sbjct: 10 LAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAV 69
Query: 73 PEEDRGVVPPIV---HGVKFMTIAYYTE--NRPTPLRGKEISDALIELLTITRWDELDYL 127
+ DRG P + + M++ + E + RG + + + + ++ W ELDYL
Sbjct: 70 HQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYL 129
Query: 128 IIDMPPGLGDPF---LDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIE 184
++D PPG D ++ LR +VV TP +++ V + + + ++GI+E
Sbjct: 130 VVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVE 189
Query: 185 NM 186
NM
Sbjct: 190 NM 191
>emb|CAC04440.1| (AL391572) related to nucleotide-binding protein [Neurospora
crassa]
Length = 331
Score = 101 bits (248), Expect = 1e-20
Identities = 73/249 (29%), Positives = 118/249 (47%), Gaps = 20/249 (8%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGF- 67
+ +++ V VI VSS KGGVGKS I+ LAL L+ G+ G+LD D G S +
Sbjct: 60 LKRKIKNVDKVIAVSSAKGGVGKSTIAANLALSLSRLGYTTGILDTDLFGPSIPTLFNLS 119
Query: 68 EPKEFP--EEDRGVVPPIVHGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWD- 122
P P ++P +GVK M+I Y + + L RG + A+ +LL W
Sbjct: 120 SPSLSPSLNPHNQLLPLTSYGVKTMSIGYLLGSEDSALVWRGPMLLKAIQQLLHEVDWSH 179
Query: 123 -ELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILG 181
LD L++D+PPG GD L + + + ++V TP LA+ K + + + + ILG
Sbjct: 180 PSLDVLVLDLPPGTGDTQLSIAQQVVVDGAVIVTTPHTLAIKDAVKGVNMFRKVDIPILG 239
Query: 182 IIENMKL-------------DEEEDVKRIAEKYGVKYLTGIKFYPGLESKIGNVDELLRS 228
+++NM + E V ++ E+ +++L + +P + G + S
Sbjct: 240 VVQNMSVFCCPGCGKETHVFGGTEGVTKVCEEMDMEFLGDVPLHPSIGEDGGRGKPTVVS 299
Query: 229 EFAEKIREV 237
E K EV
Sbjct: 300 EPGGKEAEV 308
>gb|AAF57258.1| (AE003783) CG3262 gene product [Drosophila melanogaster]
Length = 293
Score = 99.1 bits (243), Expect = 4e-20
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 1/173 (0%)
Query: 16 VRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKEFPEE 75
V+++I V+SGKGGVGKS ++ A LA+ G +VGLLD D G + +++ + +
Sbjct: 38 VQDIIVVASGKGGVGKSTVAVNFACSLAKLGKRVGLLDGDIFGPTIPLLMNVHGEPVVND 97
Query: 76 DRGVVPPIVHGVKFMTIAYYTENRPTPL-RGKEISDALIELLTITRWDELDYLIIDMPPG 134
++PP + VK +++ T + + RG + A+ LL T W LD L+ID PPG
Sbjct: 98 KNLMIPPQNYNVKCLSMGMLTPVETSVIWRGPLVMSAIQRLLKGTDWGLLDVLVIDTPPG 157
Query: 135 LGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQLLKDENREILGIIENMK 187
GD L + + I+V TP A+ V K + + N I G++ENMK
Sbjct: 158 TGDVHLSLSQHAPITGVILVTTPHTAAVQVTLKGASMYEKLNVPIFGVVENMK 210
>gi|4505337 nucleotide binding protein 1 (E.coli MinD like); nucleotide binding
protein (e.coli MinD like) [Homo sapiens]
>gi|1709232|sp|P53384|NBP_HUMAN NUCLEOTIDE-BINDING
PROTEIN (NBP) >gi|1082661|pir||JC4010 nucleotide-binding
protein - human >gi|515644|gb|AAA61932.1| (U01833)
putative nucleotide-binding protein [Homo sapiens]
Length = 320
Score = 97.5 bits (239), Expect = 1e-19
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 7/185 (3%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAE-RGFKVGLLDLDFHGASDHVILGF 67
I +++ V++ I V SGKGGVGKS S LA LAE ++ LLD+D G S I+G
Sbjct: 46 IKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGL 105
Query: 68 EPKEFPEEDRGVVPPIVH---GVKFMTIAYYTENRPTPLRGKEISDALIELLTITRWDEL 124
E ++ + G P V GV + + + RG + + + + L W E+
Sbjct: 106 EGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEV 165
Query: 125 DYLIIDMPPGLGDPFLDVLRFLGRGKF---IVVATPSKLALNVVEKLIQLLKDENREILG 181
DYLI+D PPG D L V+R+L +++ TP +L+L V K I + I+G
Sbjct: 166 DYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQELSLQDVRKEINFCRKVKLPIIG 225
Query: 182 IIENM 186
++ENM
Sbjct: 226 VVENM 230
>gi|6754906 nucleotide binding protein 1 [Mus musculus]
>gi|6018193|gb|AAF01786.1|AF114170_1 (AF114170)
nucleotide-binding protein long form [Mus musculus]
Length = 320
Score = 96.7 bits (237), Expect = 2e-19
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 7/191 (3%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERG-FKVGLLDLDFHGASD 61
DP I +++ VR+ + V SGKGGVGKS S LA LAE G +V LLD+D G S
Sbjct: 40 DPAVEEIREKMKTVRHKLLVLSGKGGVGKSTFSAHLAHGLAEDGDTQVALLDIDICGPSI 99
Query: 62 HVILGFEPKEFPEEDRGVVPPIVH---GVKFMTIAYYTENRPTPLRGKEISDALIELLTI 118
I+G E ++ + G P V GV + + + RG + + + + L
Sbjct: 100 PKIMGLEGEQVHQSGSGWSPVYVDDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRD 159
Query: 119 TRWDELDYLIIDMPPGLGDPFLDVLRFLGRGKF---IVVATPSKLALNVVEKLIQLLKDE 175
W ++DYLI+D PPG D L V+++L +++ TP ++AL V K I
Sbjct: 160 VDWGDVDYLIVDTPPGTSDEHLSVVQYLAAAHIDGAVILTTPQEVALQDVRKEISFCHKV 219
Query: 176 NREILGIIENM 186
I+G++ENM
Sbjct: 220 KLPIIGVVENM 230
>gi|11431846 nucleotide binding protein 1 (E.coli MinD like) [Homo sapiens]
Length = 320
Score = 96.3 bits (236), Expect = 3e-19
Identities = 62/185 (33%), Positives = 95/185 (50%), Gaps = 7/185 (3%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAE-RGFKVGLLDLDFHGASDHVILGF 67
I +++ V++ I V SGKGGVGKS S LA LAE ++ LLD+D G S I+G
Sbjct: 46 IKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGL 105
Query: 68 EPKEFPEEDRGVVPPIVH---GVKFMTIAYYTENRPTPLRGKEISDALIELLTITRWDEL 124
E ++ + G P V GV + + + RG + + + + L W E+
Sbjct: 106 EGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEV 165
Query: 125 DYLIIDMPPGLGDPFLDVLRFLGRGKF---IVVATPSKLALNVVEKLIQLLKDENREILG 181
DYLI+D PPG D L V+R+L +++ TP +++L V K I + I+G
Sbjct: 166 DYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIG 225
Query: 182 IIENM 186
++ENM
Sbjct: 226 VVENM 230
>gi|6321347 35 kDa nucleotide binding protein; Nbp35p [Saccharomyces
cerevisiae] >gi|1709228|sp|P52920|NB35_YEAST NBP35
PROTEIN >gi|2132358|pir||S64098 nucleotide-binding
protein NBP35 - yeast (Saccharomyces cerevisiae)
>gi|1322621|emb|CAA96797.1| (Z72613) ORF YGL091c
[Saccharomyces cerevisiae]
Length = 328
Score = 92.4 bits (226), Expect = 4e-18
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 7/191 (3%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVL-AERGFKVGLLDLDFHGASD 61
DP I+ L + + I V SGKGGVGKS + L+ L A+ +VG +DLD G S
Sbjct: 58 DPDIPLITDNLSGIEHKILVLSGKGGVGKSTFAAMLSWALSADEDLQVGAMDLDICGPSL 117
Query: 62 HVILGFEPKEFPEEDRGVVPPIV-HGVKFMTIAYYTENRPTPL--RGKEISDALIELLTI 118
+LG + E + G P V + M+I Y + + RG + + + + L
Sbjct: 118 PHMLGCIKETVHESNSGWTPVYVTDNLATMSIQYMLPEDDSAIIWRGSKKNLLIKKFLKD 177
Query: 119 TRWDELDYLIIDMPPGLGDPFLDVLRFL---GRGKFIVVATPSKLALNVVEKLIQLLKDE 175
WD+LDYL+ID PPG D + + +++ G +VV TP ++AL V K I K
Sbjct: 178 VDWDKLDYLVIDTPPGTSDEHISINKYMRESGIDGALVVTTPQEVALLDVRKEIDFCKKA 237
Query: 176 NREILGIIENM 186
ILG++ENM
Sbjct: 238 GINILGLVENM 248
>pir||T39094 WD domain, G-beta repeat protein - fission yeast
(Schizosaccharomyces pombe) >gi|5834803|emb|CAB55281.1|
(AL117212) WD domian, G-beta repeat protein
[Schizosaccharomyces pombe]
Length = 608
Score = 91.7 bits (224), Expect = 7e-18
Identities = 67/196 (34%), Positives = 100/196 (50%), Gaps = 22/196 (11%)
Query: 13 LEKVRNVIPVSSGKGGVGKSLISTTLALVLAE-----RGFKVGLLDLDFHGASDHVILG- 66
++KV++VI V SGKGGVGKS ++T LAL L + R K G+LD+D G S + G
Sbjct: 1 MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60
Query: 67 -FEPKEFPEEDRGVVPPIVHGVK---FMTIAYY--TENRPTPLRGKEISDALIELLTITR 120
E + G VP K M++ + ++N RG + + + + ++
Sbjct: 61 DAERNRIHQSSAGWVPVYTDETKEIGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFISDVS 120
Query: 121 WDELDYLIIDMPPGLGDPFLDV----------LRFLGRGKFIVVATPSKLALNVVEKLIQ 170
W ELD+LIID PPG GD L + +R + ++V TP +A V+K I
Sbjct: 121 WGELDFLIIDTPPGTGDEHLTIVESLLSETSTVRDVPIDGAVIVTTPQGIATLDVQKEID 180
Query: 171 LLKDENREILGIIENM 186
K + +ILGI+ENM
Sbjct: 181 FCKKASIKILGIVENM 196
>emb|CAC14524.1| (AL446004) MRP-family nucleotide-binding protein [Leishmania major]
Length = 327
Score = 91.3 bits (223), Expect = 1e-17
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDH 62
DP I RL V++ + V SGKGGVGKS ++ LA L RG VGL+D+D G S
Sbjct: 42 DPDIPLIRERLAGVKHKVMVVSGKGGVGKSTMTKELAFALGARGLSVGLMDMDICGPSLP 101
Query: 63 VILGFEPKEFPEEDRGVVPPIV-HGVKFMTIAYY--TENRPTPLRGKEISDALIELLTIT 119
+ G ++ + G+ P +V V M++ Y +N RG + + L
Sbjct: 102 RLTGVRGEDAHQSAGGIEPVLVDENVTMMSMHYLLSDKNEAVLFRGPRKNGVIKMFLKDV 161
Query: 120 RWDELDYLIIDMPPGLGDPFLDVLRFL-----GRGKFIVVATPSKLALNVVEKLIQLLKD 174
W LD L+ID PPG D + V L G +++ TP ++A V + + +
Sbjct: 162 IWGNLDVLLIDTPPGTSDEHITVNSLLQQTTNGVDGAVLITTPQRVAEADVRREVNFCQK 221
Query: 175 ENREILGIIENM 186
ILG++ENM
Sbjct: 222 AKLPILGLVENM 233
>pir||JC5219 nuclear binding protein 35 - yeast (Saccharomyces cerevisiae)
>gi|1360147|emb|CAA64779.1| (X95533) Nbp35p
[Saccharomyces cerevisiae]
Length = 328
Score = 90.9 bits (222), Expect = 1e-17
Identities = 64/185 (34%), Positives = 95/185 (50%), Gaps = 7/185 (3%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVL-AERGFKVGLLDLDFHGASDHVILGF 67
I+ L + + I V SGKGGVGKS + L+ L A+ +VG +DLD G S +LG
Sbjct: 64 ITDNLSGIEHKILVLSGKGGVGKSTFAAMLSWALSADEDLQVGAMDLDICGPSLPHMLGC 123
Query: 68 EPKEFPEEDRGVVPPIV-HGVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWDEL 124
+ E + G P V + M+I Y + + RG + + + + L WD+L
Sbjct: 124 IKETVHESNSGWTPVYVTDNLATMSIQYMLPEDDSAIIWRGSKKNLLIKKFLKDVDWDKL 183
Query: 125 DYLIIDMPPGLGDPFLDVLRFL---GRGKFIVVATPSKLALNVVEKLIQLLKDENREILG 181
DYL+ID PPG D + + +++ G +VV TP ++AL V K I K ILG
Sbjct: 184 DYLVIDTPPGTSDEHISINKYMRESGIDGALVVTTPQEVALLDVRKEIDFCKKAGINILG 243
Query: 182 IIENM 186
++ENM
Sbjct: 244 LVENM 248
>gb|AAF53559.1| (AE003652) CG17904 gene product [Drosophila melanogaster]
Length = 311
Score = 82.3 bits (200), Expect = 5e-15
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERG--FKVGLLDLDFHGAS 60
DP + + ++ V++ + + SGKGGVGKS +++ L LA G+LD+D G S
Sbjct: 41 DPGKALVVESMKDVKHKLLILSGKGGVGKSTVTSLLTRYLARSNPDSNFGVLDIDICGPS 100
Query: 61 DHVILGFEPKEFPEEDRGVVPP-IVHGVKFMTIAYYTENRPTPL--RGKEISDALIELLT 117
++G + + G P I V M+I + + + RG + + + + L+
Sbjct: 101 QPRLMGALGESVHQSGYGWSPVGIEDNVCLMSIGFLLGSVDDAIIWRGPKKNGMIRQFLS 160
Query: 118 ITRWDELDYLIIDMPPGLGDPFLDVLRFLGRG------KFIVVATPSKLALNVVEKLIQL 171
W LD L++D PPG D L V+ +L + ++V TP +++L V K I
Sbjct: 161 EVDWGNLDLLLLDTPPGTSDEHLSVVSYLKDDANPESLRAVMVTTPQEVSLLDVRKEINF 220
Query: 172 LKDENREILGIIENM 186
K +N I+G+IENM
Sbjct: 221 CKKQNIPIVGVIENM 235
>emb|CAA86248.1| (Z38113) incomplete orf, len: 160, CAI: 0.09 similar to MRP_ECOLI
P21590 39.9 KD PROTEIN [Saccharomyces cerevisiae]
Length = 158
Score = 81.5 bits (198), Expect = 8e-15
Identities = 48/148 (32%), Positives = 77/148 (51%), Gaps = 7/148 (4%)
Query: 10 SARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEP 69
+A L ++++I + SGKGGVGKS ++T AL L GFKVG+LD+D G S + G E
Sbjct: 10 AASLAGIKHIILILSGKGGVGKSSVTTQTALTLCSMGFKVGVLDIDLTGPSLPRMFGLEN 69
Query: 70 KEFPEEDRGVVPPIVH-----GVKFMTIAYYTENRPTPL--RGKEISDALIELLTITRWD 122
+ + G P V + +++ + +R + RG + + + + ++ W
Sbjct: 70 ESIYQGPEGWQPVKVETNSTGSLSVISLGFLLGDRGNSVIWRGPKKTSMIKQFISDVAWG 129
Query: 123 ELDYLIIDMPPGLGDPFLDVLRFLGRGK 150
ELDYL+ID PPG D + + L K
Sbjct: 130 ELDYLLIDTPPGTSDEHISIAEELRYSK 157
>sp|Q93459|MRPL_CAEEL MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING PROTEIN F10G8.6
>gi|7498861|pir||T20728 hypothetical protein F10G8.6 -
Caenorhabditis elegans >gi|3875736|emb|CAB02285.1|
(Z80216) contains similarity to Pfam domain: PF00142
(4Fe-4S iron sulfur cluster binding proteins, NifH/frxC
family), Score=17.6, E-value=0.00015, N=1~cDNA EST
yk331c8.3 comes from this gene~cDNA EST yk331e7.3 comes
from this gene~cDNA EST yk399h2.3 co>
Length = 334
Score = 80.0 bits (194), Expect = 2e-14
Identities = 55/167 (32%), Positives = 88/167 (51%), Gaps = 8/167 (4%)
Query: 9 ISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFK-VGLLDLDFHGASDHVILGF 67
I R ++++ I + SGKGGVGKS +++ LA LA K V +LD+D G S ++G
Sbjct: 50 IQDRFSRIKHKILILSGKGGVGKSTLTSNLARALASDPSKQVAILDVDICGPSQPRMMGV 109
Query: 68 EPKEFPEEDRGVVPP-IVHGVKFMTIAYYT--ENRPTPLRGKEISDALIELLTITRWDEL 124
E +E G P I + M+IA+ +N RG + + + L W E+
Sbjct: 110 EDEEVHNSADGWTPVGIQPNLTLMSIAFLLGDKNDAVIWRGARKNGMIKQFLKDVDWGEV 169
Query: 125 DYLIIDMPPGLGDPFLDVLRFLGRG----KFIVVATPSKLALNVVEK 167
DYL+ID PPG D + +++FL + ++V+TP +++L V K
Sbjct: 170 DYLLIDTPPGTSDEHISLVQFLLQAGPLDGALIVSTPQEVSLLDVRK 216
>sp|P53381|MRP_CLOPE MRP PROTEIN HOMOLOG >gi|1149678|emb|CAA60227.1| (X86509) mrp
[Clostridium perfringens]
Length = 140
Score = 74.9 bits (181), Expect = 8e-13
Identities = 50/139 (35%), Positives = 72/139 (50%), Gaps = 10/139 (7%)
Query: 29 VGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGFEPKE-----FPEEDRGV--VP 81
VGKS ++ LA LA++G+KVG+LD D G S G K E + V VP
Sbjct: 1 VGKSTVTGILATQLAKKGYKVGVLDADITGPSMPRFFGINEKRADIVAMDSEGKQVKFVP 60
Query: 82 PIVH-GVKF--MTIAYYTENRPTPLRGKEISDALIELLTITRWDELDYLIIDMPPGLGDP 138
G+K M + E+ P RG ++ L ++ T W+ELDYL+IDMPPG D
Sbjct: 61 VKTELGIKVISMNLLMEVEDDPVIWRGPMVTGVLNQMFKDTDWEELDYLLIDMPPGTSDI 120
Query: 139 FLDVLRFLGRGKFIVVATP 157
L V++ + ++V+TP
Sbjct: 121 TLTVMQTFPIKELVIVSTP 139
>pir||A72319 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981442|gb|AAD35987.1|AE001755_10 (AE001755)
conserved hypothetical protein [Thermotoga maritima]
Length = 275
Score = 68.3 bits (164), Expect = 8e-11
Identities = 62/204 (30%), Positives = 102/204 (49%), Gaps = 30/204 (14%)
Query: 18 NVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDHVILGF-EPKEFPEED 76
N+I V SGKGGVGKS+I+ L+L L E+G +V LLD D S ++LGF PK +
Sbjct: 14 NIISVLSGKGGVGKSVIAVNLSLALKEKGLRVLLLDADVGFGSVEILLGFMAPKTLKDFF 73
Query: 77 RGVVPPIVHGVKFMTIAYYTENRPTPL-RGKEISDALIELLTITR--WDEL-------DY 126
+ V+ I + T+ L G ++ D ++ L R +DE DY
Sbjct: 74 KS-------NVRIEDIVFETKYGVDVLSSGIDMEDLILFNLGDRRRFFDEFARLLRKYDY 126
Query: 127 LIIDMPPGLGDPFLDVLRFLGRGKFIVVAT-PSKLALNVVEKLIQLLK------DENREI 179
L+ID PPG + ++ +F + F+++ T P ++ LI+LL +E +
Sbjct: 127 LVIDFPPGYNE---NLDQFYIQSDFLILVTSPEPTSIINTYTLIKLLSVKGITPEEIFLV 183
Query: 180 LGIIENMKLDE--EEDVKRIAEKY 201
+ ++ NMK + +KR+ E++
Sbjct: 184 MNMVRNMKEGRLAADRLKRVVERF 207
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.143 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91009325
Number of Sequences: 2977
Number of extensions: 3975468
Number of successful extensions: 12087
Number of sequences better than 1.0e-10: 58
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 11985
Number of HSP's gapped (non-prelim): 59
length of query: 242
length of database: 189,106,746
effective HSP length: 55
effective length of query: 187
effective length of database: 156,189,961
effective search space: 29207522707
effective search space used: 29207522707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)